Citrus Sinensis ID: 037371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Secondary Structure (PSIPRED)
cccccccHHHHccccccEEEccccccccccHHHHHcccccEEcccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHcccccccEEEEEEccHHHHHHHccccHHcccEEEEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccccccccEEEccccccccEEcccccccccccEEEEEcccccccccccccccccccEEEEccHHHHHHcccccHHccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHccHHHHHHHHHEEEEcccccHHHccHHHHHHHHHHHEcccccccHccccccHHHcHHHcEEEEEccccccccccccccccccccccHHHHHHHHHHHHcHcEEEEccHHHHHHHHccHHHHHHHHHHcHHcccccccccccccHHHHHHHcEEEEcccccEEEEEEccccccccccccccccEEEEEEccccccccHHEEcccccEEEEccHHHHHHHcccccccccccccccccccHHHHEEEHcccHHHHHHccccccccccEEEEEEccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHcccccEEEEcccc
Coil and Loop (DISEMBL)
lslsklpsgisnlvslhhldlsrtnitGLPQELKALEKLRYLnldhtrflsiippqlisgfSKLEVLRLLSRGRwsvleeeegsvlcddAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWvecgtytrppfnVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMwrgtnvksvypnplpfpklkkiQVFHCRqlkklplnsssakgRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Flexible Loop (DISEMBL)
lslsklpsgiSNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLsiippqlisgfSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQlkklplnsssakgrrVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Low Complexity Region (SEG)
LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Disordered region (IsUnstruct)
***********NLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRW****************PLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL**************EVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWED***
Disordered Region (DISOPRED)
LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVL*DD*EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSD******S*HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNS***K*RRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Disordered Region (DISEMBL)
LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Disordered Region (DISPRO)
LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSV****EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDP**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLWEDPYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9FLB4	874	Putative disease resistan	yes	no	0.915	0.345	0.346	6e-32
Q8RXS5	888	Probable disease resistan	no	no	0.875	0.325	0.357	1e-30
Q8L3R3	885	Disease resistance protei	no	no	0.903	0.336	0.378	2e-30
O64973	889	Disease resistance protei	no	no	0.896	0.332	0.360	4e-30
Q9C8T9	898	Putative disease resistan	no	no	0.878	0.322	0.336	7e-27
Q9SH22	884	Probable disease resistan	no	no	0.881	0.329	0.308	2e-25
P60839	884	Probable disease resistan	no	no	0.903	0.337	0.356	4e-25
O82484	892	Putative disease resistan	no	no	0.915	0.338	0.317	1e-24
Q9SI85	893	Probable disease resistan	no	no	0.890	0.329	0.313	2e-24
P60838	894	Probable disease resistan	no	no	0.884	0.326	0.366	2e-24

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 169/326 (51%), Gaps = 24/326 (7%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           +L +LPS  S L SL  L+LS T IT LP  L AL  L YLNL+HT  L  I    I   
Sbjct: 563 NLIELPS-FSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDL 619

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
             LEVL+L + G              D  + L++++  +KHL +L+ + R+S  ++ FL 
Sbjct: 620 PNLEVLKLYASG-------------IDITDKLVRQIQAMKHLYLLTITLRNSSGLEIFLG 666

Query: 122 YPKLVSITQSVWVECGTYTRP---PFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKK 178
             +  S T+ + ++  +Y +    P   +  +    +Q+  +   ++E    + +E V  
Sbjct: 667 DTRFSSYTEGLTLDEQSYYQSLKVPLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGP 726

Query: 179 LFRN--GFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGF-TMEEIISVDKLSDISEI 234
             R    F +L  V L +C G KDLTWLVF  +L  L +     +E IIS  + S + + 
Sbjct: 727 RVRRDISFINLRKVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKT 786

Query: 235 IGSEHNI-FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGR 293
                 I F  LE+LT+     +KS+Y +PL F KLK+I +  C +L KLPL+S SA  +
Sbjct: 787 CELAGVIPFRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQ 846

Query: 294 RVVIEGTKKWWEELQWEDQATQNAFF 319
            VVI   ++W + LQWED AT+  FF
Sbjct: 847 NVVINAEEEWLQGLQWEDVATKERFF 872

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 171/330 (51%), Gaps = 41/330 (12%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            L  LP+ IS  VSL +L LSRT I   P  L  L KL YLNL++TR +  I    ISG 
Sbjct: 569 DLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG--ISGL 626

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
           + L+VLRL   G               +   ++ EL  L++L  L+ +   +  +++FL 
Sbjct: 627 TSLKVLRLFVSG-------------FPEDPCVLNELQLLENLQTLTITLGLASILEQFLS 673

Query: 122 YPKLVSITQSVWVECGTYTRPPFNVLH-LAYMENLQELELGSSKLEEMKIDSTEEVKKLF 180
             +L S T+++ +E      P  +V+  +A M++LQEL    S + E+K+   E V  L 
Sbjct: 674 NQRLASCTRALRIE---NLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLH 730

Query: 181 ----RNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEII 235
                  F +L+ V L  C R +DLTWL+F  NL        T+  +IS    SD+ E+I
Sbjct: 731 IPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNL--------TVLRVISA---SDLKEVI 779

Query: 236 GSE----HNI--FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSS 289
             E     N+  F  L+ L +     +K ++  PLPFP L+KI V  C +L+KLPLN +S
Sbjct: 780 NKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTS 839

Query: 290 AKGRRVVIEGTKKWWEELQWEDQATQNAFF 319
                +VIE  KKW E L+WED+AT+  F 
Sbjct: 840 VPRGDLVIEAHKKWIEILEWEDEATKARFL 869

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/325 (37%), Positives = 176/325 (54%), Gaps = 27/325 (8%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SLS+LP  IS LVSL +LDLS T I  LP  L  L KL +L L+ TR L     + ISG 
Sbjct: 575 SLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRL-----ESISGI 629

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
           S L  LR L R R S    + G         LMKEL  L+HL +++    S L  + F  
Sbjct: 630 SYLSSLRTL-RLRDSKTTLDTG---------LMKELQLLEHLELITTDISSGLVGELFC- 678

Query: 122 YPKLVSITQSVWVECGTYTRP--PFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKL 179
           YP++    Q +++    + RP     VL L  + NL  + + +  + E+ I+ T   K L
Sbjct: 679 YPRVGRCIQHIYIR-DHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEKTPWKKNL 737

Query: 180 FRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEIIGS 237
               F +L+ V +  C G KDLTWL+F  NL  L + G   +E+IIS +K + + E    
Sbjct: 738 TNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLE---K 794

Query: 238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVF-HCRQLKKLPLNSSS-AKGRRV 295
           E   F +LE L +++ + +KS+Y N LPF +L+ + +  +C +L+KLPL+S S  K    
Sbjct: 795 EILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEF 854

Query: 296 VIE-GTKKWWEELQWEDQATQNAFF 319
           VI+   KKW E ++WED+ATQ  F 
Sbjct: 855 VIKYKEKKWIERVEWEDEATQYRFL 879

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  132 bits (332), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 167/327 (51%), Gaps = 31/327 (9%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SL++LP  IS L SL + +LS T I  LP  L  L+KL +LNL+H   L  I      G 
Sbjct: 575 SLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSIL-----GI 629

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
           S L  LR L           +  +L D +  L+KEL  L+HL V++    SSL  +  L 
Sbjct: 630 SNLWNLRTLGL--------RDSRLLLDMS--LVKELQLLEHLEVITLDISSSLVAEPLLC 679

Query: 122 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFR 181
             +LV   +   V+          VL L  M NL++L +    + E+KI+ T       +
Sbjct: 680 SQRLVECIKE--VDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNK 737

Query: 182 N----GFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT--MEEIISVDKLSDISEI 234
           +     F +L+ V +  C G KDLTWL+F  NL  L + GF+  +E+IIS +K  + S  
Sbjct: 738 SPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEV-GFSKEVEDIISEEKAEEHSAT 796

Query: 235 IGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSA-KGR 293
           I      F +LE L ++    +K +Y   L FP LK I V  C +L+KLPL+S S   G 
Sbjct: 797 IVP----FRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGE 852

Query: 294 RVVI-EGTKKWWEELQWEDQATQNAFF 319
            +VI  G ++W E ++WEDQATQ  F 
Sbjct: 853 ELVIYYGEREWIERVEWEDQATQLRFL 879

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 172/327 (52%), Gaps = 37/327 (11%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           LS+LP+GIS LVSL +L+LS T I  LP+ L+ L+KL +L L+ T  L  +    IS   
Sbjct: 574 LSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLH 631

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS-SLAVQKFLK 121
            L+VL+L             GS    D + + KEL  L+HL VL+ +    +L   +FL 
Sbjct: 632 NLKVLKL------------SGSSYAWDLDTV-KELEALEHLEVLTTTIDDCTLGTDQFLS 678

Query: 122 YPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELGSSKLEEMKIDSTEEVKKLF 180
             +L+S  + + +   +      + + L   M+ LQE  +      E+K+          
Sbjct: 679 SHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIKMGRI------- 731

Query: 181 RNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNM-QGFTMEEIISVDKLSDISEIIGSE 238
              F SL  V L +CR  ++LT+L+F  NLK+L++     +E+II+ +K  D     G +
Sbjct: 732 -CSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKAHD-----GEK 785

Query: 239 HNI--FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK--GRR 294
             I  F +L  L ++    +K++Y +PLPFP L+KI V  C  LKKLPL+S S K  G  
Sbjct: 786 SGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNG 845

Query: 295 VVIEGTK-KWWEELQWEDQATQNAFFS 320
           ++I   + +W   ++WED+AT+  F +
Sbjct: 846 LIITHREMEWITRVEWEDEATKTRFLA 872

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 175/334 (52%), Gaps = 43/334 (12%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SL +LP  ISNLVSL +L+L  T I+ LP+ ++ L+K+ +LNL++TR L  I    IS  
Sbjct: 580 SLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITG--ISSL 637

Query: 62  SKLEVLRLL-SRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
             L+VL+L  SR  W +                +KEL  L+HL +L+ +       ++FL
Sbjct: 638 HNLKVLKLFRSRLPWDL--------------NTVKELETLEHLEILTTTIDPR--AKQFL 681

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDST--EEVKK 178
              +L+S ++ + +   + +         +   +L+ L + + KL E +I S    E+K 
Sbjct: 682 SSHRLLSHSRLLEIYGSSVS---------SLNRHLESLSVSTDKLREFQIKSCSISEIKM 732

Query: 179 LFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNM-QGFTMEEIISVDKLSDISEIIG 236
                F SL  V + +C G ++LT+L+F   ++ L++     +E+II+ +K  +     G
Sbjct: 733 GGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACE-----G 787

Query: 237 SEHNI--FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRR 294
            E  I  F  L +LT+     +K +Y  PLPF  L++I +  C  L+KLPL+S+S K   
Sbjct: 788 EESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGE 847

Query: 295 ---VVIEGTKKWWEELQWEDQATQNAFF-SCAVL 324
              ++     +W+E ++W D+AT+  F  SC ++
Sbjct: 848 NGCIIRNKDSRWFEGVKWADEATKKRFLPSCQLI 881

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 178/331 (53%), Gaps = 33/331 (9%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++LS LP  IS LVSL +LDLS ++I  LP  L  L+KL +LNL+    L  +    I  
Sbjct: 576 VNLSGLPDQISELVSLRYLDLSYSSIGRLPVGLLKLKKLMHLNLESMLCLESVSG--IDH 633

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
            S L+ +RLL+   W  +   E     ++ E L  E++             SS A+++ L
Sbjct: 634 LSNLKTVRLLNLRMWLTISLLEELERLENLEVLTIEII-------------SSSALEQLL 680

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLF 180
              +LV   Q V V+          +L L  + +L+E+ +G   + ++ I   E    L 
Sbjct: 681 CSHRLVRCLQKVSVK--YLDEESVRILTLPSIGDLREVFIGGCGMRDIII---ERNTSLT 735

Query: 181 RNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNM-QGFTMEEIISVDKLSDISEIIGSE 238
              F +L+ V++  C G KDLTWL+F  NL  LN+     +EEIIS +K S  ++I+   
Sbjct: 736 SPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEKAS-TADIVP-- 792

Query: 239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH-CRQLKKLPLNSSSA--KGRRV 295
              F +LEYL +W    +KS+Y NPLPFP L +I V + CR+L KLPL+S S    G  +
Sbjct: 793 ---FRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQSCIVAGEEL 849

Query: 296 VIE-GTKKWWEELQWEDQATQNAFF-SCAVL 324
           VI+ G ++W E ++WED+AT+  F  SC ++
Sbjct: 850 VIQYGDEEWKERVEWEDKATRLRFLPSCKLV 880

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 172/324 (53%), Gaps = 22/324 (6%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L  LP  IS LV+L +LDLS TNI GLP  L+ L+ L +LNL+  R L       I+G S
Sbjct: 574 LDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGS-----IAGIS 628

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY 122
           KL  LR L             +++ D     +KEL  L+HL +L+    S++ +++ +  
Sbjct: 629 KLSSLRTLGL--------RNSNIMLDVMS--VKELHLLEHLEILTIDIVSTMVLEQMIDA 678

Query: 123 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRN 182
             L++  Q V + C  Y +     L L  M++L+ L + + ++ E++I+           
Sbjct: 679 GTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSP 738

Query: 183 GFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGF-TMEEIISVDKLSDISEIIGSE-H 239
            F +L+ V++  C   KDLTWL+F  N+  L ++    ++E+IS  K + ++E    + H
Sbjct: 739 CFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLH 798

Query: 240 NI--FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-GRRVV 296
            I  F +L+ L +     +KS+Y   L FP L  I V  C +L+KLPL+S +   G++ V
Sbjct: 799 KIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFV 858

Query: 297 IEGTK-KWWEELQWEDQATQNAFF 319
           ++  + +W E ++W+D+AT+  F 
Sbjct: 859 LQYKETEWIESVEWKDEATKLHFL 882

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 50/344 (14%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SL +LP  ISNLVSL +L+LS T I  L + ++ L+K+ +LNL+HT  L  I    IS  
Sbjct: 582 SLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSL 639

Query: 62  SKLEVLRLL-SRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
             L+VL+L  SR  W +                +KEL  L+HL +L+ +       ++FL
Sbjct: 640 HNLKVLKLYGSRLPWDL--------------NTVKELETLEHLEILTTTIDPR--AKQFL 683

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI--DSTEEVKK 178
              +L+S ++ + +       P            L+ L + + KL E +I   S  E+K 
Sbjct: 684 SSHRLMSRSRLLQIFGSNIFSPD---------RQLESLSVSTDKLREFEIMCCSISEIKM 734

Query: 179 LFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLN-MQGFTMEEIISVDKLSDISEIIG 236
                F SL  V + +C G ++LT+L+F   L+ L+ +    +E+II+ +K  +     G
Sbjct: 735 GGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACE-----G 789

Query: 237 SEHNI--FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-GR 293
            +  I  F  L+YL +     +K++Y  PLPF  L+KI +  C  L+KLPL+S S K G 
Sbjct: 790 EDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGE 849

Query: 294 RVVIEGTK--KWWEELQWEDQATQNAFF--------SCAVLWED 327
              I   K  +W + ++W D+AT+  F          C  ++ED
Sbjct: 850 NGCIIHYKDSRWLKGVKWADEATKKRFLPSCEHRLERCETIFED 893

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 38/330 (11%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHT-RFLSIIPPQLISG 60
           SL KLP+ IS LVSL +LDLS T I  LP  L+ L+KLRYL LD+  R  SI     IS 
Sbjct: 575 SLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISGISNISS 634

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
             KL++L+               S +  D   + +  L L+HL VL+ S +SSL V+K L
Sbjct: 635 LRKLQLLQ---------------SKMSLDMSLVEELQL-LEHLEVLNISIKSSLVVEKLL 678

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKID-------ST 173
             P+LV   Q + V  G        VL L  M+NL ++ +    + E+KI+       S 
Sbjct: 679 NAPRLVKCLQ-ILVLRGVQEESS-GVLTLPDMDNLNKVIIRKCGMCEIKIERKTLSLSSN 736

Query: 174 EEVKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLN-MQGFTMEEIISVDKLSDI 231
              K  F     +L+TV + SC G KDLTWL+F  NL  L  +    +E II+ +K   +
Sbjct: 737 RSPKTQF---LHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKAMTM 793

Query: 232 SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSA- 290
           S II      F +LE L +     ++S+Y  PL FP LK I +  C +L+KLPL+S  A 
Sbjct: 794 SGIIP-----FQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAI 848

Query: 291 KGRRVVIE-GTKKWWEELQWEDQATQNAFF 319
           +   +VI+   ++W E ++W+++AT+  F 
Sbjct: 849 RDEELVIKYQEEEWLERVEWDNEATRLRFL 878

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
24461866	890	NBS-LRR type disease resistance protein	0.954	0.353	0.448	2e-64
24461865	892	NBS-LRR type disease resistance protein	0.951	0.352	0.453	3e-62
24461864	899	NBS-LRR type disease resistance protein	0.936	0.343	0.448	1e-55
24461863	889	NBS-LRR type disease resistance protein	0.957	0.355	0.455	4e-52
24461861	890	NBS-LRR type disease resistance protein	0.939	0.348	0.447	5e-51
225443158	903	PREDICTED: probable disease resistance p	0.951	0.347	0.383	4e-47
255553059	812	Disease resistance protein RFL1, putativ	0.951	0.386	0.414	4e-47
255553103	910	Disease resistance protein RPS5, putativ	0.936	0.339	0.390	1e-46
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.903	0.363	0.376	4e-44
359482672	905	PREDICTED: probable disease resistance p	0.957	0.349	0.392	6e-43

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/323 (44%), Positives = 213/323 (65%), Gaps = 8/323 (2%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SL+ LP GIS LVSL HLDLS+++I  LP ELKAL  L+ LNL++T  L+ IP QLIS  
Sbjct: 570 SLTNLPEGISKLVSLQHLDLSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQLISNL 629

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
           S+L VLR+ +    +     E S+L    E +++ELLGLK+L V+S++ RSS  +Q FL 
Sbjct: 630 SRLHVLRMFAASHSAFDRASEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQSFLS 689

Query: 122 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSS-KLEEMKIDSTEEVKKLF 180
             KL S T+++ ++C   +     V  LA ++ L  L +    KLEE+K+D T EV++  
Sbjct: 690 SHKLRSCTRALLLQCFNDS-TSLEVSALADLKQLNRLWITECKKLEELKMDYTREVQQFV 748

Query: 181 RNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGF-TMEEIISVDKLSDISEIIGSE 238
              F SL  V + +C + KDLT+LVF  NL+ + + G   MEE++S+ K +++ E++ + 
Sbjct: 749 ---FHSLKKVEILACSKLKDLTFLVFAPNLESIELMGCPAMEEMVSMGKFAEVPEVVAN- 804

Query: 239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIE 298
            N FA+L+ L ++  TN+KS+Y  PLPFP LK +   HC +LKKLPL+S+SA+ R +VI 
Sbjct: 805 LNPFAKLQNLKLFGATNLKSIYWKPLPFPHLKSMSFSHCYKLKKLPLDSNSARERNIVIS 864

Query: 299 GTKKWWEELQWEDQATQNAFFSC 321
           GT++WWE+L+W D+AT+NAF  C
Sbjct: 865 GTRRWWEQLEWVDEATRNAFLPC 887

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/322 (45%), Positives = 205/322 (63%), Gaps = 8/322 (2%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L+KLP GIS LVSL HLDLS ++I   P ELKAL  L+ L+L++TR L  IP QLIS  S
Sbjct: 572 LTKLPVGISELVSLQHLDLSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQLISNLS 631

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY 122
           +L VLR+      +  E  E S+L    E +++ELLGLKHL V++ + RSS  +Q FL  
Sbjct: 632 RLRVLRMFGASHNAFDEASENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQSFLNS 691

Query: 123 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSK-LEEMKIDSTEEVKKLFR 181
            KL S TQ++ ++          V  LA ++ L  L++ +S  LEE+K+D  EEV++   
Sbjct: 692 HKLRSCTQALLLQ-HFKDSTSLEVSALADLKQLNRLQIANSVILEELKMDYAEEVQQF-- 748

Query: 182 NGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQ-GFTMEEIISVDKLSDISEIIGSEH 239
             FRSLN V + +C + KDLT+LVF  NLK + +     MEEI S  K +++ E++ +  
Sbjct: 749 -AFRSLNMVEICNCIQLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMAN-L 806

Query: 240 NIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEG 299
           N F +L+ L +    N+KS+Y   LPFP LK +   HC++LKKLPL+S+SAK R++VI G
Sbjct: 807 NPFEKLQNLEVAGARNLKSIYWKSLPFPHLKAMSFLHCKKLKKLPLDSNSAKERKIVISG 866

Query: 300 TKKWWEELQWEDQATQNAFFSC 321
            + W E+LQWED+AT+NAF  C
Sbjct: 867 ERNWREQLQWEDEATRNAFLRC 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/323 (44%), Positives = 195/323 (60%), Gaps = 14/323 (4%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +S  P G+S LVSL HLDLS T I  LP+EL ALE L+ LNLD T +L  IP QLIS FS
Sbjct: 582 MSSFPLGVSVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFS 641

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY 122
            L VLR+   G WS   +   S L    + L++ L GLKHL VLS +  +S  +Q  L  
Sbjct: 642 CLVVLRMFGVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNS 701

Query: 123 PKLVSITQSVWVECGTYTRP-PFNVLHLAYMENLQELELG-SSKLEEMKIDSTEEVKKLF 180
            KL S TQ++++   ++ R  P +V  LA +E+L  L +    +LEE+K+     V    
Sbjct: 702 EKLRSCTQALYLH--SFKRSEPLDVSALAGLEHLNRLWIHECEELEELKMARQPFV---- 755

Query: 181 RNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSE 238
              F+SL  + +  C R K+LT+L+F  NLK + +   F MEEIIS  K +D  E++   
Sbjct: 756 ---FQSLEKIQIYGCHRLKNLTFLLFAPNLKSIEVSSCFAMEEIISEVKFADFPEVM-PI 811

Query: 239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIE 298
              FA+L  L +   T +KS+Y  PLPFP L+ + V  C +L+KLPL+S+SAK R++VI 
Sbjct: 812 IKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIR 871

Query: 299 GTKKWWEELQWEDQATQNAFFSC 321
           G  KWWE+LQWEDQ TQNAF  C
Sbjct: 872 GYTKWWEQLQWEDQDTQNAFRPC 894

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/325 (45%), Positives = 199/325 (61%), Gaps = 9/325 (2%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L + KLP G+S L SL  LD+S+T+I  LP+ELK L  L+ LNL    +LS IP QLIS 
Sbjct: 565 LKVLKLPLGMSMLGSLELLDISQTSIGELPEELKLLVNLKCLNLRWATWLSKIPRQLISN 624

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
            S+L VLR+ + G  S  E  E SVL    E L++ELLGLK+L VL  + RSS A+Q F 
Sbjct: 625 SSRLHVLRMFATG-CSHSEASEDSVLFGGGEVLIQELLGLKYLEVLELTLRSSHALQLFF 683

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGS-SKLEEMKIDSTEEVKKL 179
              KL S  +S+ ++    T+   +    A + +L EL + S +++EE+KID TE V+K 
Sbjct: 684 SSNKLKSCIRSLLLDEVRGTKSIIDATAFADLNHLNELRIDSVAEVEELKIDYTEIVRKR 743

Query: 180 FRN-GFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGF-TMEEIISVDKLSDISEIIG 236
                F SL+ V L  C + KDLT+LVF  NLK L +     MEEIISV K +++ E++G
Sbjct: 744 REPFVFGSLHRVTLGQCLKLKDLTFLVFAPNLKSLQLLNCRAMEEIISVGKFAEVPEVMG 803

Query: 237 SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVV 296
              + F  L+ L ++    +KS+Y  PLPF  LK+++V  C QLKKLPL+S+SAK    V
Sbjct: 804 -HISPFENLQRLHLFDLPRLKSIYWKPLPFTHLKEMRVHGCNQLKKLPLDSNSAK---FV 859

Query: 297 IEGTKKWWEELQWEDQATQNAFFSC 321
           I G  + W  LQWED ATQ AF SC
Sbjct: 860 IRGEAEGWNRLQWEDDATQIAFRSC 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 145/324 (44%), Positives = 196/324 (60%), Gaps = 14/324 (4%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           + L  LP GIS LVSL +LDLS + I+ +P+ELKAL  L+ LNL++T  L  IP QLIS 
Sbjct: 573 MGLLVLPLGISKLVSLEYLDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLISN 632

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
           FS+L VLR+     +S       SVL    E L++ELLGLKHL VLS +  SS A+Q FL
Sbjct: 633 FSRLHVLRMFGNAYFSYGNYPIESVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFL 692

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSS-KLEEMKIDSTEEVKKL 179
               L S T+++ ++         +V  LA ++ L+ L +    +L E+KID   EV+  
Sbjct: 693 TSHMLRSCTRAMLLQ-DFQGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQ-- 749

Query: 180 FRNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGF-TMEEIISVDKLSDISEIIGS 237
            R GF SL +  +  C + KDLT LV + NLK + +     MEEIISV + +        
Sbjct: 750 -RYGFHSLQSFEVNYCSKLKDLTLLVLIPNLKSIEVTDCEAMEEIISVGEFA-------G 801

Query: 238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVI 297
             N FA+L+YL +    N+KS+Y  PLPFP L+++ V  C +LKKLPL+S+SAK  ++VI
Sbjct: 802 NPNAFAKLQYLGIGNLPNLKSIYWKPLPFPCLEELTVSDCYELKKLPLDSNSAKEHKIVI 861

Query: 298 EGTKKWWEELQWEDQATQNAFFSC 321
            G   WW  LQWED+ATQNAF SC
Sbjct: 862 RGAANWWRNLQWEDEATQNAFLSC 885

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/342 (38%), Positives = 197/342 (57%), Gaps = 28/342 (8%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +S+LP+ I  LVSL +LDLS T I+ LP E K L  L+YLNLD+T+ L IIP  ++S  S
Sbjct: 571 VSELPTEIFRLVSLRYLDLSWTCISHLPNEFKNLVNLKYLNLDYTQQLGIIPRHVVSSMS 630

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY 122
           +L+VL++   G + V E+   +VL D  E L+ EL  L +L  L+ + RS+ A+Q+ L  
Sbjct: 631 RLQVLKMFHCGFYGVGED---NVLSDGNEALVNELECLNNLCDLNITIRSASALQRCLCS 687

Query: 123 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL----GSSKLEEMKIDSTEEVKK 178
            K+   TQ ++++         N L ++++EN++ L+       + L ++ I+ T+E ++
Sbjct: 688 EKIEGCTQDLFLQFFN----GLNSLDISFLENMKRLDTLHISDCATLADLNINGTDEGQE 743

Query: 179 LFRN-------------GFRSLNTVVLRSCRG-KDLTWLVFVQNLKQL-NMQGFTMEEII 223
           +  +              F SL +V +  C   KDLTWLVF  NL  L  +    +E++I
Sbjct: 744 ILTSDNYLDNSKITSLKNFHSLRSVRIERCLMLKDLTWLVFAPNLVNLWIVFCRNIEQVI 803

Query: 224 SVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKL 283
              K  + +E  G   + FA+LE L +     +KS+Y N L FP LK+++V  C +LKKL
Sbjct: 804 DSGKWVEAAE--GRNMSPFAKLEDLILIDLPKLKSIYRNTLAFPCLKEVRVHCCPKLKKL 861

Query: 284 PLNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAVLW 325
           PLNS+SAKGR +VI G K W  EL+WED+A  NAF  C   W
Sbjct: 862 PLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHNAFLPCFRSW 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553059|ref|XP_002517572.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223543204|gb|EEF44736.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 136/328 (41%), Positives = 196/328 (59%), Gaps = 14/328 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            + +LP GIS LVSL +L+LS T++T L  EL  L+KL+YLNL+    L +IP Q++S  
Sbjct: 477 GIMELPLGISKLVSLQYLNLSDTSLTQLSVELSRLKKLKYLNLERNGRLKMIPGQVLSNL 536

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
           S L+VLR+L  G  S L E+    L  D +  ++EL  L++LN LS +   S  +Q F  
Sbjct: 537 SALQVLRMLRCG--SHLYEKAKDNLLADGKLQIEELQSLENLNELSITINFSSILQSFFN 594

Query: 122 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE-LGSSKLEEMKI----DSTEEV 176
             + ++ T+++ + C    R   ++  LA M+NL  LE L +S LE + +      T +V
Sbjct: 595 MDRFLNCTRALLLMCFDAPRS-VDISFLANMKNLGILEILANSSLEVLDVGILTQGTSQV 653

Query: 177 KKLF--RNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQ-GFTMEEIISVDKLSDIS 232
             +   +  F SL  VV+ +CR  ++LTWL    NL  L ++    MEEI SV  L + +
Sbjct: 654 PSVISSKKCFDSLQRVVVYNCRKLRELTWLSLAPNLAILRVKYNENMEEIFSVRILIEFA 713

Query: 233 EIIGSEH-NIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK 291
            I GS +    A+LE+L + +   ++SV+PN L FP LKKI+VF C +LKKLPLNSSS K
Sbjct: 714 -IRGSINLKPLAKLEFLELGKLPRLESVHPNALSFPFLKKIKVFKCPKLKKLPLNSSSVK 772

Query: 292 GRRVVIEGTKKWWEELQWEDQATQNAFF 319
           G  VVIE   KWWE+++WED AT+ AF 
Sbjct: 773 GSEVVIEAEAKWWEDVEWEDDATKAAFL 800

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553103|ref|XP_002517594.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543226|gb|EEF44758.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/325 (39%), Positives = 192/325 (59%), Gaps = 16/325 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            + +LPSGIS++VSL +L++S T I  LP  L  LEKL+YLNL+H   L +IP QL+   
Sbjct: 572 GIQELPSGISDMVSLQYLNISYTVINQLPAGLMRLEKLKYLNLEHNENLYMIPKQLVRSL 631

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
           S+L+ LR+L  G     + ++ ++L D     +KEL  L++LN LS + R + A+Q F  
Sbjct: 632 SRLQALRMLGCGPVHYPQAKD-NLLSDGV--CVKELQCLENLNRLSITVRCASALQSFFS 688

Query: 122 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL----QELELGS--SKLEEMKIDSTEE 175
             KL S  +++ +E    +    N+  LA M++L      L + S  ++ E   + +   
Sbjct: 689 THKLRSCVEAISLE-NFSSSVSLNISWLANMQHLLTCPNSLNINSNMARTERQAVGNLHN 747

Query: 176 VKKLFRNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGF-TMEEIISVDKLSDISE 233
              L    F +L  V +R C + +DLTWL+ V NL  L +     +EEIISV++L  + +
Sbjct: 748 STILRTRCFNNLQEVRVRKCFQLRDLTWLILVPNLTVLEVTMCRNLEEIISVEQLGFVGK 807

Query: 234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGR 293
           I+    N FARL+ L +     +K +YP+ LPFP LKKI+VF+C  LKK+PL S+SAKGR
Sbjct: 808 IL----NPFARLQVLELHDLPQMKRIYPSILPFPFLKKIEVFNCPMLKKVPLGSNSAKGR 863

Query: 294 RVVIEGTKKWWEELQWEDQATQNAF 318
           +VVIE    WW  ++WE++ T+ AF
Sbjct: 864 KVVIEADDHWWNGVEWENRETKAAF 888

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 29/327 (8%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +++ PSGI  LVSL +L+LSRT I  LP +LK L KL+ LNL+HT  L  IP Q+IS FS
Sbjct: 505 ITEFPSGILKLVSLQYLNLSRTGIRQLPVQLKNLVKLKCLNLEHTYELRTIPMQVISNFS 564

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAE-----PLMKELLGLKHLNVLSWSFRSSLAVQ 117
            L VLR+              SV+ D  +      L ++L  L+HLN+L+ + RS  ++Q
Sbjct: 565 SLTVLRMFHCA-------SSDSVVGDGVQTGGPGSLARDLQCLEHLNLLTITIRSQYSLQ 617

Query: 118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL-GSSKLEEMKIDSTEEV 176
            F  + K ++ TQ++ ++   + R   ++  L  M +L +LEL   S L+++ I+++   
Sbjct: 618 TFASFNKFLTATQALSLQKFHHARS-LDISLLEGMNSLDDLELIDCSNLKDLSINNSSIT 676

Query: 177 KKLFRNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEI 234
           ++     F SL  V + +C + +DL WL    N+K L +   + MEEII  +K       
Sbjct: 677 RE---TSFNSLRRVSIVNCTKLEDLAWLTLAPNIKFLTISRCSKMEEIIRQEK------- 726

Query: 235 IGSEHN--IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKG 292
              + N  +F  LE+L +     +K +YP+ LPFP LK+I V  C  L+KLPLNS+SAK 
Sbjct: 727 -SGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPSLKEIFVDDCPNLRKLPLNSNSAKE 785

Query: 293 RRVVIEGTKKWWEELQWEDQATQNAFF 319
            R+VI+G + WW  L+WED+A Q+ F 
Sbjct: 786 HRIVIQGWEDWWRRLEWEDEAAQHTFL 812

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 133/339 (39%), Positives = 194/339 (57%), Gaps = 23/339 (6%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           S+++LP GISNLVSL +L+LS+TNI  LP ELK L+KL+ L L     LS IP QLIS  
Sbjct: 569 SITELPRGISNLVSLQYLNLSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQLISSL 628

Query: 62  SKLEVLRLLSRG--RWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119
           S L+V+ + + G    +VL++    +L DD E L++EL  LK+L+ L  S +S+ A ++ 
Sbjct: 629 SMLQVIDMFNSGISERTVLKD---GILSDDNEALVQELESLKYLHGLGVSVKSASAFKRL 685

Query: 120 LKYPKLVSITQSVWVEC--GTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVK 177
           L   KL      + ++   G+ +    ++ +   + +L   + GS  LE+++ID   E K
Sbjct: 686 LSSYKLRICISGLCLKNFNGSSSLNLTSLSNAKCLSSLYISKCGS--LEDLEIDWAGEGK 743

Query: 178 KLF-----------RNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNM-QGFTMEEIIS 224
           +              N F SL  + +  C R KDLTWLVFV NLK L +     M+E+I 
Sbjct: 744 ETVESNYLNSKVSSHNSFHSLVWLGIERCSRLKDLTWLVFVPNLKVLTIIDCDQMQEVIG 803

Query: 225 VDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP 284
             K  + +E  G   + F +L+ L +     +KS++   LPF  L  I V +C  LKKLP
Sbjct: 804 TGKCGESAEN-GENLSPFVKLQVLELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLP 862

Query: 285 LNSSSAKGRRVVIEGTKKWWEELQWEDQATQNAFFSCAV 323
           L+++SAKG R+VI G  KWW E++WED+ATQN F  C V
Sbjct: 863 LSANSAKGNRIVIAGHNKWWNEVEWEDEATQNVFLPCFV 901

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.912	0.340	0.373	4e-36
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.887	0.327	0.366	1.2e-33
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.915	0.345	0.346	1.1e-32
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.875	0.326	0.347	2.8e-31
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.912	0.337	0.318	1.6e-30
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.878	0.299	0.365	3.6e-29
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.927	0.344	0.341	1.7e-28
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.878	0.326	0.321	6.4e-26
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.8	0.310	0.321	2.2e-23
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.893	0.328	0.309	6e-22

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 4.0e-36, P = 4.0e-36
 Identities = 122/327 (37%), Positives = 176/327 (53%)

Query:     2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
             SLS+LP  IS LVSL +LDLS T I  LP  L  L KL +L L+ TR L     + ISG 
Sbjct:   575 SLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRL-----ESISGI 629

Query:    62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
             S L  LR L R R S    + G         LMKEL  L+HL +++    S L  + F  
Sbjct:   630 SYLSSLRTL-RLRDSKTTLDTG---------LMKELQLLEHLELITTDISSGLVGELFC- 678

Query:   122 YPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLF 180
             YP++    Q +++ +          VL L  + NL  + + +  + E+ I+ T   K L 
Sbjct:   679 YPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEKTPWKKNLT 738

Query:   181 RNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEIIGSE 238
                F +L+ V +  C G KDLTWL+F  NL  L + G   +E+IIS +K + + E    E
Sbjct:   739 NPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLE---KE 795

Query:   239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH-CRQLKKLPLNSSSA-KGRRVV 296
                F +LE L +++ + +KS+Y N LPF +L+ + + + C +L+KLPL+S S  K    V
Sbjct:   796 ILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFV 855

Query:   297 IE-GTKKWWEELQWEDQATQNAFF-SC 321
             I+   KKW E ++WED+ATQ  F  +C
Sbjct:   856 IKYKEKKWIERVEWEDEATQYRFLPTC 882

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 120/327 (36%), Positives = 175/327 (53%)

Query:     2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
             SL KLP+ IS LVSL +LDLS T I  LP  L+ L+KLRYL LD+ + L     + ISG 
Sbjct:   575 SLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRL-----KSISGI 629

Query:    62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
             S +  LR L      +L+    S +  D   L++EL  L+HL VL+ S +SSL V+K L 
Sbjct:   630 SNISSLRKLQ-----LLQ----SKMSLDMS-LVEELQLLEHLEVLNISIKSSLVVEKLLN 679

Query:   122 YPKLVSITQ-----SVWVEC-GTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175
              P+LV   Q      V  E  G  T P  + L+   +      E+   + + + + S   
Sbjct:   680 APRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKIER-KTLSLSSNRS 738

Query:   176 VKKLFRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLN-MQGFTMEEIISVDKLSDISE 233
              K  F     +L+TV + SC G KDLTWL+F  NL  L  +    +E II+ +K   +S 
Sbjct:   739 PKTQF---LHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKAMTMSG 795

Query:   234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSA-KG 292
             II      F +LE L +     ++S+Y  PL FP LK I +  C +L+KLPL+S  A + 
Sbjct:   796 IIP-----FQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRD 850

Query:   293 RRVVIE-GTKKWWEELQWEDQATQNAF 318
               +VI+   ++W E ++W+++AT+  F
Sbjct:   851 EELVIKYQEEEWLERVEWDNEATRLRF 877

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 113/326 (34%), Positives = 169/326 (51%)

Query:     2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
             +L +LPS  S L SL  L+LS T IT LP  L AL  L YLNL+HT  L  I    I   
Sbjct:   563 NLIELPS-FSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDL 619

Query:    62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
               LEVL+L + G              D  + L++++  +KHL +L+ + R+S  ++ FL 
Sbjct:   620 PNLEVLKLYASG-------------IDITDKLVRQIQAMKHLYLLTITLRNSSGLEIFLG 666

Query:   122 YPKLVSITQSVWVECGTY---TRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKK 178
               +  S T+ + ++  +Y    + P   +  +    +Q+  +   ++E    + +E V  
Sbjct:   667 DTRFSSYTEGLTLDEQSYYQSLKVPLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGP 726

Query:   179 LFRN--GFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEI 234
               R    F +L  V L +C G KDLTWLVF  +L  L +     +E IIS  + S + + 
Sbjct:   727 RVRRDISFINLRKVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKT 786

Query:   235 IGSEHNI-FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGR 293
                   I F  LE+LT+     +KS+Y +PL F KLK+I +  C +L KLPL+S SA  +
Sbjct:   787 CELAGVIPFRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQ 846

Query:   294 RVVIEGTKKWWEELQWEDQATQNAFF 319
              VVI   ++W + LQWED AT+  FF
Sbjct:   847 NVVINAEEEWLQGLQWEDVATKERFF 872

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 114/328 (34%), Positives = 175/328 (53%)

Query:    19 LDLS-RTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSV 77
             LDLS   N++GLP ++  L  LRYL+L ++   SI   +L  G  KL+ L  L+      
Sbjct:   570 LDLSWNVNLSGLPDQISELVSLRYLDLSYS---SI--GRLPVGLLKLKKLMHLNLESMLC 624

Query:    78 LEEEEGSVLCDDAEP-------------LMKELLGLKHLNVLSWSFRSSLAVQKFLKYPK 124
             LE   G     + +              L++EL  L++L VL+    SS A+++ L   +
Sbjct:   625 LESVSGIDHLSNLKTVRLLNLRMWLTISLLEELERLENLEVLTIEIISSSALEQLLCSHR 684

Query:   125 LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKID-STEEVKKLFRNG 183
             LV   Q V V+          +L L  + +L+E+ +G   + ++ I+ +T      F N 
Sbjct:   685 LVRCLQKVSVKY--LDEESVRILTLPSIGDLREVFIGGCGMRDIIIERNTSLTSPCFPN- 741

Query:   184 FRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNM-QGFTMEEIISVDKLSDISEIIGSEHNI 241
                L+ V++  C G KDLTWL+F  NL  LN+     +EEIIS +K S  ++I+      
Sbjct:   742 ---LSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEKAST-ADIVP----- 792

Query:   242 FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH-CRQLKKLPLNSSSA--KGRRVVIE 298
             F +LEYL +W    +KS+Y NPLPFP L +I V + CR+L KLPL+S S    G  +VI+
Sbjct:   793 FRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQSCIVAGEELVIQ 852

Query:   299 -GTKKWWEELQWEDQATQNAFF-SCAVL 324
              G ++W E ++WED+AT+  F  SC ++
Sbjct:   853 YGDEEWKERVEWEDKATRLRFLPSCKLV 880

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 103/323 (31%), Positives = 172/323 (53%)

Query:     3 LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
             L  LP  IS LV+L +LDLS TNI GLP  L+ L+ L +LNL+  R L  I     +G S
Sbjct:   574 LDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSI-----AGIS 628

Query:    63 KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY 122
             KL  LR L             +++ D     +KEL  L+HL +L+    S++ +++ +  
Sbjct:   629 KLSSLRTLGL--------RNSNIMLDVMS--VKELHLLEHLEILTIDIVSTMVLEQMIDA 678

Query:   123 PKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRN 182
               L++  Q V + C  Y +     L L  M++L+ L + + ++ E++I+           
Sbjct:   679 GTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSP 738

Query:   183 GFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEIIGSE-H 239
              F +L+ V++  C   KDLTWL+F  N+  L ++    ++E+IS  K + ++E    + H
Sbjct:   739 CFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLH 798

Query:   240 NI--FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-GRRVV 296
              I  F +L+ L +     +KS+Y   L FP L  I V  C +L+KLPL+S +   G++ V
Sbjct:   799 KIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFV 858

Query:   297 IEGTK-KWWEELQWEDQATQNAF 318
             ++  + +W E ++W+D+AT+  F
Sbjct:   859 LQYKETEWIESVEWKDEATKLHF 881

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.6e-29, P = 3.6e-29
 Identities = 119/326 (36%), Positives = 175/326 (53%)

Query:     4 SKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSK 63
             ++LP  IS LVSL +LDLS T I  LP  LK L+KL +LNL  T  L  I     SG S 
Sbjct:   575 NELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSI-----SGIS- 628

Query:    64 LEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYP 123
                 RLLS  RW  L E   S +  DA  ++KEL  L++L  L  +  + L +    +  
Sbjct:   629 ----RLLSL-RWLSLRE---SNVHGDAS-VLKELQQLENLQDLRITESAEL-ISLDQRLA 678

Query:   124 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI---DSTEEVKKLF 180
             KL+S+ +   +E G + + PF++  LA MENL  L + +S   E+ I   +S  E   L 
Sbjct:   679 KLISVLR---IE-G-FLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLH 733

Query:   181 RNG----FRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEI 234
              N     F +L  +++  C   KDLTW++F  NL  L+++    + EII+ +K  +++ I
Sbjct:   734 INPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSI 793

Query:   235 IGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-GR 293
             I      F +LE L ++    ++S+Y +PLPFP L  I V +C +L+KLPLN++S     
Sbjct:   794 ITP----FQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVE 849

Query:   294 RVVIEGTKKWWE-ELQWEDQATQNAF 318
                I       E EL+WED+ T+N F
Sbjct:   850 EFEIRMDPPEQENELEWEDEDTKNRF 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.7e-28, P = 1.7e-28
 Identities = 114/334 (34%), Positives = 164/334 (49%)

Query:     2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
             SL++LP  IS L SL + +LS T I  LP  L  L+KL +LNL+H   L  I      G 
Sbjct:   575 SLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSI-----LGI 629

Query:    62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
             S L  LR L           +  +L D +  L+KEL  L+HL V++    SSL  +  L 
Sbjct:   630 SNLWNLRTLGL--------RDSRLLLDMS--LVKELQLLEHLEVITLDISSSLVAEPLLC 679

Query:   122 YPKLVSITQSV-WVECGTYTRPPFNVLHLAYMENLQELELGSSKLE-EMKIDSTEEVKKL 179
               +LV   + V +      +     +  +  +  L     G  +++ E    S+   K  
Sbjct:   680 SQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSP 739

Query:   180 FRNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT--MEEIISVDKLSDISEIIG 236
                 F +L+ V +  C G KDLTWL+F  NL  L + GF+  +E+IIS +K  + S  I 
Sbjct:   740 TTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEV-GFSKEVEDIISEEKAEEHSATIV 798

Query:   237 SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSA-KGRRV 295
                  F +LE L ++    +K +Y   L FP LK I V  C +L+KLPL+S S   G  +
Sbjct:   799 P----FRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEEL 854

Query:   296 VIE-GTKKWWEELQWEDQATQNAFF-SCAVLWED 327
             VI  G ++W E ++WEDQATQ  F  S    W +
Sbjct:   855 VIYYGEREWIERVEWEDQATQLRFLPSSRWRWRE 888

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 6.4e-26, P = 6.4e-26
 Identities = 102/317 (32%), Positives = 164/317 (51%)

Query:    19 LDLSRT-NITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG----FSKLEVLRLLSR- 72
             LDLS   ++  LP E+     L+YL+L  TR + I P  L+      +  LE  R++   
Sbjct:   562 LDLSMNRDLRHLPNEISECVSLQYLSLSRTR-IRIWPAGLVELRKLLYLNLEYTRMVESI 620

Query:    73 ---GRWSVLEEEEGSVLCDDAEP-LMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSI 128
                   + L+     V     +P ++ EL  L++L  L+ +   +  +++FL   +L S 
Sbjct:   621 CGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASC 680

Query:   129 TQSVWVECGTYTRPPFNVLH-LAYMENLQELELGSSKLEEMKIDSTEEVKKLF----RNG 183
             T+++ +E      P  +V+  +A M++LQEL    S + E+K+   E V  L        
Sbjct:   681 TRALRIE---NLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTF 737

Query:   184 FRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNM-QGFTMEEIISVDKLSDISEIIGSEHNI 241
             F +L+ V L  C R +DLTWL+F  NL  L +     ++E+I+ +K ++   +I  +   
Sbjct:   738 FPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEK-AEQQNLIPFQELK 796

Query:   242 FARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTK 301
               RLE + M     +K ++  PLPFP L+KI V  C +L+KLPLN +S     +VIE  K
Sbjct:   797 ELRLENVQM-----LKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHK 851

Query:   302 KWWEELQWEDQATQNAF 318
             KW E L+WED+AT+  F
Sbjct:   852 KWIEILEWEDEATKARF 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 91/283 (32%), Positives = 152/283 (53%)

Query:     2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
             SLS LP  IS L SL +++LS T I  LP   K L+KL +LNL+ T  L  I   + +  
Sbjct:   571 SLSSLPEAISKLGSLQYINLSTTGIKWLPVSFKELKKLIHLNLEFTDELESIVG-IATSL 629

Query:    62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLK 121
               L+VL+L S            S +C D   LM+ELL L+HL VL+ + + +L ++    
Sbjct:   630 PNLQVLKLFS------------SRVCIDGS-LMEELLLLEHLKVLTATIKDALILESIQG 676

Query:   122 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLE-EMKIDSTEEVKKLF 180
               +LVS  Q++ +   +      N + L  +++L+ +    S+++ + +     E+K   
Sbjct:   677 VDRLVSSIQALCLRNMSAPVIILNTVALGGLQHLEIVGSKISEIKIDWERKGRGELKCTS 736

Query:   181 RNGFRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQ-GFTMEEIISVDKLSDISEIIGSE 238
               GF+ L+ V + +  G +DLTWL+F QNL++L++    T+EEII+ +K   I+ +  + 
Sbjct:   737 SPGFKHLSVVEIFNLEGPRDLTWLLFAQNLRRLSVTLSLTIEEIINKEKGMSITNVHPNI 796

Query:   239 HNIFARLEYLTMWRGTN-VKSVYPNPLPFPKLKKIQVFHCRQL 280
                F +LE+L + RG + +K +  NP   P L++  V  C +L
Sbjct:   797 VVPFGKLEFLEV-RGLDELKRICWNPPALPNLRQFDVRSCLKL 838

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 107/346 (30%), Positives = 175/346 (50%)

Query:     3 LSKLPSG-ISNLVSLHHLDLS-RTNITGLPQELKALEKLRYLNLDHTR------------ 48
             L  LP   I  +  L  LDLS   +   LP+++  L  L++L+L +T             
Sbjct:   545 LKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELK 604

Query:    49 ---FLSII-PPQL--ISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKH 102
                FL +    +L  ISG S+L  LRLL      +L    GS +  DA  ++KEL  L++
Sbjct:   605 KLTFLDLTYTDRLCSISGISRLLSLRLLR-----LL----GSKVHGDAS-VLKELQQLQN 654

Query:   103 LNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGS 162
             L  L+ +  + L +    +  KL+S   ++ +E G + + PF++  LA MENL  L + +
Sbjct:   655 LQELAITVSAEL-ISLDQRLAKLIS---NLCIE-G-FLQKPFDLSFLASMENLSSLRVEN 708

Query:   163 SKLEEMKIDSTEEVKKLFRNG-----FRSLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQG 216
             S   E+K   +E      R       F +L+ + +  C   KDLTW++F  NL  L ++ 
Sbjct:   709 SYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIED 768

Query:   217 FT-MEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVF 275
                + EII+ +K ++++ I       F +LE+L ++    ++S+Y +PLPFP L  + V 
Sbjct:   769 SREVGEIINKEKATNLTSITP-----FLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVS 823

Query:   276 HCRQLKKLPLNSSS-AKGRRVVIE--GTKKWWEELQWEDQATQNAF 318
             +C +L+KLPLN++S +K     I      +   EL+WED  T+N F
Sbjct:   824 NCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRF 869

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 15 SLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
          +L  LDLS   +T +P    K L  L+ L+L     L+ I P+  SG   L  L L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
           +P  + +L  L  L LS   ++G +P EL + +KL  L+L H +    IP    + FS++
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEM 546

Query: 65  EVLRLL 70
            VL  L
Sbjct: 547 PVLSQL 552

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
           +P  I  L SL+HLDL   N+TG +P  L  L+ L+YL L   +    IPP  I    KL
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKL 286

Query: 65  EVLRL 69
             L L
Sbjct: 287 ISLDL 291

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 2  SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRF 49
           L+ +P G    L +L  LDLS  N+T +  E    L  LR L+L     
Sbjct: 11 RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSI 52
          +L  LDLS   IT LP  L  L  L  L+L   +   +
Sbjct: 2  NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDL 38

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.67
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.44
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.43
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.32
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.29
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.75
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.61
PLN03150	623	hypothetical protein; Provisional	98.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.56
KOG4341	483	consensus F-box protein containing LRR [General fu	98.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.43
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG4341	483	consensus F-box protein containing LRR [General fu	98.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
PLN03150	623	hypothetical protein; Provisional	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.49
PRK15386	426	type III secretion protein GogB; Provisional	97.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.73
PRK15386	426	type III secretion protein GogB; Provisional	96.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.32
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.24
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.87
smart00370	26	LRR Leucine-rich repeats, outliers.	91.87
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.03
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.19
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=7.2e-20  Score=187.23  Aligned_cols=187  Identities=18%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             cCChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371            5 KLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG   83 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (330)
                      .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+         
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l---------  224 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL---------  224 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc---------
Confidence            45666666666666666666655 56666666666666666666665556654 66666666666666665         


Q ss_pred             ccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEc
Q 037371           84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGS  162 (330)
Q Consensus        84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (330)
                            ....+..++++++|++|++++|.....  +......+.+|+.|++ ++..   .......+..+++|+.|+++.
T Consensus       225 ------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        225 ------SGEIPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKL---SGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             ------CCcCChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCee---eccCchhHhhccCcCEEECcC
Confidence                  334555666666666666666544321  1111122344555555 2211   222333455566666666664


Q ss_pred             cCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEeccccc
Q 037371          163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTME  220 (330)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~  220 (330)
                      |.+....+..        ...+++|++|++++|.+..  +.++..+++|+.|++++|.+.
T Consensus       294 n~l~~~~p~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        294 NSLSGEIPEL--------VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS  345 (968)
T ss_pred             CeeccCCChh--------HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence            4443222211        1344555555555553322  223455555555555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=1.8e-19  Score=184.35  Aligned_cols=245  Identities=18%  Similarity=0.154  Sum_probs=169.1

Q ss_pred             cCChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371            5 KLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG   83 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (330)
                      .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+         
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l---------  248 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL---------  248 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee---------
Confidence            68889999999999999999887 78999999999999999999888888887 99999999999999988         


Q ss_pred             ccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEc
Q 037371           84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGS  162 (330)
Q Consensus        84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (330)
                            ....+..++++++|+.|++++|.....  +........+|++|++ ++..   .......+..+++|+.|+++.
T Consensus       249 ------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        249 ------TGPIPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSL---SGEIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             ------ccccChhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCee---ccCCChhHcCCCCCcEEECCC
Confidence                  446788899999999999998865421  1111123456788887 4332   344445677888888888886


Q ss_pred             cCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccc-------c---
Q 037371          163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLS-------D---  230 (330)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-------~---  230 (330)
                      |.+....+..        ...+++|+.|++++|.+..  +..++.+++|+.|++++|.+....+.....       .   
T Consensus       318 n~~~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  389 (968)
T PLN00113        318 NNFTGKIPVA--------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS  389 (968)
T ss_pred             CccCCcCChh--------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence            6665433322        2567778888888885432  335677788888888777665443321100       0   


Q ss_pred             --ccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371          231 --ISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       231 --~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                        +.+.....+..+++|+.|++.+|.-...++.....+++|+.|+++++.
T Consensus       390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN  439 (968)
T ss_pred             CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence              000000134456677777777764333444444457777777777754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=1.5e-19  Score=164.04  Aligned_cols=248  Identities=17%  Similarity=0.211  Sum_probs=151.3

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.++++|. +|..-.++++|+|++|.|+.+.. .|..+.+|..|.++.|++ ..+|...|.++++|+.|++..|.+.   
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~ir---  234 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIR---  234 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhcccccee---
Confidence            45667775 47666788888888888875533 566777888888888866 5666665777888888888887761   


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCC--------------------
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGT--------------------  138 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------  138 (330)
                                  ..-.-.++.+++|+.|.+..|.+..+++  +++..+.+++.|++..+.                    
T Consensus       235 ------------ive~ltFqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  235 ------------IVEGLTFQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             ------------eehhhhhcCchhhhhhhhhhcCcccccC--cceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence                        1112234455555555555555444332  112223334444442222                    


Q ss_pred             --CCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEE
Q 037371          139 --YTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNM  214 (330)
Q Consensus       139 --~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L  214 (330)
                        +.+.......+...++|+.|+++.|.++.+..+.+        ..++.|++|.|+.|++.++.  .+..+.+|+.|+|
T Consensus       301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             chhhhheeecchhhhcccceeEeccccccccCChhHH--------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence              11333344445555566666666666555544333        34566666666666555543  4566777777777


Q ss_pred             ecccccccccccccccccccccCccccCcccceeecccccccccccCCCCC-CCCccEEEEccCCCCCCCCC
Q 037371          215 QGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQVFHCRQLKKLPL  285 (330)
Q Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~c~~L~~lp~  285 (330)
                      ++|.+...+.+..         ..+..+++|++|++.++ +++.++-..+. ++.|++|++.+ +-+.++-.
T Consensus       373 r~N~ls~~IEDaa---------~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~  433 (873)
T KOG4194|consen  373 RSNELSWCIEDAA---------VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD-NAIASIQP  433 (873)
T ss_pred             cCCeEEEEEecch---------hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC-Ccceeecc
Confidence            7777665543211         25666889999999987 78887766544 88999999888 45555433

>PLN03210 Resistant to P

Probab=99.75  E-value=7.4e-18  Score=173.80  Aligned_cols=238  Identities=23%  Similarity=0.294  Sum_probs=145.2

Q ss_pred             CCccCChhhhccccccEeecCCCC-CcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTN-ITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      .+..+|.++..+++|++|+++++. +..+|. ++.+++|+.|++.+|.....+|.. ++++++|+.|++++|..      
T Consensus       622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~------  693 (1153)
T PLN03210        622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN------  693 (1153)
T ss_pred             cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC------
Confidence            456677777778888888887764 456663 667777777777777666777765 77777777777777654      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEE---------------------echhhHHHhhcc-----------------
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSF---------------------RSSLAVQKFLKY-----------------  122 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~---------------------~~~~~~~~~~~~-----------------  122 (330)
                               ...++..+ ++++|+.|++++                     +.+..++.....                 
T Consensus       694 ---------L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        694 ---------LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             ---------cCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence                     11222222 344444444443                     322211110000                 


Q ss_pred             ----------ccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEE
Q 037371          123 ----------PKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTV  190 (330)
Q Consensus       123 ----------~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  190 (330)
                                .....+|+.|++ ++..   ....+..+.++++|+.|++. |+.++.++..          ..+++|++|
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~---l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~----------~~L~sL~~L  830 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPS---LVELPSSIQNLHKLEHLEIENCINLETLPTG----------INLESLESL  830 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCC---ccccChhhhCCCCCCEEECCCCCCcCeeCCC----------CCccccCEE
Confidence                      001123344444 2222   11223345566666666666 5555543211          135667777


Q ss_pred             EEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCc
Q 037371          191 VLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKL  269 (330)
Q Consensus       191 ~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L  269 (330)
                      ++++| .+..++..  .++|+.|+|+++.+++++.             .+..+++|++|++.+|..+..++.....+++|
T Consensus       831 ~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~-------------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L  895 (1153)
T PLN03210        831 DLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPW-------------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL  895 (1153)
T ss_pred             ECCCCCcccccccc--ccccCEeECCCCCCccChH-------------HHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence            77776 44433322  3567777777777766643             67789999999999999999988888889999


Q ss_pred             cEEEEccCCCCCCCCC
Q 037371          270 KKIQVFHCRQLKKLPL  285 (330)
Q Consensus       270 ~~L~i~~c~~L~~lp~  285 (330)
                      +.+.+.+|.+|+.++.
T Consensus       896 ~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        896 ETVDFSDCGALTEASW  911 (1153)
T ss_pred             CeeecCCCcccccccC
Confidence            9999999999987654

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=3e-19  Score=162.11  Aligned_cols=257  Identities=19%  Similarity=0.204  Sum_probs=159.8

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+.++-+ +++-++.|++|||+.|.|+++|. ++..=.++++|++++|++ +.+..+.|..+.+|-.|.+++|.+    
T Consensus       135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNri----  209 (873)
T KOG4194|consen  135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRI----  209 (873)
T ss_pred             cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCcc----
Confidence            34555554 58999999999999999998887 566678899999999988 556655599999999999999999    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 ...-+..+.++++|+.|++..|.+...+.+.  +...++|+.|.+.-++  +.......|..+.++++|
T Consensus       210 -----------ttLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~--I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  210 -----------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRND--ISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             -----------cccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcC--cccccCcceeeeccccee
Confidence                       4456788889999999999998765432211  1223445555552222  233333456666666777


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccc-------
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLS-------  229 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-------  229 (330)
                      ++..|+++.+...|.        -++.+|+.|+++.|.+..  +......++|+.|+|++|.+..+.++.+..       
T Consensus       275 ~L~~N~l~~vn~g~l--------fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  275 NLETNRLQAVNEGWL--------FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ecccchhhhhhcccc--------cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            776666665544332        334455555555552222  223334445555555554444443321110       


Q ss_pred             ccccccc-----CccccCcccceeeccccccccc----ccCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371          230 DISEIIG-----SEHNIFARLEYLTMWRGTNVKS----VYPNPLPFPKLKKIQVFHCRQLKKLPLNS  287 (330)
Q Consensus       230 ~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~i~~c~~L~~lp~~~  287 (330)
                      .+..++.     -.+..+.+|++|+++.+ .+..    -......+++|+.|.+.+ ++++.+|...
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA  411 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA  411 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhh
Confidence            0000000     15566788888888876 2222    111233489999999998 6888777543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=3.7e-20  Score=169.35  Aligned_cols=188  Identities=20%  Similarity=0.207  Sum_probs=121.2

Q ss_pred             cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCc
Q 037371            5 KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGS   84 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   84 (330)
                      -+|..+.++..|.+|||+.|++.+.|..+..-+++-+|++++|.+ ..+|..++-+++.|-.||+++|++          
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrL----------  162 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRL----------  162 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchh----------
Confidence            488888888899999999998888888888888888888888866 677877788888888888888776          


Q ss_pred             cccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEcc
Q 037371           85 VLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSS  163 (330)
Q Consensus        85 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  163 (330)
                           . .+|+.++++.+|++|.+++|....++ +... ..+.+|+.|.+ +...  .....+.++..+.+|..+++++|
T Consensus       163 -----e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-LrQL-PsmtsL~vLhms~TqR--Tl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  163 -----E-MLPPQIRRLSMLQTLKLSNNPLNHFQ-LRQL-PSMTSLSVLHMSNTQR--TLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             -----h-hcCHHHHHHhhhhhhhcCCChhhHHH-HhcC-ccchhhhhhhcccccc--hhhcCCCchhhhhhhhhcccccc
Confidence                 2 57788888888888888888754322 1111 11233444444 2222  22223344556666666666666


Q ss_pred             CcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccccc
Q 037371          164 KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      .+..++...         -.+++|.+|+|++|.++.+. ..+...+|++|+++.|++..+
T Consensus       233 ~Lp~vPecl---------y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  233 NLPIVPECL---------YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             CCCcchHHH---------hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence            655432111         24455666666666555544 234455555555555555444

>PLN03210 Resistant to P

Probab=99.73  E-value=2.6e-17  Score=169.75  Aligned_cols=261  Identities=20%  Similarity=0.218  Sum_probs=173.7

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      .+..+|..| ...+|++|+++++.+..+|.++..+++|+.|+++++...+.+|.  ++.+++|+.|++++|..       
T Consensus       600 ~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-------  669 (1153)
T PLN03210        600 PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-------  669 (1153)
T ss_pred             CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-------
Confidence            456777766 35789999999998888988888999999999998877788886  88899999999999876       


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEE
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                              ...++..+.++++|+.|+++++..  +..+.... ...+|+.|.+ +|..  .....    ...++|+.|++
T Consensus       670 --------L~~lp~si~~L~~L~~L~L~~c~~--L~~Lp~~i-~l~sL~~L~Lsgc~~--L~~~p----~~~~nL~~L~L  732 (1153)
T PLN03210        670 --------LVELPSSIQYLNKLEDLDMSRCEN--LEILPTGI-NLKSLYRLNLSGCSR--LKSFP----DISTNISWLDL  732 (1153)
T ss_pred             --------ccccchhhhccCCCCEEeCCCCCC--cCccCCcC-CCCCCCEEeCCCCCC--ccccc----cccCCcCeeec
Confidence                    446788899999999999987542  11222111 2456777777 6644  11110    11345666666


Q ss_pred             EccCcceeeeCcccc---------------------cCccCCCCCCCccEEEEecc-cccccC-cccccCCccEEEEec-
Q 037371          161 GSSKLEEMKIDSTEE---------------------VKKLFRNGFRSLNTVVLRSC-RGKDLT-WLVFVQNLKQLNMQG-  216 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~L~~L~L~~~-~~~~l~-~l~~l~~L~~L~L~~-  216 (330)
                      +++.++.++......                     -.......+++|+.|++++| .+..+| .++++++|+.|+|++ 
T Consensus       733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            655544332110000                     00001123467888888888 555544 578888888888888 


Q ss_pred             ccccccccccccccccccccCccccCcccceeecccccccc--------------------cccCCCCCCCCccEEEEcc
Q 037371          217 FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVK--------------------SVYPNPLPFPKLKKIQVFH  276 (330)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--------------------~l~~~~~~~~~L~~L~i~~  276 (330)
                      +.++.++.             . ..+++|+.|++++|..+.                    .++.....+++|+.|.+.+
T Consensus       813 ~~L~~LP~-------------~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        813 INLETLPT-------------G-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCcCeeCC-------------C-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence            55666533             1 145666666666665544                    3333344588999999999


Q ss_pred             CCCCCCCCCCCcCCC-CCceEEeccHHH
Q 037371          277 CRQLKKLPLNSSSAK-GRRVVIEGTKKW  303 (330)
Q Consensus       277 c~~L~~lp~~~~~~~-~~~~~i~~~~~~  303 (330)
                      |++|+.+|.....+. .+...+.+|...
T Consensus       879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        879 CNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CCCcCccCcccccccCCCeeecCCCccc
Confidence            999999998776655 445566666544

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=3.4e-19  Score=163.11  Aligned_cols=254  Identities=21%  Similarity=0.257  Sum_probs=201.0

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhh-hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |.+.+.|..+...+++-+|+|++|+|..||..+ .++..|-+||+++|++ ..+|+. +.++..||+|++++|.+     
T Consensus       113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ-~RRL~~LqtL~Ls~NPL-----  185 (1255)
T KOG0444|consen  113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQ-IRRLSMLQTLKLSNNPL-----  185 (1255)
T ss_pred             hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHH-HHHHhhhhhhhcCCChh-----
Confidence            578899999999999999999999999999865 7899999999999977 788887 99999999999999888     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                ...-...+..++.|++|++++...+ ...+......+.+|..+++++++   -...+..+..+++|+.|+
T Consensus       186 ----------~hfQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  186 ----------NHFQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             ----------hHHHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccC---CCcchHHHhhhhhhheec
Confidence                      4456677888888999999876533 23344444455667788886655   344556788999999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccc--cccccccccccccccc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTME--EIISVDKLSDISEIIG  236 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~--~~~~~~~~~~~~~~~~  236 (330)
                      +++|+++.+....         +...+|+.|+++.|.++.+| ++..++.|+.|-+.+|++.  +|+             
T Consensus       252 LS~N~iteL~~~~---------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP-------------  309 (1255)
T KOG0444|consen  252 LSGNKITELNMTE---------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP-------------  309 (1255)
T ss_pred             cCcCceeeeeccH---------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc-------------
Confidence            9999998775432         45678999999999888876 6889999999999886654  442             


Q ss_pred             CccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCC-CCceEEec
Q 037371          237 SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-GRRVVIEG  299 (330)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~-~~~~~i~~  299 (330)
                      +.++.+..|+.+...++ .++-.+.....|+.|+.|.+.+ +.|-.+|...--+. .....+..
T Consensus       310 SGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  310 SGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             cchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccC
Confidence            37888999998888876 7777777777799999999876 78989998765544 44444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.67  E-value=4.8e-17  Score=160.90  Aligned_cols=290  Identities=35%  Similarity=0.471  Sum_probs=169.3

Q ss_pred             ccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371            4 SKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG   83 (330)
Q Consensus         4 ~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (330)
                      .++|++++++.+||+|+++++.+..+|.+++++..|.+|++..+.....+|. .+..|.+||+|.+..... +.      
T Consensus       585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~-~~------  656 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSAL-SN------  656 (889)
T ss_pred             CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccc-cc------
Confidence            4455555555555555555555555555555555555555544433222222 133355555555544321 11      


Q ss_pred             ccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE-
Q 037371           84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG-  161 (330)
Q Consensus        84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~-  161 (330)
                            .......+.++.+|+.+.+.......+..+.....+....+.+.+ .+    ........+..+.+|+.|.|. 
T Consensus       657 ------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~----~~~~~~~~~~~l~~L~~L~i~~  726 (889)
T KOG4658|consen  657 ------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC----SKRTLISSLGSLGNLEELSILD  726 (889)
T ss_pred             ------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc----ccceeecccccccCcceEEEEc
Confidence                  334455555555555555543332112222222222222222222 11    123334567788899999998 


Q ss_pred             ccCcceeeeCcccccCccCCC-CCCCccEEEEecc-cccccCcccccCCccEEEEec-ccccccccccccccccccccCc
Q 037371          162 SSKLEEMKIDSTEEVKKLFRN-GFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSE  238 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~  238 (330)
                      |...+ ....+.   ...... .|+++..+.+.+| ...++.|....|+|+.|.+.. ..++++.+.+.......   ..
T Consensus       727 ~~~~e-~~~~~~---~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~  799 (889)
T KOG4658|consen  727 CGISE-IVIEWE---ESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK---EL  799 (889)
T ss_pred             CCCch-hhcccc---cccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc---cE
Confidence            44432 212221   011112 2667888888888 888888888899999999998 77777766433322111   12


Q ss_pred             cccCccccee-ecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCC-C--CceEEeccHHHHhhccccchhh
Q 037371          239 HNIFARLEYL-TMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-G--RRVVIEGTKKWWEELQWEDQAT  314 (330)
Q Consensus       239 ~~~~~~L~~L-~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~-~--~~~~i~~~~~~~~~l~~~~~~~  314 (330)
                      .-.|.+++.+ .+.+...+..+......++.|+.+.+..||+++.+|....... .  .......+.+|.+.+.|.+..+
T Consensus       800 i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~  879 (889)
T KOG4658|consen  800 ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELT  879 (889)
T ss_pred             EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhh
Confidence            4567778888 5888888888888888888999999999999999998876533 1  2334445567889999999999


Q ss_pred             Hhhh
Q 037371          315 QNAF  318 (330)
Q Consensus       315 ~~~~  318 (330)
                      +.++
T Consensus       880 ~~~~  883 (889)
T KOG4658|consen  880 KLRF  883 (889)
T ss_pred             hhhc
Confidence            8887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.58  E-value=7.2e-18  Score=147.07  Aligned_cols=252  Identities=21%  Similarity=0.225  Sum_probs=154.0

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+..+-+.+.++..|.+|++..|++..+|+.++.+..++.++++.|++ ..+|++ +..+.+|++|+.++|..      
T Consensus        55 N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~-i~s~~~l~~l~~s~n~~------  126 (565)
T KOG0472|consen   55 NDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL-SELPEQ-IGSLISLVKLDCSSNEL------  126 (565)
T ss_pred             CchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH-hhccHH-Hhhhhhhhhhhccccce------
Confidence            3444555566677777777777777777777777777777777777755 556665 66777777777776555      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                                ..++.+++++-.|..++..+|.+...++-+   ..+..+..+.+.-+.   .....+....|+.|++|+.
T Consensus       127 ----------~el~~~i~~~~~l~dl~~~~N~i~slp~~~---~~~~~l~~l~~~~n~---l~~l~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  127 ----------KELPDSIGRLLDLEDLDATNNQISSLPEDM---VNLSKLSKLDLEGNK---LKALPENHIAMKRLKHLDC  190 (565)
T ss_pred             ----------eecCchHHHHhhhhhhhccccccccCchHH---HHHHHHHHhhccccc---hhhCCHHHHHHHHHHhccc
Confidence                      144556666666666666666554433211   112223333331111   1122222333777777777


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN  240 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      ..|.++.++++.         +.+.+|+.|+++.|.+..+|.++++..|++|+++.|.++-++.+            ...
T Consensus       191 ~~N~L~tlP~~l---------g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae------------~~~  249 (565)
T KOG0472|consen  191 NSNLLETLPPEL---------GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAE------------HLK  249 (565)
T ss_pred             chhhhhcCChhh---------cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHH------------Hhc
Confidence            666666554332         46677777777777777777777777777777777776666541            445


Q ss_pred             cCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCCCCceEEec
Q 037371          241 IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEG  299 (330)
Q Consensus       241 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~i~~  299 (330)
                      .++++..|++.+. ++++.+.+..-+.+|+.|++++ +.+..+|.....++.......|
T Consensus       250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leG  306 (565)
T KOG0472|consen  250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEG  306 (565)
T ss_pred             ccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcC
Confidence            6777777777776 6777666666667777777777 5677777766666544444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.50  E-value=1.5e-15  Score=132.36  Aligned_cols=216  Identities=21%  Similarity=0.243  Sum_probs=153.9

Q ss_pred             CCCccCChh-hhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~-l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+++||+. |+.+++||.|||+.|.|+.| |..|..+++|..|.+.++..++++|..+|.++..|+-|.+.-|.+    
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i----  152 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI----  152 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh----
Confidence            788999975 99999999999999999965 668999999999888774445899998899999999999888887    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHH-----hhc--------cc----------------------
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQK-----FLK--------YP----------------------  123 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~--------~~----------------------  123 (330)
                                 .......++.+++|+.|.+..|.+..+..     +..        ..                      
T Consensus       153 -----------~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  153 -----------NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             -----------cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence                       33556667777777766666554322111     000        00                      


Q ss_pred             ---------------------cccCceEEEE--E--EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCc
Q 037371          124 ---------------------KLVSITQSVW--V--ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKK  178 (330)
Q Consensus       124 ---------------------~~~~~L~~L~--l--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  178 (330)
                                           ....+++.+-  +  +|..  ...-....|..+++|+.|++++|+++.+...++     
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF-----  294 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF-----  294 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc--CCcChHHHHhhcccceEeccCCCccchhhhhhh-----
Confidence                                 0000000000  0  0000  011112237789999999999999999887776     


Q ss_pred             cCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371          179 LFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       179 ~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (330)
                         .....+++|.|..|.+..+.  .+.++..|+.|+|.+|+++.+.+.            .+....+|.+|.+..+
T Consensus       295 ---e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~------------aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  295 ---EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG------------AFQTLFSLSTLNLLSN  356 (498)
T ss_pred             ---cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc------------cccccceeeeeehccC
Confidence               77889999999999777765  578899999999999999988663            6666777777777643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.48  E-value=1.1e-13  Score=134.61  Aligned_cols=64  Identities=23%  Similarity=0.352  Sum_probs=47.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      |+++++|..+.  .+|+.|++.+|+++.+|.   .+++|++|++++|.+ ..+|..    .++|+.|++++|.+
T Consensus       211 ~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~L-tsLP~l----p~sL~~L~Ls~N~L  274 (788)
T PRK15387        211 SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPVL----PPGLLELSIFSNPL  274 (788)
T ss_pred             CCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCcc-CcccCc----ccccceeeccCCch
Confidence            46778888776  478899999998888875   357889999988866 456641    35677777777665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.44  E-value=1.7e-15  Score=132.37  Aligned_cols=228  Identities=19%  Similarity=0.194  Sum_probs=173.2

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+.++|..++++..++.++.+.+++.++|..++.+.+|++++.+.|++ .++|++ ++++-.|..|+..+|.+.     
T Consensus        78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~-i~~~~~l~dl~~~~N~i~-----  150 (565)
T KOG0472|consen   78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KELPDS-IGRLLDLEDLDATNNQIS-----  150 (565)
T ss_pred             chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-eecCch-HHHHhhhhhhhccccccc-----
Confidence            5678999999999999999999999999999999999999999999988 667776 999999999999998882     


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                                 ..++++..+.+|..+.+.+|......+-.  .. +..|+.|+.. ++  .-...+..++.+.+|..|++
T Consensus       151 -----------slp~~~~~~~~l~~l~~~~n~l~~l~~~~--i~-m~~L~~ld~~-~N--~L~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  151 -----------SLPEDMVNLSKLSKLDLEGNKLKALPENH--IA-MKRLKHLDCN-SN--LLETLPPELGGLESLELLYL  213 (565)
T ss_pred             -----------cCchHHHHHHHHHHhhccccchhhCCHHH--HH-HHHHHhcccc-hh--hhhcCChhhcchhhhHHHHh
Confidence                       56778888888888888887765432211  01 3335555541 11  24455667888888888888


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCc--ccccCCccEEEEecccccccccccccccccccccCc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW--LVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSE  238 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~  238 (330)
                      ..|++..++          .++++..|++++++.|.+..+++  +.+++++..|++.+|++++.++             .
T Consensus       214 ~~Nki~~lP----------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-------------e  270 (565)
T KOG0472|consen  214 RRNKIRFLP----------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-------------E  270 (565)
T ss_pred             hhcccccCC----------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-------------H
Confidence            877776442          34677788888888887766653  5578888888888888888865             4


Q ss_pred             cccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371          239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       239 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c  277 (330)
                      .-.+.+|++|++++. .+..++...+.+ .|+.|.+.+.
T Consensus       271 ~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence            556777888888877 677777777766 6777766664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.43  E-value=3.1e-15  Score=142.69  Aligned_cols=125  Identities=17%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             CCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc---------------------
Q 037371          141 RPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD---------------------  199 (330)
Q Consensus       141 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---------------------  199 (330)
                      .+...+..+.++++|+.|++++|++..++....        .++..|++|+++||.++.                     
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL--------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHH--------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce
Confidence            344455556666666666666666655433322        444555555555554433                     


Q ss_pred             --cCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371          200 --LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       200 --l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c  277 (330)
                        +|.+.+++.|+.+|++.|++..+...            ....-|+|++|+++++..   .......|+.++.+.... 
T Consensus       443 ~~fPe~~~l~qL~~lDlS~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~---l~~d~~~l~~l~~l~~~~-  506 (1081)
T KOG0618|consen  443 LSFPELAQLPQLKVLDLSCNNLSEVTLP------------EALPSPNLKYLDLSGNTR---LVFDHKTLKVLKSLSQMD-  506 (1081)
T ss_pred             eechhhhhcCcceEEecccchhhhhhhh------------hhCCCcccceeeccCCcc---cccchhhhHHhhhhhhee-
Confidence              34444566666666666666655331            111115667777766643   122233355555554444 


Q ss_pred             CCCCCCCCCCcC
Q 037371          278 RQLKKLPLNSSS  289 (330)
Q Consensus       278 ~~L~~lp~~~~~  289 (330)
                      ..++..|.+...
T Consensus       507 i~~~~~~d~~~n  518 (1081)
T KOG0618|consen  507 ITLNNTPDGNVN  518 (1081)
T ss_pred             cccCCCCccccc
Confidence            233344444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=3.2e-15  Score=142.61  Aligned_cols=211  Identities=19%  Similarity=0.188  Sum_probs=129.5

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.++.+|+-++.|.+|+.++...|.+..+|..+..+.+|++|.+..|++ ..+|+. ...+..|++|++..|.+..-   
T Consensus       251 n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~-le~~~sL~tLdL~~N~L~~l---  325 (1081)
T KOG0618|consen  251 NNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPF-LEGLKSLRTLDLQSNNLPSL---  325 (1081)
T ss_pred             hhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCc-ccccceeeeeeehhcccccc---
Confidence            4567788778889999999999988888888888888888888888866 666764 67788888888888876211   


Q ss_pred             ccCccccCCchhhHHH---------------hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcc
Q 037371           81 EEGSVLCDDAEPLMKE---------------LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN  145 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~---------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  145 (330)
                       +...... .......               -..++.|+.|.+.+|....  ...-.+....+|+.|.+..+.  ...+.
T Consensus       326 -p~~~l~v-~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd--~c~p~l~~~~hLKVLhLsyNr--L~~fp  399 (1081)
T KOG0618|consen  326 -PDNFLAV-LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD--SCFPVLVNFKHLKVLHLSYNR--LNSFP  399 (1081)
T ss_pred             -chHHHhh-hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc--cchhhhccccceeeeeecccc--cccCC
Confidence             1000000 0000000               0012234444454444321  111122334557777763333  34455


Q ss_pred             ccccccccCccEEEEEccCcceeeeCcccc-------------cCccCCCCCCCccEEEEecccccccC--cccccCCcc
Q 037371          146 VLHLAYMENLQELELGSSKLEEMKIDSTEE-------------VKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLK  210 (330)
Q Consensus       146 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~  210 (330)
                      ...+.+++.|++|++++|+++.+.......             ...+....+++|+.++++.|.+....  ....-|+|+
T Consensus       400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk  479 (1081)
T KOG0618|consen  400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK  479 (1081)
T ss_pred             HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence            556778888888888888877664222111             01234567789999999988665532  222238999


Q ss_pred             EEEEeccccccc
Q 037371          211 QLNMQGFTMEEI  222 (330)
Q Consensus       211 ~L~L~~~~l~~~  222 (330)
                      +|++++|.....
T Consensus       480 yLdlSGN~~l~~  491 (1081)
T KOG0618|consen  480 YLDLSGNTRLVF  491 (1081)
T ss_pred             eeeccCCccccc
Confidence            999999775333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.37  E-value=6.6e-13  Score=129.84  Aligned_cols=217  Identities=17%  Similarity=0.199  Sum_probs=128.8

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      +++++|..+.  ++|+.|++++|+++.+|..+.  .+|+.|++++|.+ ..+|.. +  ..+|+.|++++|.+       
T Consensus       189 ~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~-l--~~~L~~L~Ls~N~L-------  253 (754)
T PRK15370        189 GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPAT-L--PDTIQEMELSINRI-------  253 (754)
T ss_pred             CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChh-h--hccccEEECcCCcc-------
Confidence            5667787664  478888888888888887654  5788888888866 566764 3  24688888888777       


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEE
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                              . .++..+.  .+|+.|++++|.+..++.     ....+|+.|++ ++..   ... ...+  .+.|+.|++
T Consensus       254 --------~-~LP~~l~--s~L~~L~Ls~N~L~~LP~-----~l~~sL~~L~Ls~N~L---t~L-P~~l--p~sL~~L~L  311 (754)
T PRK15370        254 --------T-ELPERLP--SALQSLDLFHNKISCLPE-----NLPEELRYLSVYDNSI---RTL-PAHL--PSGITHLNV  311 (754)
T ss_pred             --------C-cCChhHh--CCCCEEECcCCccCcccc-----ccCCCCcEEECCCCcc---ccC-cccc--hhhHHHHHh
Confidence                    1 2233332  467888888776654332     12345777777 3322   211 1111  135677777


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN  240 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      ++|.++.+..           .-+++|+.|++++|.++.++.- -.++|+.|++++|.+..++.             .+ 
T Consensus       312 s~N~Lt~LP~-----------~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~-------------~l-  365 (754)
T PRK15370        312 QSNSLTALPE-----------TLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPE-------------TL-  365 (754)
T ss_pred             cCCccccCCc-----------cccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCCh-------------hh-
Confidence            7666654321           1235677777777765554421 13577777777776665532             11 


Q ss_pred             cCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371          241 IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       241 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                       .++|+.|++++| .+..++...  ..+|+.|++++ +++..+|..
T Consensus       366 -p~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~-N~L~~LP~s  406 (754)
T PRK15370        366 -PPTITTLDVSRN-ALTNLPENL--PAALQIMQASR-NNLVRLPES  406 (754)
T ss_pred             -cCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhcc-CCcccCchh
Confidence             256777777766 454444322  23566666666 355566543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=1.1e-14  Score=113.56  Aligned_cols=161  Identities=23%  Similarity=0.323  Sum_probs=107.4

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      +-.+.++..|-++.|+++.+|..+..+.+|+.|++.+|++ +++|.. ++++++|++|++.-|+.               
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~-issl~klr~lnvgmnrl---------------   91 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTS-ISSLPKLRILNVGMNRL---------------   91 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChh-hhhchhhhheecchhhh---------------
Confidence            4445666666777777777777777777777777776655 666665 77777777777766554               


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK  169 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  169 (330)
                       ..++.+++.++.|+.|+++.|...                           +......|..+..|+.|.++.|.++.+.
T Consensus        92 -~~lprgfgs~p~levldltynnl~---------------------------e~~lpgnff~m~tlralyl~dndfe~lp  143 (264)
T KOG0617|consen   92 -NILPRGFGSFPALEVLDLTYNNLN---------------------------ENSLPGNFFYMTTLRALYLGDNDFEILP  143 (264)
T ss_pred             -hcCccccCCCchhhhhhccccccc---------------------------cccCCcchhHHHHHHHHHhcCCCcccCC
Confidence             145666777777777766655421                           2223345666777777777777776553


Q ss_pred             eCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccccccc
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIIS  224 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~  224 (330)
                      ++         .+.+.+|+.|.+++|.+..++ .++.+..|++|++.+|.+..+++
T Consensus       144 ~d---------vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  144 PD---------VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             hh---------hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence            32         367788888888888555544 57778888888888888877766

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.33  E-value=2.7e-14  Score=111.43  Aligned_cols=99  Identities=29%  Similarity=0.420  Sum_probs=88.4

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.++.+|..+..+++|++|++++|.+.++|.+++.+++|+.|++..|++ ..+|.+ |+.++-|++||+.+|.. +    
T Consensus        43 NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-~~lprg-fgs~p~levldltynnl-~----  115 (264)
T KOG0617|consen   43 NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-NILPRG-FGSFPALEVLDLTYNNL-N----  115 (264)
T ss_pred             CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-hcCccc-cCCCchhhhhhcccccc-c----
Confidence            5788899999999999999999999999999999999999999999977 778998 99999999999999887 2    


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                               ...++..+-.+..|+.|+++.|.+.-
T Consensus       116 ---------e~~lpgnff~m~tlralyl~dndfe~  141 (264)
T KOG0617|consen  116 ---------ENSLPGNFFYMTTLRALYLGDNDFEI  141 (264)
T ss_pred             ---------cccCCcchhHHHHHHHHHhcCCCccc
Confidence                     44677888888999999999887543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.33  E-value=2.3e-13  Score=121.88  Aligned_cols=241  Identities=15%  Similarity=0.046  Sum_probs=149.3

Q ss_pred             CChhhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCC------CCchhhhCCCCCCcEEEeccCCC
Q 037371            6 LPSGISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLS------IIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         6 lp~~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~------~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      .+.-+..+.+|++|+++++.+.     .++..+...+.|++++++++.+.+      .++. ++..+++|+.|++++|.+
T Consensus        15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCC
Confidence            3445677788999999999884     466677788889999998886641      1223 367788999999999887


Q ss_pred             CCccccccCccccCCchhhHHHhccC---cCcceeeEEEechhh--HHHhhcccccc-CceEEEEE-EeCCCCCCCc---
Q 037371           75 WSVLEEEEGSVLCDDAEPLMKELLGL---KHLNVLSWSFRSSLA--VQKFLKYPKLV-SITQSVWV-ECGTYTRPPF---  144 (330)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~--~~~~~~~~~~~-~~L~~L~l-~~~~~~~~~~---  144 (330)
                                     .......+..+   ++|++|++++|.+..  ...+....... .+|++|++ ++.-   ...   
T Consensus        94 ---------------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l---~~~~~~  155 (319)
T cd00116          94 ---------------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL---EGASCE  155 (319)
T ss_pred             ---------------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC---CchHHH
Confidence                           22333344444   459999999887642  22222222233 67888888 5543   211   


Q ss_pred             -cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------CcccccCCccEEEEecc
Q 037371          145 -NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWLVFVQNLKQLNMQGF  217 (330)
Q Consensus       145 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l~~l~~L~~L~L~~~  217 (330)
                       ....+..+++|+.|+++.+.++.......    ......+++|++|++++|.+.+.      ..+..+++|++|+++++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRAL----AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHH----HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence             12345667789999998666653111100    00113447899999998855432      23556888999999988


Q ss_pred             cccccccccccccccccccCccccCcccceeeccccccccc-----ccCCCCCCCCccEEEEccC
Q 037371          218 TMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKS-----VYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~i~~c  277 (330)
                      .+.+........       ......+.|+.|++.+| .+.+     +......+++|+.++++++
T Consensus       232 ~l~~~~~~~l~~-------~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         232 NLTDAGAAALAS-------ALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             cCchHHHHHHHH-------HHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence            776542210000       01113478899999888 3331     1112233578888888874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=1.3e-12  Score=127.79  Aligned_cols=214  Identities=18%  Similarity=0.183  Sum_probs=139.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.++++|..+.  .+|++|++++|+++.+|..+.  .+|+.|++++|.+ ..+|.. +.  .+|+.|++++|.+      
T Consensus       209 N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~-l~--s~L~~L~Ls~N~L------  274 (754)
T PRK15370        209 NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPER-LP--SALQSLDLFHNKI------  274 (754)
T ss_pred             CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChh-Hh--CCCCEEECcCCcc------
Confidence            67888998765  589999999999999998664  4799999999977 578876 43  4799999999887      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                               . .++..+.  ++|+.|++++|.+..++.     ....+|+.|++..+.  .... ..  .-.++|+.|++
T Consensus       275 ---------~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~-----~lp~sL~~L~Ls~N~--Lt~L-P~--~l~~sL~~L~L  332 (754)
T PRK15370        275 ---------S-CLPENLP--EELRYLSVYDNSIRTLPA-----HLPSGITHLNVQSNS--LTAL-PE--TLPPGLKTLEA  332 (754)
T ss_pred             ---------C-ccccccC--CCCcEEECCCCccccCcc-----cchhhHHHHHhcCCc--cccC-Cc--cccccceeccc
Confidence                     2 2333332  479999999887654332     112346666662222  1211 11  12357888888


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN  240 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      ++|.++.+..           .-+++|+.|++++|.+..++. .-.++|+.|+|++|.+..+++             .. 
T Consensus       333 s~N~Lt~LP~-----------~l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt~LP~-------------~l-  386 (754)
T PRK15370        333 GENALTSLPA-----------SLPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALTNLPE-------------NL-  386 (754)
T ss_pred             cCCccccCCh-----------hhcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCCCCCH-------------hH-
Confidence            8777664421           113678888888886665542 113688888888888877744             11 


Q ss_pred             cCcccceeecccccccccccCCCC----CCCCccEEEEccCC
Q 037371          241 IFARLEYLTMWRGTNVKSVYPNPL----PFPKLKKIQVFHCR  278 (330)
Q Consensus       241 ~~~~L~~L~l~~~~~l~~l~~~~~----~~~~L~~L~i~~c~  278 (330)
                       ..+|+.|+++++ .+..++....    .++++..|.+.+.+
T Consensus       387 -~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        387 -PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             -HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence             236777777776 5555443321    24667777777643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.32  E-value=2.7e-13  Score=121.51  Aligned_cols=244  Identities=18%  Similarity=0.083  Sum_probs=157.0

Q ss_pred             cCChhhhccccccEeecCCCCCcc-------cChhhhcCcccceeccCCCCCCCCCchhhhCCCCC---CcEEEeccCCC
Q 037371            5 KLPSGISNLVSLHHLDLSRTNITG-------LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSK---LEVLRLLSRGR   74 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~~-------lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~---L~~L~l~~~~~   74 (330)
                      .+++.+...+.+++++++++.+..       ++..+..+++|+.|++++|.+....+.. +..+.+   |++|++++|.+
T Consensus        42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCcc
Confidence            456667778889999999986653       3346778899999999999886555543 555555   99999999887


Q ss_pred             CCccccccCccccCCchhhHHHhccC-cCcceeeEEEechh--hHHHhhccccccCceEEEEE-EeCCCCCCCcc----c
Q 037371           75 WSVLEEEEGSVLCDDAEPLMKELLGL-KHLNVLSWSFRSSL--AVQKFLKYPKLVSITQSVWV-ECGTYTRPPFN----V  146 (330)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~----~  146 (330)
                       +.    .+      .......+..+ ++|+.|++++|.+.  ....+......+..|++|++ ++.-   ....    .
T Consensus       121 -~~----~~------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~l~  186 (319)
T cd00116         121 -GD----RG------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI---GDAGIRALA  186 (319)
T ss_pred             -ch----HH------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC---chHHHHHHH
Confidence             21    00      12344567777 99999999998765  23333333344567899998 5432   2211    1


Q ss_pred             cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--Cccc-----ccCCccEEEEecccc
Q 037371          147 LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLV-----FVQNLKQLNMQGFTM  219 (330)
Q Consensus       147 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~-----~l~~L~~L~L~~~~l  219 (330)
                      ..+..+++|++|+++++.+++......    ......+++|++|++++|.+.+.  ..+.     ..+.|++|+++++.+
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l----~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASAL----AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHH----HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence            234566799999999777654322211    11134678999999999966642  2221     247999999999887


Q ss_pred             cccccccccccccccccCccccCcccceeecccccccccc-----cCCCCCC-CCccEEEEcc
Q 037371          220 EEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV-----YPNPLPF-PKLKKIQVFH  276 (330)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~-~~L~~L~i~~  276 (330)
                      ++....    .+.    .....+++|++++++++ .+.+.     ......+ +.|+++.|.+
T Consensus       263 ~~~~~~----~l~----~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         263 TDDGAK----DLA----EVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             CcHHHH----HHH----HHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            633211    000    14455689999999987 33332     1112234 5677777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.30  E-value=6.8e-12  Score=122.38  Aligned_cols=214  Identities=20%  Similarity=0.188  Sum_probs=120.6

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |+++++|..   .++|++|++++|+++.+|..   .++|+.|++++|.+ ..+|..    .++|+.|++++|++ +.   
T Consensus       232 N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l----p~~L~~L~Ls~N~L-t~---  296 (788)
T PRK15387        232 NNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL----PSGLCKLWIFGNQL-TS---  296 (788)
T ss_pred             CcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc----hhhcCEEECcCCcc-cc---
Confidence            577888853   57899999999999988853   46788888888865 455541    24577778877776 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccc-cCccEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYM-ENLQEL  158 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l-~~L~~L  158 (330)
                                  ++.   ..++|+.|++++|.+..++.      ....|+.|++ ++..   ..     +..+ .+|+.|
T Consensus       297 ------------LP~---~p~~L~~LdLS~N~L~~Lp~------lp~~L~~L~Ls~N~L---~~-----LP~lp~~Lq~L  347 (788)
T PRK15387        297 ------------LPV---LPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQL---TS-----LPTLPSGLQEL  347 (788)
T ss_pred             ------------ccc---cccccceeECCCCccccCCC------CcccccccccccCcc---cc-----ccccccccceE
Confidence                        121   23567777777776554332      1223555555 2211   11     1111 356666


Q ss_pred             EEEccCcceeeeCccccc---------CccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEV---------KKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS  229 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~  229 (330)
                      ++++|+++.++.......         ...+ ....+|+.|++++|.+..++..  .++|+.|++++|.+..++.     
T Consensus       348 dLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP-~l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~-----  419 (788)
T PRK15387        348 SVSDNQLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPM-----  419 (788)
T ss_pred             ecCCCccCCCCCCCcccceehhhccccccCc-ccccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCc-----
Confidence            666666554321000000         0000 1123466666666655444432  2456666666666555422     


Q ss_pred             cccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371          230 DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                                 .+.+|+.|+++++ .++.++.....+++|+.|++.+++
T Consensus       420 -----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        420 -----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             -----------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence                       1245677777765 566666665667788888887753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.29  E-value=1.6e-13  Score=119.90  Aligned_cols=246  Identities=16%  Similarity=0.211  Sum_probs=144.4

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc-CCCCCccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS-RGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~-~~~~~~~~   79 (330)
                      +|.++|..+-  ..-..++|..|+|+.||. .|+.+++||.||++.|.+...-|. +|.++.+|-.|-+.+ |+|     
T Consensus        57 GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI-----  128 (498)
T KOG4237|consen   57 GLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKI-----  128 (498)
T ss_pred             CcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCch-----
Confidence            4677886665  356778999999999887 678899999999999988655566 499999987777666 777     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                ...--..+..+..|+.|.+.=|....+..  ..+.-+.++..|.+  ..+......-..+..+..++.++
T Consensus       129 ----------~~l~k~~F~gL~slqrLllNan~i~Cir~--~al~dL~~l~lLsl--yDn~~q~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  129 ----------TDLPKGAFGGLSSLQRLLLNANHINCIRQ--DALRDLPSLSLLSL--YDNKIQSICKGTFQGLAAIKTLH  194 (498)
T ss_pred             ----------hhhhhhHhhhHHHHHHHhcChhhhcchhH--HHHHHhhhcchhcc--cchhhhhhccccccchhccchHh
Confidence                      22334567777777777665444322111  01111222333333  11111223333577777888888


Q ss_pred             EEccC-cceeee--------------CcccccC----------ccCCCCC-CCccEE---EEecccccc---cCcccccC
Q 037371          160 LGSSK-LEEMKI--------------DSTEEVK----------KLFRNGF-RSLNTV---VLRSCRGKD---LTWLVFVQ  207 (330)
Q Consensus       160 l~~~~-~~~~~~--------------~~~~~~~----------~~~~~~~-~~L~~L---~L~~~~~~~---l~~l~~l~  207 (330)
                      +.-|. +.+-..              +++....          ......+ ..++.+   -.+.|....   ..++..++
T Consensus       195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~  274 (498)
T KOG4237|consen  195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP  274 (498)
T ss_pred             hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence            77333 111111              1111000          0000000 112222   112221211   22577899


Q ss_pred             CccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCC-CCCCccEEEEccCCCCCCC
Q 037371          208 NLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFHCRQLKKL  283 (330)
Q Consensus       208 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~c~~L~~l  283 (330)
                      +|+.|+|++|.++++.+.            .+....+++.|.+.++ +++.+....+ .+..|+.|++.+ ++++.+
T Consensus       275 ~L~~lnlsnN~i~~i~~~------------aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~  337 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDG------------AFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTV  337 (498)
T ss_pred             cceEeccCCCccchhhhh------------hhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEE
Confidence            999999999999888552            5666778888888776 5666554433 378888888888 466554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=2.6e-11  Score=120.58  Aligned_cols=62  Identities=35%  Similarity=0.534  Sum_probs=28.9

Q ss_pred             hhccccccEeecCCC-CCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCC
Q 037371           10 ISNLVSLHHLDLSRT-NITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRG   73 (330)
Q Consensus        10 l~~l~~L~~L~L~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~   73 (330)
                      |..++.|++|||++| .+.++|..+++|.+||+|+++++.+ ..+|.. +.++.+|.+|++..+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~-l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSG-LGNLKKLIYLNLEVTG  629 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchH-HHHHHhhheecccccc
Confidence            444445555555544 2334444444555555555544433 344444 4444455555444433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.9e-11  Score=106.45  Aligned_cols=209  Identities=19%  Similarity=0.163  Sum_probs=99.8

Q ss_pred             hhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEe
Q 037371           33 LKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFR  111 (330)
Q Consensus        33 l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  111 (330)
                      =+++.+|+...++++.. ...+. .....+++++.||+++|-+++             .....+....+++|+.|+++.|
T Consensus       117 Qsn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~n-------------w~~v~~i~eqLp~Le~LNls~N  182 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHN-------------WFPVLKIAEQLPSLENLNLSSN  182 (505)
T ss_pred             hhhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHh-------------HHHHHHHHHhcccchhcccccc
Confidence            34566666666665533 22221 234456666666666665522             2234455556666666666665


Q ss_pred             chhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccE
Q 037371          112 SSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNT  189 (330)
Q Consensus       112 ~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  189 (330)
                      .+...-+-... ...+.|+.|.+ +|+.   +...+ ..+..+|.|..|.+..|.....  ..      .+..-+..|+.
T Consensus       183 rl~~~~~s~~~-~~l~~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~------~~~~i~~~L~~  250 (505)
T KOG3207|consen  183 RLSNFISSNTT-LLLSHLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILI--KA------TSTKILQTLQE  250 (505)
T ss_pred             cccCCccccch-hhhhhhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccce--ec------chhhhhhHHhh
Confidence            54321110000 12344566666 5544   22222 2244566666666664421101  00      01123455677


Q ss_pred             EEEeccccccc---CcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCC--C
Q 037371          190 VVLRSCRGKDL---TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNP--L  264 (330)
Q Consensus       190 L~L~~~~~~~l---~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~--~  264 (330)
                      |+|++|.+.+.   +..+.+|.|+.|.++.+.+.++..-      ...+.-....|++|++|.+..+ .+++|....  .
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~------d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~  323 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP------DVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR  323 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCC------CccchhhhcccccceeeecccC-ccccccccchhh
Confidence            77776644333   3456677777777766666555210      0000012355677777766665 344433321  1


Q ss_pred             CCCCccEEEE
Q 037371          265 PFPKLKKIQV  274 (330)
Q Consensus       265 ~~~~L~~L~i  274 (330)
                      ..++|+.|.+
T Consensus       324 ~l~nlk~l~~  333 (505)
T KOG3207|consen  324 TLENLKHLRI  333 (505)
T ss_pred             ccchhhhhhc
Confidence            2445555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=9.1e-11  Score=104.13  Aligned_cols=188  Identities=19%  Similarity=0.172  Sum_probs=130.6

Q ss_pred             hccccccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCc-hhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371           11 SNLVSLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIP-PQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      +++++|+.+.|.++.+...+.  ....|++++.||++.|-+..-.| ..++..+++|+.|+++.|+....          
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~----------  187 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF----------  187 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC----------
Confidence            567889999999998775553  56789999999999985532222 23467899999999999987322          


Q ss_pred             CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371           88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEE  167 (330)
Q Consensus        88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (330)
                        .....  -..+.+|+.|.++.|..+ ..++......+++++.|++.-+.  ..........-+..|+.|++++|.+.+
T Consensus       188 --~~s~~--~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  188 --ISSNT--TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNNNLID  260 (505)
T ss_pred             --ccccc--hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCCcccc
Confidence              11111  116778888889988776 56666666778888888882221  012222334567789999999776654


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecccccccC---c-----ccccCCccEEEEeccccccc
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT---W-----LVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~---~-----l~~l~~L~~L~L~~~~l~~~  222 (330)
                      ....       ...+.++.|..|.++.|++..+.   .     ...+++|++|++..|++.++
T Consensus       261 ~~~~-------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  261 FDQG-------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             cccc-------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            4321       22478899999999998665532   2     35689999999999888777

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2e-11  Score=103.42  Aligned_cols=223  Identities=21%  Similarity=0.161  Sum_probs=146.8

Q ss_pred             ccEeecCCCCCcccChhhhcCcc--cceeccCCCCCCCCCch--hhhCCC-CCCcEEEeccCCCCCccccccCccccCCc
Q 037371           16 LHHLDLSRTNITGLPQELKALEK--LRYLNLDHTRFLSIIPP--QLISGF-SKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~--L~~L~l~~~~~~~~~p~--~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      -+.+|+.+-.+.  |..++.+..  ..++.+....  ..-|.  ..+.-. ..||+||+++..+ +             .
T Consensus       138 W~~lDl~~r~i~--p~~l~~l~~rgV~v~Rlar~~--~~~prlae~~~~frsRlq~lDLS~s~i-t-------------~  199 (419)
T KOG2120|consen  138 WQTLDLTGRNIH--PDVLGRLLSRGVIVFRLARSF--MDQPRLAEHFSPFRSRLQHLDLSNSVI-T-------------V  199 (419)
T ss_pred             eeeeccCCCccC--hhHHHHHHhCCeEEEEcchhh--hcCchhhhhhhhhhhhhHHhhcchhhe-e-------------H
Confidence            356666665554  444555444  3344443321  22221  112222 2499999999777 2             3


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEE-ccCcce
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELG-SSKLEE  167 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~-~~~~~~  167 (330)
                      ..+...+..+.+|+.|.+.++....  ++........+|+.|++ .|++  .+.... ..+..+..|.+|+++ |...++
T Consensus       200 stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~~LNlsWc~l~~~  275 (419)
T KOG2120|consen  200 STLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLDELNLSWCFLFTE  275 (419)
T ss_pred             HHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhHhhcCchHhhccch
Confidence            4567778899999999999887653  22222344567999999 8887  333332 347899999999999 877765


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecc--cc--cccCcc-cccCCccEEEEec-ccccccccccccccccccccCcccc
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSC--RG--KDLTWL-VFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSEHNI  241 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~--~~l~~l-~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      ..--..       ..--.+|+.|+|+||  ++  .++..+ ..+|+|..|+|++ +.++.-..            ..+..
T Consensus       276 ~Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~k  336 (419)
T KOG2120|consen  276 KVTVAV-------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFK  336 (419)
T ss_pred             hhhHHH-------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH------------HHHHh
Confidence            421111       122367999999999  33  345444 5699999999999 66655322            26778


Q ss_pred             Ccccceeecccccccccc-cCCCCCCCCccEEEEccCCC
Q 037371          242 FARLEYLTMWRGTNVKSV-YPNPLPFPKLKKIQVFHCRQ  279 (330)
Q Consensus       242 ~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~  279 (330)
                      |+.|++|.++.|..+..- .......|+|..|++.+|-.
T Consensus       337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             cchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            999999999999776542 33355699999999999854

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=3.3e-10  Score=91.39  Aligned_cols=105  Identities=20%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             hhhccccccEeecCCCCCcccChhhh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      .+.+...+++|+|+++.|+.+. .++ .+.+|+.|++++|.+ ..++.  +..+++|++|++++|.+             
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~--l~~L~~L~~L~L~~N~I-------------   76 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEG--LPGLPRLKTLDLSNNRI-------------   76 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---------------
T ss_pred             cccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccC--ccChhhhhhcccCCCCC-------------
Confidence            3445567899999999888773 465 578899999999866 55554  77889999999999888             


Q ss_pred             CCchhhHHHh-ccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371           88 DDAEPLMKEL-LGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        88 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  134 (330)
                        .. +...+ ..+++|++|.+++|.+..+.++... ..+++|+.|++
T Consensus        77 --~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L  120 (175)
T PF14580_consen   77 --SS-ISEGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSL  120 (175)
T ss_dssp             ---S--CHHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-
T ss_pred             --Cc-cccchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcceeec
Confidence              21 22233 3578888888888876554443222 22444555555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=1.3e-09  Score=87.85  Aligned_cols=69  Identities=32%  Similarity=0.334  Sum_probs=12.8

Q ss_pred             CCcccChhhhcCcccceeccCCCCCCCCCchhhhC-CCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCc
Q 037371           25 NITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS-GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHL  103 (330)
Q Consensus        25 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  103 (330)
                      .|.+.|. +.+..+++.|++++|.+ ..+..  ++ .+.+|+.|++++|.+                 .....+..+++|
T Consensus         8 ~i~~~~~-~~n~~~~~~L~L~~n~I-~~Ie~--L~~~l~~L~~L~Ls~N~I-----------------~~l~~l~~L~~L   66 (175)
T PF14580_consen    8 MIEQIAQ-YNNPVKLRELNLRGNQI-STIEN--LGATLDKLEVLDLSNNQI-----------------TKLEGLPGLPRL   66 (175)
T ss_dssp             ------------------------------S----TT-TT--EEE-TTS-------------------S--TT----TT-
T ss_pred             ccccccc-ccccccccccccccccc-ccccc--hhhhhcCCCEEECCCCCC-----------------ccccCccChhhh
Confidence            3444443 34555677788877766 33332  44 467778888887777                 222345556667


Q ss_pred             ceeeEEEechh
Q 037371          104 NVLSWSFRSSL  114 (330)
Q Consensus       104 ~~L~l~~~~~~  114 (330)
                      ++|++++|.+.
T Consensus        67 ~~L~L~~N~I~   77 (175)
T PF14580_consen   67 KTLDLSNNRIS   77 (175)
T ss_dssp             -EEE--SS---
T ss_pred             hhcccCCCCCC
Confidence            77766666533

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.1e-09  Score=93.06  Aligned_cols=216  Identities=18%  Similarity=0.105  Sum_probs=144.1

Q ss_pred             hhccccccEeecCCCC-------Cc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc--
Q 037371           10 ISNLVSLHHLDLSRTN-------IT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL--   78 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~-------~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~--   78 (330)
                      +.-+..|.+|-+++..       |.  .+|..+.-+.+|+.+.++.|.- ..+-. +...-+.|+++.+....+...+  
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~-~~~~kptl~t~~v~~s~~~~~~~l  255 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVD-IELLKPTLQTICVHNTTIQDVPSL  255 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheec-eeecCchhheeeeecccccccccc
Confidence            3445678888887652       22  4566677788899999988743 22222 1234456888887765542211  


Q ss_pred             --cc-c--cCccccC-CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccc
Q 037371           79 --EE-E--EGSVLCD-DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM  152 (330)
Q Consensus        79 --~~-~--~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l  152 (330)
                        +. +  +|+..++ ..+.....+..-+.|.++++++|.+..+.+-+   .+.+.++.|+++.+.    ...+..++.+
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~----i~~v~nLa~L  328 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESV---KLAPKLRRLILSQNR----IRTVQNLAEL  328 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhh---hhccceeEEeccccc----eeeehhhhhc
Confidence              00 0  0111111 01112222223345778899999887776544   456678888884333    2233458899


Q ss_pred             cCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccccccccccc
Q 037371          153 ENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDIS  232 (330)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  232 (330)
                      ++|+.||+++|.++.+.. |        ...+-|++.|.|.+|.+.+++.++.+-+|..|++++|+++.+...       
T Consensus       329 ~~L~~LDLS~N~Ls~~~G-w--------h~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV-------  392 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLAECVG-W--------HLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEV-------  392 (490)
T ss_pred             ccceEeecccchhHhhhh-h--------HhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHh-------
Confidence            999999999998886532 2        357889999999999999999999999999999999999888432       


Q ss_pred             ccccCccccCcccceeeccccc
Q 037371          233 EIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                          ..++.+|.|+.+.+.+++
T Consensus       393 ----~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  393 ----NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ----cccccccHHHHHhhcCCC
Confidence                378899999999988874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=5.5e-09  Score=69.35  Aligned_cols=60  Identities=30%  Similarity=0.510  Sum_probs=52.9

Q ss_pred             ccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371           14 VSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      ++|++|++++|++..+|. .+..+++|++|++++|.+ ..+++.++.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCcC
Confidence            478999999999999886 678899999999999987 677776799999999999999864

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3.6e-10  Score=95.92  Aligned_cols=183  Identities=17%  Similarity=0.163  Sum_probs=92.9

Q ss_pred             ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH
Q 037371           38 KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ  117 (330)
Q Consensus        38 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  117 (330)
                      .|+++|++...+...--..+++.+.+|+.|.+.++.+               ...+...+++..+|+.|+++.+....-.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccchh
Confidence            3566666554443222233455566666666666555               4455555666666666666654432222


Q ss_pred             HhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE-cc-CcceeeeCcccccCccCCCCCCCccEEEEecc
Q 037371          118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG-SS-KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC  195 (330)
Q Consensus       118 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  195 (330)
                      .+.-....+..|.+|++.|.........+..-.--++|..|+++ +. .+..-..+..       ...+++|..|+|++|
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-------~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-------VRRCPNLVHLDLSDS  323 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-------HHhCCceeeeccccc
Confidence            22222333445555555333211111111111223456666666 21 1111111111       245777888888888


Q ss_pred             -cccc--cCcccccCCccEEEEec-ccccccccccccccccccccCccccCcccceeeccccc
Q 037371          196 -RGKD--LTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       196 -~~~~--l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                       .+++  ...+.+++.|++|.++. ..+   ++...         ..+...|+|.+|++.+|-
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~---------~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETL---------LELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCC---ChHHe---------eeeccCcceEEEEecccc
Confidence             5544  33566788888888887 333   22110         156677888888888883

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.74  E-value=2e-09  Score=93.26  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc------cCcccccCCccEEEEeccccccc
Q 037371          149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD------LTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +...+.|+.+.+..|.+..-....    -.....++++|+.|+|++|.++.      ...+..+++|+.|.++++.++.-
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~a----l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~  256 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTA----LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE  256 (382)
T ss_pred             HHhccccceEEEecccccCchhHH----HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence            445556666666544433211100    01112455666666666663332      11345566666666666555544


Q ss_pred             ccccccccccccccCccccCcccceeeccccccccc----ccCCCCCCCCccEEEEccC
Q 037371          223 ISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKS----VYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~i~~c  277 (330)
                      +.....-       +....+|+|+.|.+.++.--.+    +.......|.|+.|.+.+|
T Consensus       257 Ga~a~~~-------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  257 GAIAFVD-------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             cHHHHHH-------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            3321111       1223356666666666522111    1111223566666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.72  E-value=1e-08  Score=94.84  Aligned_cols=185  Identities=25%  Similarity=0.322  Sum_probs=129.8

Q ss_pred             ChhhhccccccEeecCCCCCcccChhhhcCc-ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371            7 PSGISNLVSLHHLDLSRTNITGLPQELKALE-KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus         7 p~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      +..+..+..++.|++.++.+.++|.....+. +|+.|++++|.+ ..+|.. ++.+++|+.|+++.|.+ +         
T Consensus       109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l-~---------  176 (394)
T COG4886         109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDL-S---------  176 (394)
T ss_pred             chhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchh-h---------
Confidence            3445666778999999999888888777775 899999999866 666544 78899999999999877 1         


Q ss_pred             ccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCc
Q 037371           86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKL  165 (330)
Q Consensus        86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  165 (330)
                            .++.....++.|+.|++++|.+..++...   .....|++|.+.-+.   .......+..+.++..+.+.++++
T Consensus       177 ------~l~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         177 ------DLPKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ------hhhhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCc---ceecchhhhhcccccccccCCcee
Confidence                  34444447888899999988876655432   123346666662211   122334566777777777666666


Q ss_pred             ceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccc
Q 037371          166 EEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIIS  224 (330)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~  224 (330)
                      ... +.        ..+.+++++.|++++|.+.+++.++.+.+|+.|+++++.+..+.+
T Consensus       245 ~~~-~~--------~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         245 EDL-PE--------SIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             eec-cc--------hhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence            542 11        135667789999998888887778888999999998877666544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=6.7e-09  Score=90.03  Aligned_cols=230  Identities=17%  Similarity=0.101  Sum_probs=130.2

Q ss_pred             hhhccccccEeecCCCC---Cc-ccChh-------hhcCcccceeccCCCCCCCCCch---hhhCCCCCCcEEEeccCCC
Q 037371            9 GISNLVSLHHLDLSRTN---IT-GLPQE-------LKALEKLRYLNLDHTRFLSIIPP---QLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~---~~-~lp~~-------l~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~   74 (330)
                      .+.+.++|+..+++.-.   .. ++|..       +..+++|++|+|++|.+.-..+.   .++++++.|++|++.+|++
T Consensus        53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            34555666666666531   11 45542       34577888888888877433332   3467888888888888887


Q ss_pred             CCccccccCccccC--CchhhHHHhccCcCcceeeEEEechhh--HHHhhccccccCceEEEEEEeCCCCCCCc--cccc
Q 037371           75 WSVLEEEEGSVLCD--DAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKYPKLVSITQSVWVECGTYTRPPF--NVLH  148 (330)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~  148 (330)
                       ..   ..+..-+.  -.-...+....-++||++...+|+...  ...+.......+.|+.+.+..+.+...+.  ....
T Consensus       133 -g~---~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea  208 (382)
T KOG1909|consen  133 -GP---EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA  208 (382)
T ss_pred             -Ch---hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence             22   11100000  000012234456678888888876533  22333334445667777774443212222  2345


Q ss_pred             cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------Ccc-cccCCccEEEEecccccc
Q 037371          149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWL-VFVQNLKQLNMQGFTMEE  221 (330)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l-~~l~~L~~L~L~~~~l~~  221 (330)
                      +.++++|+.||+..|.++.-.....    .-....+++|+.|++++|.+..-      ..+ ...|+|+.|.+.+|.++.
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~L----akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVAL----AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHH----HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            7788888888888776653221111    01124567788888888855441      122 347888888888877654


Q ss_pred             cccccccccccccccCccccCcccceeeccccc
Q 037371          222 IISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                      -......        ......|.|++|.+++|.
T Consensus       285 da~~~la--------~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  285 DAALALA--------ACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHH--------HHHhcchhhHHhcCCccc
Confidence            3221000        133447888888888873

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.61  E-value=2.2e-09  Score=98.39  Aligned_cols=92  Identities=26%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             CccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      +-.+|..++++..|.+|+++.|.++.+|..+..|+ |+.|-+++|++ +.+|+. ++....|.+||.+.|.+        
T Consensus       110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl-~~lp~~-ig~~~tl~~ld~s~nei--------  178 (722)
T KOG0532|consen  110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL-TSLPEE-IGLLPTLAHLDVSKNEI--------  178 (722)
T ss_pred             ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc-ccCCcc-cccchhHHHhhhhhhhh--------
Confidence            33444445555555555555555444444443332 44444444433 444444 44444555555555444        


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                              ..++..++.+.+|+.|.+..|..
T Consensus       179 --------~slpsql~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  179 --------QSLPSQLGYLTSLRDLNVRRNHL  201 (722)
T ss_pred             --------hhchHHhhhHHHHHHHHHhhhhh
Confidence                    13444555555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.59  E-value=1e-07  Score=92.80  Aligned_cols=84  Identities=24%  Similarity=0.335  Sum_probs=68.2

Q ss_pred             cccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371           15 SLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL   93 (330)
Q Consensus        15 ~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~   93 (330)
                      .++.|+|+++.+. .+|..+..+++|+.|++++|.+.+.+|.. ++.+++|+.|++++|.+               .+..
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l---------------sg~i  482 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF---------------NGSI  482 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC---------------CCCC
Confidence            3677888888877 67888888888888888888887788876 88888888888888877               4467


Q ss_pred             HHHhccCcCcceeeEEEechh
Q 037371           94 MKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        94 ~~~l~~l~~L~~L~l~~~~~~  114 (330)
                      +..++++++|+.|++++|...
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             chHHhcCCCCCEEECcCCccc
Confidence            778888888888888888765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.56  E-value=1.2e-08  Score=93.73  Aligned_cols=182  Identities=22%  Similarity=0.226  Sum_probs=132.9

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+.++|..++-+..|+.+.+..|.+..+|..+.++..|.+|+++.|++ ..+|.. +..|+ |+.|.+++|++      
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~-lC~lp-Lkvli~sNNkl------  155 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDG-LCDLP-LKVLIVSNNKL------  155 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChh-hhcCc-ceeEEEecCcc------
Confidence            5678999999999999999999999999999999999999999999976 677876 77777 99999999887      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                                +.++.+++.+.+|..|+.+.|.+..+..-.   .....|+.|.+.-+.   .......+..+ .|..||+
T Consensus       156 ----------~~lp~~ig~~~tl~~ld~s~nei~slpsql---~~l~slr~l~vrRn~---l~~lp~El~~L-pLi~lDf  218 (722)
T KOG0532|consen  156 ----------TSLPEEIGLLPTLAHLDVSKNEIQSLPSQL---GYLTSLRDLNVRRNH---LEDLPEELCSL-PLIRLDF  218 (722)
T ss_pred             ----------ccCCcccccchhHHHhhhhhhhhhhchHHh---hhHHHHHHHHHhhhh---hhhCCHHHhCC-ceeeeec
Confidence                      257788888899999999988765543211   112223444441111   12223344544 4888999


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCc----ccccCCccEEEEecc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW----LVFVQNLKQLNMQGF  217 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~----l~~l~~L~~L~L~~~  217 (330)
                      +||++..+....         .+++.|++|.|.+|.++.+++    -|..-=.++|+...+
T Consensus       219 ScNkis~iPv~f---------r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  219 SCNKISYLPVDF---------RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ccCceeecchhh---------hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            999998775443         578889999999997777652    233444566666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.52  E-value=3.6e-09  Score=93.70  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             cccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecc-ccccc--Ccc-cccCCccEEEEecccccccccc
Q 037371          151 YMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDL--TWL-VFVQNLKQLNMQGFTMEEIISV  225 (330)
Q Consensus       151 ~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l--~~l-~~l~~L~~L~L~~~~l~~~~~~  225 (330)
                      .+..|+.|..+ |+.+++......       ..+..+|+.|-+++| .+++.  ..+ .+.+.|+.+++.+.....-.  
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aL-------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--  362 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWAL-------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--  362 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHH-------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--
Confidence            44555666655 555443332222       234466667777666 44442  223 24566666666652211110  


Q ss_pred             cccccccccccCccccCcccceeecccccccccc-----cCCCCCCCCccEEEEccCCCCCC
Q 037371          226 DKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV-----YPNPLPFPKLKKIQVFHCRQLKK  282 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~i~~c~~L~~  282 (330)
                       +..       +.....+.|+.+.+++|..+.+.     .....+...|+.+.+.+||.+..
T Consensus       363 -tL~-------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  363 -TLA-------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             -hHh-------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence             000       13445677777777766555553     11223355666777777766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=2e-08  Score=93.30  Aligned_cols=179  Identities=20%  Similarity=0.214  Sum_probs=117.3

Q ss_pred             hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371            8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus         8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      ..++.+++|+.|++.+|++.++...+..+++|++|++++|.+ +.+..  +..++.|+.|++.+|.+             
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~--l~~l~~L~~L~l~~N~i-------------  152 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEG--LSTLTLLKELNLSGNLI-------------  152 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheecccccc-ccccc--hhhccchhhheeccCcc-------------
Confidence            347788899999999999988865578899999999999976 55554  77888899999999888             


Q ss_pred             CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371           88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEE  167 (330)
Q Consensus        88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (330)
                          .-...+..++.|+.+++++|.+..+....  ......++.++++-+    .......+..+..+..+++..+.++.
T Consensus       153 ----~~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n----~i~~i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  153 ----SDISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGN----SIREIEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             ----hhccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCC----chhcccchHHHHHHHHhhccccccee
Confidence                33445666888899999988877665520  122333444454111    11122233444444444555555554


Q ss_pred             eeeCcccccCccCCCCCC--CccEEEEeccccccc-CcccccCCccEEEEeccccccc
Q 037371          168 MKIDSTEEVKKLFRNGFR--SLNTVVLRSCRGKDL-TWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~l-~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +..          ...+.  .|+.+++.++.+... ..+..++.+..|++.++.+..+
T Consensus       223 ~~~----------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  223 LEG----------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             ccC----------cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence            421          11222  378888888866665 5566777788888877666555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.43  E-value=3.5e-07  Score=84.60  Aligned_cols=189  Identities=22%  Similarity=0.253  Sum_probs=102.6

Q ss_pred             EeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCC-CCcEEEeccCCCCCccccccCccccCCchhhHHH
Q 037371           18 HLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS-KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKE   96 (330)
Q Consensus        18 ~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (330)
                      .+++..+.+..-+..+..+..++.|++..+.+ ..++.. ...+. +|+.|++++|.+               . .++..
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i-~~i~~~-~~~~~~nL~~L~l~~N~i---------------~-~l~~~  158 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPL-IGLLKSNLKELDLSDNKI---------------E-SLPSP  158 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccc-ccCccc-cccchhhcccccccccch---------------h-hhhhh
Confidence            46666665543344556667788888887766 556653 55553 788888888776               1 23356


Q ss_pred             hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccc-ccccCccEEEEEccCcceeeeCcccc
Q 037371           97 LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      ++.+++|+.|.++.|.+..+.....   ....|+.|+++-+.    ....... .....|++|.++.|.....       
T Consensus       159 ~~~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N~----i~~l~~~~~~~~~L~~l~~~~N~~~~~-------  224 (394)
T COG4886         159 LRNLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGNK----ISDLPPEIELLSALEELDLSNNSIIEL-------  224 (394)
T ss_pred             hhccccccccccCCchhhhhhhhhh---hhhhhhheeccCCc----cccCchhhhhhhhhhhhhhcCCcceec-------
Confidence            7788888888888777655443221   23334444441111    0111111 2333366666664421111       


Q ss_pred             cCccCCCCCCCccEEEEecccccc-cCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKD-LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                        ......+.++..+.+.++.+.. +..++.+++++.|+++++.+..+.              .++.+.+|+.|++++..
T Consensus       225 --~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~--------------~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         225 --LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--------------SLGSLTNLRELDLSGNS  288 (394)
T ss_pred             --chhhhhcccccccccCCceeeeccchhccccccceeccccccccccc--------------cccccCccCEEeccCcc
Confidence              1112344555555555554444 334556666666666666665551              34555666666666553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=3.7e-08  Score=84.02  Aligned_cols=133  Identities=20%  Similarity=0.215  Sum_probs=83.3

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      +...+.|.++||++|.|+.+-.++.-+++++.|+++.|.+ ..+..  +..+++|++||+++|.. +             
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~n--La~L~~L~~LDLS~N~L-s-------------  342 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQN--LAELPQLQLLDLSGNLL-A-------------  342 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccce-eeehh--hhhcccceEeecccchh-H-------------
Confidence            3445678889999998888888888899999999999866 33333  67888999999999776 2             


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcc
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLE  166 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  166 (330)
                        .+...-.++-++++|.++.|.+..+..+.+    ..+|..|++.-+.+ .....+..++++|+|+.+.+-+|.+.
T Consensus       343 --~~~Gwh~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  343 --ECVGWHLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             --hhhhhHhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence              233334467788888888877655444332    12244444411110 12222344555555555555544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=5.3e-08  Score=82.94  Aligned_cols=68  Identities=19%  Similarity=0.092  Sum_probs=41.5

Q ss_pred             CCCCccEEEEecccccccC---cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371          183 GFRSLNTVVLRSCRGKDLT---WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV  259 (330)
Q Consensus       183 ~~~~L~~L~L~~~~~~~l~---~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  259 (330)
                      .|+++..+.+..|.+...+   ....+|.+--|.|+.+++..+...           -.+..|+.|..|++.+.+-++.+
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv-----------D~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV-----------DALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH-----------HHHcCCchhheeeccCCcccccc
Confidence            4667777777666444433   244566666777777776666321           14556777777777777666555


Q ss_pred             cC
Q 037371          260 YP  261 (330)
Q Consensus       260 ~~  261 (330)
                      ..
T Consensus       266 ~~  267 (418)
T KOG2982|consen  266 RG  267 (418)
T ss_pred             cC
Confidence            44

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.39  E-value=2e-08  Score=89.07  Aligned_cols=249  Identities=21%  Similarity=0.184  Sum_probs=151.5

Q ss_pred             hhccccccEeecCCCC-Cc--ccChhhhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371           10 ISNLVSLHHLDLSRTN-IT--GLPQELKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~-~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      -.++++++.|++.+|. ++  .+-..-..+++|++|++..|...+...- .....+++|++|+++.|..      |.+  
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q------i~~--  231 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ------ISG--  231 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch------hhc--
Confidence            4677888888888884 33  1211224688888888888755454332 2345688888888888765      211  


Q ss_pred             ccCCchhhHHHhccCcCcceeeEEEechhhHH--------------------------HhhccccccCceEEEEE-EeCC
Q 037371           86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--------------------------KFLKYPKLVSITQSVWV-ECGT  138 (330)
Q Consensus        86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------------~~~~~~~~~~~L~~L~l-~~~~  138 (330)
                           .....-.+.++.++.+...++......                          .+...-..+..|+.|.. +|..
T Consensus       232 -----~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~  306 (483)
T KOG4341|consen  232 -----NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD  306 (483)
T ss_pred             -----CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC
Confidence                 111122223333333333322211111                          12222223444666666 5655


Q ss_pred             CCCCCcccccc-ccccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecc-ccccc--C-cccccCCccEE
Q 037371          139 YTRPPFNVLHL-AYMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDL--T-WLVFVQNLKQL  212 (330)
Q Consensus       139 ~~~~~~~~~~l-~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l--~-~l~~l~~L~~L  212 (330)
                        ........+ .+.++|+.|.++ |.++++......       -..++.|+.+++.+| .+.+.  . .-.+++.|+.|
T Consensus       307 --~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  307 --ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             --CchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence              344444444 477899999999 888887654433       245788999999999 33332  2 23468999999


Q ss_pred             EEec-ccccccccccccccccccccCccccCcccceeecccccccccccCCCCC-CCCccEEEEccCCCCCCCCCCCc
Q 037371          213 NMQG-FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       213 ~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                      .+++ ..+.+.+...    +.    ........|+.+.+.+|+.+.+-...... +++||.+.+.+|....+-++..+
T Consensus       378 slshce~itD~gi~~----l~----~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~  447 (483)
T KOG4341|consen  378 SLSHCELITDEGIRH----LS----SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF  447 (483)
T ss_pred             Chhhhhhhhhhhhhh----hh----hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence            9998 3443331110    00    14456788999999999998886655443 88999999999988776555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=1.2e-07  Score=62.82  Aligned_cols=60  Identities=25%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             cccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371           37 EKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        37 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                      ++|++|++++|++ ..+|..++.++++|++|++++|.+               ....+..+..+++|+.|++++|.
T Consensus         1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l---------------~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNL---------------TSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSE---------------SEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCcc---------------CccCHHHHcCCCCCCEEeCcCCc
Confidence            5799999999977 678877799999999999999998               43556678999999999998775

...

>PLN03150 hypothetical protein; Provisional

Probab=98.34  E-value=7.2e-07  Score=86.98  Aligned_cols=68  Identities=28%  Similarity=0.499  Sum_probs=34.7

Q ss_pred             CChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            6 LPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         6 lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      +|..++++++|++|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|.. ++++++|++|++++|.+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSL  502 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCcc
Confidence            4444555555555555555544 44545555555555555555554444443 45555555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=2e-06  Score=52.61  Aligned_cols=40  Identities=45%  Similarity=0.580  Sum_probs=27.8

Q ss_pred             ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCc
Q 037371           14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIP   54 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p   54 (330)
                      ++|++|++++|+|+.+|..+++|++|++|++++|.+ ..++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i-~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI-SDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC-SBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC-CCCc
Confidence            367788888888877777777888888888887765 4444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=1.5e-06  Score=74.21  Aligned_cols=214  Identities=16%  Similarity=0.080  Sum_probs=133.6

Q ss_pred             cccceeccCCCCCCCCCc-hhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371           37 EKLRYLNLDHTRFLSIIP-PQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        37 ~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                      .-+..|.+.++.+...-. ..+-+..+.++.||+.+|.+ +.            ...+...+.+++.|++|+++.|....
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i-Sd------------WseI~~ile~lP~l~~LNls~N~L~s  111 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI-SD------------WSEIGAILEQLPALTTLNLSCNSLSS  111 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh-cc------------HHHHHHHHhcCccceEeeccCCcCCC
Confidence            334456666665433221 22234577899999999998 44            45666778899999999999987653


Q ss_pred             -HHHhhccccccCceEEEEEEeCCCCCCCcc-ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe
Q 037371          116 -VQKFLKYPKLVSITQSVWVECGTYTRPPFN-VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR  193 (330)
Q Consensus       116 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  193 (330)
                       +.++   .....+|++|.++-..  ..... ...+..+|.+++|+++.|.+.-+..+....     ..--+.+..|+..
T Consensus       112 ~I~~l---p~p~~nl~~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~-----e~~s~~v~tlh~~  181 (418)
T KOG2982|consen  112 DIKSL---PLPLKNLRVLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI-----EDWSTEVLTLHQL  181 (418)
T ss_pred             ccccC---cccccceEEEEEcCCC--CChhhhhhhhhcchhhhhhhhccchhhhhccccccc-----cccchhhhhhhcC
Confidence             2222   2234568888882222  12222 234678899999999866443332322211     0122457788888


Q ss_pred             cc---cccccCccc-ccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCC--CCCCC
Q 037371          194 SC---RGKDLTWLV-FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN--PLPFP  267 (330)
Q Consensus       194 ~~---~~~~l~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~  267 (330)
                      +|   .+....-++ -+|++..+.+-.+.++.....           .....||.+-.|.+... ++.+|...  ...||
T Consensus       182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-----------k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~  249 (418)
T KOG2982|consen  182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-----------KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFP  249 (418)
T ss_pred             CcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-----------ccCCCCCcchhhhhccc-ccccHHHHHHHcCCc
Confidence            88   333333333 389999999988877766431           15566777777777755 55554332  33499


Q ss_pred             CccEEEEccCCCCCCCCC
Q 037371          268 KLKKIQVFHCRQLKKLPL  285 (330)
Q Consensus       268 ~L~~L~i~~c~~L~~lp~  285 (330)
                      +|.-|.+.+-|-+..+-.
T Consensus       250 ~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  250 QLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hhheeeccCCcccccccC
Confidence            999999998776665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.02  E-value=2.6e-07  Score=85.92  Aligned_cols=174  Identities=21%  Similarity=0.226  Sum_probs=94.6

Q ss_pred             ccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCch
Q 037371           12 NLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAE   91 (330)
Q Consensus        12 ~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   91 (330)
                      .+..++.++++.+.+.++-..+..+.+|..|++.+|.+ ..+... +..+++|++|++++|.|                 
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~-l~~~~~L~~L~ls~N~I-----------------  130 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENL-LSSLVNLQVLDLSFNKI-----------------  130 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccc-hhhhhcchheecccccc-----------------
Confidence            45566666677776665444567777888888877766 333332 55678888888888777                 


Q ss_pred             hhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccc--cccccCccEEEEEccCcceee
Q 037371           92 PLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH--LAYMENLQELELGSSKLEEMK  169 (330)
Q Consensus        92 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~  169 (330)
                      .-...+..++.|+.|++.+|.+..+..+..    ...|+.++++...    ......  +..+.+++.+.+..|.+..+.
T Consensus       131 ~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~----i~~ie~~~~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  131 TKLEGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNR----IVDIENDELSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             ccccchhhccchhhheeccCcchhccCCcc----chhhhcccCCcch----hhhhhhhhhhhccchHHHhccCCchhccc
Confidence            233445566667788888777665444322    2334444441111    111111  355556666666655544332


Q ss_pred             eCcccccCccCCCCCCCccEEEEecccccccCcccccCC--ccEEEEeccccccc
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQN--LKQLNMQGFTMEEI  222 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~--L~~L~L~~~~l~~~  222 (330)
                      .-          ..+..+..+.+..+.+..+..+..+.+  |+.+.+.++.+..+
T Consensus       203 ~~----------~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  203 GL----------DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             ch----------HHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence            11          122233334555554444444444444  67777777665554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=4.4e-07  Score=85.95  Aligned_cols=99  Identities=23%  Similarity=0.324  Sum_probs=76.3

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.|..+.+++.=+++|+.|||+.|++.+. +.+..|++|++|||++|.+ ..+|.--...+. |+.|.+++|..      
T Consensus       174 N~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN~l------  244 (1096)
T KOG1859|consen  174 NRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNNAL------  244 (1096)
T ss_pred             hhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchh-ccccccchhhhh-heeeeecccHH------
Confidence            45566677888889999999999999877 4789999999999999966 666751123344 99999998777      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHh
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF  119 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  119 (330)
                                 ....++.++++|+.|+++.|-+....++
T Consensus       245 -----------~tL~gie~LksL~~LDlsyNll~~hseL  272 (1096)
T KOG1859|consen  245 -----------TTLRGIENLKSLYGLDLSYNLLSEHSEL  272 (1096)
T ss_pred             -----------HhhhhHHhhhhhhccchhHhhhhcchhh
Confidence                       5567788888888888888766554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.82  E-value=5.3e-06  Score=81.14  Aligned_cols=135  Identities=19%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             ccccEeecCCCCCc--ccChhhh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           14 VSLHHLDLSRTNIT--GLPQELK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        14 ~~L~~L~L~~~~~~--~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      .+|++|+++|...-  .=|..++ .+|.|+.|.+.+-.+..+--..+..++++|..||++++.+                
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI----------------  185 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI----------------  185 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc----------------
Confidence            46777777775321  2223333 3777777777664332221122355677777777777666                


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcc----ccccccccCccEEEEEccCcc
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN----VLHLAYMENLQELELGSSKLE  166 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~  166 (330)
                       ....+++++++|++|.+.+-.+....++..... ..+|+.||++..........    .+.-..+|+|+.||.+++.+.
T Consensus       186 -~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  186 -SNLSGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             -cCcHHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence             233667777777777666544444444444333 23366666622211011101    112234666777766654444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=3.3e-05  Score=47.16  Aligned_cols=39  Identities=26%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CCccEEEEecccccccCc-ccccCCccEEEEecccccccc
Q 037371          185 RSLNTVVLRSCRGKDLTW-LVFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       185 ~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~  223 (330)
                      ++|++|++++|.+++++. +++|++|+.|++++|.+.++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            367888888888878776 888888888888888877663

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.75  E-value=9.7e-06  Score=68.59  Aligned_cols=126  Identities=19%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             hhcCcccceeccCCCCCCCCCch---hhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh------HHHhccCcCc
Q 037371           33 LKALEKLRYLNLDHTRFLSIIPP---QLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL------MKELLGLKHL  103 (330)
Q Consensus        33 l~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~L  103 (330)
                      +-+|++|+..+++.|.+.-..|+   .+|++-+.|.||.+.+|+. ..   +.|    ...+..      .+...+-+.|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp---~aG----~rigkal~~la~nKKaa~kp~L  159 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GP---IAG----GRIGKALFHLAYNKKAADKPKL  159 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-Cc---cch----hHHHHHHHHHHHHhhhccCCCc
Confidence            44678888888888877555543   3467777888888888776 21   222    111111      1223344567


Q ss_pred             ceeeEEEechhhH--HHhhccccccCceEEEEEEeCCCCCCC---ccccccccccCccEEEEEccCcc
Q 037371          104 NVLSWSFRSSLAV--QKFLKYPKLVSITQSVWVECGTYTRPP---FNVLHLAYMENLQELELGSSKLE  166 (330)
Q Consensus       104 ~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~  166 (330)
                      ++..+..|+....  ..+...+.....|+.+.+..+++...+   .....+..+++|+.|+++.|.++
T Consensus       160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            7777777665431  222222333445666666443321111   11223445566677777655554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.72  E-value=1.4e-06  Score=82.62  Aligned_cols=87  Identities=18%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             ccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccc
Q 037371          148 HLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDK  227 (330)
Q Consensus       148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~  227 (330)
                      .+..+++|++|||+.|.+..+.-        .....+ .|+.|.|+||-++.+..+.++.+|+.|++++|-+.+-..-  
T Consensus       204 ~Lr~l~~LkhLDlsyN~L~~vp~--------l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL--  272 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNCLRHVPQ--------LSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSEL--  272 (1096)
T ss_pred             HHHhcccccccccccchhccccc--------cchhhh-hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhh--
Confidence            56778888888888777775521        111223 3888888888777777778888888888888665544210  


Q ss_pred             cccccccccCccccCcccceeeccccc
Q 037371          228 LSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                               ..+..+..|+.|+|.+++
T Consensus       273 ---------~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  273 ---------EPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ---------hHHHHHHHHHHHhhcCCc
Confidence                     134556677777777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=6.7e-06  Score=80.44  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             cCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCcc
Q 037371          101 KHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKL  179 (330)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  179 (330)
                      .+|++|++++.....-.-..+.....+.|++|.+ +...  ..........++|+|..|||++..++.+.          
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl~----------  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNLS----------  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCcH----------
Confidence            4677777776443321112233455667777777 4322  11222234567888888888876666541          


Q ss_pred             CCCCCCCccEEEEecccccc---cCcccccCCccEEEEecc-ccccc-ccccccccccccccCccccCcccceeeccccc
Q 037371          180 FRNGFRSLNTVVLRSCRGKD---LTWLVFVQNLKQLNMQGF-TMEEI-ISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       180 ~~~~~~~L~~L~L~~~~~~~---l~~l~~l~~L~~L~L~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                      +.+.+++|+.|.+.+-.+..   +..+-+|.+|+.||+|.. ..... .. ..+.       .....+|.|+.|+.++-.
T Consensus       190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-~qYl-------ec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII-EQYL-------ECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH-HHHH-------HhcccCccccEEecCCcc
Confidence            24677888888887773333   445667888888888872 11111 11 1111       144557888888777542


Q ss_pred             ccccccCC-CCCCCCccEEEEccCCC
Q 037371          255 NVKSVYPN-PLPFPKLKKIQVFHCRQ  279 (330)
Q Consensus       255 ~l~~l~~~-~~~~~~L~~L~i~~c~~  279 (330)
                      --+++... ...=|+|+.+.+.+|..
T Consensus       262 i~~~~le~ll~sH~~L~~i~~~~~~~  287 (699)
T KOG3665|consen  262 INEEILEELLNSHPNLQQIAALDCLA  287 (699)
T ss_pred             hhHHHHHHHHHhCccHhhhhhhhhhc
Confidence            21111111 11235555555555433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=7.3e-05  Score=60.64  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=72.4

Q ss_pred             ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecc---cccccCcccccCCccEEEEeccccccc
Q 037371          146 VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC---RGKDLTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       146 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~---~~~~l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      ...|.++++|..|.++.|+++.+.+...        .-+++|+.|.+.+|   .+.++..+..+|.|++|.+-+|.+++.
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L~--------~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDLD--------TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccchh--------hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence            4568889999999999999998876654        45788999999999   556677888999999999999887665


Q ss_pred             ccccccccccccccCccccCcccceeeccccc
Q 037371          223 ISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                      ..   + ..     -.+..+|+|+.|++.+..
T Consensus       129 ~~---Y-R~-----yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  129 KN---Y-RL-----YVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cC---c-ee-----EEEEecCcceEeehhhhh
Confidence            22   0 00     156778999999998753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.49  E-value=5.6e-05  Score=64.09  Aligned_cols=250  Identities=15%  Similarity=0.046  Sum_probs=141.3

Q ss_pred             hhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCC----CCchh------hhCCCCCCcEEEeccCC
Q 037371            9 GISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLS----IIPPQ------LISGFSKLEVLRLLSRG   73 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~----~~p~~------~~~~l~~L~~L~l~~~~   73 (330)
                      .+.-+..+..++|+||.|.     .+...+.+-.+|+..+++.- +.+    .++.+      ++-+++.|+..+++.|-
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3445778899999999887     34445666777888877654 222    22221      25689999999999988


Q ss_pred             CCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh---------HHHhhcc--ccccCceEEEEEEeCCCCCC
Q 037371           74 RWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA---------VQKFLKY--PKLVSITQSVWVECGTYTRP  142 (330)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------~~~~~~~--~~~~~~L~~L~l~~~~~~~~  142 (330)
                      +...   +        ...+..-+.+...|.+|.+++|..-.         +.++...  ....+.|+++..  ..+...
T Consensus       104 fg~~---~--------~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic--grNRle  170 (388)
T COG5238         104 FGSE---F--------PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC--GRNRLE  170 (388)
T ss_pred             cCcc---c--------chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe--ccchhc
Confidence            7211   1        23445667788899999999886422         1222111  122334555554  222122


Q ss_pred             Cccc----cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------CcccccCCccEE
Q 037371          143 PFNV----LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWLVFVQNLKQL  212 (330)
Q Consensus       143 ~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l~~l~~L~~L  212 (330)
                      ....    ..+....+|+.+.+..|.+..-.....   .......+.+|+.|+|.+|.++..      ..+...+.|+.|
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L---~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTML---AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHH---HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            2211    124445688888888766653211111   011123457899999998855442      134567788999


Q ss_pred             EEecccccccccccccccccccccCccccCcccceeeccccccc----ccccC---CCCCCCCccEEEEccCCCCCC
Q 037371          213 NMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNV----KSVYP---NPLPFPKLKKIQVFHCRQLKK  282 (330)
Q Consensus       213 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~l~~---~~~~~~~L~~L~i~~c~~L~~  282 (330)
                      .+.+|-+..-+..+.+-.+      .-..+|+|..|...+...-    ..+..   ...+.|-|..|.+.+ ++++.
T Consensus       248 ~lnDClls~~G~~~v~~~f------~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E  317 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRF------NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKE  317 (388)
T ss_pred             cccchhhccccHHHHHHHh------hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Ccchh
Confidence            9988777665443222111      2234677777777654221    11111   123366666666665 34443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.38  E-value=0.00073  Score=61.67  Aligned_cols=56  Identities=20%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccC
Q 037371           11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSR   72 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~   72 (330)
                      ..+.++.+|++++|.+..+|.   --.+|+.|.+++|.....+|.. +  ..+|+.|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence            345566666666666665552   1123666666665444444542 2  235666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.34  E-value=0.00041  Score=56.40  Aligned_cols=98  Identities=15%  Similarity=0.106  Sum_probs=55.8

Q ss_pred             cEeecCCCCCcccChhhhc-CcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           17 HHLDLSRTNITGLPQELKA-LEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        17 ~~L~L~~~~~~~lp~~l~~-l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      +.+++++.++..+.. ++. +.....+|+++|.+ ..++.  +..++.|.+|.+.+|.| +.              ..+.
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrI-t~--------------I~p~   82 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRI-TR--------------IDPD   82 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccch-hhccc--CCCccccceEEecCCcc-ee--------------eccc
Confidence            566676665543311 222 33456677877755 44444  77888888888888877 22              2222


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  134 (330)
                      --.-+++|..|.+.+|.+..+.++... ..++.|++|.+
T Consensus        83 L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltl  120 (233)
T KOG1644|consen   83 LDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTL  120 (233)
T ss_pred             hhhhccccceEEecCcchhhhhhcchh-ccCCccceeee
Confidence            223356677888888776655554322 22334555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=9.8e-05  Score=62.24  Aligned_cols=90  Identities=22%  Similarity=0.203  Sum_probs=54.6

Q ss_pred             hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCC--CCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371            8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHT--RFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus         8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~--~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      .-......|+.|++.++.++.+ ..+-.|++|++|.++.|  .....++.- ...+++|++|++++|++.          
T Consensus        37 gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~----------  104 (260)
T KOG2739|consen   37 GLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK----------  104 (260)
T ss_pred             cccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc----------
Confidence            3344555666777776665533 23456778888888887  444555442 445688888888888772          


Q ss_pred             ccCCchhhHHHhccCcCcceeeEEEech
Q 037371           86 LCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                          .-.....+..+++|..|.+.++..
T Consensus       105 ----~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  105 ----DLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             ----cccccchhhhhcchhhhhcccCCc
Confidence                113344455566666666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.14  E-value=5.2e-05  Score=71.70  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=17.7

Q ss_pred             cceeecccccccccccCCCCC--CCCccEEEEccCCCCCC
Q 037371          245 LEYLTMWRGTNVKSVYPNPLP--FPKLKKIQVFHCRQLKK  282 (330)
Q Consensus       245 L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~i~~c~~L~~  282 (330)
                      ++.|.+..|.....-......  +..++.+.+.+|+.+..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence            555666655444432222211  34455555555554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.07  E-value=0.00013  Score=55.64  Aligned_cols=87  Identities=23%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             ccccEeecCCCCCcccCh---hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           14 VSLHHLDLSRTNITGLPQ---ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~---~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      +.+..++|+.|.+..+++   .+++..+|+..++++|.+ ..+|+.+..+++.+..|++++|.+               .
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~nei---------------s   90 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEI---------------S   90 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhh---------------h
Confidence            467788999998776665   456667788889999977 788888566677899999999877               2


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHH
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQ  117 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~  117 (330)
                       ..|.++..++.||.|++..|.+....
T Consensus        91 -dvPeE~Aam~aLr~lNl~~N~l~~~p  116 (177)
T KOG4579|consen   91 -DVPEELAAMPALRSLNLRFNPLNAEP  116 (177)
T ss_pred             -hchHHHhhhHHhhhcccccCccccch
Confidence             57788999999999999988765433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.02  E-value=9.5e-05  Score=56.36  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=72.3

Q ss_pred             hhhccccccEeecCCCCCcccChhh-hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      .+.+..+|...+|++|.+.++|+.+ .+.+-++.|++.+|++ .++|.+ +..|+.|+.|+++.|.+ +           
T Consensus        48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE-~Aam~aLr~lNl~~N~l-~-----------  113 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEE-LAAMPALRSLNLRFNPL-N-----------  113 (177)
T ss_pred             HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHH-HhhhHHhhhcccccCcc-c-----------
Confidence            3566678888899999999998877 4567899999999977 788988 88999999999999988 3           


Q ss_pred             CCchhhHHHhccCcCcceeeEEEechhhHH
Q 037371           88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQ  117 (330)
Q Consensus        88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  117 (330)
                          ..++.+..+.++-.|+..+|....++
T Consensus       114 ----~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  114 ----AEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ----cchHHHHHHHhHHHhcCCCCccccCc
Confidence                34555666888888888887765543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=5.6e-05  Score=64.30  Aligned_cols=82  Identities=16%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             cccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchh
Q 037371           13 LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEP   92 (330)
Q Consensus        13 l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   92 (330)
                      +.+.+.|+..||++..+ +-..+|+.|++|.|+-|++. .+..  +.++++|++|++..|.|.              .-.
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~--------------sld   79 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIE--------------SLD   79 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccc--------------cHH
Confidence            34555666666666654 23456666666666666553 3332  556666666666666651              113


Q ss_pred             hHHHhccCcCcceeeEEEec
Q 037371           93 LMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        93 ~~~~l~~l~~L~~L~l~~~~  112 (330)
                      -..-+.++++||.|.+..|.
T Consensus        80 EL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   80 ELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHHHhcCchhhhHhhccCC
Confidence            34445566666666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=7.1e-05  Score=63.70  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=77.0

Q ss_pred             hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           34 KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        34 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                      +.+.+.+.|+.-||.+ .++.-  ..+|+.|++|.++.|+|                 .....+.++++|++|++..|.+
T Consensus        16 sdl~~vkKLNcwg~~L-~DIsi--c~kMp~lEVLsLSvNkI-----------------ssL~pl~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGL-DDISI--CEKMPLLEVLSLSVNKI-----------------SSLAPLQRCTRLKELYLRKNCI   75 (388)
T ss_pred             hHHHHhhhhcccCCCc-cHHHH--HHhcccceeEEeecccc-----------------ccchhHHHHHHHHHHHHHhccc
Confidence            3467788899988866 45443  67899999999999998                 4566788999999999999999


Q ss_pred             hhHHHhhccccccCceEEEEE---EeCCCCCCCc--cccccccccCccEEE
Q 037371          114 LAVQKFLKYPKLVSITQSVWV---ECGTYTRPPF--NVLHLAYMENLQELE  159 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l---~~~~~~~~~~--~~~~l~~l~~L~~L~  159 (330)
                      ..+.++.-+ ...++|+.|++   -|.+  ..+.  -...+.-+|+|+.||
T Consensus        76 ~sldEL~YL-knlpsLr~LWL~ENPCc~--~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   76 ESLDELEYL-KNLPSLRTLWLDENPCCG--EAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccHHHHHHH-hcCchhhhHhhccCCccc--ccchhHHHHHHHHcccchhcc
Confidence            888876544 33566899998   2433  2222  234577788888886

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.63  E-value=0.0068  Score=55.50  Aligned_cols=14  Identities=7%  Similarity=-0.209  Sum_probs=8.5

Q ss_pred             CCCCcEEEeccCCC
Q 037371           61 FSKLEVLRLLSRGR   74 (330)
Q Consensus        61 l~~L~~L~l~~~~~   74 (330)
                      +.+++.|++++|.+
T Consensus        51 ~~~l~~L~Is~c~L   64 (426)
T PRK15386         51 ARASGRLYIKDCDI   64 (426)
T ss_pred             hcCCCEEEeCCCCC
Confidence            55666666666544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.53  E-value=0.00051  Score=64.97  Aligned_cols=174  Identities=25%  Similarity=0.217  Sum_probs=101.5

Q ss_pred             ccccccEeecCCC-CCcc--cChhhhcCcccceeccCCC-CCCCCCc---hhhhCCCCCCcEEEeccCCCCCccccccCc
Q 037371           12 NLVSLHHLDLSRT-NITG--LPQELKALEKLRYLNLDHT-RFLSIIP---PQLISGFSKLEVLRLLSRGRWSVLEEEEGS   84 (330)
Q Consensus        12 ~l~~L~~L~L~~~-~~~~--lp~~l~~l~~L~~L~l~~~-~~~~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   84 (330)
                      .++.|+.+.+.++ .+..  +-.....+++|+.|+++++ ......+   ......+.+|+.|+++.+...         
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i---------  256 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV---------  256 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence            4678888888887 3443  3345678899999999873 2222222   223456788999999988831         


Q ss_pred             cccCCchhhHHHhc-cCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEE
Q 037371           85 VLCDDAEPLMKELL-GLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELG  161 (330)
Q Consensus        85 ~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~  161 (330)
                           .......+. .+++|++|.+.++....-..+......++.|++|++ .|..  ...... ....++++++.|.+.
T Consensus       257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~--~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG--LTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc--chHHHHHHHHHhCcchhhhhhh
Confidence                 224444444 378899888666553223344444456777999999 7766  222222 224456666665443


Q ss_pred             ccCcceeeeCcccccCccCCCCCCCccEEEEecc-ccc--ccC--cccccCCccEEEEecccc
Q 037371          162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGK--DLT--WLVFVQNLKQLNMQGFTM  219 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~--~l~--~l~~l~~L~~L~L~~~~l  219 (330)
                      .                  ...++.++.+.+.++ ...  .+.  ....+++++.+.+.....
T Consensus       330 ~------------------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  330 S------------------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             h------------------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence            1                  012445566666555 322  111  345677777777776333

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.00041  Score=58.52  Aligned_cols=117  Identities=16%  Similarity=0.112  Sum_probs=66.3

Q ss_pred             ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceee
Q 037371           28 GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLS  107 (330)
Q Consensus        28 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  107 (330)
                      ++..-.-.+..|+.|++.++..+ .+-.  +-.|++|+.|.++.|+.. .            ...+......+++|++|+
T Consensus        34 ~~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~-~------------~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRR-V------------SGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             Ccccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCccc-c------------cccceehhhhCCceeEEe
Confidence            34444456677777777776442 2222  667889999999998431 1            334444555669999999


Q ss_pred             EEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE
Q 037371          108 WSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG  161 (330)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (330)
                      +++|.+..+..+... ....+|.+|++ +|..-+....-...+.-+++|++|+-.
T Consensus        98 ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen   98 LSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             ecCCccccccccchh-hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            998876543333222 12333566666 554421222222334555666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.24  E-value=0.0015  Score=33.21  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=12.7

Q ss_pred             cccEeecCCCCCcccChhhhc
Q 037371           15 SLHHLDLSRTNITGLPQELKA   35 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~   35 (330)
                      +|++|++++|.++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.0017  Score=52.83  Aligned_cols=65  Identities=23%  Similarity=0.386  Sum_probs=43.6

Q ss_pred             cccccccccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecc-cccc--cCcccccCCccEEEEec
Q 037371          145 NVLHLAYMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKD--LTWLVFVQNLKQLNMQG  216 (330)
Q Consensus       145 ~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--l~~l~~l~~L~~L~L~~  216 (330)
                      ....+..++.++.|.+. |.++.+...+..       -+..++|+.|+|++| .+++  +.++..+++|+.|.|.+
T Consensus       117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l-------~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  117 GLEHLRDLRSIKSLSLANCKYFDDWCLERL-------GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHHhccchhhhheeccccchhhHHHHHh-------cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            34456666777777777 777766554433       124577888888888 6666  45677777888777776

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.75  E-value=0.018  Score=27.15  Aligned_cols=16  Identities=50%  Similarity=0.802  Sum_probs=7.2

Q ss_pred             cccEeecCCCCCcccC
Q 037371           15 SLHHLDLSRTNITGLP   30 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp   30 (330)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=0.0079  Score=49.08  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=43.7

Q ss_pred             CCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCC
Q 037371           62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYT  140 (330)
Q Consensus        62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~  140 (330)
                      ..++.+|.+++.+               .......+.+++.|+.|.+.++....-..+.......++|+.|++ .|..  
T Consensus       101 ~~IeaVDAsds~I---------------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r--  163 (221)
T KOG3864|consen  101 VKIEAVDASDSSI---------------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR--  163 (221)
T ss_pred             ceEEEEecCCchH---------------HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe--
Confidence            3578888888777               556677777777777777765543222222222223444555555 4444  


Q ss_pred             CCCccccccccccCccEEEE
Q 037371          141 RPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus       141 ~~~~~~~~l~~l~~L~~L~l  160 (330)
                      ++......+..+++|+.|.+
T Consensus       164 IT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  164 ITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             echhHHHHHHHhhhhHHHHh
Confidence            33333444444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.24  E-value=0.61  Score=35.18  Aligned_cols=13  Identities=8%  Similarity=0.268  Sum_probs=5.0

Q ss_pred             ccccCCccEEEEe
Q 037371          203 LVFVQNLKQLNMQ  215 (330)
Q Consensus       203 l~~l~~L~~L~L~  215 (330)
                      +.++++|+.+.+.
T Consensus        54 F~~~~~l~~i~~~   66 (129)
T PF13306_consen   54 FSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT-EEEEET
T ss_pred             eeccccccccccc
Confidence            3444445555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.29  E-value=0.2  Score=37.91  Aligned_cols=86  Identities=13%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             cCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371            5 KLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus         5 ~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      +++. .|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+  ...++..++.++.+|+.+.+.. ..        
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~--------   69 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NL--------   69 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT--------
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cc--------
Confidence            4554 478888999999885 4666766 4677778999998775  3666666688888899999865 22        


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEE
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWS  109 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~  109 (330)
                             .......+..+++|+.+.+.
T Consensus        70 -------~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   70 -------KSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             --------EE-TTTTTT-TTECEEEET
T ss_pred             -------cccccccccccccccccccC
Confidence                   11122345567777766664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.87  E-value=0.16  Score=26.71  Aligned_cols=19  Identities=37%  Similarity=0.628  Sum_probs=11.8

Q ss_pred             ccccEeecCCCCCcccChh
Q 037371           14 VSLHHLDLSRTNITGLPQE   32 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~~   32 (330)
                      .+|++|+|++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.87  E-value=0.16  Score=26.71  Aligned_cols=19  Identities=37%  Similarity=0.628  Sum_probs=11.8

Q ss_pred             ccccEeecCCCCCcccChh
Q 037371           14 VSLHHLDLSRTNITGLPQE   32 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~~   32 (330)
                      .+|++|+|++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.03  E-value=0.51  Score=24.78  Aligned_cols=17  Identities=18%  Similarity=0.632  Sum_probs=11.7

Q ss_pred             CCCccEEEEccCCCCCC
Q 037371          266 FPKLKKIQVFHCRQLKK  282 (330)
Q Consensus       266 ~~~L~~L~i~~c~~L~~  282 (330)
                      +++|+.|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46777777777776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.19  E-value=0.032  Score=46.73  Aligned_cols=93  Identities=17%  Similarity=0.176  Sum_probs=74.1

Q ss_pred             CccCCh-hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            3 LSKLPS-GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         3 l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      ++++|- .+........||++.+.+..+-..++.+..|..|+++.|.+ ..+|.+ +.....+++++...|..       
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~-~~~~~d-~~q~~e~~~~~~~~n~~-------  100 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI-KFLPKD-AKQQRETVNAASHKNNH-------  100 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH-hhChhh-HHHHHHHHHHHhhccch-------
Confidence            456663 47777888999999998877777888899999999998865 677887 88888888888877544       


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                               ...|.+....++++.++..++.+
T Consensus       101 ---------~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  101 ---------SQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ---------hhCCccccccCCcchhhhccCcc
Confidence                     36788888999999988887764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.18  E-value=0.66  Score=23.72  Aligned_cols=13  Identities=31%  Similarity=0.314  Sum_probs=7.5

Q ss_pred             CCCcEEEeccCCC
Q 037371           62 SKLEVLRLLSRGR   74 (330)
Q Consensus        62 ~~L~~L~l~~~~~   74 (330)
                      ++|++|++++|++
T Consensus         2 ~~L~~L~l~~n~i   14 (24)
T PF13516_consen    2 PNLETLDLSNNQI   14 (24)
T ss_dssp             TT-SEEE-TSSBE
T ss_pred             CCCCEEEccCCcC
Confidence            5667777777666

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 13/64 (20%), Positives = 23/64 (35%)

Query: 6   LPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
                    SL +LDLS   +  +      LE+L +L+  H+    +    +      L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 66  VLRL 69
            L +
Sbjct: 425 YLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  L  G  S L SL  L    TN+  L    +  L+ L+ LN+ H    S   P+  S
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 60  GFSKLEVLRL 69
             + LE L L
Sbjct: 147 NLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
          L+  K+P  +    S  +LDLS   +  L      +  +L+ L+L      +I       
Sbjct: 17 LNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQ 73

Query: 60 GFSKLEVLRL 69
            S L  L L
Sbjct: 74 SLSHLSTLIL 83

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 7   PSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
            S   +L +L +LD+S T+           L  L  L +    F     P + +    L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 66  VLRL 69
            L L
Sbjct: 474 FLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
              + LP   + L +L  LDLS+  +  L P    +L  L+ LN+ H      +      
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYK 515

Query: 60  GFSKLEVLRL 69
             + L+VL  
Sbjct: 516 CLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 7   PSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
                +   L  LDLSR  I  +     ++L  L  L L     +  +     SG S L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 103

Query: 66  VLRL 69
            L  
Sbjct: 104 KLVA 107

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  +  G   +L  L  L L+   I  L       L  L+ L    T  L+ +    I 
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIG 121

Query: 60  GFSKLEVLRL 69
               L+ L +
Sbjct: 122 HLKTLKELNV 131

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 7   PSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
           P+  ++L SL  L++S  N   L     K L  L+ L+      ++    +L    S L 
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 66  VLRL 69
            L L
Sbjct: 547 FLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 50/245 (20%), Positives = 77/245 (31%), Gaps = 53/245 (21%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALE---------------------- 37
           +   KLP   SNL +L HLDLS   I  +   +L+ L                       
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 38  -----KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL-LSRGRWSVLEEEEGSVLCDDAE 91
                +L  L L +      +    I G + LEV RL L   R     E+      +   
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 92  PLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 151
            L  E   L +L+               +    LVS+T                V   +Y
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-------------RVKDFSY 302

Query: 152 MENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQ 211
               Q LEL + K  +                 +SL  +   S +G +    V + +L+ 
Sbjct: 303 NFGWQHLELVNCKFGQ-----------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 212 LNMQG 216
           L++  
Sbjct: 352 LDLSR 356

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 49/256 (19%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
               + S        L  LDL+ T+++ LP  L  L  L+ L L   +    +     S 
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASN 323

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKEL-LG---LKHLNVLSWSFRSSLAV 116
           F  L  L +    +   L       L       ++EL L    ++  +  +   R+   +
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENL-----ENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 117 QK-FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175
           Q   L Y + +S+    + EC                  L+ L+L  ++L+     S   
Sbjct: 379 QSLNLSYNEPLSLKTEAFKEC----------------PQLELLDLAFTRLKVKDAQS--- 419

Query: 176 VKKLFRNGFRSLNTVVLRSCRGKDLTWLVF--VQNLKQLNMQGFTMEEIISVDKLSDISE 233
               F+N    L  + L        +  +F  +  L+ LN+QG            +   +
Sbjct: 420 ---PFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG------------NHFPK 463

Query: 234 IIGSEHNIFARLEYLT 249
               + N    L  L 
Sbjct: 464 GNIQKTNSLQTLGRLE 479

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
          L L+++P  + N  S   L+ S   +  +       L  L +L+L   + +  I      
Sbjct: 22 LGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQ 78

Query: 60 GFSKLEVLRL 69
             +L+ L L
Sbjct: 79 SQHRLDTLVL 88

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
            L  +     S   +L HL   +T I+ +    L   + L  L L     +S I      
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGF 150

Query: 60  GFSKLEVLRL 69
              KL+VL  
Sbjct: 151 PTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3   LSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  + +   S L++L  LDL+R  I  + ++  ++  +L  L L     L  +    +SG
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSG 103

Query: 61  FSKLEVLRL 69
              L+ L  
Sbjct: 104 PKALKHLFF 112

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLP---QELKALEKLRYLNLDHTRFLSIIPPQL 57
             L      + NL +L  LDLS  +I        +L+ L  L+ LNL +      +  + 
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEA 395

Query: 58  ISGFSKLEVLRL 69
                +LE+L L
Sbjct: 396 FKECPQLELLDL 407

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           LS +     ++L  ++H+DLS   +T    E  +  K  YLNL     +SII P L+   
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH-ISIILPSLLPIL 546

Query: 62  SKLEVLRL 69
           S+   + L
Sbjct: 547 SQQRTINL 554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L    + + +  +  L  L+     + G      +  KL  LNL + + ++ IP      
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGF 375

Query: 61  FSKLEVLRL 69
             ++E L  
Sbjct: 376 TEQVENLSF 384

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQ---------ELKALEKLRYLNLDHTRFLSII 53
           L+KLP+ +  L  +  ++++        Q         +    EK++ + + +    +  
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 54  PPQLISGFSKLEVLRL 69
               +    KL +L  
Sbjct: 322 VETSLQKMKKLGMLEC 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L + P GI+   SL  L +   +I  + +++     +  L++     +SI    +   + 
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCP-YI 611

Query: 63  KLEVLRLL 70
           +  +  L 
Sbjct: 612 EAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 2   SLSKLPSGI--SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLS------II 53
            L+KL      + L  L  +DLS  + +  P +      L+   + + R           
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 54  PPQLISGFSKLEVLRL 69
           P   I+    L  L++
Sbjct: 559 PEG-ITLCPSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 11/78 (14%)

Query: 2   SLSKLPS--GISNLVSLHHLDLSRTNITG--------LPQELKALEKLRYLNLDHTRFLS 51
            L  +P+     ++  +  +D S   I          L         +  +NL + + +S
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-IS 446

Query: 52  IIPPQLISGFSKLEVLRL 69
             P +L S  S L  + L
Sbjct: 447 KFPKELFSTGSPLSSINL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
               +       +    +     NIT + + +  L KLR   + ++ F++    +     
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE-N 229

Query: 62  SKLEVLRLLS 71
              E  +   
Sbjct: 230 ENSEYAQQYK 239

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKA--LEKLRYLNLDHTRFLSIIPPQLIS 59
           SL        N   L  +DL    +T L  + +A  L  L  ++L +    S  P Q   
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ-PL 533

Query: 60  GFSKLEVLRLLS 71
             S L+   + +
Sbjct: 534 NSSTLKGFGIRN 545

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIP------ 54
           +   L       +++  ++LS   I+  P+E       L  +NL       I        
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 55  PQLISGFSKLEVLRL 69
            +       L  + L
Sbjct: 481 NENFKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 9/77 (11%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLP--------QELKALEKLRYLNLDHTRFLSI 52
            +SK P  + S    L  ++L    +T +P        +  K    L  ++L   +   +
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 53  IPPQLISGFSKLEVLRL 69
                 +    L  + L
Sbjct: 504 SDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 6/88 (6%), Positives = 27/88 (30%), Gaps = 21/88 (23%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITG--------------------LPQELKALEKLRY 41
           +++ +   +  L  L    +  +                           +   L+ L  
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 42  LNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           + + +   L+ +P   +    +++++ +
Sbjct: 254 VEVYNCPNLTKLPTF-LKALPEMQLINV 280

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 10  ISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLR 68
           +++   +  L L     +G +P  +  L +L  L L               G S      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 69  LLSRGR 74
              + R
Sbjct: 137 QKQKMR 142

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 12/83 (14%)

Query: 1   LSLS------KLPSGISNLVSLHHLDLSRTNITG-----LPQELKALEKLRYLNLDHTRF 49
           LSL       ++P  I  L  L  L L             P+ + A             +
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 50  LSIIPPQLISG-FSKLEVLRLLS 71
                       FS L    + S
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINS 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIP------- 54
            L +LP  +     L  L L+R  +  LP  + +L +LR L++     L+ +P       
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 55  -PQLISGFSKLEVLRL 69
                 G   L+ LRL
Sbjct: 175 ASGEHQGLVNLQSLRL 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            +  LP+ I+NL +L  L +  + ++ L   +  L KL  L+L     L   PP    G 
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGR 252

Query: 62  SKLEVLRL 69
           + L+ L L
Sbjct: 253 APLKRLIL 260

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            L + P     L  L H+ +    +  LP  ++    L  L L     L  +P   I+  
Sbjct: 92  PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASL 149

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNV 105
           ++L  L + +    + L E   S    DA    + L+ L+ L +
Sbjct: 150 NRLRELSIRACPELTELPEPLAST---DASGEHQGLVNLQSLRL 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTN-ITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +L   P        L  L L   + +  LP ++  L +L  L+L     LS +P   I+ 
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQ 299

Query: 61  FSKLEVLRL 69
                ++ +
Sbjct: 300 LPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 5   KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
                   LV+L  L L  T I  LP  +  L+ L+ L + ++  LS + P  I    KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKL 231

Query: 65  EVLRL 69
           E L L
Sbjct: 232 EELDL 236

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 2   SLSKLPSGISNLVS--LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           +L      + +        L+L    +   P +   L  L+++ +D    + +  P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL--PDTMQ 124

Query: 60  GFSKLEVLRL 69
            F+ LE L L
Sbjct: 125 QFAGLETLTL 134

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 2   SLSKLPSGISNLVSLHHLDLSR-TNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           +L  LP  I  L  L  LDL    N++ LP  +  L     + +       +   + ++
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 3   LSKLPSGI--SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSI-----IPP 55
           L+ L      + L  L ++D+S    +  P +     +L+   + H R           P
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 56  QLISGFSKLEVLRL 69
             I+    L  L++
Sbjct: 800 TGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKA--LEKLRYLNLDHTRFLSIIPPQLIS 59
           SL        N   L  +DL    +T L  + +A  L  L  +++ +  F S   P    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF--PTQPL 773

Query: 60  GFSKLEVLRLLS 71
             S+L+   +  
Sbjct: 774 NSSQLKAFGIRH 785

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L + P+GI+   SL  L +   +I  + ++L    +L  L++     +SI    +     
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852

Query: 63  KLEVLRLLSR 72
               + L  +
Sbjct: 853 AGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 21/87 (24%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKA--------------------LEKLRYL 42
           ++ +   I  L  L  +  + +  T     +                      L+ L  +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 43  NLDHTRFLSIIPPQLISGFSKLEVLRL 69
            L +   ++ +P   +    +L+ L +
Sbjct: 497 ELYNCPNMTQLPDF-LYDLPELQSLNI 522

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE--------LKALEKLRYLNLDHTRFLSII 53
           + K P+ + +    +  + LS   +T +P+          K    L  ++L   +  S+ 
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 54  PPQLISGFSKLEVLRL 69
                +    L  + +
Sbjct: 745 DDFRATTLPYLSNMDV 760

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 13/80 (16%)

Query: 3   LSKLPSGIS------NLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSI--- 52
           +      IS        ++   + LS   I   P E       +  + L +    SI   
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 53  ---IPPQLISGFSKLEVLRL 69
                         L  + L
Sbjct: 716 SLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 37/300 (12%), Positives = 80/300 (26%), Gaps = 54/300 (18%)

Query: 10  ISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLR 68
           + N   +  L L+     G +P  +  L +L+ L+                  +      
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 69  LLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSI 128
              R R    +                 L   + LN+        L      + P++  I
Sbjct: 379 RKHRIRMHYKKM---------------FLDYDQRLNLS------DLLQDAINRNPEMKPI 417

Query: 129 TQSVWVEC-GTYTRPPFNVLH-----LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRN 182
            +   +    T      N +      +  +  LQ +   +S      I    E       
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

Query: 183 GFRSLNTVVLRSCRGKDLTWLVFV---------------QNLKQLNMQGFTMEEIISVD- 226
                  +   +   KDLT +                    L+ LN+          +  
Sbjct: 478 KQYENEELSWSNL--KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 227 KLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR--QLKKLP 284
             + +++   +       ++   M    N++   P      K+ K+ +  C   +++ L 
Sbjct: 536 DWTRLADDEDTGPK----IQIFYM-GYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHLE 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 23/177 (12%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALE-KLRYLNLDHTRFLSIIPPQLISGF 61
             ++P  I  L  L  L     + T   +     E           R         +   
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 62  SKLEVLRL-------------LSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSW 108
            +L +  L             + +     L++ +   L +    + K +  L  L ++  
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII-- 453

Query: 109 SFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKL 165
                 A   F      V    +       Y       L  + +++L ++EL +   
Sbjct: 454 ----YFANSPFTYDNIAVDWEDANSDYAKQYENEE---LSWSNLKDLTDVELYNCPN 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 44/311 (14%), Positives = 93/311 (29%), Gaps = 36/311 (11%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  L  G  S L SL  L    TN+  L    +  L+ L+ LN+ H    S   P+  S
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK----------------ELLGLKHL 103
             + LE L  LS  +   +   +  VL       +                 + + L  L
Sbjct: 147 NLTNLEHLD-LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 104 NVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTR-PPFNVLHLAYMENLQELELGS 162
            + +     ++          L    +   +  G +           + +E L  L +  
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGL----EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI 222
            +L  +     +++  LF N   ++++  L S   + +    +    + L +      + 
Sbjct: 262 FRLAYLDY-YLDDIIDLF-NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 223 --ISVDKLS--DISEIIGSEHNIFA---RLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVF 275
             + +  L     +   G           LE+L +     +               ++  
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 276 HCR--QLKKLP 284
                 +  + 
Sbjct: 379 DLSFNGVITMS 389

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 3   LSKLPSGI--SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L ++       +L +L +LD+S T+           L  L  L +    F     P + +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 60  GFSKLEVLRL 69
               L  L L
Sbjct: 468 ELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 1   LSLSKLPSG-ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           LS     S       SL +LDLS   +  +      LE+L +L+  H+    +    +  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 60  GFSKLEVLRL 69
               L  L +
Sbjct: 419 SLRNLIYLDI 428

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
          L+  K+P  +    S  +LDLS   +  L      +  +L+ L+L     +  I      
Sbjct: 17 LNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQ 73

Query: 60 GFSKLEVLRL 69
            S L  L L
Sbjct: 74 SLSHLSTLIL 83

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  L S    +   L  LDLSR  I  +     ++L  L  L L     +  +     SG
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98

Query: 61  FSKLEVLRL 69
            S L+ L  
Sbjct: 99  LSSLQKLVA 107

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  +  G   +L  L  L L+   I  L       L  L+ L    T  L+ +    I 
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIG 121

Query: 60  GFSKLEVLRL 69
               L+ L +
Sbjct: 122 HLKTLKELNV 131

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
              + LP   + L +L  LDLS+  +  L      +L  L+ LN+   + L  +P  +  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFD 515

Query: 60  GFSKLEVLRL 69
             + L+ + L
Sbjct: 516 RLTSLQKIWL 525

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 46/294 (15%), Positives = 91/294 (30%), Gaps = 57/294 (19%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++ +      +L SL HLDLS  +++ L       L  L+YLNL    + ++    L   
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
            + L+ LR+ +   +S +                 +  GL  LN L             +
Sbjct: 122 LTNLQTLRIGNVETFSEIRRI--------------DFAGLTSLNELE------------I 155

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLF 180
           K   L +                   +      ++  L L  S+           + ++F
Sbjct: 156 KALSLRNYQSQS-----------LKSIR-----DIHHLTLHLSES--------AFLLEIF 191

Query: 181 RNGFRSLNTVVLRSCRGKDLTWLVFV-----QNLKQLNMQGFTMEEIISVDKLSDISEII 235
            +   S+  + LR        +           +K+L  +G  + +    + L  +  I+
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 236 GSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSS 289
                 F       +      +S   + L   +   I+  H  Q       S+ 
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           S+ K    +  L +L  LD+SR     +P   +  EK+R+LNL  T  + ++   +    
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI---P 430

Query: 62  SKLEVLRL 69
             LEVL +
Sbjct: 431 QTLEVLDV 438

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRF--LSIIPPQL 57
            L    S + S L  +  + +  + +  +P    + L+ L +L+L         +     
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 58  ISGFSKLEVLRL 69
              +  L+ L L
Sbjct: 357 KGAWPSLQTLVL 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +S + L S    L  L  L +SR  +  LP        L  + +   + L  +P  +   
Sbjct: 438 VSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQ-LKSVPDGIFDR 495

Query: 61  FSKLEVLRL 69
            + L+ + L
Sbjct: 496 LTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 44/224 (19%)

Query: 12  NLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLL 70
             V++  L + +  +          LEK++ + +++++ + ++P         LE L L 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDL- 341

Query: 71  SRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS----SLAVQKFLKYPKLV 126
                        +++ ++             L  L  S           +  L    L 
Sbjct: 342 -----------SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 127 SITQSVWVECGTYTRPPFNVLH-----LAYMENLQELELGSSKLEEMKIDSTEEVKKL-- 179
           S+  S             N  H       + E ++ L L S+ +  +K    + ++ L  
Sbjct: 391 SLDIS------------RNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV 438

Query: 180 -------FRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 216
                  F      L  + +   + K L        L  + +  
Sbjct: 439 SNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISR 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQL-ISG 60
             S + S + +L  L  L LS ++I G     K    L  L+L        +     +  
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124

Query: 61  FSKLEVLRL 69
            S L+ L +
Sbjct: 125 CSGLKFLNV 133

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 5   KLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSK 63
           ++PSG+SN  +L+ + LS   +TG +P+ +  LE L  L L +  F   IP + +     
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRS 539

Query: 64  LEVLRL 69
           L  L L
Sbjct: 540 LIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 1   LSLS------KLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSII 53
           L +S           IS    L  L++S     G +P     L+ L+YL+L   +F   I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285

Query: 54  PPQLISGFSKLEVLRL 69
           P  L      L  L L
Sbjct: 286 PDFLSGACDTLTGLDL 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 1   LSLS------KLPSGIS-NLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSI 52
           LSL+      ++P  +S    +L  LDLS  +  G +P    +   L  L L    F   
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 53  IPPQLISGFSKLEVLRL 69
           +P   +     L+VL L
Sbjct: 334 LPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 1   LSLS------KLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSII 53
           L L       K+P  +SN   L  L LS   ++G +P  L +L KLR L L        I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 54  PPQLISGFSKLEVLRL 69
           P + +     LE L L
Sbjct: 459 PQE-LMYVKTLETLIL 473

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 5   KLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSK 63
           ++P  +  + +L  L L   ++TG +P  L     L +++L + R    IP   I     
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLEN 515

Query: 64  LEVLRL 69
           L +L+L
Sbjct: 516 LAILKL 521

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGL---PQELKALEKLRYLNLDHTRFLSIIPPQLI 58
            ++   SG     SL  LDLSR +++G       L +   L++LN+              
Sbjct: 88  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147

Query: 59  SGFSKLEVLRL 69
              + LEVL L
Sbjct: 148 LKLNSLEVLDL 158

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 5   KLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSK 63
                  N  S+  LD+S   ++G +P+E+ ++  L  LNL H      IP + +     
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRG 681

Query: 64  LEVL 67
           L +L
Sbjct: 682 LNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           +S  V+L  LD+S  N +     L     L++L++   +         IS  ++L++L +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITG-LPQELKA---LEKLRYLNLDHTRFLSIIPPQ 56
           L      SG   L SL  LDLS  +I+G             +L++L +   +    +   
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-- 195

Query: 57  LISGFSKLEVLRL 69
            +S    LE L +
Sbjct: 196 -VSRCVNLEFLDV 207

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 7   PSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
           P  I ++  L  L+L   +I+G +P E+  L  L  L+L   +    IP  + S  + L 
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLT 707

Query: 66  VLRL 69
            + L
Sbjct: 708 EIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
               ++ L + +  +++     G           + +L++ +      IP + I     L
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYL 658

Query: 65  EVLRL 69
            +L L
Sbjct: 659 FILNL 663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 7   PSGISNLVSLHHLDLSRTNITG-LPQELKAL-EKLRYLNLDHTRFLSIIPPQLISG-FSK 63
              +  +  L  LDLS    +G LP+ L  L   L  L+L    F   I P L     + 
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 64  LEVLRL 69
           L+ L L
Sbjct: 396 LQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 5   KLPSGISN--LVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            +   +      +L  L L     TG +P  L    +L  L+L        IP  L    
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSL 441

Query: 62  SKLEVLRL 69
           SKL  L+L
Sbjct: 442 SKLRDLKL 449

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 7   PSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIP 54
           P  + +L  L+ LDLS   + G +PQ + AL  L  ++L +      IP
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
           +P  I+ L  LH+L ++ TN++G +P  L  ++ L  L+  +      +PP  IS    L
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNL 151

Query: 65  EVLRL 69
             +  
Sbjct: 152 VGITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 5   KLPSGISNLVSLHHLDLSRTN-ITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
            +PS ++NL  L+ L +   N + G +P  +  L +L YL + HT     IP   +S   
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIK 125

Query: 63  KLEVLRL 69
            L  L  
Sbjct: 126 TLVTLDF 132

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 1   LSLS------KLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSII 53
           +++S      K+P   +NL +L  +DLSR  + G       + +  + ++L        +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 54  PPQLISGFSKLEVLRL 69
               +     L  L L
Sbjct: 238 GK--VGLSKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG-LPQELKALEKL-RYLNLDHTRFLSIIPPQLISGFSK 63
           LP  IS+L +L  +      I+G +P    +  KL   + +   R    IPP        
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN 198

Query: 64  LEVLRL 69
           L  + L
Sbjct: 199 LAFVDL 204

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
                 +  +   + L++ ++   L  ++   + L  L+L + R    +P  L +    L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFL 270

Query: 65  EVLRL 69
             L +
Sbjct: 271 HSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 6   LPSGISNLVSLHHLDLSRTNITG---LPQELKALEKLRYLNLDHTRFLS-IIPPQLISGF 61
           L    +    +++LDLS  N+     +P  L  L  L +L +     L   IPP  I+  
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKL 100

Query: 62  SKLEVLRL 69
           ++L  L +
Sbjct: 101 TQLHYLYI 108

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 25/233 (10%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +     G  S L SL +L    T +  L    +  L  L+ LN+ H    S   P   S
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK----------------ELLGLKHL 103
             + L  +  LS      +   +   L ++ +  +                 + + L  L
Sbjct: 151 NLTNLVHVD-LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209

Query: 104 NVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSS 163
             L  +F SS  ++  L+   L  +     +           +   + ME L ++ +   
Sbjct: 210 T-LRGNFNSSNIMKTCLQ--NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI--D 264

Query: 164 KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 216
           +      +   +    F     +++ + L     K L  +      + L++  
Sbjct: 265 EFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
            S   +L  L +LD+S TN           L  L  L +    F       + +  + L 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 66  VLRL 69
            L L
Sbjct: 477 FLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 2   SLSKLPSGI---SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLI 58
           +LS             SL HLDLS      +      LE+L++L+  H+    +      
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 59  SGFSKLEVLRL 69
               KL  L +
Sbjct: 421 LSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
              + L +  +N  +L  LDLS+  +  +       L +L+ LN+ H   L  +     +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYN 518

Query: 60  GFSKLEVLRL 69
               L  L  
Sbjct: 519 QLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
            L  L S   SN   L  LDLSR  I  +  +    L  L  L L     +    P   S
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFS 101

Query: 60  GFSKLEVLRL 69
           G + LE L  
Sbjct: 102 GLTSLENLVA 111

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            LSK+P  I +  S  ++DLS   +  L         +L++L+L     +  I  +   
Sbjct: 21 QKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWH 77

Query: 60 GFSKLEVLRL 69
          G   L  L L
Sbjct: 78 GLHHLSNLIL 87

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  +       L  L +L L+   I          L  L  L    T  L+ +    I 
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIG 125

Query: 60  GFSKLEVLRL 69
               L+ L +
Sbjct: 126 QLITLKKLNV 135

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 43/227 (18%)

Query: 2   SLSKLPSGI-----SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQ 56
            +  +          N      LD+S   I  +  +     KL  L L      S I   
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 57  LISGFSKLEVLRLLSRG-----RWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFR 111
            +   + L V RL+           + E      LCD    +  +   L + N       
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD----VTIDEFRLTYTN-DFSDDI 278

Query: 112 SSLAVQKFLKYPKL--VSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK 169
                   +    L  VSI                 +  +      Q L +   +L++  
Sbjct: 279 VKFHCLANVSAMSLAGVSIKY---------------LEDVPKHFKWQSLSIIRCQLKQ-- 321

Query: 170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 216
                            L ++ L   +G      V + +L  L++  
Sbjct: 322 ---------FPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            L ++  G+   L  L  L++S  N+  L       L  L  L+    R +      L  
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQH 542

Query: 60  GFSKLEVLRL 69
               L    L
Sbjct: 543 FPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSI 52
           +L  L S   + L SL  LD S   I           + L + NL +     I
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L+ +     +   +  + L    +  + + L+  + L + +L    F         S   
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 63  KLEVLRLLSRGRWSVLEEEE---------GSVLCDD-AEPLMKELLGLKHL 103
           +++ +   +  + +   EEE         G+  C+D   P    L+ L H 
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +  +   +     L  LDLS   +  +  E ++   + +++L + + + I   + +    
Sbjct: 181 IYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQ 237

Query: 63  KLEVLRL 69
            LE   L
Sbjct: 238 NLEHFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 6  LPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKL 64
          +     N        ++ +++        ++   ++ L+L     LS I    ++ F+KL
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKL 60

Query: 65 EVLRL 69
          E+L L
Sbjct: 61 ELLNL 65

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++S++           ++ L+   IT L   +     +++YL+L      ++   +L + 
Sbjct: 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 61  FSKLEVLRL 69
              LE L L
Sbjct: 168 SDTLEHLNL 176

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 2  SLSKLPSGI-SNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLIS 59
          SL +  + +  +  ++  LDLS   ++ +   +L    KL  LNL     L       + 
Sbjct: 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LE 77

Query: 60 GFSKLEVLRL 69
            S L  L L
Sbjct: 78 SLSTLRTLDL 87

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 8/60 (13%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           +    S+  L  +  NI+ +       +  + + L + + ++++        S+++ L L
Sbjct: 95  LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 3   LSKLPSG--ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +  +      ++  +L HL+L    I  +  ++    KL+ L+L   + L+ + P+    
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNK-LAFMGPE-FQS 212

Query: 61  FSKLEVLRL 69
            + +  + L
Sbjct: 213 AAGVTWISL 221

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 23/206 (11%), Positives = 59/206 (28%), Gaps = 21/206 (10%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L+ +     +   +  + L    +  + + L+  + L + +L    F           FS
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF---FS 259

Query: 63  KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY 122
           K + ++ +++     L  +                        L   F   L   K  ++
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY----CCEDLPAPFADRLIALKRKEH 315

Query: 123 PKL-VSITQSVWVECGTYTRPPFNVLHLAY-------------MENLQELELGSSKLEEM 168
             L    +++  +EC    +     +                  +    LE     L+E 
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 169 KIDSTEEVKKLFRNGFRSLNTVVLRS 194
             +      +L     +++  + L+ 
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQH 401

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 18/173 (10%), Positives = 48/173 (27%), Gaps = 22/173 (12%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            +  +   +     L  LDLS   +  +  E ++   + +++L + + + I   + +   
Sbjct: 180 FIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFS 236

Query: 62  SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHL--NVLSWSFRSSLAVQKF 119
             LE    L    +           C        +   ++ +    +      +      
Sbjct: 237 QNLEHFD-LRGNGFH----------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 120 LKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS 172
                  +        C     P  + L     +    L    S+ E ++ + 
Sbjct: 286 PTLGHYGAYC------CEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 2  SLSKLPSGI-SNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
          SL +  + +  +  ++  LDLS   ++ +   +L    KL  LNL        +    + 
Sbjct: 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LE 77

Query: 60 GFSKLEVLRL 69
            S L  L L
Sbjct: 78 SLSTLRTLDL 87

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++S++           ++ L+   IT L   +     +++YL+L      ++   +L + 
Sbjct: 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 61  FSKLEVLRL 69
              LE L L
Sbjct: 168 SDTLEHLNL 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 10 ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLR 68
            N        ++ +++        ++   ++ L+L     LS I    ++ F+KLE+L 
Sbjct: 6  KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLN 64

Query: 69 L 69
          L
Sbjct: 65 L 65

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
             +    S+  L  +  NI+ +       +  + + L + + ++++        S+++ L
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYL 149

Query: 68  RL 69
            L
Sbjct: 150 DL 151

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 3   LSKLPSG--ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +  +      ++  +L HL+L    I  +  ++    KL+ L+L   + L+ + P+    
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNK-LAFMGPE-FQS 212

Query: 61  FSKLEVLRL 69
            + +  + L
Sbjct: 213 AAGVTWISL 221

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 40/222 (18%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  +     S L SL  L L + N+T +P E L  L  L  L L H   ++ I       
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYS--- 195

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
           F +L  L++L    W  L+    + L           L L  L+ ++    +++      
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCL---------YGLNLTSLS-ITHCNLTAVPYLAVR 245

Query: 121 KYPKLVSITQS----VWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEV 176
               L  +  S      +E             L  +  LQE++L   +L  ++       
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSM----------LHELLRLQEIQLVGGQLAVVE------- 288

Query: 177 KKLFRNGFRSLNTVVLRSCRGKDLTWLVF--VQNLKQLNMQG 216
              FR G   L  + +   +   L   VF  V NL+ L +  
Sbjct: 289 PYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 33/216 (15%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  L     ++   L  L+L+   ++ +       L  LR L L   R L +IP  + +
Sbjct: 43  RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFT 101

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119
           G S L  L  +S  +  +L +            + ++L  LK L  +  +    ++ + F
Sbjct: 102 GLSNLTKLD-ISENKIVILLDY-----------MFQDLYNLKSLE-VGDNDLVYISHRAF 148

Query: 120 LKYPKLVSIT----QSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS--- 172
                L  +T        +              L+++  L  L L    +  ++  S   
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEA----------LSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQN 208
              +K L  + +  L+T+      G +LT L     
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
               +P GI        LDL +  I  L Q+   +   L  L L+    +S + P   +
Sbjct: 21 KRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFN 77

Query: 60 GFSKLEVLRL 69
              L  L L
Sbjct: 78 NLFNLRTLGL 87

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 41/222 (18%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +  +  G  + L +L+ L+L    +T +P      L KL+ L L +   +  IP    + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR 158

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
              L  L L    R S +         + A        GL +L  L+ +  +   +    
Sbjct: 159 IPSLRRLDLGELKRLSYIS--------EGA------FEGLSNLRYLNLAMCNLREIPNLT 204

Query: 121 KYPKLVSITQS----VWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEV 176
              KL  +  S      +  G+             + +LQ+L +  S+++ ++       
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGS----------FQGLMHLQKLWMIQSQIQVIE------- 247

Query: 177 KKLFRNGFRSLNTVVLRSCRGKDLTWLVF--VQNLKQLNMQG 216
           +  F    +SL  + L       L   +F  + +L+++++  
Sbjct: 248 RNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +L ++P+ ++ L+ L  LDLS  +++ +     + L  L+ L +  ++ + +I       
Sbjct: 196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDN 253

Query: 61  FSKLEVLRL 69
              L  + L
Sbjct: 254 LQSLVEINL 262

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
            LS +  G    L +L +L+L+  N+  +P  L  L KL  L+L     LS I P    G
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQG 229

Query: 61  FSKLEVLRL 69
              L+ L +
Sbjct: 230 LMHLQKLWM 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +  +      +L  L  L LSR +I  +       L  L  L L   R L+ IP      
Sbjct: 76  IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134

Query: 61  FSKLEVLRL 69
            SKL+ L L
Sbjct: 135 LSKLKELWL 143

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +L ++P GIS   +   L+L    I  +     K L  L  L L     +  I     +
Sbjct: 53  KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFN 109

Query: 60  GFSKLEVLRL 69
           G + L  L L
Sbjct: 110 GLANLNTLEL 119

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 1   LSLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           LS     S       SL +LDLS   +  +      LE+L +L+  H+    +    +  
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 60  GFSKLEVLRL 69
               L  L +
Sbjct: 124 SLRNLIYLDI 133

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSI-IPPQLI 58
            L+ +P+GI    S   L+L    +  LP      L +L  L+L            Q  
Sbjct: 17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 59 SGFSKLEVLRL 69
           G + L+ L L
Sbjct: 75 FGTTSLKYLDL 85

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGL---PQELKALEKLRYLNLDHTRFLSIIPPQLI 58
           L  LP G+   L  L  L LS   ++      Q       L+YL+L     +  +     
Sbjct: 40  LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF- 97

Query: 59  SGFSKLEVLRL 69
            G  +LE L  
Sbjct: 98  LGLEQLEHLDF 108

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  L   + S+L +L  L L   +I  + +   + + +L+ L L   + +S  P +LI  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKD 158

Query: 61  FSKLEVLRLLS 71
            +KL  L LL 
Sbjct: 159 GNKLPKLMLLD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L+ + S     + +L +LDLS  ++  L +     L+ L  L L +   + ++       
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFED 134

Query: 61  FSKLEVLRL 69
            ++L+ L L
Sbjct: 135 MAQLQKLYL 143

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 2   SLSKLPSGI--SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLI 58
           +LS+L +    + L +LH L LS  ++  +  E    +  LRYL+L     L  +   L 
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108

Query: 59  SGFSKLEVLRL 69
           S    LEVL L
Sbjct: 109 SDLQALEVLLL 119

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLI 58
            L  +P  +        LDLS  N++ L  E     L  L  L L H   L+ I  +  
Sbjct: 28 QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAF 84

Query: 59 SGFSKLEVLRL 69
               L  L L
Sbjct: 85 VPVPNLRYLDL 95

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           ++SKL       L  L  L+L    ++ L  +       L  L+L     +  I      
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV 118

Query: 60  GFSKLEVLRL 69
               L  L L
Sbjct: 119 KQKNLITLDL 128

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
            L +LP+   +    L  LD+    I+ L P+  + L  L+ LNL H   LS +  +  +
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFA 94

Query: 60  GFSKLEVLRL 69
             + L  L L
Sbjct: 95  FCTNLTELHL 104

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 1   LSLSKLPSGI---SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQ 56
            SL  L +          LH L+L++  I+ +  +    L  L  L+L        +  Q
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 57  LISGFSKLEVLRL 69
              G   +  + L
Sbjct: 425 EWRGLENIFEIYL 437

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
          L L+++P  +    ++  L+L+   +  L         +L  L++     +S + P+L  
Sbjct: 14 LKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQ 70

Query: 60 GFSKLEVLRL 69
              L+VL L
Sbjct: 71 KLPMLKVLNL 80

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
              ++P     +L  L  +DL   N+  LP         L+ LNL      S+       
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 60  GFSKLEVLRL 69
            F  L  L +
Sbjct: 607 AFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 17/169 (10%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
            LS+L     +   +L  L L   +I  +        + L  L+L H   LS        
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQV 142

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119
               L+ L L S  +   L+ EE  +              LK L  LS +     +   F
Sbjct: 143 QLENLQELLL-SNNKIQALKSEELDIFA---------NSSLKKLE-LSSNQIKEFSPGCF 191

Query: 120 LKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEM 168
               +L  +  +              +       +++ L L +S+L   
Sbjct: 192 HAIGRLFGLFLN---NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSI-------I 53
           ++   PS    L +L  LDLS  NI  +  + L+ LEKL  L+L H     +        
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 54  PPQLISGFSKLEVLRL 69
           P   + G S L +L L
Sbjct: 528 PIYFLKGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 3   LSKLPSG-ISNLVSLHHLDLSRTNITGL---PQELKALEKLRYLNLDHTRFLSIIPPQLI 58
             +L     + + SL  L L R  +  +   P   + L  L  L+L +   ++ I   ++
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDML 500

Query: 59  SGFSKLEVLRL 69
            G  KLE+L L
Sbjct: 501 EGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSI-IPPQLISGFSKL 64
                 L ++  + LS      L +     +  L+ L L      ++   P        L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 65  EVLRL 69
            +L L
Sbjct: 483 TILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 45/295 (15%), Positives = 96/295 (32%), Gaps = 61/295 (20%)

Query: 2   SLSKLPSGI---SNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQL 57
            LS   +         +L  LDLS  N+  +       L +L Y  L++   +  +    
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHS 291

Query: 58  ISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ 117
           + G   +  L L        +       + D +         LK L  L+          
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS------FQWLKCLEHLN---------- 335

Query: 118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVK 177
             ++   +  I  ++                   + NL+ L L +S      + +     
Sbjct: 336 --MEDNDIPGIKSNM----------------FTGLINLKYLSLSNSFTSLRTLTN----- 372

Query: 178 KLFRN-GFRSLNTVVLRSCRGKDLTWLVF--VQNLKQLNMQGFTMEEIISVDKLS----- 229
           + F +     L+ + L   +   +    F  + +L+ L++    + + ++  +       
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 230 ---DISE--IIGSEHNIFA---RLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH 276
               +S    +    N FA    L+ L + R   +K+V  +P PF  L+ + +  
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLML-RRVALKNVDSSPSPFQPLRNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
          VS    D S   +T +P +L     +  LNL H + L  +P    + +S+L  L +
Sbjct: 4  VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDV 56

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE----LKALEKLRYLNLDHTRFLSIIPPQ 56
            + +   G    +  L  L L+   +     E      A   +R L+L +++  +     
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 57  LIS-GFSKLEVLRL 69
            +   ++ L +L L
Sbjct: 242 FLGLKWTNLTMLDL 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 59/231 (25%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           + ++  G  + L SL+ L+L    +T +P    + L KLR L L +   +  IP    + 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR 169

Query: 61  FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL 120
              L  L L    +   +         + A        GL +L  L+    +   +    
Sbjct: 170 VPSLMRLDLGELKKLEYIS--------EGA------FEGLFNLKYLNLGMCNIKDMPNLT 215

Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAY-------------MENLQELELGSSKLEE 167
               L                     L ++              + +L++L + +S++  
Sbjct: 216 PLVGL-------------------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVF--VQNLKQLNMQG 216
           ++       +  F  G  SL  + L       L   +F  ++ L +L++  
Sbjct: 257 IE-------RNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++  +P+ ++ LV L  L++S  +   +       L  L+ L + +++ +S+I      G
Sbjct: 207 NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDG 264

Query: 61  FSKLEVLRL 69
            + L  L L
Sbjct: 265 LASLVELNL 273

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
            L  +  G    L +L +L+L   NI  +P  L  L  L  L +        I P    G
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHG 240

Query: 61  FSKLEVLRL 69
            S L+ L +
Sbjct: 241 LSSLKKLWV 249

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +  + +    +L  L  L L R +I  +       L  L  L L     L++IP      
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEY 145

Query: 61  FSKLEVLRL 69
            SKL  L L
Sbjct: 146 LSKLRELWL 154

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
             LS++P GI    +  +L+L   NI  +  +  + L  L  L L     +  I     +
Sbjct: 64  RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFN 120

Query: 60  GFSKLEVLRL 69
           G + L  L L
Sbjct: 121 GLASLNTLEL 130

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSI-----IPP 55
           S+S + +G  +N   L  L L+   +  +P  L   + ++ + L +    +I      PP
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 56  QLISGFSKLEVLRL 69
              +  +    + L
Sbjct: 287 GYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 1   LSLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L  S + +G    +  L ++ ++ TNIT +PQ L     L  L+LD  + ++ +    + 
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK-ITKVDAASLK 213

Query: 60  GFSKLEVLRL 69
           G + L  L L
Sbjct: 214 GLNNLAKLGL 223

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L L K+P  +        LDL    IT +     K L+ L  L L + + +S I P   +
Sbjct: 41  LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97

Query: 60  GFSKLEVLRL 69
              KLE L L
Sbjct: 98  PLVKLERLYL 107

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            ++K+ +     L +L  L LS  +I+ +    L     LR L+L++ + L  +P  L +
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL-A 260

Query: 60  GFSKLEVLRL 69
               ++V+ L
Sbjct: 261 DHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 8/76 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-------LKALEKLRYLNLDHTRF-LSII 53
            L K+P G+++   +  + L   NI+ +                   ++L         I
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 54  PPQLISGFSKLEVLRL 69
            P           ++L
Sbjct: 311 QPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           +SK+  G  + LV L  L LS+  +  LP+++   + L+ L +     ++ +   + +G 
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGL 144

Query: 62  SKLEVLRL 69
           +++ V+ L
Sbjct: 145 NQMIVVEL 152

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            ++++  G   NL +LH L L    I+ +       L KL  L L   + L  +P ++  
Sbjct: 63  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM-- 119

Query: 60  GFSKLEVLRL 69
               L+ LR+
Sbjct: 120 -PKTLQELRV 128

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNIT--GLPQE-LKALEKLRYLNLDHTRFLSIIPPQLI 58
           ++K+   + + L  +  ++L    +   G+     + ++KL Y+ +  T  ++ IP  L 
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL- 190

Query: 59  SGFSKLEVLRL 69
                L  L L
Sbjct: 191 --PPSLTELHL 199

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 23/233 (9%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE---LKALEKLRYLNLDHTRFLSIIPPQL 57
            +  L       L  L  L L    ++    +    + L+ L  L+L   +  S+     
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 58  ISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ 117
               + L+ +   S  +  ++ E E   L    +        L   ++ S          
Sbjct: 144 FGKLNSLKSID-FSSNQIFLVCEHELEPL----QGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 118 KFLKYPKLVSITQS------VWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKID 171
              +   L  +  S            +          L    ++     G   +++   +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 172 STEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFV--QNLKQLNMQGFTMEEI 222
           +   + +       S+  + L       L   VF   ++LK LN+    + +I
Sbjct: 259 TFAGLARS------SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 40/278 (14%), Positives = 75/278 (26%), Gaps = 53/278 (19%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +L+++P  ++       L LS   I  +       LE+L+ L L        I  +   
Sbjct: 14  CNLTQVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 60  GFSKLEVLRLLSRGRWSVLEEE------------------EGSVLCDDAEPLMKELLGLK 101
               L +L  L   +   L  +                    +VL D      + L  L 
Sbjct: 71  NLPNLRILD-LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY---FRNLKALT 126

Query: 102 HLNV---------LSWSFRSSLAVQK-FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 151
            L++         L  SF    +++       ++  + +                L    
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----------LEPLQ--- 172

Query: 152 MENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQ 211
            + L    L ++ L         +    FRN    L  + +            F   + +
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRN--MVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 212 LNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLT 249
                  +   I          I   + N FA L   +
Sbjct: 231 SQAFSLILAHHIMGAGFGF-HNIKDPDQNTFAGLARSS 267

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLI 58
           LS +KL +     ++ + + LS   +  L     L  +  L+ L L+  RF S    Q  
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 59  SGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVL 106
           S    LE L L        L+    + LC D         GL HL VL
Sbjct: 448 SENPSLEQLFLGENM----LQLAWETELCWDV------FEGLSHLQVL 485

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           L K+       +  L  L +S   +  L    + +  L+ L+L H   L +   +    F
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQF 323

Query: 62  SKLEVLRL 69
            +LE L L
Sbjct: 324 DRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L  L      + +L  LDLS  ++  + +     ++L  L LDH   +  +     S   
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKL---STHH 345

Query: 63  KLEVLRL 69
            L+ L L
Sbjct: 346 TLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           + ++ +   +   ++  L +    I  LP    + +  L  L L+    LS +P  +   
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHN 145

Query: 61  FSKLEVLRL 69
             KL  L +
Sbjct: 146 TPKLTTLSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 12  NLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
            L +   +    + +  LP   L +  ++  LNL+  + +  I     +    ++ L +
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYM 106

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           L+     + N   L  +DLS   +  +       +++L  L + + R +++         
Sbjct: 244 LTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPI 300

Query: 62  SKLEVLRL 69
             L+VL L
Sbjct: 301 PTLKVLDL 308

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 34/225 (15%), Positives = 70/225 (31%), Gaps = 33/225 (14%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           ++ KLP+ +  +   +  L+L+   I  +          ++ L +     +  +PP +  
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQ 120

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119
               L VL L  R   S L              +      L  L+ +S +    +    F
Sbjct: 121 NVPLLTVLVL-ERNDLSSLPRG-----------IFHNTPKLTTLS-MSNNNLERIEDDTF 167

Query: 120 LKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKL 179
                L ++  S               + L+ + +L    +  + L  + I    E    
Sbjct: 168 QATTSLQNLQLS---------SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218

Query: 180 FRNG--------FRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG 216
             N            L  + L+     D  WL+    L ++++  
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            L  +P GI    +   + L    I+ +P    +A   L  L L     L+ I     +
Sbjct: 21 QGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFT 77

Query: 60 GFSKLEVLRL 69
          G + LE L L
Sbjct: 78 GLALLEQLDL 87

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L +L  G+   L +L +L L    +  LP +  + L  L +L L   R +S +P +   G
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG 175

Query: 61  FSKLEVLRL 69
              L+ L L
Sbjct: 176 LHSLDRLLL 184

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  +       L  LH L L R  +  L     + L  L+YL L     L  +P      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRD 151

Query: 61  FSKLEVLRL 69
              L  L L
Sbjct: 152 LGNLTHLFL 160

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           +L  LP     +L +L HL L    I+ +P+   + L  L  L L   R ++ + P    
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFR 198

Query: 60  GFSKLEVLRL 69
              +L  L L
Sbjct: 199 DLGRLMTLYL 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +S +P+       +L  L L    +  +       L  L  L+L     L  + P    G
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 61  FSKLEVLRL 69
             +L  L L
Sbjct: 104 LGRLHTLHL 112

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           +S +P      L SL  L L +  +  +     + L +L  L L     LS +P + ++ 
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAP 223

Query: 61  FSKLEVLRL 69
              L+ LRL
Sbjct: 224 LRALQYLRL 232

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
            S + NL +L  L L+  NI+ +   L  L K+  LNL     LS + P  +S  + L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNY 159

Query: 67  LRL 69
           L +
Sbjct: 160 LTV 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +S +   ++NL  ++ L+L   +       L  +  L YL +  ++   + P   I+  +
Sbjct: 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLT 177

Query: 63  KLEVLRL 69
            L  L L
Sbjct: 178 DLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 7  PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
                L S+  L ++   +  +   ++ L  L YLNL+  +   I P   +S   KL  
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTN 92

Query: 67 LRL 69
          L +
Sbjct: 93 LYI 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S +++L SLH+       IT +   +  + +L  L + + +   + P   ++  S+L  L
Sbjct: 193 SPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWL 248

Query: 68  RL 69
            +
Sbjct: 249 EI 250

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S ++NL  L  L++    I+ +   +K L KL+ LN+   + +S I    ++  S+L  L
Sbjct: 237 SPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISV--LNNLSQLNSL 292

Query: 68  RL 69
            L
Sbjct: 293 FL 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 7   PSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLE 65
            S ++NL  L+ L L+   +     + +  L  L  L L       I P   ++  SK++
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMD 336

Query: 66  VLRL 69
               
Sbjct: 337 SADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
            GI  L +L +L+L+   IT +   L  L KL  L +   + ++ I    +   + L  L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNK-ITDISA--LQNLTNLREL 115

Query: 68  RL 69
            L
Sbjct: 116 YL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +  +   I+NL  L+ L L+   I  +   L +L  L Y      +   I P   ++  +
Sbjct: 167 VKDVT-PIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP---VANMT 221

Query: 63  KLEVLRL 69
           +L  L++
Sbjct: 222 RLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 60/227 (26%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S +SNLV L +L +    IT +   L+ L  LR L L+      I P   ++  +K+  L
Sbjct: 82  SPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP---LANLTKMYSL 137

Query: 68  RLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVS 127
            L +    S L                  L  +  LN L             +   K+  
Sbjct: 138 NLGANHNLSDLSP----------------LSNMTGLNYL------------TVTESKVKD 169

Query: 128 ITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSL 187
           +T                   +A + +L  L L  +++E++       +  L      SL
Sbjct: 170 VT------------------PIANLTDLYSLSLNYNQIEDI-----SPLASL-----TSL 201

Query: 188 NTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEI 234
           +       +  D+T +  +  L  L +    + ++  +  LS ++ +
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWL 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 8  SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
             ++L       L + ++T +    + LE +  L +   +  SI     I   + LE L
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG---IEYLTNLEYL 71

Query: 68 RL 69
           L
Sbjct: 72 NL 73

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           L K+       +  L  L +S   +  L    + +  L+ L+L H   L +   +    F
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQF 317

Query: 62  SKLEVLRL 69
            +LE L L
Sbjct: 318 DRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L  L      + +L  LDLS  ++  + +     ++L  L LDH   +  +     S   
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKL---STHH 339

Query: 63  KLEVLRL 69
            L+ L L
Sbjct: 340 TLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLIS 59
           ++  LP  +  N+  L  L L R +++ LP+ +     KL  L++ +   L  I      
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ 162

Query: 60  GFSKLEVLRL 69
             + L+ L+L
Sbjct: 163 ATTSLQNLQL 172

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           + ++ +   +   ++  L +    I  LP    + +  L  L L+    LS +P  +   
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHN 139

Query: 61  FSKLEVLRL 69
             KL  L +
Sbjct: 140 TPKLTTLSM 148

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           L+     + N   L  +DLS   +  +       +++L  L + + R +++         
Sbjct: 238 LTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPI 294

Query: 62  SKLEVLRL 69
             L+VL L
Sbjct: 295 PTLKVLDL 302

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 12  NLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
            L +   +    + +  LP   L +  ++  LNL+  + +  I     +    ++ L +
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYM 100

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            LS LP GI  N   L  L +S  N+  +  +  +A   L+ L L   R L+ +     S
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---S 183

Query: 60  GFSKLEVLRL 69
               L    +
Sbjct: 184 LIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           ++  +++  LD S  +I  +        +L  L L H     +     +  +  L  + L
Sbjct: 201 LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN---LTDTAWLLNYPGLVEVDL 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
             G+  L +L  ++ S   +T +   LK L KL  + +++ +   I P   ++  + L  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP---LANLTNLTG 116

Query: 67  LRL 69
           L L
Sbjct: 117 LTL 119

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S ++ L +L +L+L+   +  +   +  L+ L YL L       I P   +S  +KL+ L
Sbjct: 281 SPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 336

Query: 68  RL 69
             
Sbjct: 337 FF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
              +++L +L  LDL+   I+ L   L  L KL  L L   +  +I P   ++G + L  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP---LAGLTALTN 291

Query: 67  LRL 69
           L L
Sbjct: 292 LEL 294

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
              ++NL +L  LD+S   ++ +   L  L  L  L   + +   I P   +   + L+ 
Sbjct: 170 LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP---LGILTNLDE 225

Query: 67  LRL 69
           L L
Sbjct: 226 LSL 228

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S +S+L  L  L      ++ +   L  L  + +L+  H +   + P   ++  +++  L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQL 380

Query: 68  RL 69
            L
Sbjct: 381 GL 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
            S ++ L +L  L  +   I+ +   L  L  L  L+L+  + L  I    ++  + L  
Sbjct: 192 ISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDIGT--LASLTNLTD 247

Query: 67  LRL 69
           L L
Sbjct: 248 LDL 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           + ++NL +L  L L    IT +   LK L  L  L L       I     +SG + L+ L
Sbjct: 106 TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA---LSGLTSLQQL 161

Query: 68  RL 69
             
Sbjct: 162 SF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
             + NL +L+ L+LS   I+ +   L  L  L+ L+  + +   + P   ++  + LE L
Sbjct: 128 DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLKP---LANLTTLERL 182

Query: 68  RL 69
            +
Sbjct: 183 DI 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 2  SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
          +++   S  ++L  +  L   R  I  +   ++ L  L  +N  + +   I P   +   
Sbjct: 35 NVTDTVS-QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNL 89

Query: 62 SKLEVLRL 69
          +KL  + +
Sbjct: 90 TKLVDILM 97

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 8  SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
             + L       L +TN+T        L+++  L  D    +  I    +   + L  +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLG-IKSIDG--VEYLNNLTQI 73

Query: 68 RL 69
            
Sbjct: 74 NF 75

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
            S ++NL +++ L      I+ L   L  L ++  L L+     +  P    +  S    
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQA-WTNAPVNYKANVSIPNT 403

Query: 67  LRLLS 71
           ++ ++
Sbjct: 404 VKNVT 408

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L L  +P  IS       LDL   +I+ L ++  K L+ L  L L + + +S I  +  S
Sbjct: 43  LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99

Query: 60  GFSKLEVLRL 69
              KL+ L +
Sbjct: 100 PLRKLQKLYI 109

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  S    G  + + L++L +S   +TG+P++L   E L  L+LDH + +  I  + +  
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLR 215

Query: 61  FSKLEVLRL 69
           +SKL  L L
Sbjct: 216 YSKLYRLGL 224

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +  +          L+ L L    I  +    L  L  LR L+LD+ + LS +P  L  
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL-P 261

Query: 60  GFSKLEVLRL 69
               L+V+ L
Sbjct: 262 DLKLLQVVYL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG- 60
           +  + +G  S L +L  L L    ++ +P  L  L+ L+ + L     ++ +        
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV 287

Query: 61  -----FSKLEVLRL 69
                 +    + L
Sbjct: 288 GFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           +SK+     S L  L  L +S+ ++  +P  L     L  L +   R +  +P  + SG 
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNR-IRKVPKGVFSGL 146

Query: 62  SKLEVLRL 69
             +  + +
Sbjct: 147 RNMNCIEM 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            +S+L       L  L+ L L    I+ + ++    L KL+ L +     L  IPP L  
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL-- 121

Query: 60  GFSKLEVLRL 69
             S L  LR+
Sbjct: 122 -PSSLVELRI 130

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-------LKALEKLRYLNLDHTRF-LSII 53
            LS++P+G+ +L  L  + L   NIT +                   ++L +       +
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 54  PPQLISGFSKLEVLRL 69
            P      +    ++ 
Sbjct: 312 QPATFRCVTDRLAIQF 327

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           +  L  G  S L SL  L    TN+  L       L+ L+ LN+ H    S   P+  S 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 61  FSKLEVLRL 69
            + LE L L
Sbjct: 148 LTNLEHLDL 156

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 2  SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
          +  K+P  +    S  +LDLS   +  L      +  +L+ L+L     +  I       
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS 74

Query: 61 FSKLEVLRL 69
           S L  L L
Sbjct: 75 LSHLSTLIL 83

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  L S    +   L  LDLSR  I  +     ++L  L  L L     +  +     SG
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98

Query: 61  FSKLEVLRL 69
            S L+ L  
Sbjct: 99  LSSLQKLVA 107

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           SL+ +PSG++   ++  LDLS   IT +    L+    L+ L L     ++ I     S 
Sbjct: 42  SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSS 98

Query: 61  FSKLEVLRL 69
              LE L L
Sbjct: 99  LGSLEHLDL 107

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           LS L S     L SL  L+L       L +      L KL+ L + +    + I  +  +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 60  GFSKLEVLRL 69
           G + LE L +
Sbjct: 172 GLTFLEELEI 181

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 18/129 (13%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           + +K+     + L  L  L++  +++     + LK+++ + +L L   +   ++    + 
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD 219

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119
             S +E L L    R + L+    S L       + +    +++ +   S    + +   
Sbjct: 220 VTSSVECLEL----RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--L 273

Query: 120 LKYPKLVSI 128
            +   L+ +
Sbjct: 274 NQISGLLEL 282

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++ +     S+L SL HLDLS   ++ L     K L  L +LNL    + ++    L S 
Sbjct: 88  INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 61  FSKLEVLRLLSRGRWSVLEE 80
            +KL++LR+ +   ++ ++ 
Sbjct: 148 LTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 1   LSLSKLPSGISN----LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQ 56
              S+L +G +N      +  ++ ++  ++  + + L  +  L  L     + L  +P  
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDG 295

Query: 57  LISGFSKLEVLRL 69
           +    + L+ + L
Sbjct: 296 IFDRLTSLQKIWL 308

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++K+       L  L  L+LS+  +  +   + + L+KL  L+L +   +  +  Q   G
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLG 369

Query: 61  FSKLEVLRL 69
              L+ L L
Sbjct: 370 LPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 46/225 (20%), Positives = 70/225 (31%), Gaps = 18/225 (8%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITG--LPQEL-KALEKLRYLNLDHTRFLSIIPPQLI 58
             +L +G  + L +L  L L++ N+ G  L     K L  L  L L       I P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 59  SGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQK 118
               +  VL  L+  +   + EE       + +     LL L     L       L  +K
Sbjct: 151 LNMRRFHVLD-LTFNKVKSICEE----DLLNFQGKHFTLLRLSS-ITLQDMNEYWLGWEK 204

Query: 119 FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKK 178
                K  SIT       G                 +Q L L +S         T   K 
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-NFKD 263

Query: 179 LFRNGFRSLNTVVLRS--CRGKDLTWL---VFVQ--NLKQLNMQG 216
                F+ L    +++       +  L   VF    +L+QL +  
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  + S +  NL  L  LDLS  +I  L  +    L  L+ L LD  + L  +P  +   
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDR 393

Query: 61  FSKLEVLRLLS 71
            + L+ + L +
Sbjct: 394 LTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 14 VSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
            ++++DLS  +I  L +     L+ L++L ++      +I      G S L +L+L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            ++++PS +    +   L    T +  + +        L  + +     L +I   + S
Sbjct: 19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 60 GFSKLEVLRLL 70
             KL  +R+ 
Sbjct: 77 NLPKLHEIRIE 87

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTN-ITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L  + + + SNL  LH + + + N +  +  E  + L  L+YL + +T  +  +P     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKI 125

Query: 60  GFSKLEVLRLLS 71
              +  +L +  
Sbjct: 126 HSLQKVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           L +LP+ +         LD+SRT I  LP   L+ L+KLR  +  +   L  +P   +  
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT--LEK 244

Query: 61  FSKLEVLRL 69
              L    L
Sbjct: 245 LVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLI 58
            L  +  G  S    L  +++S+ ++  + +      L KL  + ++    L  I P+  
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 59  SGFSKLEVLRL 69
                L+ L +
Sbjct: 101 QNLPNLQYLLI 111

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKA-LEKLRYLNLDHTRFLSIIPPQLIS 59
           +L  +      NL +L +L +S T I  LP   K    +   L++     +  I      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 60  GFS-KLEVLRL 69
           G S +  +L L
Sbjct: 151 GLSFESVILWL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 4   SKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           S     +S L SL  LD+S +        ++  L K+  ++L +   ++ I P  +    
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLP 159

Query: 63  KLEVLRL 69
           +L+ L +
Sbjct: 160 ELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
            + I+ L  ++ +DLS          LK L +L+ LN+             I  F KL  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQ 185

Query: 67  LRL 69
           L  
Sbjct: 186 LYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           +GI    ++  L ++  + T     +  L  L  L +      S   P L SG + L +L
Sbjct: 60  TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLL 117

Query: 68  RL 69
            +
Sbjct: 118 DI 119

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           + + SL ++ L+  N+T L   ++    ++ L +++    +  P   ISG S LE LR+
Sbjct: 40 EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRI 95

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTN-ITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLIS 59
           L  +PS   SNL ++  + +S    +  L       L K+ ++ + +TR L+ I P  + 
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 60  GFSKLEVLRL 69
               L+ L +
Sbjct: 103 ELPLLKFLGI 112

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLI 58
           +L+ +       L  L  L +  T +   P    + + +    L +    +++ IP    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 59  SGFSK-LEVLRL 69
            G       L+L
Sbjct: 152 QGLCNETLTLKL 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTN-ITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLI 58
           +L +L S    NL  + H+++  T  +T +  + LK L  L++L + +T          +
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 59  SGFSKLEVLRLLS 71
                  +L +  
Sbjct: 127 YSTDIFFILEITD 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 2  SLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISG 60
           + ++PS      S   L L  T++  +P      L  +  + +     L  +       
Sbjct: 22 DIQRIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 61 FSKLEVLRL 69
           SK+  + +
Sbjct: 79 LSKVTHIEI 87

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 6   LPSGISNLVSLHHLDLSRTNITGLPQELKA--LEKLRYLNLDHTRFLSIIPPQLISGFSK 63
             +  +  V L  LDLS  ++             +L  LNL  T  L  +P  L    +K
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL---PAK 275

Query: 64  LEVLRL 69
           L VL L
Sbjct: 276 LSVLDL 281

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L LS LP    +L     L  S  ++T LP+  ++L+ L   N +    LS +PP L  
Sbjct: 81  LGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDLPPLLEY 135

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L +LP  + NL  L  +      +  LP    +LE L   +   T       P+L    +
Sbjct: 227 LEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL-----PELPQSLT 280

Query: 63  KLEVLRL 69
            L+V   
Sbjct: 281 FLDVSEN 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            L KLP  + N   L  +D+   ++  LP        L ++   + + L  +P   +   
Sbjct: 142 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQ-LEELPE--LQNL 194

Query: 62  SKLEVLRL 69
             L  +  
Sbjct: 195 PFLTAIYA 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SL KLP    +L     +      +  LP EL+ L  L  +  D+   L  +P   +S  
Sbjct: 164 SLKKLPDLPPSLE---FIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLS-- 216

Query: 62  SKLEVLRL 69
             LE +  
Sbjct: 217 --LESIVA 222

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           SL KLP    +L     +      +  LP EL+ L  L  +  D+   L  +P       
Sbjct: 206 SLKKLPDLPLSL---ESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLP---- 256

Query: 62  SKLEVLRLLS 71
             LE L +  
Sbjct: 257 PSLEALNVRD 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            L +LP  + NL  L  +     ++  LP        L  +   +   L  +P   +   
Sbjct: 184 QLEELPE-LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNI-LEELPE--LQNL 236

Query: 62  SKLEVLRL 69
             L  +  
Sbjct: 237 PFLTTIYA 244

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L  LP  ++ L  L  L  S   +  +   +  L +L+ L L + R       Q +    
Sbjct: 475 LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 63  KLEVLRL 69
           +L +L L
Sbjct: 534 RLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
             L+ L   +  L+ + HLDLS   +  LP  L AL  L  L        +      + G
Sbjct: 451 KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN------VDG 503

Query: 61  FSKLEVLRLLS 71
            + L  L+ L 
Sbjct: 504 VANLPRLQELL 514

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           +  L   +      L +LDLS   +  +         L++L+L    F ++   +     
Sbjct: 57  IQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 62  SKLEVLRL 69
           S+L+ L L
Sbjct: 115 SQLKFLGL 122

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 52/316 (16%), Positives = 106/316 (33%), Gaps = 33/316 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISG 60
            L  +P  +S       L++S+  I+ L   ++ +L KLR L + H R +  +   +   
Sbjct: 11  GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKF 67

Query: 61  FSKLEVLRL-------LSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSF--- 110
             +LE L L       +S      L+  + S    DA P+ KE   +  L  L  S    
Sbjct: 68  NQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 111 -RSSLAVQKFLKYPKLVSITQSVWVEC---GTYTRPPFNVLHLAYMENLQ-ELELGSSKL 165
            +SS+     L   K++ +    + E              LH+ +  N +    L  S  
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 166 EEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK----------DLTWLVFVQNLKQLNMQ 215
               ++ +     L  N      +++ +               + TW  F++ L+ +   
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 216 GFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQV- 274
                 I +V     +             L+ L++ +  +    +P    +     + + 
Sbjct: 248 TVWYFSISNVKLQGQLDF--RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 275 -FHCRQLKKLPLNSSS 289
            F     + + +   S
Sbjct: 306 NFTVSGTRMVHMLCPS 321

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 1   LSLSKLPSGISN--LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLI 58
           +S + L   I       +  LDL    I  +P+++  LE L+ LN+   + L  +P  + 
Sbjct: 406 MSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIF 464

Query: 59  SGFSKLEVLRL 69
              + L+ + L
Sbjct: 465 DRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKA---LEKLRYLNLDHTRFLSIIPPQL 57
            L+        +L  L  L L    +  L +  +    ++ L+ L++             
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 58  ISGFSKLEVLRL 69
            S    L  L +
Sbjct: 395 CSWTKSLLSLNM 406

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            LSK+    + + SL  LD+S+ +++   ++      + L  LN+        I   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 60  GFSKLEVLRL 69
              +++VL L
Sbjct: 420 -PPRIKVLDL 428

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           +L+ LP+    L +L   ++S   +T LP     L +L   +   T  L  +P  L  
Sbjct: 72  NLTSLPALPPELRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPALPSGLCK 125

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L+ LP   S L     L + R  +T LP+ L  L     +NL+    LS    Q +   +
Sbjct: 253 LTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREIT 308

Query: 63  KLEVL--RLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWS 109
                   ++           E   L   A   +      +      W 
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 16/80 (20%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALE--------------KLRYLNLDHT 47
            L+ LP     L+ L       T++  LP  L  L                L+ L++   
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151

Query: 48  RFLSIIPPQLISGFSKLEVL 67
           +  S+  P L S   KL   
Sbjct: 152 QLASL--PALPSELCKLWAY 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            L+ LP  +     +  L +   N+T LP       +LR L +   +  S+  P L  G 
Sbjct: 51  GLTTLPDCLPA--HITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLTSL--PVLPPGL 103

Query: 62  SKLEVLRL 69
            +L +   
Sbjct: 104 LELSIFSN 111

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           + ++ L +L  L L    IT +   L  L  L+YL++ + +   + P   ++  SKL  L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTL 178

Query: 68  RL 69
           + 
Sbjct: 179 KA 180

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
            G+  L +L  L+L    IT L   LK L K+  L L      ++     I+G   ++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVSA---IAGLQSIKTL 112

Query: 68  RL 69
            L
Sbjct: 113 DL 114

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S ++ L +L +L +    ++ L   L  L KL  L  D  +   I P   ++    L  +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP---LASLPNLIEV 200

Query: 68  RL 69
            L
Sbjct: 201 HL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           + ++NL  L  L      I+ +   L +L  L  ++L + +   + P   ++  S L ++
Sbjct: 167 TPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIV 222

Query: 68  RL 69
            L
Sbjct: 223 TL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S I+ L S+  LDL+ T IT +   L  L  L+ L LD  +  +I P   ++G + L+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYL 156

Query: 68  RL 69
            +
Sbjct: 157 SI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 53/235 (22%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
               ++L  +  L    T +T +   ++ L  L  L L   +   + P   +   +K+  
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITE 89

Query: 67  LRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLV 126
           L  LS      +                  + GL+ +  L  +      V        L 
Sbjct: 90  LE-LSGNPLKNVS----------------AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 127 S-------ITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKL 179
                   IT               N+  LA + NLQ L +G++++ ++       +  L
Sbjct: 133 VLYLDLNQIT---------------NISPLAGLTNLQYLSIGNAQVSDL-----TPLANL 172

Query: 180 FRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEI 234
                  L T+     +  D++ L  + NL +++++   + ++  +   S++  +
Sbjct: 173 -----SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           +G+ +L  L  L L    IT +   L  L KL  L+L+  +   I+P   ++G +KL+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNL 183

Query: 68  RL 69
            L
Sbjct: 184 YL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           + +S L  L  L L    I+ +   L  L KL+ L L       +     ++G   L+VL
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVL 205

Query: 68  RL 69
            L
Sbjct: 206 EL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
             ++NL +L  L L    +  L   LK L+KL+ L+L+H     I     +    +LE L
Sbjct: 84  KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING---LVHLPQLESL 139

Query: 68  RL 69
            L
Sbjct: 140 YL 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
            GI  L ++  L L+   +T +   L  L+ L +L LD  +   +     +    KL+ L
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSL 117

Query: 68  RL 69
            L
Sbjct: 118 SL 119

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLIS 59
            +S+L       L SL+ L L    IT LP+ L + L  L+ L L+  + ++ +      
Sbjct: 67  QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDA-- 123

Query: 60  GFSKLEVLRLLS 71
            F  L  L LLS
Sbjct: 124 -FQDLHNLNLLS 134

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2   SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLIS 59
            L  L    +  L  L +L + ++ +  +  +      +L  LNL     L  +  + + 
Sbjct: 43  HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ 101

Query: 60  GFSKLEVLRL 69
           G S L+ L L
Sbjct: 102 GLS-LQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 9e-04
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 17 HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
            L  +R         L   E L  L +++ + L  +  + + G  +L  L +
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           + +S L  L  L L    I+ +   L  L KL+ L L       +     ++G   L+VL
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVL 202

Query: 68  RL 69
            L
Sbjct: 203 EL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           S + +L  L  L L    I+ +   L  L +L  L L + +   I     +S  +KL+ L
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTL 158

Query: 68  RL 69
            L
Sbjct: 159 SL 160

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
            GI  L ++  L L+   +T + + L  L+ L +L LD  +   +     +    KL+ L
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSL 114

Query: 68  RL 69
            L
Sbjct: 115 SL 116

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 31/231 (13%), Positives = 72/231 (31%), Gaps = 69/231 (29%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
                       +L + ++T        L  +  +  +++   S+     I     +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKL 70

Query: 68  RL----LSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYP 123
            L    L+                      +K L  LK+L  L            FL   
Sbjct: 71  FLNGNKLTD---------------------IKPLTNLKNLGWL------------FLDEN 97

Query: 124 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNG 183
           K+  ++                   L  ++ L+ L L  + + ++       +  L    
Sbjct: 98  KIKDLS------------------SLKDLKKLKSLSLEHNGISDI-----NGLVHL---- 130

Query: 184 FRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEI 234
              L ++ L + +  D+T L  +  L  L+++   + +I+ +  L+ +  +
Sbjct: 131 -PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 180

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           +  L   +      L +LD+S   +  +      +  LR+L+L    F  +   +     
Sbjct: 88  IRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 62  SKLEVLRL 69
           +KL  L L
Sbjct: 146 TKLTFLGL 153

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           L+ LP G    L  L  L L    +  LP  L     KL  L+L +   L+ +P  L++G
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG 170

Query: 61  FSKLEVLRL 69
              L+ L L
Sbjct: 171 LENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
            L+KL      L  L  LDLS   +  LP   + L  L  L++   R L+ +P   + G 
Sbjct: 66  ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGL 123

Query: 62  SKLEVLRL 69
            +L+ L L
Sbjct: 124 GELQELYL 131

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           L  +   +   L SL  L L    IT +  +    L  +R L+L   + ++ + P     
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDT 151

Query: 61  FSKLEVLRLLS 71
              L  L LL+
Sbjct: 152 LHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 3   LSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISG 60
           ++ +  G       ++ + L+   +  +  ++ K LE L+ L L   R ++ +       
Sbjct: 69  ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGN---DS 124

Query: 61  FSKLEVLRLLS 71
           F  L  +RLLS
Sbjct: 125 FIGLSSVRLLS 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
           S++ +  GI  L  L  L  +  NIT L   L     L YL  D  +  ++     ++  
Sbjct: 53  SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD----VTPL 105

Query: 62  SKLEVLRL 69
           +KL  L  
Sbjct: 106 TKLTYLNC 113

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           +++   L+ LD     IT L   L    KL YL L++T  L+ +    +S  +KL+ L  
Sbjct: 293 VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTE-LTELD---VSHNTKLKSLSC 346

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           +++L   +S    L+ L+    NIT L   L    +L +L+    + L+ I    ++  +
Sbjct: 182 ITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEID---VTPLT 233

Query: 63  KLEVLRL 69
           +L     
Sbjct: 234 QLTYFDC 240

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
             L +L  LD   ++IT +   ++ L  L  L       ++ +    +S  + L  L  
Sbjct: 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLAC 92

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
             + +L +L  L +    +  +   L  L KL  L+L      +      ++   K+  +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG---LTRLKKVNWI 177

Query: 68  RL 69
            L
Sbjct: 178 DL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8  SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
               L +    +L + ++T L    K L  ++  N D++   S+     +  F+ L+ L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKEL 68

Query: 68 RL 69
           L
Sbjct: 69 HL 70

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8  SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
               L  + + +   +NI  L   ++    L+ L+L H +   + P   +   +KLE L
Sbjct: 35 VSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEEL 90

Query: 68 RL 69
           +
Sbjct: 91 SV 92

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 3   LSKLPSGISNLVSL----HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQL 57
           L  LP+                     IT +P+ + +L+    + L+     S I   L
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLIS 59
            LS LPS     L  L  L L+   +  LP  + K L+ L  L +   + L  +P  +  
Sbjct: 48  KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFD 106

Query: 60  GFSKLEVLRL 69
               L  LRL
Sbjct: 107 QLVNLAELRL 116

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 2   SLSKLPSGI-SNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLIS 59
            L  LP G+   LV+L  L L R  +  LP  +  +L KL YL+L +   L  +P  +  
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFD 154

Query: 60  GFSKLEVLRL 69
             + L+ LRL
Sbjct: 155 KLTSLKELRL 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.28
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.0
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.92
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.68

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=6.7e-23  Score=183.29  Aligned_cols=238  Identities=19%  Similarity=0.208  Sum_probs=185.1

Q ss_pred             cccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchh
Q 037371           13 LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEP   92 (330)
Q Consensus        13 l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   92 (330)
                      ..++++|++++|.+..+|..++++++|++|++++|.+. .+|.. ++++++|++|++++|.+               . .
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l---------------~-~  141 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPL---------------R-A  141 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCC---------------C-C
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCcc---------------c-c
Confidence            37899999999999999999999999999999999885 88886 89999999999999988               3 4


Q ss_pred             hHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCc
Q 037371           93 LMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS  172 (330)
Q Consensus        93 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  172 (330)
                      ++..+.++++|++|++++|....        .....+....           ....+..+++|++|+++.|.++.+.. .
T Consensus       142 lp~~l~~l~~L~~L~L~~n~~~~--------~~p~~~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~lp~-~  201 (328)
T 4fcg_A          142 LPASIASLNRLRELSIRACPELT--------ELPEPLASTD-----------ASGEHQGLVNLQSLRLEWTGIRSLPA-S  201 (328)
T ss_dssp             CCGGGGGCTTCCEEEEEEETTCC--------CCCSCSEEEC------------CCCEEESTTCCEEEEEEECCCCCCG-G
T ss_pred             CcHHHhcCcCCCEEECCCCCCcc--------ccChhHhhcc-----------chhhhccCCCCCEEECcCCCcCcchH-h
Confidence            56678999999999999875321        0011111110           11246789999999999888774422 1


Q ss_pred             ccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecc
Q 037371          173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMW  251 (330)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  251 (330)
                              ...+++|++|++++|.+..++ .++.+++|++|++++|.+.+..+            ..++.+++|++|+++
T Consensus       202 --------l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p------------~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          202 --------IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP------------PIFGGRAPLKRLILK  261 (328)
T ss_dssp             --------GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC------------CCTTCCCCCCEEECT
T ss_pred             --------hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH------------HHhcCCCCCCEEECC
Confidence                    357889999999999776654 68889999999999966655544            267889999999999


Q ss_pred             cccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCCCCceEEeccHHHHhhccc
Q 037371          252 RGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQW  309 (330)
Q Consensus       252 ~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~i~~~~~~~~~l~~  309 (330)
                      +|.....++.....+++|+.|++++|+.++.+|.....+. .+..+..+......+.+
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l~l~~~~~~~l~~  318 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLDQ  318 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEEECCGGGSCC---
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEEeCCHHHHHHHhh
Confidence            9988888887777899999999999999999998887766 45555655555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.2e-22  Score=179.94  Aligned_cols=209  Identities=19%  Similarity=0.267  Sum_probs=161.0

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+..+|..++++++|++|++++|.+..+|..++.+++|++|++++|.+. .+|.. ++++++|++|++++|..      
T Consensus        91 n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L~~n~~------  162 (328)
T 4fcg_A           91 VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPE------  162 (328)
T ss_dssp             SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEEEEETT------
T ss_pred             CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEECCCCCC------
Confidence            56789999999999999999999999999999999999999999999885 88887 99999999999999877      


Q ss_pred             ccCccccCCchhhHHHh---------ccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccc
Q 037371           81 EEGSVLCDDAEPLMKEL---------LGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY  151 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  151 (330)
                               .+..+..+         ..+++|++|++++|.+.                             .....+..
T Consensus       163 ---------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------------~lp~~l~~  204 (328)
T 4fcg_A          163 ---------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----------------------------SLPASIAN  204 (328)
T ss_dssp             ---------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----------------------------CCCGGGGG
T ss_pred             ---------ccccChhHhhccchhhhccCCCCCEEECcCCCcC-----------------------------cchHhhcC
Confidence                     22334333         34677777777765422                             22234777


Q ss_pred             ccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccc-ccc-CcccccCCccEEEEecccccccccccccc
Q 037371          152 MENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRG-KDL-TWLVFVQNLKQLNMQGFTMEEIISVDKLS  229 (330)
Q Consensus       152 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~l-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~  229 (330)
                      +++|++|++++|.++.+...         ...+++|++|++++|.+ ..+ ..++++++|++|+|++|.+.+..+     
T Consensus       205 l~~L~~L~L~~N~l~~l~~~---------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-----  270 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSALGPA---------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-----  270 (328)
T ss_dssp             CTTCCEEEEESSCCCCCCGG---------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----
T ss_pred             CCCCCEEEccCCCCCcCchh---------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----
Confidence            88888888887777754321         35678888999988833 333 357888899999998855544434     


Q ss_pred             cccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEcc
Q 037371          230 DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH  276 (330)
Q Consensus       230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~  276 (330)
                             ..+..+++|++|++++|.....++.....+++|+.+.+..
T Consensus       271 -------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          271 -------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             -------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             -------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence                   1567788899999998888888887777788888887765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=1.1e-23  Score=187.17  Aligned_cols=236  Identities=16%  Similarity=0.143  Sum_probs=106.4

Q ss_pred             cCChhhhccccccEeecCC-CCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371            5 KLPSGISNLVSLHHLDLSR-TNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~-~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      .+|..|+++++|++|++++ |.+. .+|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+        
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l--------  137 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNAL--------  137 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEE--------
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCcc--------
Confidence            3555555555555555553 4444 45555555555555555555554444443 55555555555555554        


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEEEechhh-HHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA-VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG  161 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (330)
                             ....+..+..+++|++|++++|.+.. +...  .......|+.|++....  ........+..++ |+.|+++
T Consensus       138 -------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          138 -------SGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNR--LTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             -------ESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSE--EEEECCGGGGGCC-CSEEECC
T ss_pred             -------CCcCChHHhcCCCCCeEECcCCcccCcCCHH--HhhhhhcCcEEECcCCe--eeccCChHHhCCc-ccEEECc
Confidence                   22344445555555555555554321 1100  00111134444441111  1222223333443 5555555


Q ss_pred             ccCcceeeeCcccccCccCCCCCCCccEEEEecccccc-cCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371          162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD-LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN  240 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      .|.++...+..        ...+++|++|++++|.+.. ++.+..+++|++|++++|.+.+..+            ..+.
T Consensus       206 ~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------------~~l~  265 (313)
T 1ogq_A          206 RNMLEGDASVL--------FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP------------QGLT  265 (313)
T ss_dssp             SSEEEECCGGG--------CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC------------GGGG
T ss_pred             CCcccCcCCHH--------HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC------------hHHh
Confidence            44444332221        2344555555555553332 2334445555555555555543323            1344


Q ss_pred             cCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCC
Q 037371          241 IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKK  282 (330)
Q Consensus       241 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~  282 (330)
                      .+++|++|+++++.--..++.. ..+++|+.+++.+++.+..
T Consensus       266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            4555555555555222233222 3355555555555444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=5.2e-22  Score=181.66  Aligned_cols=257  Identities=16%  Similarity=0.178  Sum_probs=143.0

Q ss_pred             CCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      .+.++|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|.+. .+++.+++++++|++|++++|.+     
T Consensus        56 ~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l-----  129 (390)
T 3o6n_A           56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-----  129 (390)
T ss_dssp             EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCcc-----
Confidence            45678876 6888899999999998886654 7788899999999988774 44444488899999999998887     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                .......+.++++|++|++++|.+.....  .....+.+|+.|++ +..-   ...   .+..+++|+.|
T Consensus       130 ----------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l---~~~---~~~~l~~L~~L  191 (390)
T 3o6n_A          130 ----------SSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRL---THV---DLSLIPSLFHA  191 (390)
T ss_dssp             ----------CCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCC---SBC---CGGGCTTCSEE
T ss_pred             ----------CcCCHHHhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcC---Ccc---cccccccccee
Confidence                      21222335778888888888876543221  12233566777777 3221   111   23444455555


Q ss_pred             EEEccCcceeeeCcccc--------cCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc-
Q 037371          159 ELGSSKLEEMKIDSTEE--------VKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS-  229 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-  229 (330)
                      +++.+.++.+.......        -...+...+++|++|++++|.+...+++..+++|++|+++++.+.++.+..... 
T Consensus       192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             ECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence            44443333221100000        000011223456666666665555555666666666666666555553320000 


Q ss_pred             -c-----cccccc----CccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371          230 -D-----ISEIIG----SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       230 -~-----~~~~~~----~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                       .     +.++..    .....+++|+.|+++++ .+..++.....+++|+.|++.+| .++.+|
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~  334 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK  334 (390)
T ss_dssp             SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred             ccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC
Confidence             0     000000    02344556666666655 44444433334566666666664 455555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.8e-21  Score=181.46  Aligned_cols=93  Identities=20%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             CCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371          182 NGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV  259 (330)
Q Consensus       182 ~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  259 (330)
                      ..+++|++|++++|.+....  .+.++++|++|++++|.+.++.+            ..+..+++|+.|+++++ .+..+
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~  362 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS------------RMFENLDKLEVLDLSYN-HIRAL  362 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG------------GGGTTCTTCCEEECCSS-CCCEE
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh------------hHhcCcccCCEEECCCC-ccccc
Confidence            44566666666666554432  45666777777777766666644            26678899999999998 56665


Q ss_pred             -cCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371          260 -YPNPLPFPKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       260 -~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                       +.....+++|++|+++++ +++.+|....
T Consensus       363 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~  391 (455)
T 3v47_A          363 GDQSFLGLPNLKELALDTN-QLKSVPDGIF  391 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred             ChhhccccccccEEECCCC-ccccCCHhHh
Confidence             334556899999999995 7888887553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=9.1e-22  Score=177.67  Aligned_cols=247  Identities=18%  Similarity=0.168  Sum_probs=173.1

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      ++++++|..+.  ++|++|++++|.+..+|. .+.++++|++|++++|.+. .++..+++++++|++|++++|.+     
T Consensus        41 ~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l-----  112 (353)
T 2z80_A           41 GSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-----  112 (353)
T ss_dssp             TTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-----
T ss_pred             CCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcC-----
Confidence            46788998776  489999999999998877 7899999999999999774 44443499999999999999988     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                .......+.++++|++|++++|.+..+... .....+.+|++|++ ++..  ........+..+++|++|
T Consensus       113 ----------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          113 ----------SNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             ----------SSCCHHHHTTCTTCSEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEE
T ss_pred             ----------CcCCHhHhCCCccCCEEECCCCCCcccCch-hhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEE
Confidence                      334455588999999999999876643320 12344677999999 5533  234444568899999999


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccccccccccccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG  236 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~  236 (330)
                      +++.|.++...+..        ...+++|++|++++|.+..++  .+..+++|+.|+++++.+..+......        
T Consensus       180 ~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------  243 (353)
T 2z80_A          180 EIDASDLQSYEPKS--------LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------  243 (353)
T ss_dssp             EEEETTCCEECTTT--------TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred             ECCCCCcCccCHHH--------HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------
Confidence            99988888664443        367889999999999776654  355689999999999988876442110        


Q ss_pred             CccccCcccceeecccccccc-----cccCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371          237 SEHNIFARLEYLTMWRGTNVK-----SVYPNPLPFPKLKKIQVFHCRQLKKLPLNS  287 (330)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~  287 (330)
                       .....+.++.+++.++ .+.     .++.....+++|+.|++++| +++.+|...
T Consensus       244 -~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~  296 (353)
T 2z80_A          244 -TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI  296 (353)
T ss_dssp             ----CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             -cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH
Confidence             1222344444444443 111     12212233566666666664 555666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=3e-21  Score=181.13  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=165.7

Q ss_pred             CCCccCC-hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLP-SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..++ ..|.++++|++|+|++|.+..+ |..+.++++|++|++++|.+ ..+|..+++++++|++|++++|.+    
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i----  116 (477)
T 2id5_A           42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI----  116 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCEEECTTSCC----
T ss_pred             CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCEEECCCCcc----
Confidence            4566664 4688899999999999988855 66788899999999988876 566665578889999999988887    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 ....+..+..+++|+.|++++|.+..+..  ..+..+.+|+.|++.-..  ........+..+++|+.|
T Consensus       117 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          117 -----------VILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             -----------CEECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEE
T ss_pred             -----------ccCChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEE
Confidence                       33444556677777777777765433211  122234556666662212  122223335555666666


Q ss_pred             EEEccCcceeeeCccccc----------------CccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371          159 ELGSSKLEEMKIDSTEEV----------------KKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME  220 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~  220 (330)
                      +++.+.++.+....+...                .........+|++|++++|.+..++  .+..+++|+.|+|++|.+.
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            665554444322111000                0000112236777777777666655  4678888999999888888


Q ss_pred             ccccccccccccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCCCCCCCCCCC
Q 037371          221 EIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCRQLKKLPLNS  287 (330)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~lp~~~  287 (330)
                      .+.+            ..+..+++|+.|+++++ .+..+... ...+++|+.|+++++ +++.+|...
T Consensus       262 ~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  315 (477)
T 2id5_A          262 TIEG------------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV  315 (477)
T ss_dssp             EECT------------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred             ccCh------------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence            7755            26778899999999988 55555433 445899999999996 777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=182.05  Aligned_cols=232  Identities=17%  Similarity=0.184  Sum_probs=172.8

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      ++.++|..+.  +++++|+|++|.+..++ ..+..+++|++|++++|.+ ..++...+.++++|++|++++|.+      
T Consensus        54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l------  124 (440)
T 3zyj_A           54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL------  124 (440)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCC------
T ss_pred             CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcC------
Confidence            5778888776  68999999999998665 5788999999999999977 455544589999999999999888      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                               .......+..+++|+.|++++|.+..+..  .....+.+|+.|++ ++..  ........+..+++|++|+
T Consensus       125 ---------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          125 ---------TTIPNGAFVYLSKLKELWLRNNPIESIPS--YAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             ---------SSCCTTTSCSCSSCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEE
T ss_pred             ---------CeeCHhHhhccccCceeeCCCCcccccCH--HHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeec
Confidence                     32334467889999999999887654322  12334567888888 5544  3333444678888899998


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      ++.|.++.+.          ....+++|++|+|++|.+..+  ..+.++++|+.|+|++|.+..+.+            .
T Consensus       192 L~~n~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~  249 (440)
T 3zyj_A          192 LAMCNLREIP----------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER------------N  249 (440)
T ss_dssp             CTTSCCSSCC----------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------T
T ss_pred             CCCCcCcccc----------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh------------h
Confidence            8877777442          235678888999988866654  357888889999998888888765            2


Q ss_pred             ccccCcccceeecccccccccccCCC-CCCCCccEEEEccCC
Q 037371          238 EHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHCR  278 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~  278 (330)
                      .+..+++|+.|+++++ .+..++... ..+++|+.|++.+++
T Consensus       250 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             SSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             hhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            6777888889988887 666666554 347888888887643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.5e-21  Score=182.10  Aligned_cols=232  Identities=18%  Similarity=0.168  Sum_probs=167.1

Q ss_pred             CCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      ++.++|..+.  +++++|+|++|.+..+ |..+..+++|++|++++|.+. .++...+.++++|++|++++|.+      
T Consensus        65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l------  135 (452)
T 3zyi_A           65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL------  135 (452)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC------
T ss_pred             CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcC------
Confidence            5677887765  5899999999998865 557889999999999999774 44443488999999999999888      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                               .......+..+++|++|++++|.+..+..  .....+.+|+.|++ ++..  ........+..+++|++|+
T Consensus       136 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          136 ---------TVIPSGAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             ---------SBCCTTTSSSCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEE
T ss_pred             ---------CccChhhhcccCCCCEEECCCCCcceeCH--hHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEE
Confidence                     32344557788999999999887654321  12334566788887 5544  3333444577888888888


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      ++.|.++.+.          ....+++|++|+|++|.+..+  ..+.++++|+.|++++|.+..+.+            .
T Consensus       203 L~~n~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~  260 (452)
T 3zyi_A          203 LGMCNIKDMP----------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER------------N  260 (452)
T ss_dssp             CTTSCCSSCC----------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT------------T
T ss_pred             CCCCcccccc----------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH------------H
Confidence            8877776442          235677888888888866554  357778888888888888877755            2


Q ss_pred             ccccCcccceeecccccccccccCCCC-CCCCccEEEEccCC
Q 037371          238 EHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFHCR  278 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~c~  278 (330)
                      .+..+++|+.|+++++ .+..++.... .+++|+.|++.+++
T Consensus       261 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          261 AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            5677788888888887 6666555433 47788888877653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=5.7e-21  Score=179.29  Aligned_cols=250  Identities=16%  Similarity=0.184  Sum_probs=170.4

Q ss_pred             CCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      ++.++|..+.  +++++|++++|.+..+ |..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+      
T Consensus        22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l------   92 (477)
T 2id5_A           22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRL------   92 (477)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC------
T ss_pred             CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcC------
Confidence            5788998775  5899999999999976 458899999999999999875544554 99999999999999988      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                               .......+.++++|++|++++|.+....  ......+.+|+.|++.-+.  ........+..+++|+.|++
T Consensus        93 ---------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           93 ---------KLIPLGVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             ---------CSCCTTSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEE
T ss_pred             ---------CccCcccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEEC
Confidence                     3233445788999999999988765432  1223446779999993322  34444567889999999999


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccc-ccccccccccc--------
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFT-MEEIISVDKLS--------  229 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~-l~~~~~~~~~~--------  229 (330)
                      +.+.++.+....+        ..+++|+.|++++|.+..++  .+..+++|+.|+++++. +..++......        
T Consensus       160 ~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  231 (477)
T 2id5_A          160 EKCNLTSIPTEAL--------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI  231 (477)
T ss_dssp             ESCCCSSCCHHHH--------TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred             CCCcCcccChhHh--------cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence            9888876543332        45667777777777444432  35556666666666522 22221110000        


Q ss_pred             ---cccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCCCCCCC
Q 037371          230 ---DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCRQLKKL  283 (330)
Q Consensus       230 ---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~l  283 (330)
                         .+...+...+..+++|+.|+++++ .+..+... ...+++|+.|++.++ ++..+
T Consensus       232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  287 (477)
T 2id5_A          232 THCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVV  287 (477)
T ss_dssp             ESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEE
T ss_pred             cCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceE
Confidence               000000024567889999999988 46665554 345899999999885 44443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.6e-21  Score=188.00  Aligned_cols=257  Identities=16%  Similarity=0.184  Sum_probs=141.5

Q ss_pred             CCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      .+..+|.. +.++++|++|++++|.+..+|. .+..+++|++|++++|.+.+ +|+.+++++++|++|++++|.+     
T Consensus        62 ~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l-----  135 (597)
T 3oja_B           62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-----  135 (597)
T ss_dssp             EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCC-----
Confidence            45677765 6888899999999988886654 78888899999998887744 4444478889999999988887     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                ....+..++.+++|++|++++|.+..+..  ..+..+.+|+.|++ ++..   ...   .+..+++|+.|
T Consensus       136 ----------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l---~~~---~~~~l~~L~~L  197 (597)
T 3oja_B          136 ----------SSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRL---THV---DLSLIPSLFHA  197 (597)
T ss_dssp             ----------CCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTSCC---SBC---CGGGCTTCSEE
T ss_pred             ----------CCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCCCC---CCc---Chhhhhhhhhh
Confidence                      22223335788888888888876544221  12233556777777 3322   111   23344445554


Q ss_pred             EEEccCcceeeeCcccc--------cCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc-
Q 037371          159 ELGSSKLEEMKIDSTEE--------VKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS-  229 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-  229 (330)
                      ++++|.++.+.......        -...+...+++|+.|++++|.+..++++..+++|+.|+|++|.+.++.+..... 
T Consensus       198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence            44433333221100000        000001112455555555555555555555555555555555555543310000 


Q ss_pred             ------c-----ccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCC
Q 037371          230 ------D-----ISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPL  285 (330)
Q Consensus       230 ------~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~  285 (330)
                            .     +.+.+ .....+++|+.|+++++ .+..++.....+++|+.|++++| .+..+|.
T Consensus       278 ~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~  341 (597)
T 3oja_B          278 QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL  341 (597)
T ss_dssp             SSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC
T ss_pred             cCCCEEECCCCCCCCCC-cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcCh
Confidence                  0     00000 03344566666666665 34444433344666666666664 4555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=3.4e-22  Score=194.09  Aligned_cols=255  Identities=11%  Similarity=0.118  Sum_probs=163.1

Q ss_pred             CCccCChhhhccccccEeecCCCCCcc------------------cChhhh--cCcccceeccCCCCCCCCCchhhhCCC
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITG------------------LPQELK--ALEKLRYLNLDHTRFLSIIPPQLISGF   61 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~------------------lp~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~~l   61 (330)
                      .++.+|..|+++++|++|+|++|.++.                  +|..++  ++++|++|++++|.+.+.+|.. ++++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l  272 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKAL  272 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTC
T ss_pred             CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcC
Confidence            455699999999999999999999997                  999998  9999999999999998999986 9999


Q ss_pred             CCCcEEEeccCC-CCCccccccCccccCCch-hhHHHhccC------cCcceeeEEEechhhHHHhhccccccCceEEEE
Q 037371           62 SKLEVLRLLSRG-RWSVLEEEEGSVLCDDAE-PLMKELLGL------KHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVW  133 (330)
Q Consensus        62 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  133 (330)
                      ++|++|++++|. +               .+ .++..+.++      ++|++|++++|.+..++... ....+.+|+.|+
T Consensus       273 ~~L~~L~Ls~n~~l---------------~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~-~l~~l~~L~~L~  336 (636)
T 4eco_A          273 PEMQLINVACNRGI---------------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET-SLQKMKKLGMLE  336 (636)
T ss_dssp             SSCCEEECTTCTTS---------------CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH-HHTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC---------------ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh-hhccCCCCCEEe
Confidence            999999999998 6               44 677777776      89999999988766433200 223355678887


Q ss_pred             E-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCC-ccEEEEecccccccC-cccc--cCC
Q 037371          134 V-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRS-LNTVVLRSCRGKDLT-WLVF--VQN  208 (330)
Q Consensus       134 l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~l~-~l~~--l~~  208 (330)
                      + ++..   .+... .+..+++|+.|++++|.++.+...         ...+++ |++|++++|.+..++ .+..  +++
T Consensus       337 L~~N~l---~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~---------l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          337 CLYNQL---EGKLP-AFGSEIKLASLNLAYNQITEIPAN---------FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             CCSCCC---EEECC-CCEEEEEESEEECCSSEEEECCTT---------SEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             CcCCcC---ccchh-hhCCCCCCCEEECCCCccccccHh---------hhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence            7 3322   21222 667777777777776665533211         133444 556666555444433 2222  225


Q ss_pred             ccEEEEecccccccccccccc--------------cc-----cccccCccccCcccceeecccccccccccCCCCC-C--
Q 037371          209 LKQLNMQGFTMEEIISVDKLS--------------DI-----SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-F--  266 (330)
Q Consensus       209 L~~L~L~~~~l~~~~~~~~~~--------------~~-----~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~--  266 (330)
                      |+.|++++|.+....+.....              .+     ...+...+..+++|++|+++++ .+..++..... .  
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE  482 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence            555555555444432211100              00     0000012334677777777776 45555544332 1  


Q ss_pred             -----CCccEEEEccCCCCCCCCCCCc
Q 037371          267 -----PKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       267 -----~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                           ++|+.|++++| +++.+|....
T Consensus       483 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~  508 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFN-KLTKLSDDFR  508 (636)
T ss_dssp             ECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred             cccccCCccEEECcCC-cCCccChhhh
Confidence                 17788888775 5667776544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=1.4e-20  Score=168.25  Aligned_cols=240  Identities=17%  Similarity=0.148  Sum_probs=182.1

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +++.++|..+.  +++++|++++|.++.+|. .+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+ +.  
T Consensus        41 ~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l-~~--  114 (330)
T 1xku_A           41 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQL-KE--  114 (330)
T ss_dssp             SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCC-SB--
T ss_pred             CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcC-Cc--
Confidence            35678887765  689999999999998776 7899999999999999885555665 99999999999999988 22  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                   ++..+.  ++|++|++++|.+.....  .....+.+|+.|++..............+..+++|+.|+
T Consensus       115 -------------l~~~~~--~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          115 -------------LPEKMP--KTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             -------------CCSSCC--TTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             -------------cChhhc--ccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence                         122222  689999999887654322  112335678888883222111123445688999999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      ++.+.++.+..           ..+++|++|++++|.+...  ..+..+++|+.|++++|.+.++.+            .
T Consensus       178 l~~n~l~~l~~-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~  234 (330)
T 1xku_A          178 IADTNITTIPQ-----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN------------G  234 (330)
T ss_dssp             CCSSCCCSCCS-----------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT------------T
T ss_pred             CCCCccccCCc-----------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh------------h
Confidence            99888775421           2237899999999976664  368899999999999999888865            2


Q ss_pred             ccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371          238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                      .+..+++|++|+++++ .+..++.....+++|++|++.++ .++.+|....
T Consensus       235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f  283 (330)
T 1xku_A          235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF  283 (330)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred             hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhc
Confidence            6778899999999998 67777777777999999999995 7888876554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=5.2e-21  Score=172.09  Aligned_cols=237  Identities=17%  Similarity=0.177  Sum_probs=129.3

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+..+|. +..+++|++|++++|.+..+| .+..+++|++|++++|.+ ..++.  +..+++|++|++++|..      
T Consensus        76 n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i-~~~~~--~~~l~~L~~L~l~~n~~------  144 (347)
T 4fmz_A           76 NQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI-SDISP--LANLTKMYSLNLGANHN------  144 (347)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCC-CCCGG--GTTCTTCCEEECTTCTT------
T ss_pred             Cccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcc-cCchh--hccCCceeEEECCCCCC------
Confidence            35666665 888888888888888888775 578888888888888866 45555  77888888888888754      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                               ... ...+..+++|+.|+++++.......    ...+.+|++|++ ++..   ..  ...+..+++|+.|+
T Consensus       145 ---------~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l---~~--~~~~~~l~~L~~L~  205 (347)
T 4fmz_A          145 ---------LSD-LSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQI---ED--ISPLASLTSLHYFT  205 (347)
T ss_dssp             ---------CCC-CGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCC---CC--CGGGGGCTTCCEEE
T ss_pred             ---------ccc-ccchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCcc---cc--cccccCCCccceee
Confidence                     111 2226666777777776665443332    123444666666 3221   11  11144445555555


Q ss_pred             EEccCcceeeeCcc------------cccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccc
Q 037371          160 LGSSKLEEMKIDST------------EEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDK  227 (330)
Q Consensus       160 l~~~~~~~~~~~~~------------~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~  227 (330)
                      ++++.++....-..            ......+...+++|++|++++|.+..++.+..+++|++|+++++.+.++ +   
T Consensus       206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~---  281 (347)
T 4fmz_A          206 AYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-S---  281 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G---
T ss_pred             cccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-h---
Confidence            54443332211000            0000001234455555555555444444455555555555555555444 1   


Q ss_pred             cccccccccCccccCcccceeeccccccccccc-CCCCCCCCccEEEEccCCCCCCC
Q 037371          228 LSDISEIIGSEHNIFARLEYLTMWRGTNVKSVY-PNPLPFPKLKKIQVFHCRQLKKL  283 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~i~~c~~L~~l  283 (330)
                                .+..+++|+.|++++| .+.... .....+++|+.|++++|+ ++.+
T Consensus       282 ----------~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          282 ----------VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             ----------GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred             ----------hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccc
Confidence                      3445566666666665 232222 112335666666666653 4443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=3.4e-21  Score=179.57  Aligned_cols=241  Identities=16%  Similarity=0.169  Sum_probs=156.0

Q ss_pred             hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371            8 SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus         8 ~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      ..|+++++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|. .++.++++|++|++++|.+           
T Consensus        73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-----------  141 (455)
T 3v47_A           73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----------  141 (455)
T ss_dssp             TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-----------
T ss_pred             ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc-----------
Confidence            4577788888888888877744 66777777788888877766443332 2366777777777777766           


Q ss_pred             ccCCchhhHHH-hccCcCcceeeEEEechhhHHH--hhcc------------------------------ccccCceEEE
Q 037371           86 LCDDAEPLMKE-LLGLKHLNVLSWSFRSSLAVQK--FLKY------------------------------PKLVSITQSV  132 (330)
Q Consensus        86 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~--~~~~------------------------------~~~~~~L~~L  132 (330)
                          ....+.. +.++++|++|++++|.+.....  +...                              ......|++|
T Consensus       142 ----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L  217 (455)
T 3v47_A          142 ----KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL  217 (455)
T ss_dssp             ----CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred             ----CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence                1122222 4555556666555554322100  0000                              0001223333


Q ss_pred             EE-EeCC------------------------------------------------------------CCCCCcccccccc
Q 037371          133 WV-ECGT------------------------------------------------------------YTRPPFNVLHLAY  151 (330)
Q Consensus       133 ~l-~~~~------------------------------------------------------------~~~~~~~~~~l~~  151 (330)
                      ++ ++..                                                            +.........+..
T Consensus       218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  297 (455)
T 3v47_A          218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH  297 (455)
T ss_dssp             ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred             ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence            33 1100                                                            0012222344667


Q ss_pred             ccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccc
Q 037371          152 MENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLS  229 (330)
Q Consensus       152 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~  229 (330)
                      +++|++|+++.|.++.+.+..        ...+++|++|++++|.+..+  ..+.++++|++|+|++|.+..+.+     
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----  364 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNA--------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-----  364 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-----
T ss_pred             CCCCCEEECCCCcccccChhH--------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-----
Confidence            788888888877777654433        36789999999999977665  357899999999999999988866     


Q ss_pred             cccccccCccccCcccceeecccccccccccCCC-CCCCCccEEEEccCCCCCCCC
Q 037371          230 DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~~L~~lp  284 (330)
                             ..+..+++|++|+++++ .++.++... ..+++|+.|++.+++--...|
T Consensus       365 -------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          365 -------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             -------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence                   27788999999999998 677776654 458999999999975443343

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=1.3e-20  Score=168.54  Aligned_cols=206  Identities=16%  Similarity=0.202  Sum_probs=91.8

Q ss_pred             CCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            2 SLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      .+..+|. .|+++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|.. +.  ++|++|++++|.+     
T Consensus        63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~-~~--~~L~~L~l~~n~l-----  133 (330)
T 1xku_A           63 KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEK-MP--KTLQELRVHENEI-----  133 (330)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSS-CC--TTCCEEECCSSCC-----
T ss_pred             cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChh-hc--ccccEEECCCCcc-----
Confidence            3444443 355555555555555555533 44455555555555555544 344433 21  4555555555554     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                .......+.++++|+.|++++|..............+.+|++|++ ++.-   .... ..+  .++|++|
T Consensus       134 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l---~~l~-~~~--~~~L~~L  197 (330)
T 1xku_A          134 ----------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIP-QGL--PPSLTEL  197 (330)
T ss_dssp             ----------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC---CSCC-SSC--CTTCSEE
T ss_pred             ----------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc---ccCC-ccc--cccCCEE
Confidence                      223334455555555555555443221111111222344555554 2211   1110 001  1455555


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccccccccccccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG  236 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~  236 (330)
                      ++++|.++.+.+..+        ..+++|++|++++|.+..++  .+..+++|++|++++|.+..++.            
T Consensus       198 ~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~------------  257 (330)
T 1xku_A          198 HLDGNKITKVDAASL--------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG------------  257 (330)
T ss_dssp             ECTTSCCCEECTGGG--------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT------------
T ss_pred             ECCCCcCCccCHHHh--------cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh------------
Confidence            555444444322222        34455555555555443322  34455555555555555544432            


Q ss_pred             CccccCcccceeecccc
Q 037371          237 SEHNIFARLEYLTMWRG  253 (330)
Q Consensus       237 ~~~~~~~~L~~L~l~~~  253 (330)
                       .+..+++|++|+++++
T Consensus       258 -~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          258 -GLADHKYIQVVYLHNN  273 (330)
T ss_dssp             -TTTTCSSCCEEECCSS
T ss_pred             -hhccCCCcCEEECCCC
Confidence             3444555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=6e-20  Score=171.91  Aligned_cols=248  Identities=17%  Similarity=0.265  Sum_probs=140.1

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      ++..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+ ..++.  ++++++|++|++++|.+ +.    
T Consensus        57 ~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~L~~n~l-~~----  126 (466)
T 1o6v_A           57 GIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP--LANLTNLTGLTLFNNQI-TD----  126 (466)
T ss_dssp             CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC-CC----
T ss_pred             CCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-ccChh--hcCCCCCCEEECCCCCC-CC----
Confidence            466777 48889999999999999998876 88999999999999977 45555  88999999999999887 21    


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG  161 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (330)
                                .  ..+.++++|++|++++|.+..+..+    ..+.+|+.|.++...   .  ....+..+++|+.|+++
T Consensus       127 ----------~--~~~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~~~---~--~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          127 ----------I--DPLKNLTNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQV---T--DLKPLANLTTLERLDIS  185 (466)
T ss_dssp             ----------C--GGGTTCTTCSEEEEEEEEECCCGGG----TTCTTCSEEEEEESC---C--CCGGGTTCTTCCEEECC
T ss_pred             ----------C--hHHcCCCCCCEEECCCCccCCChhh----ccCCcccEeecCCcc---c--CchhhccCCCCCEEECc
Confidence                      1  1278899999999998876654432    223445555552111   1  11124444444444444


Q ss_pred             ccCcceeee------------CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc
Q 037371          162 SSKLEEMKI------------DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS  229 (330)
Q Consensus       162 ~~~~~~~~~------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~  229 (330)
                      ++.++.+..            .........+...+++|++|++++|.+..++.+..+++|+.|+++++.+..+.+-....
T Consensus       186 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~  265 (466)
T 1o6v_A          186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT  265 (466)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             CCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCC
Confidence            333332210            00000011112345566666666665555555556666666666665555442200000


Q ss_pred             cc-----ccccc---CccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCC
Q 037371          230 DI-----SEIIG---SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKL  283 (330)
Q Consensus       230 ~~-----~~~~~---~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l  283 (330)
                      .+     .++..   ..+..+++|+.|+++++ .+..+.. ...+++|+.|++++| ++..+
T Consensus       266 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~  324 (466)
T 1o6v_A          266 KLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDI  324 (466)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCC
T ss_pred             CCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCc
Confidence            00     00000   01334555666666555 3333322 234666777777665 34433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=1.3e-20  Score=172.28  Aligned_cols=233  Identities=16%  Similarity=0.168  Sum_probs=165.8

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+|. .|+.+++|++|++++|.+..+|. .+..+++|++|++++|.+ ..+|..+++++++|++|++++|.+    
T Consensus        79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l----  153 (390)
T 3o6n_A           79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL----  153 (390)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC----
T ss_pred             CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCcc----
Confidence            34566664 68888889999999888886654 578888899999988876 567766568888888998888877    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH--Hhhccc------------cc-------------------
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--KFLKYP------------KL-------------------  125 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~------------~~-------------------  125 (330)
                                 ....+..+..+++|++|++++|.+....  .+....            ..                   
T Consensus       154 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          154 -----------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             -----------CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             -----------CccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence                       3234455777788888888777654321  100000            00                   


Q ss_pred             --cCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-
Q 037371          126 --VSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-  201 (330)
Q Consensus       126 --~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-  201 (330)
                        ...|+.|++ ++..   ..  ...+..+++|++|++++|.++...+..+        ..+++|++|++++|.+..++ 
T Consensus       223 ~~~~~L~~L~l~~n~l---~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~  289 (390)
T 3o6n_A          223 PVNVELTILKLQHNNL---TD--TAWLLNYPGLVEVDLSYNELEKIMYHPF--------VKMQRLERLYISNNRLVALNL  289 (390)
T ss_dssp             CCCSSCCEEECCSSCC---CC--CGGGGGCTTCSEEECCSSCCCEEESGGG--------TTCSSCCEEECCSSCCCEEEC
T ss_pred             cccccccEEECCCCCC---cc--cHHHcCCCCccEEECCCCcCCCcChhHc--------cccccCCEEECCCCcCcccCc
Confidence              112444444 2111   11  2457788889999999888876654443        67889999999999776655 


Q ss_pred             cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371          202 WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       202 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                      ....+++|++|++++|.+..++.             .+..+++|++|+++++ .+..++  ...+++|+.|++.+++
T Consensus       290 ~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred             ccCCCCCCCEEECCCCcceecCc-------------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence            35678999999999998887755             5677899999999998 566654  5568999999999864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=5.7e-21  Score=189.36  Aligned_cols=248  Identities=17%  Similarity=0.081  Sum_probs=186.0

Q ss_pred             cCChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371            5 KLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG   83 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (330)
                      .+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+         
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l---------  478 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDL---------  478 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC---------
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcc---------
Confidence            57788888999999999998887 77888888999999999998887788876 88899999999999888         


Q ss_pred             ccccCCchhhHHHhccCcCcceeeEEEechhh-HHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE
Q 037371           84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA-VQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG  161 (330)
Q Consensus        84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (330)
                            .+..+..+.++++|+.|++++|.... ++.   ....+.+|++|++ ++..   .+.....+..+++|+.|+++
T Consensus       479 ------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l---~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          479 ------TGEIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSF---SGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             ------CSCCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCC---EEECCGGGGGCTTCCEEECC
T ss_pred             ------cCcCCHHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcc---cCcCCHHHcCCCCCCEEECC
Confidence                  44567778889999999999887652 222   2233566888888 4432   44556678899999999998


Q ss_pred             ccCcceeeeC-cccc-------------------------------------------------------------cCcc
Q 037371          162 SSKLEEMKID-STEE-------------------------------------------------------------VKKL  179 (330)
Q Consensus       162 ~~~~~~~~~~-~~~~-------------------------------------------------------------~~~~  179 (330)
                      .|.+....+. ....                                                             ..+.
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            6665422111 1000                                                             0011


Q ss_pred             CCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccc
Q 037371          180 FRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVK  257 (330)
Q Consensus       180 ~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  257 (330)
                      ....+++|++|++++|.+..  +..++++++|+.|+|++|.+.+..+            ..++.+++|+.|+++++.--.
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip------------~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP------------DEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC------------GGGGGCTTCCEEECCSSCCEE
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC------------hHHhCCCCCCEEECCCCcccC
Confidence            23456789999999996653  4468999999999999999886656            278889999999999995555


Q ss_pred             cccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371          258 SVYPNPLPFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       258 ~l~~~~~~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                      .++.....+++|++|++++++--..+|..
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            66666677999999999997554557754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=4e-21  Score=190.96  Aligned_cols=254  Identities=12%  Similarity=0.092  Sum_probs=167.4

Q ss_pred             CCccCChhhhccccccEeecCCCCCcc------------------cChhhh--cCcccceeccCCCCCCCCCchhhhCCC
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITG------------------LPQELK--ALEKLRYLNLDHTRFLSIIPPQLISGF   61 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~------------------lp~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~~l   61 (330)
                      ++..+|..|+++++|++|+|++|.+..                  +|..++  ++++|++|++++|.+.+.+|.. ++++
T Consensus       436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L  514 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDL  514 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGC
T ss_pred             cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCC
Confidence            445599999999999999999999997                  999887  9999999999999988999986 9999


Q ss_pred             CCCcEEEeccCC-CCCccccccCccccCCch-hhHHHhccCc-------CcceeeEEEechhhHHHhhccccccCceEEE
Q 037371           62 SKLEVLRLLSRG-RWSVLEEEEGSVLCDDAE-PLMKELLGLK-------HLNVLSWSFRSSLAVQKFLKYPKLVSITQSV  132 (330)
Q Consensus        62 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  132 (330)
                      ++|++|++++|. +               .+ .++..+.+++       +|+.|++++|.+..++.. .....+.+|+.|
T Consensus       515 ~~L~~L~Ls~N~~l---------------sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~l~~L~~L~~L  578 (876)
T 4ecn_A          515 PELQSLNIACNRGI---------------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS-ASLQKMVKLGLL  578 (876)
T ss_dssp             SSCCEEECTTCTTS---------------CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH-HHHTTCTTCCEE
T ss_pred             CCCCEEECcCCCCc---------------ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh-hhhhcCCCCCEE
Confidence            999999999998 6               44 5666666655       999999998876643320 022335568888


Q ss_pred             EE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCC-ccEEEEecccccccC-ccccc--C
Q 037371          133 WV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRS-LNTVVLRSCRGKDLT-WLVFV--Q  207 (330)
Q Consensus       133 ~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~l~-~l~~l--~  207 (330)
                      ++ ++..   .  ....+..+++|+.|+++.|.++.+...         ...+++ |++|+|++|.+..++ .+..+  +
T Consensus       579 ~Ls~N~l---~--~lp~~~~L~~L~~L~Ls~N~l~~lp~~---------l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          579 DCVHNKV---R--HLEAFGTNVKLTDLKLDYNQIEEIPED---------FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             ECTTSCC---C--BCCCCCTTSEESEEECCSSCCSCCCTT---------SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             ECCCCCc---c--cchhhcCCCcceEEECcCCccccchHH---------HhhccccCCEEECcCCCCCcCchhhhccccC
Confidence            87 3322   2  222677788888888887766633211         234555 666666666544443 23332  2


Q ss_pred             CccEEEEecccccccccccc--c----------cccc-----ccccCccccCcccceeecccccccccccCCCCCC----
Q 037371          208 NLKQLNMQGFTMEEIISVDK--L----------SDIS-----EIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPF----  266 (330)
Q Consensus       208 ~L~~L~L~~~~l~~~~~~~~--~----------~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----  266 (330)
                      +|+.|++++|.+...++.-.  .          ..+.     ..+......+++|+.|+++++ .+..++......    
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~  723 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGN  723 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccccc
Confidence            36666666555543322100  0          0000     000012335678888888877 555655544332    


Q ss_pred             ----CCccEEEEccCCCCCCCCCCCc
Q 037371          267 ----PKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       267 ----~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                          ++|+.|++++| ++..+|....
T Consensus       724 l~nl~~L~~L~Ls~N-~L~~lp~~l~  748 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFN-KLTSLSDDFR  748 (876)
T ss_dssp             CTTGGGCCEEECCSS-CCCCCCGGGS
T ss_pred             ccccCCccEEECCCC-CCccchHHhh
Confidence                28888888886 7778876654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=4.4e-21  Score=169.64  Aligned_cols=208  Identities=20%  Similarity=0.251  Sum_probs=95.6

Q ss_pred             CccCChhhhccccccEeecCCCCCcccChh-hhcCcccceeccCCCCCCCC--CchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSI--IPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~--~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +.++|..+.  ++|++|++++|.+..+|.. +.++++|++|++++|.+...  .+.. +..+++|++|++++|.+     
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i-----   90 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGV-----   90 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSE-----
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcc-----
Confidence            445554433  3555555555555555543 35555555555555544211  1232 34455555555555544     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                . ..+..+..+++|++|++++|.+.....                           ...+..+++|++|+
T Consensus        91 ----------~-~l~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~~l~~L~~L~  132 (306)
T 2z66_A           91 ----------I-TMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------------FSVFLSLRNLIYLD  132 (306)
T ss_dssp             ----------E-EEEEEEETCTTCCEEECTTSEEESSTT---------------------------TTTTTTCTTCCEEE
T ss_pred             ----------c-cChhhcCCCCCCCEEECCCCccccccc---------------------------chhhhhccCCCEEE
Confidence                      1 122234455555555555444322111                           12344455555555


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc---cCcccccCCccEEEEeccccccccccccccccccccc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD---LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG  236 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~  236 (330)
                      ++++.++...+..        ...+++|++|++++|.+..   +..+..+++|++|+++++.+.++.+            
T Consensus       133 l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------  192 (306)
T 2z66_A          133 ISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------------  192 (306)
T ss_dssp             CTTSCCEECSTTT--------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------------
T ss_pred             CCCCcCCccchhh--------cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH------------
Confidence            5544444332211        1344555555555553332   2234555555555555555554433            


Q ss_pred             CccccCcccceeecccccccccccCC-CCCCCCccEEEEccC
Q 037371          237 SEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHC  277 (330)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c  277 (330)
                      ..+..+++|+.|+++++ .+..+... ...+++|+.|+++++
T Consensus       193 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence            13444555555555554 23332221 222455555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=1.3e-20  Score=165.06  Aligned_cols=209  Identities=18%  Similarity=0.215  Sum_probs=113.5

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCC-CCCccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRG-RWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~-~~~~~~   79 (330)
                      ++.++|..+.  ++|++|++++|.+..+|. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|. +     
T Consensus        22 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l-----   93 (285)
T 1ozn_A           22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQL-----   93 (285)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTC-----
T ss_pred             CcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCc-----
Confidence            3555665442  466777777776665553 4666777777777766553332333 6667777777777665 4     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                ....+..+..+++|++|++++|.+.                            ......+..+++|++|+
T Consensus        94 ----------~~~~~~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           94 ----------RSVDPATFHGLGRLHTLHLDRCGLQ----------------------------ELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             ----------CCCCTTTTTTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCTTCCEEE
T ss_pred             ----------cccCHHHhcCCcCCCEEECCCCcCC----------------------------EECHhHhhCCcCCCEEE
Confidence                      2222444556666666666655432                            22223345556666666


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      ++.|.++.+....        ...+++|++|++++|.+..++  .+..+++|+.|++++|.+.++.+            .
T Consensus       136 l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------~  195 (285)
T 1ozn_A          136 LQDNALQALPDDT--------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP------------H  195 (285)
T ss_dssp             CCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------------T
T ss_pred             CCCCcccccCHhH--------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH------------h
Confidence            6655555432221        234556666666666444433  25556666666666655555533            1


Q ss_pred             ccccCcccceeecccccccccccCC-CCCCCCccEEEEccC
Q 037371          238 EHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHC  277 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c  277 (330)
                      .+..+++|+.|+++++ .+..++.. ...+++|+.|++.++
T Consensus       196 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence            4455566666666655 33333322 223556666665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=7.4e-21  Score=183.62  Aligned_cols=249  Identities=16%  Similarity=0.152  Sum_probs=125.8

Q ss_pred             CCccCChh-hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      .+..+|.. |+++++|++|++++|.+..+|..+..+++|++|++++|.+.+..|.. ++++++|++|++++|.+      
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~------  337 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTK------  337 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSS------
T ss_pred             ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCc------
Confidence            34555543 77777777777777777777777777777777777777664333433 66777777777777665      


Q ss_pred             ccCccccCCchhh-HHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           81 EEGSVLCDDAEPL-MKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        81 ~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                               .... ...+..+++|++|++++|..............+.+|++|++ ++..   .......+..+++|+.|
T Consensus       338 ---------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          338 ---------RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP---LSLKTEAFKECPQLELL  405 (606)
T ss_dssp             ---------CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC---EEECTTTTTTCTTCSEE
T ss_pred             ---------ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC---CcCCHHHhcCCccCCeE
Confidence                     1111 12355566666666665554332211112223344555555 2211   22223344455555555


Q ss_pred             EEEccCcceeeeCc-ccc----------------cCccCCCCCCCccEEEEecccccc-----cCcccccCCccEEEEec
Q 037371          159 ELGSSKLEEMKIDS-TEE----------------VKKLFRNGFRSLNTVVLRSCRGKD-----LTWLVFVQNLKQLNMQG  216 (330)
Q Consensus       159 ~l~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~L~~L~L~~~~~~~-----l~~l~~l~~L~~L~L~~  216 (330)
                      +++++.++...+.. +..                ........+++|++|++++|.+..     ...+..+++|++|++++
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~  485 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF  485 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence            55544433221110 000                000112344555555555553322     12344555555555555


Q ss_pred             ccccccccccccccccccccCccccCcccceeeccccccccccc-CCCCCCCCccEEEEccCCCCCCCC
Q 037371          217 FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVY-PNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                      |.+.++.+            ..+..+++|+.|+++++ .+.... .....+++| .|++++| ++..+|
T Consensus       486 n~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~  539 (606)
T 3t6q_A          486 CDLSSIDQ------------HAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIIL  539 (606)
T ss_dssp             SCCCEECT------------TTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCC
T ss_pred             CccCccCh------------hhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccC
Confidence            55555433            14555666666666666 333322 223335566 6666664 444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=1.3e-20  Score=181.98  Aligned_cols=243  Identities=16%  Similarity=0.192  Sum_probs=168.3

Q ss_pred             CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |.+.++|..++++++|++|++++|.+..+ |..+..+++|++|++++|.+.+.+|...+.++++|++|++++|.+ ..  
T Consensus       288 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~--  364 (606)
T 3t6q_A          288 THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI-ET--  364 (606)
T ss_dssp             SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CE--
T ss_pred             CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc-cc--
Confidence            56788999999999999999999999865 557899999999999999887777776688999999999999887 22  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHH--hh---------------------ccccccCceEEEEE-E
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQK--FL---------------------KYPKLVSITQSVWV-E  135 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~---------------------~~~~~~~~L~~L~l-~  135 (330)
                                ....+..+..+++|++|++++|.......  +.                     .....+.+|++|++ +
T Consensus       365 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          365 ----------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             ----------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             ----------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence                      11114456666677777666654332110  00                     00112233444444 2


Q ss_pred             eCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEE
Q 037371          136 CGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLN  213 (330)
Q Consensus       136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~  213 (330)
                      +.   ........+..+++|++|++++|.++.....     .......+++|++|++++|.+...  ..++++++|+.|+
T Consensus       435 n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  506 (606)
T 3t6q_A          435 SL---LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD  506 (606)
T ss_dssp             CC---CBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             Cc---cCCcCHHHHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence            21   1222334456667777777776555432111     111246789999999999976664  3688999999999


Q ss_pred             EecccccccccccccccccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCC
Q 037371          214 MQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCR  278 (330)
Q Consensus       214 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~  278 (330)
                      |++|.+..+.+.            .+..+++| .|+++++ .+..+... ...+++|+.|++.+++
T Consensus       507 Ls~N~l~~~~~~------------~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          507 LSHNRLTSSSIE------------ALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CCSSCCCGGGGG------------GGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             CCCCccCcCChh------------HhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence            999999888662            67788999 9999998 55554433 2347899999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=5.9e-21  Score=169.81  Aligned_cols=219  Identities=15%  Similarity=0.122  Sum_probs=170.3

Q ss_pred             hhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371           10 ISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      +..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+ .++  +..+++|++|++++|.+ +.           
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l-~~-----------   94 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYV-QE-----------   94 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCSSEE-EE-----------
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcCCcc-cc-----------
Confidence            456679999999999999776 578999999999999997743 444  88999999999999887 21           


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCccee
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEM  168 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  168 (330)
                              +...++|++|++++|.+.....     ....+|+.|++....  ........+..+++|++|++++|.++.+
T Consensus        95 --------l~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           95 --------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             --------EEECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             --------ccCCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCCCCcc
Confidence                    2244899999999887654321     224568888883222  3445555678899999999998888876


Q ss_pred             eeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCccccee
Q 037371          169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYL  248 (330)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  248 (330)
                      .+...       ...+++|++|++++|.++.++....+++|++|++++|.+..+++             .+..+++|+.|
T Consensus       160 ~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------------~~~~l~~L~~L  219 (317)
T 3o53_A          160 NFAEL-------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-------------EFQSAAGVTWI  219 (317)
T ss_dssp             EGGGG-------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-------------GGGGGTTCSEE
T ss_pred             cHHHH-------hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh-------------hhcccCcccEE
Confidence            54433       23578899999999988777766679999999999999988865             56678999999


Q ss_pred             ecccccccccccCCCCCCCCccEEEEccCCC
Q 037371          249 TMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQ  279 (330)
Q Consensus       249 ~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~  279 (330)
                      +++++ .++.++.....+++|+.|++.+++-
T Consensus       220 ~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          220 SLRNN-KLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             ECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             ECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence            99998 7777777766789999999998643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=2.7e-20  Score=167.42  Aligned_cols=228  Identities=18%  Similarity=0.217  Sum_probs=162.5

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+..+| .+.++++|++|++++|.+..+|. +..+++|++|++++|.....++.  +..+++|++|++++|.+ ..   
T Consensus        98 n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~-~~---  169 (347)
T 4fmz_A           98 NKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV-KD---  169 (347)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCC-CC---
T ss_pred             CcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCc-CC---
Confidence            3456665 68899999999999999888876 88899999999998876666555  78888888888888877 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhcc------------------ccccCceEEEEE-EeCCCCC
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY------------------PKLVSITQSVWV-ECGTYTR  141 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------~~~~~~L~~L~l-~~~~~~~  141 (330)
                                 ..  .+..+++|+.|++++|....+..+...                  ...+.+|++|++ ++..   
T Consensus       170 -----------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l---  233 (347)
T 4fmz_A          170 -----------VT--PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI---  233 (347)
T ss_dssp             -----------CG--GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---
T ss_pred             -----------ch--hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc---
Confidence                       11  155666666666666554333221110                  122344555655 3222   


Q ss_pred             CCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccc
Q 037371          142 PPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEE  221 (330)
Q Consensus       142 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  221 (330)
                      ...  ..+..+++|+.|+++++.++.+          .....+++|++|++++|.+..++.+..+++|+.|++++|.+.+
T Consensus       234 ~~~--~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          234 TDL--SPLANLSQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCG
T ss_pred             CCC--cchhcCCCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence            111  1266677777777776665543          1246789999999999988888889999999999999999887


Q ss_pred             cccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371          222 IISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                      ..+.            .+..+++|++|++++|. +..+.. ...+++|+.|++++|+
T Consensus       302 ~~~~------------~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          302 EDME------------VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGHH------------HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             cChh------------HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence            7652            67789999999999994 665544 4569999999999974

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.1e-20  Score=185.85  Aligned_cols=258  Identities=13%  Similarity=0.106  Sum_probs=150.1

Q ss_pred             CChhhhccc-------cccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCC
Q 037371            6 LPSGISNLV-------SLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWS   76 (330)
Q Consensus         6 lp~~l~~l~-------~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~   76 (330)
                      +|..+++++       +|++|++++|.+..+|.  .++++++|+.|++++|.+. .+| . ++.+++|++|++++|.+  
T Consensus       533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l--  607 (876)
T 4ecn_A          533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQI--  607 (876)
T ss_dssp             HHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCC--
T ss_pred             chHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCcc--
Confidence            555555554       66666666666666665  5666666666666666553 555 2 66666666666666555  


Q ss_pred             ccccccCccccCCchhhHHHhccCcC-cceeeEEEechhhHHHhhcc--------------------------cc--ccC
Q 037371           77 VLEEEEGSVLCDDAEPLMKELLGLKH-LNVLSWSFRSSLAVQKFLKY--------------------------PK--LVS  127 (330)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~--------------------------~~--~~~  127 (330)
                                   . .++..+..+++ |+.|++++|.+..++.....                          ..  ...
T Consensus       608 -------------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          608 -------------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             -------------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             -------------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence                         2 23334555555 55555555543322211100                          00  012


Q ss_pred             ceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-ccc--
Q 037371          128 ITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLV--  204 (330)
Q Consensus       128 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~--  204 (330)
                      +|+.|++..+.  ........+..+++|+.|++++|.++.+....... .......+++|++|+|++|.+..++ .+.  
T Consensus       674 ~L~~L~Ls~N~--L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~  750 (876)
T 4ecn_A          674 NASTVTLSYNE--IQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT  750 (876)
T ss_dssp             CEEEEECCSSC--CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred             CcCEEEccCCc--CCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-ccccccccCCccEEECCCCCCccchHHhhhc
Confidence            35555551111  12222222346677778887776766443322200 0000122348999999999776665 454  


Q ss_pred             ccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc------ccccccCCCCCCCCccEEEEccCC
Q 037371          205 FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT------NVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       205 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                      .+++|+.|+|++|.+..++.             .+..+++|+.|+++++.      -...++.....+++|+.|++++| 
T Consensus       751 ~l~~L~~L~Ls~N~L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-  816 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSSFPT-------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-  816 (876)
T ss_dssp             TCTTCCEEECCSSCCSSCCC-------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred             cCCCcCEEEeCCCCCCccch-------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-
Confidence            79999999999998888643             66789999999998743      23445555566899999999997 


Q ss_pred             CCCCCCCCCcCCCCCceEEecc
Q 037371          279 QLKKLPLNSSSAKGRRVVIEGT  300 (330)
Q Consensus       279 ~L~~lp~~~~~~~~~~~~i~~~  300 (330)
                      .+..+|..... .++...+..+
T Consensus       817 ~L~~Ip~~l~~-~L~~LdLs~N  837 (876)
T 4ecn_A          817 DIRKVDEKLTP-QLYILDIADN  837 (876)
T ss_dssp             CCCBCCSCCCS-SSCEEECCSC
T ss_pred             CCCccCHhhcC-CCCEEECCCC
Confidence            55889887552 3334444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=8.5e-21  Score=169.84  Aligned_cols=230  Identities=18%  Similarity=0.209  Sum_probs=166.5

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+|. .|+++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|.. +.  ++|++|++++|.+    
T Consensus        64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~-~~--~~L~~L~l~~n~i----  135 (332)
T 2ft3_A           64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPN-LP--SSLVELRIHDNRI----  135 (332)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSS-CC--TTCCEEECCSSCC----
T ss_pred             CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcc-cc--ccCCEEECCCCcc----
Confidence            45677754 799999999999999999966 66889999999999999977 577775 33  8999999999988    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQE  157 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~  157 (330)
                                 .......+..+++|+.|++++|............... .|+.|++ +..-   .... ..+  .++|++
T Consensus       136 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l---~~l~-~~~--~~~L~~  197 (332)
T 2ft3_A          136 -----------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL---TGIP-KDL--PETLNE  197 (332)
T ss_dssp             -----------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC---SSCC-SSS--CSSCSC
T ss_pred             -----------CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC---CccC-ccc--cCCCCE
Confidence                       3234455788999999999998765322222222222 5666666 3222   2211 111  268888


Q ss_pred             EEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccc
Q 037371          158 LELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEII  235 (330)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  235 (330)
                      |+++.|.++.+.+..        ...+++|++|++++|.+..++  ++..+++|+.|++++|.+..++.           
T Consensus       198 L~l~~n~i~~~~~~~--------l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-----------  258 (332)
T 2ft3_A          198 LHLDHNKIQAIELED--------LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-----------  258 (332)
T ss_dssp             CBCCSSCCCCCCTTS--------STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-----------
T ss_pred             EECCCCcCCccCHHH--------hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-----------
Confidence            888887777654333        356788999999988666654  57888999999999888887754           


Q ss_pred             cCccccCcccceeecccccccccccCCCC-------CCCCccEEEEccCC
Q 037371          236 GSEHNIFARLEYLTMWRGTNVKSVYPNPL-------PFPKLKKIQVFHCR  278 (330)
Q Consensus       236 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~i~~c~  278 (330)
                        .+..+++|++|+++++ .++.++....       .+++|+.|.+.+++
T Consensus       259 --~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          259 --GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             --TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             --hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence              5677888999999887 5666554322       15678889888875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=5.6e-21  Score=169.68  Aligned_cols=231  Identities=13%  Similarity=0.138  Sum_probs=180.0

Q ss_pred             ccccEeecCCCCCc---ccChhhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           14 VSLHHLDLSRTNIT---GLPQELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        14 ~~L~~L~L~~~~~~---~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      .++++|+++++.+.   .+|..+.++++|++|++++ |.+.+.+|.. ++++++|++|++++|.+               
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l---------------  113 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNV---------------  113 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECC---------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCee---------------
Confidence            57999999999988   5899999999999999995 8787888887 99999999999999998               


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccccc-CccEEEEEccCccee
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYME-NLQELELGSSKLEEM  168 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~  168 (330)
                      ....+..+.++++|++|++++|.+...  +......+.+|++|++..+.  ........+..++ +|+.|+++.|.++..
T Consensus       114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          114 SGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             CCcCCHHHhCCCCCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence            446777899999999999999876521  11222346678999983222  2434556788887 999999998887755


Q ss_pred             eeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccccccccccCccccCcccc
Q 037371          169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLE  246 (330)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  246 (330)
                      .+..+        ..+. |++|++++|.+..  ...+..+++|+.|++++|.+....+             .+..+++|+
T Consensus       190 ~~~~~--------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~l~~L~  247 (313)
T 1ogq_A          190 IPPTF--------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------KVGLSKNLN  247 (313)
T ss_dssp             CCGGG--------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------------GCCCCTTCC
T ss_pred             CChHH--------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-------------cccccCCCC
Confidence            44333        3444 9999999996654  3467899999999999998876655             566789999


Q ss_pred             eeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371          247 YLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       247 ~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                      +|+++++.-...++.....+++|+.|+++++.--..+|..
T Consensus       248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9999998433355555666999999999997443366665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=1.6e-20  Score=168.06  Aligned_cols=239  Identities=18%  Similarity=0.155  Sum_probs=182.2

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +++.++|..+.  ++|++|++++|.+..++ ..+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+ +.  
T Consensus        43 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l-~~--  116 (332)
T 2ft3_A           43 LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHL-VE--  116 (332)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCC-CS--
T ss_pred             CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcC-Cc--
Confidence            45778998775  69999999999999775 47899999999999999885544654 99999999999999988 22  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                   ++..+.  ++|++|++++|.+..+..  .....+.+|+.|++..............+..+ +|+.|+
T Consensus       117 -------------l~~~~~--~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          117 -------------IPPNLP--SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR  178 (332)
T ss_dssp             -------------CCSSCC--TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred             -------------cCcccc--ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence                         222222  789999999987654321  12234667899998322210112334456666 999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      ++.+.++.+..           .-+++|++|++++|.+..++  .+..+++|+.|++++|.+..+.+            .
T Consensus       179 l~~n~l~~l~~-----------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~------------~  235 (332)
T 2ft3_A          179 ISEAKLTGIPK-----------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN------------G  235 (332)
T ss_dssp             CCSSBCSSCCS-----------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT------------T
T ss_pred             CcCCCCCccCc-----------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh------------h
Confidence            99888775432           22378999999999776654  68899999999999999988865            2


Q ss_pred             ccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371          238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                      .+..+++|+.|+++++ .+..++.....+++|+.|+++++ .++.+|....
T Consensus       236 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~  284 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDF  284 (332)
T ss_dssp             GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred             HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHc
Confidence            6778999999999998 77788777777999999999995 7888876544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=2.2e-21  Score=192.38  Aligned_cols=250  Identities=17%  Similarity=0.094  Sum_probs=114.4

Q ss_pred             cCChhhhcc-ccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371            5 KLPSGISNL-VSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus         5 ~lp~~l~~l-~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      .+|..+... ++|++|++++|.+. .+|..++.+++|++|++++|.+.+.+|..++.++++|++|++++|.+        
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l--------  355 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF--------  355 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE--------
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc--------
Confidence            455554443 66666666666655 55556666666666666666554455554456666666666666555        


Q ss_pred             CccccCCchhhHHHhccCc-CcceeeEEEechhhH--HHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           83 GSVLCDDAEPLMKELLGLK-HLNVLSWSFRSSLAV--QKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                             .+..+..+.+++ +|+.|++++|.....  ..+.  ......|++|++ ++..   .......+..+++|+.|
T Consensus       356 -------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~--~~~~~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          356 -------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLC--QNPKNTLQELYLQNNGF---TGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             -------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT--CSTTCCCCEEECCSSEE---EEECCGGGGGCTTCCEE
T ss_pred             -------CccccHHHHhhhcCCcEEEccCCCcCCCcChhhh--hcccCCccEEECCCCcc---ccccCHHHhcCCCCCEE
Confidence                   223333444443 555555554433210  0000  001233555555 2211   22233345555666666


Q ss_pred             EEEccCcceeeeCcccc----------------cCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEeccccc
Q 037371          159 ELGSSKLEEMKIDSTEE----------------VKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTME  220 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~  220 (330)
                      +++.|.++...+.....                ..+.....+++|++|++++|.+..  +.++.++++|++|+|++|.+.
T Consensus       424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence            66644444322221100                000011233444444444443321  123444444444444444444


Q ss_pred             ccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371          221 EIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                      +..+            ..++.+++|++|+++++.-...++.....+++|+.|++++|+-...+|..
T Consensus       504 ~~~p------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          504 GEIP------------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             SCCC------------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             CcCC------------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence            3322            13444555555555555333334433444555555555555433344443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=1.5e-20  Score=182.55  Aligned_cols=248  Identities=13%  Similarity=0.121  Sum_probs=141.7

Q ss_pred             CChhhhcc------ccccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCc
Q 037371            6 LPSGISNL------VSLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSV   77 (330)
Q Consensus         6 lp~~l~~l------~~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~   77 (330)
                      +|..++++      ++|++|++++|.+..+|.  .++.+++|++|++++|.+.+.+| . ++.+++|++|++++|.+   
T Consensus       291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l---  365 (636)
T 4eco_A          291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQI---  365 (636)
T ss_dssp             HHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEE---
T ss_pred             chHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCcc---
Confidence            55555554      666666666666666665  56666666666666665544555 2 55566666666666554   


Q ss_pred             cccccCccccCCchhhHHHhccCcC-cceeeEEEechhhHHHhhc-----------------------ccc-------cc
Q 037371           78 LEEEEGSVLCDDAEPLMKELLGLKH-LNVLSWSFRSSLAVQKFLK-----------------------YPK-------LV  126 (330)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-----------------------~~~-------~~  126 (330)
                                  . .++..+..+++ |++|++++|.+..++....                       ...       ..
T Consensus       366 ------------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          366 ------------T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             ------------E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred             ------------c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence                        2 23334455555 5555555554332221100                       000       12


Q ss_pred             CceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-ccc-
Q 037371          127 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLV-  204 (330)
Q Consensus       127 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~-  204 (330)
                      .+|+.|++.-..  ........+..+++|++|++++|.++.+....... .......+++|++|++++|.+..++ .+. 
T Consensus       433 ~~L~~L~Ls~N~--l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          433 INVSSINLSNNQ--ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCEEEEECCSSC--CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-TTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCCEEECcCCc--cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-ccccccccCCccEEECcCCcCCccChhhhh
Confidence            235555551111  12222222445667777777766666443322200 0000112238888999888666655 344 


Q ss_pred             -ccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc------ccccccCCCCCCCCccEEEEccC
Q 037371          205 -FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT------NVKSVYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       205 -~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~L~~L~i~~c  277 (330)
                       .+++|+.|+|++|.+..++.             .+..+++|+.|+++++.      -...++.....+++|++|++++|
T Consensus       510 ~~l~~L~~L~Ls~N~l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             ccCCCcCEEECCCCCCCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence             78899999999888887643             66678999999996532      23445555566899999999996


Q ss_pred             CCCCCCCCCCc
Q 037371          278 RQLKKLPLNSS  288 (330)
Q Consensus       278 ~~L~~lp~~~~  288 (330)
                       +++.+|....
T Consensus       577 -~l~~ip~~~~  586 (636)
T 4eco_A          577 -DIRKVNEKIT  586 (636)
T ss_dssp             -CCCBCCSCCC
T ss_pred             -cCCccCHhHh
Confidence             5588887654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=1.9e-20  Score=180.69  Aligned_cols=236  Identities=17%  Similarity=0.120  Sum_probs=148.8

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      .+..+++|++|++++|.+..+| .+ .+++|++|++++|...+..  . +..+++|++|++++|.+ +.           
T Consensus       302 ~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l-~~-----------  364 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRNAL-SF-----------  364 (606)
T ss_dssp             CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSSCE-EE-----------
T ss_pred             hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--h-hccCCCCCEEECcCCcc-CC-----------
Confidence            3444444444444444444444 22 4444444444444332222  1 44555555555555554 11           


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEEccCcc
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELGSSKLE  166 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  166 (330)
                       ....+..+..+++|+.|++++|....+.   .....+.+|+.|++ ++..   ..... ..+..+++|+.|+++++.++
T Consensus       365 -~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          365 -SGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTL---KRVTEFSAFLSLEKLLYLDISYTNTK  437 (606)
T ss_dssp             -EEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEE---ESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             -CcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCcc---CCccChhhhhccccCCEEECcCCCCC
Confidence             1113566677777777777776644322   23334566777777 3322   22222 45778888888888877766


Q ss_pred             eeeeCcccccCccCCCCCCCccEEEEecccccc---cCcccccCCccEEEEecccccccccccccccccccccCccccCc
Q 037371          167 EMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD---LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFA  243 (330)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
                      ...+..        ...+++|++|++++|.+..   +..++.+++|+.|++++|.+.++.+            ..+..++
T Consensus       438 ~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~  497 (606)
T 3vq2_A          438 IDFDGI--------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW------------GVFDTLH  497 (606)
T ss_dssp             ECCTTT--------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------------TTTTTCT
T ss_pred             ccchhh--------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh------------hhhcccc
Confidence            543333        3678899999999996654   3467889999999999998888766            2678899


Q ss_pred             ccceeecccccccccc-cCCCCCCCCccEEEEccCCCCCCCCCCCcCC
Q 037371          244 RLEYLTMWRGTNVKSV-YPNPLPFPKLKKIQVFHCRQLKKLPLNSSSA  290 (330)
Q Consensus       244 ~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~  290 (330)
                      +|+.|+++++ .+..+ +.....+++|++|++++| +++.+|......
T Consensus       498 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l  543 (606)
T 3vq2_A          498 RLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHF  543 (606)
T ss_dssp             TCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGS
T ss_pred             cCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhh
Confidence            9999999999 55554 444566899999999997 588888775444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=4.4e-20  Score=177.99  Aligned_cols=233  Identities=16%  Similarity=0.168  Sum_probs=165.6

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+|. .|+.+++|++|+|++|.+..+|. .++.+++|++|++++|.+ ..+|..+++++++|++|++++|.+    
T Consensus        85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l----  159 (597)
T 3oja_B           85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL----  159 (597)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC----
T ss_pred             CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcC----
Confidence            34566664 68888888888888888886655 467888888888888866 466665568888888888888877    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH--Hhhcc------------cc--------------------
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--KFLKY------------PK--------------------  124 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~------------~~--------------------  124 (330)
                                 ....+..+..+++|++|++++|.+....  .+...            ..                    
T Consensus       160 -----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~  228 (597)
T 3oja_B          160 -----------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  228 (597)
T ss_dssp             -----------CBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred             -----------CCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence                       3344555677777777777777654321  00000            00                    


Q ss_pred             -ccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-
Q 037371          125 -LVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-  201 (330)
Q Consensus       125 -~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-  201 (330)
                       ....|+.|++ ++..   ..  ...+..+++|+.|++++|.++...+..+        ..+++|++|+|++|.+..++ 
T Consensus       229 ~~~~~L~~L~L~~n~l---~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~l~~  295 (597)
T 3oja_B          229 PVNVELTILKLQHNNL---TD--TAWLLNYPGLVEVDLSYNELEKIMYHPF--------VKMQRLERLYISNNRLVALNL  295 (597)
T ss_dssp             SCCSCCCEEECCSSCC---CC--CGGGGGCTTCSEEECCSSCCCEEESGGG--------TTCSSCCEEECTTSCCCEEEC
T ss_pred             ccCCCCCEEECCCCCC---CC--ChhhccCCCCCEEECCCCccCCCCHHHh--------cCccCCCEEECCCCCCCCCCc
Confidence             0112444444 2111   11  2457788999999999888887655443        67899999999999777655 


Q ss_pred             cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371          202 WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       202 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                      .+..+++|+.|+|++|.+..++.             .+..+++|++|+++++ .+..++  ...+++|+.|++++++
T Consensus       296 ~~~~l~~L~~L~Ls~N~l~~i~~-------------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          296 YGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred             ccccCCCCcEEECCCCCCCccCc-------------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence            35669999999999999887755             5678999999999998 465543  5568999999999865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=2.5e-20  Score=175.32  Aligned_cols=225  Identities=15%  Similarity=0.139  Sum_probs=177.8

Q ss_pred             cCChhhhccc----cccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            5 KLPSGISNLV----SLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         5 ~lp~~l~~l~----~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      .+|..+..+.    +|++|+|++|.+..++ ..+..+++|++|++++|.+.+. ++  ++.+++|++|++++|.+ +.  
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l-~~--   94 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYV-QE--   94 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEE-EE--
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcC-CC--
Confidence            4566555554    8999999999999765 5889999999999999987443 44  88999999999999887 21  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                       +...++|+.|++++|.+.....     ....+|+.|++..+.  ........+..+++|+.|+
T Consensus        95 -----------------l~~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~  150 (487)
T 3oja_A           95 -----------------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLD  150 (487)
T ss_dssp             -----------------EEECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEE
T ss_pred             -----------------CCCCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEE
Confidence                             2234899999999987654322     224668888883322  3555556788999999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCcc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH  239 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  239 (330)
                      +++|.++...+..+       ...+++|++|+|++|.+..++....+++|+.|+|++|.+..+++             .+
T Consensus       151 Ls~N~l~~~~~~~l-------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~  210 (487)
T 3oja_A          151 LKLNEIDTVNFAEL-------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-------------EF  210 (487)
T ss_dssp             CTTSCCCEEEGGGG-------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-------------GG
T ss_pred             CCCCCCCCcChHHH-------hhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH-------------hH
Confidence            99888887655443       13578999999999988877777789999999999999998866             57


Q ss_pred             ccCcccceeecccccccccccCCCCCCCCccEEEEccCCCC
Q 037371          240 NIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQL  280 (330)
Q Consensus       240 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L  280 (330)
                      ..+++|+.|+++++ .+..++.....+++|+.|++.+++-.
T Consensus       211 ~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence            78899999999998 67777777777899999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=171.78  Aligned_cols=94  Identities=28%  Similarity=0.276  Sum_probs=61.4

Q ss_pred             CCCccCC-hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLP-SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+| ..|+++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|..   .+++|++|++++|.+    
T Consensus        31 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~---~l~~L~~L~L~~N~l----  102 (520)
T 2z7x_B           31 NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISCH---PTVNLKHLDLSFNAF----  102 (520)
T ss_dssp             SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-CEEECC---CCCCCSEEECCSSCC----
T ss_pred             CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-eecCcc---ccCCccEEeccCCcc----
Confidence            3455666 3577777777777777777755 55677777777777777766 456652   677777777777766    


Q ss_pred             ccccCccccCCch-hhHHHhccCcCcceeeEEEech
Q 037371           79 EEEEGSVLCDDAE-PLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        79 ~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                                 .. ..+..++++++|++|++++|.+
T Consensus       103 -----------~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B          103 -----------DALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             -----------SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             -----------ccccchhhhccCCcceEEEecCccc
Confidence                       21 2345566666666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=1.1e-19  Score=173.38  Aligned_cols=72  Identities=25%  Similarity=0.420  Sum_probs=50.4

Q ss_pred             CCCccCC-hhhhccccccEeecCCCCCcccChh-hhcCcccceeccCCCCCCC-CCchhhhCCCCCCcEEEeccCC
Q 037371            1 LSLSKLP-SGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLS-IIPPQLISGFSKLEVLRLLSRG   73 (330)
Q Consensus         1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~   73 (330)
                      |.+..+| ..|+++++|++|++++|.+..+|.. ++.+++|++|++++|.+.+ ..|.. ++++++|++|++++|.
T Consensus        60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESS
T ss_pred             CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-hhccCCccEEECCCCc
Confidence            3455555 4578888888888888887766654 7778888888888876643 23443 6777777777777776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=1.3e-19  Score=168.94  Aligned_cols=186  Identities=18%  Similarity=0.193  Sum_probs=96.3

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      .+..+| .++.+++|++|++++|.++.+|  ++.+++|++|++++|.+.+ ++   ++++++|++|++++|.+       
T Consensus        53 ~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l-------  118 (457)
T 3bz5_A           53 SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKL-------  118 (457)
T ss_dssp             CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCC-------
T ss_pred             CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcC-------
Confidence            344444 4555556666666665555554  5555566666665555422 22   45566666666666555       


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEE
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                              .. .  .++.+++|++|++++|.+..+.     ...+..|++|++ ++..  ...   ..+..+++|+.|++
T Consensus       119 --------~~-l--~~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~--~~~---~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          119 --------TK-L--DVSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKK--ITK---LDVTPQTQLTTLDC  177 (457)
T ss_dssp             --------SC-C--CCTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSC--CCC---CCCTTCTTCCEEEC
T ss_pred             --------Ce-e--cCCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCc--ccc---cccccCCcCCEEEC
Confidence                    11 1  1555666666666655544321     122344555555 3211  011   13445556666666


Q ss_pred             EccCcceeeeCcccc----------cCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc
Q 037371          161 GSSKLEEMKIDSTEE----------VKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  223 (330)
                      +.|.++.+.......          -...+...+++|++|++++|.+..++ ++.+++|+.|++++|.+.+++
T Consensus       178 s~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          178 SFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC
T ss_pred             CCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC
Confidence            655554432110000          00112345677777777777666655 667777777777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=2.1e-19  Score=153.16  Aligned_cols=206  Identities=14%  Similarity=0.141  Sum_probs=133.5

Q ss_pred             CccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc-CCCCCcccc
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS-RGRWSVLEE   80 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~-~~~~~~~~~   80 (330)
                      +.++|. +.  .+|++|++++|+++.+|. .+..+++|++|++++|...+.++..++.++++|++|++++ |.+      
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l------   93 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL------   93 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC------
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe------
Confidence            566776 44  378888888888887766 6778888888888888633666654578888888888887 777      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCcc---E
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQ---E  157 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---~  157 (330)
                               ....+..+..+++|+.|++++|.+..++                              .+..+++|+   .
T Consensus        94 ---------~~i~~~~f~~l~~L~~L~l~~n~l~~lp------------------------------~~~~l~~L~~L~~  134 (239)
T 2xwt_C           94 ---------TYIDPDALKELPLLKFLGIFNTGLKMFP------------------------------DLTKVYSTDIFFI  134 (239)
T ss_dssp             ---------CEECTTSEECCTTCCEEEEEEECCCSCC------------------------------CCTTCCBCCSEEE
T ss_pred             ---------eEcCHHHhCCCCCCCEEeCCCCCCcccc------------------------------ccccccccccccE
Confidence                     2233445677788888888877533211                              133444444   7


Q ss_pred             EEEEcc-CcceeeeCcccccCccCCCCCCCcc-EEEEecccccccCc--ccccCCccEEEEecc-ccccccccccccccc
Q 037371          158 LELGSS-KLEEMKIDSTEEVKKLFRNGFRSLN-TVVLRSCRGKDLTW--LVFVQNLKQLNMQGF-TMEEIISVDKLSDIS  232 (330)
Q Consensus       158 L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~-~l~~~~~~~~~~~~~  232 (330)
                      |+++.| .++.+....+        ..+++|+ +|++++|.+..++.  +.. ++|+.|++++| .++.+++        
T Consensus       135 L~l~~N~~l~~i~~~~~--------~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~--------  197 (239)
T 2xwt_C          135 LEITDNPYMTSIPVNAF--------QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK--------  197 (239)
T ss_dssp             EEEESCTTCCEECTTTT--------TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT--------
T ss_pred             EECCCCcchhhcCcccc--------cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH--------
Confidence            777765 6665543332        4567777 77777775555442  333 67777777776 3776654        


Q ss_pred             ccccCccccC-cccceeecccccccccccCCCCCCCCccEEEEccCCCC
Q 037371          233 EIIGSEHNIF-ARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQL  280 (330)
Q Consensus       233 ~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L  280 (330)
                          ..+..+ ++|+.|+++++ .++.++..  .|++|+.|.+.+++.|
T Consensus       198 ----~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          198 ----DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL  239 (239)
T ss_dssp             ----TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred             ----HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence                145566 77777777775 55554433  5777777777776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=3.9e-19  Score=170.16  Aligned_cols=96  Identities=30%  Similarity=0.298  Sum_probs=67.1

Q ss_pred             CCCccCC-hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLP-SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+| ..|+++++|++|++++|.++.+ |..+..+++|++|++++|.+ ..+|..   .+++|++|++++|.+ +. 
T Consensus        62 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~---~l~~L~~L~Ls~N~l-~~-  135 (562)
T 3a79_B           62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCC---PMASLRHLDLSFNDF-DV-  135 (562)
T ss_dssp             SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEECSC---CCTTCSEEECCSSCC-SB-
T ss_pred             CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-CccCcc---ccccCCEEECCCCCc-cc-
Confidence            4566676 4688888888888888888865 55678888888888888866 466653   677888888888777 11 


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                                  ...+..++++++|++|++++|.+.
T Consensus       136 ------------l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          136 ------------LPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             ------------CCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             ------------cCchHhhcccCcccEEecCCCccc
Confidence                        022355666777777777766543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=2e-19  Score=168.37  Aligned_cols=249  Identities=19%  Similarity=0.257  Sum_probs=140.4

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+..+|. ++++++|++|++++|.+..++. +.++++|++|++++|.+ ..++.  ++++++|++|++++|.+ ..   
T Consensus        78 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~l~~n~l-~~---  148 (466)
T 1o6v_A           78 NQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDP--LKNLTNLNRLELSSNTI-SD---  148 (466)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCSEEEEEEEEE-CC---
T ss_pred             CccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC-CCChH--HcCCCCCCEEECCCCcc-CC---
Confidence            45677776 9999999999999999998876 89999999999999976 55665  88999999999999877 21   


Q ss_pred             ccCccccCC--------chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcccccccc
Q 037371           81 EEGSVLCDD--------AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAY  151 (330)
Q Consensus        81 ~~~~~~~~~--------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~  151 (330)
                      ++.-.....        .......+.++++|+.|++++|....+..+    ..+.+|++|++ ++..   ...  ..+..
T Consensus       149 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l---~~~--~~~~~  219 (466)
T 1o6v_A          149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL----AKLTNLESLIATNNQI---SDI--TPLGI  219 (466)
T ss_dssp             CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCC---CCC--GGGGG
T ss_pred             ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhh----ccCCCCCEEEecCCcc---ccc--ccccc
Confidence            000000000        000001133444444444444433222111    12233444444 2211   111  11334


Q ss_pred             ccCccEEEEEccCcceeee------------CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccc
Q 037371          152 MENLQELELGSSKLEEMKI------------DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTM  219 (330)
Q Consensus       152 l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l  219 (330)
                      +++|+.|+++++.++.+..            .........+...+++|++|++++|.+..++.+..+++|+.|+++++.+
T Consensus       220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL  299 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc
Confidence            4445555554433332210            0000000111234455555555555444444455555555555555555


Q ss_pred             cccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371          220 EEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                      .++.              .+..+++|+.|+++++ .+..+.. ...+++|+.|++.+| ++..++
T Consensus       300 ~~~~--------------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~  347 (466)
T 1o6v_A          300 EDIS--------------PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS  347 (466)
T ss_dssp             SCCG--------------GGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred             cCch--------------hhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch
Confidence            4441              3667899999999999 4555433 446899999999997 666664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=3.5e-19  Score=165.44  Aligned_cols=231  Identities=19%  Similarity=0.270  Sum_probs=183.4

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      ....++.++.++..+|..+.  ++++.|++++|.+ ..++...+.++++|++|++++|.+               ....+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i---------------~~i~~  105 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHI---------------RTIEI  105 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCC---------------CEECG
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcC---------------CccCh
Confidence            45688888888999998665  6899999999987 455544499999999999999998               43556


Q ss_pred             HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE-ccCcceeeeCcc
Q 037371           95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG-SSKLEEMKIDST  173 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~  173 (330)
                      ..+..+++|+.|++++|.+..+..  ..+..+.+|++|++.-+.  ........+..+++|+.|+++ ++.++.+.... 
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-  180 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPN--GAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-  180 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCT--TTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-
T ss_pred             hhccCCccCCEEECCCCcCCeeCH--hHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcch-
Confidence            778899999999999997664332  223446779999983222  344445568899999999999 57777664433 


Q ss_pred             cccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371          174 EEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (330)
                             ...+++|++|++++|.+..++.+..+++|+.|+|++|.+..+.+            ..+..+++|+.|+++++
T Consensus       181 -------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          181 -------FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP------------GSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             -------TTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTC
T ss_pred             -------hhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh------------hhhccCccCCEEECCCC
Confidence                   36789999999999988888889999999999999999998866            27888999999999998


Q ss_pred             cccccccCC-CCCCCCccEEEEccCCCCCCCCCCCcC
Q 037371          254 TNVKSVYPN-PLPFPKLKKIQVFHCRQLKKLPLNSSS  289 (330)
Q Consensus       254 ~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~  289 (330)
                       .+..+... ...+++|+.|+++++ +++.+|.....
T Consensus       242 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  276 (440)
T 3zyj_A          242 -QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFT  276 (440)
T ss_dssp             -CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTS
T ss_pred             -ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhc
Confidence             66666554 345899999999995 88888876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.3e-19  Score=155.85  Aligned_cols=196  Identities=19%  Similarity=0.221  Sum_probs=105.9

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      ..+++++++++++.+|..+.  ++|++|++++|.+ ..++...+.++++|++|++++|.+               .....
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l---------------~~i~~   78 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKL---------------QTLPA   78 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCC-SCCCTTSSSSCTTCCEEECCSSCC---------------SCCCT
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCC-CeeCHHHhcCCCCCCEEECCCCcc---------------CeeCh
Confidence            46778888888877776543  5688888888866 444543477888888888888777               22223


Q ss_pred             HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371           95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE  174 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  174 (330)
                      ..+..+++|++|++++|.+..+                            ....+..+++|++|+++.+.++.+....  
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~----------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~--  128 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQAL----------------------------PIGVFDQLVNLAELRLDRNQLKSLPPRV--  128 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCC----------------------------CTTTTTTCSSCCEEECCSSCCCCCCTTT--
T ss_pred             hhhcCCCCCCEEECCCCcCCcC----------------------------CHhHcccccCCCEEECCCCccCeeCHHH--
Confidence            3456777888887776653221                            1122344445555555544444332221  


Q ss_pred             ccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccc
Q 037371          175 EVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWR  252 (330)
Q Consensus       175 ~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  252 (330)
                            ...+++|++|++++|.+..++  .+..+++|+.|+++++.+..+++            ..+..+++|++|++++
T Consensus       129 ------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          129 ------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE------------GAFDKLTELKTLKLDN  190 (270)
T ss_dssp             ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCEEECCS
T ss_pred             ------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh------------hHhccCCCcCEEECCC
Confidence                  134455555555555443333  24445555555555555544433            1334445555555555


Q ss_pred             ccccccccCC-CCCCCCccEEEEccC
Q 037371          253 GTNVKSVYPN-PLPFPKLKKIQVFHC  277 (330)
Q Consensus       253 ~~~l~~l~~~-~~~~~~L~~L~i~~c  277 (330)
                      + .+..++.. ...+++|+.|++.++
T Consensus       191 N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          191 N-QLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             C-cCCcCCHHHhccccCCCEEEecCC
Confidence            4 34443333 222455555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=1.6e-19  Score=157.31  Aligned_cols=208  Identities=19%  Similarity=0.207  Sum_probs=144.8

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      ++.++|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+ ..++...+.++++|++|++++|.+      
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l------   88 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI------   88 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCC------
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCcc------
Confidence            4667887765  579999999999987765 788899999999999977 455554488999999999999888      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                               ....+..+..+++|++|++++|...                            ......+..+++|++|++
T Consensus        89 ---------~~~~~~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           89 ---------QSLALGAFSGLSSLQKLVAVETNLA----------------------------SLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             ---------CEECTTTTTTCTTCCEEECTTSCCC----------------------------CSTTCCCTTCTTCCEEEC
T ss_pred             ---------CccChhhhcCCccccEEECCCCCcc----------------------------ccCchhcccCCCCCEEEC
Confidence                     3344556778888888887765422                            111223667778888888


Q ss_pred             EccCcceee-eCcccccCccCCCCCCCccEEEEecccccccC--cccccCCcc----EEEEecccccccccccccccccc
Q 037371          161 GSSKLEEMK-IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLK----QLNMQGFTMEEIISVDKLSDISE  233 (330)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~----~L~L~~~~l~~~~~~~~~~~~~~  233 (330)
                      +.|.++.+. +..        ...+++|++|++++|.+..++  .+..+++|+    .|+++++.+..+.+         
T Consensus       132 ~~n~l~~~~l~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~---------  194 (276)
T 2z62_A          132 AHNLIQSFKLPEY--------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---------  194 (276)
T ss_dssp             CSSCCCCCCCCGG--------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT---------
T ss_pred             cCCccceecCchh--------hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc---------
Confidence            877766532 222        255677888888888665543  455555555    77888877777754         


Q ss_pred             cccCccccCcccceeecccccccccccCCC-CCCCCccEEEEccC
Q 037371          234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHC  277 (330)
Q Consensus       234 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c  277 (330)
                          ......+|+.|+++++ .++.++... ..+++|+.|++.++
T Consensus       195 ----~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          195 ----GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ----TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ----cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence                2223347888888877 466665543 34778888888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=3.4e-19  Score=166.11  Aligned_cols=231  Identities=22%  Similarity=0.259  Sum_probs=182.9

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      ....++.++.+++.+|..+.  +++++|++++|.+.+..|. .+.++++|++|++++|.+               ....+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i---------------~~~~~  116 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSI---------------RQIEV  116 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCC---------------CEECT
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCcc---------------CCcCh
Confidence            45788888888999998654  6899999999988544444 499999999999999988               43456


Q ss_pred             HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE-ccCcceeeeCcc
Q 037371           95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG-SSKLEEMKIDST  173 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~  173 (330)
                      ..+..+++|+.|++++|.+..+..  .....+.+|++|++.-+.  ........+..+++|+.|+++ ++.++.+.... 
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-  191 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPS--GAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-  191 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCT--TTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-
T ss_pred             hhccCcccCCEEECCCCcCCccCh--hhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhh-
Confidence            778899999999999988664332  223446679999983222  344444568899999999999 68887765443 


Q ss_pred             cccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371          174 EEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (330)
                             ...+++|++|++++|.+..++.+..+++|+.|+|++|.+.++.+.            .+..+++|+.|+++++
T Consensus       192 -------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          192 -------FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             -------TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTS
T ss_pred             -------ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCC
Confidence                   367899999999999888888899999999999999999988662            7788999999999998


Q ss_pred             cccccccCC-CCCCCCccEEEEccCCCCCCCCCCCcC
Q 037371          254 TNVKSVYPN-PLPFPKLKKIQVFHCRQLKKLPLNSSS  289 (330)
Q Consensus       254 ~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~  289 (330)
                       .+..+... ...+++|+.|+++++ +++.+|.....
T Consensus       253 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  287 (452)
T 3zyi_A          253 -QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFT  287 (452)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSST
T ss_pred             -cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhc
Confidence             56665444 445899999999996 88888876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=162.62  Aligned_cols=241  Identities=16%  Similarity=0.116  Sum_probs=178.1

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+|. .|+++++|++|++++|.+..++ ..+..+++|++|++++|.+ ..+|..+++++++|++|++++|.+    
T Consensus        62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l----  136 (353)
T 2z80_A           62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPY----  136 (353)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTCCC----
T ss_pred             CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEECCCCCC----
Confidence            46777887 6999999999999999999764 5789999999999999987 567766689999999999999988    


Q ss_pred             ccccCccccCCchhhH-HHhccCcCcceeeEEEec-hhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCcc
Q 037371           79 EEEEGSVLCDDAEPLM-KELLGLKHLNVLSWSFRS-SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQ  156 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~  156 (330)
                                 ..... ..+..+++|++|++++|. ...+.  ......+..|++|++....  ........+..+++|+
T Consensus       137 -----------~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          137 -----------KTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             -----------SSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEE
T ss_pred             -----------cccCchhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC--cCccCHHHHhccccCC
Confidence                       21111 357889999999999984 33221  1222345679999993333  3455566788999999


Q ss_pred             EEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-----cccccCCccEEEEecccccccccccccccc
Q 037371          157 ELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-----WLVFVQNLKQLNMQGFTMEEIISVDKLSDI  231 (330)
Q Consensus       157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  231 (330)
                      +|+++++.++.+.....        ..+++|++|++++|.+...+     .....+.++.++++++.+.+....    .+
T Consensus       202 ~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~----~l  269 (353)
T 2z80_A          202 HLILHMKQHILLLEIFV--------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF----QV  269 (353)
T ss_dssp             EEEEECSCSTTHHHHHH--------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH----HH
T ss_pred             eecCCCCccccchhhhh--------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh----hh
Confidence            99999887765432221        34789999999999665532     234567888889888666543110    00


Q ss_pred             cccccCccccCcccceeecccccccccccCCC-CCCCCccEEEEccCC
Q 037371          232 SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHCR  278 (330)
Q Consensus       232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~  278 (330)
                      .    ..+..+++|+.|+++++ .++.++... ..+++|++|++.+++
T Consensus       270 ~----~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          270 M----KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             H----HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             H----HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            0    14677899999999998 777887775 568999999999974

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=2.2e-19  Score=157.17  Aligned_cols=191  Identities=19%  Similarity=0.205  Sum_probs=138.4

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+|. .|.++++|++|++++|.+..+ |..+..+++|++|++++|...+.++...+..+++|++|++++|.+    
T Consensus        42 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l----  117 (285)
T 1ozn_A           42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL----  117 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC----
T ss_pred             CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC----
Confidence            45677774 599999999999999999966 678999999999999999744666444599999999999999988    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 ....+..+..+++|++|++++|.+..                            .....+..+++|+.|
T Consensus       118 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A          118 -----------QELGPGLFRGLAALQYLYLQDNALQA----------------------------LPDDTFRDLGNLTHL  158 (285)
T ss_dssp             -----------CCCCTTTTTTCTTCCEEECCSSCCCC----------------------------CCTTTTTTCTTCCEE
T ss_pred             -----------CEECHhHhhCCcCCCEEECCCCcccc----------------------------cCHhHhccCCCccEE
Confidence                       33445667889999999988765321                            122335666777777


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEeccccccccccccccccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG  236 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~  236 (330)
                      ++++|.++.+....        ...+++|++|++++|.+...  .++.++++|+.|++++|.+.++++.           
T Consensus       159 ~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------  219 (285)
T 1ozn_A          159 FLHGNRISSVPERA--------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-----------  219 (285)
T ss_dssp             ECCSSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-----------
T ss_pred             ECCCCcccccCHHH--------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-----------
Confidence            77766666553332        24567777777777755443  3566777777777777777666441           


Q ss_pred             CccccCcccceeeccccc
Q 037371          237 SEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~  254 (330)
                       .+..+++|++|++++++
T Consensus       220 -~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          220 -ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -HHTTCTTCCEEECCSSC
T ss_pred             -HcccCcccCEEeccCCC
Confidence             45667777777777663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=2.6e-19  Score=172.78  Aligned_cols=116  Identities=25%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             CCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            2 SLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      .+..+|. .|+++++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+     
T Consensus        43 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l-----  116 (606)
T 3vq2_A           43 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKL-----  116 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCC-----
T ss_pred             CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCcc-----
Confidence            4445554 566777777777777766654 445667777777777777654433443 66777777777777666     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  134 (330)
                                ....+..++++++|++|++++|...... +......+.+|+.|++
T Consensus       117 ----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~L  160 (606)
T 3vq2_A          117 ----------ASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDL  160 (606)
T ss_dssp             ----------CCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEEC
T ss_pred             ----------ccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEc
Confidence                      2122234667777777777776544211 1112233455777776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=6.3e-19  Score=155.78  Aligned_cols=202  Identities=17%  Similarity=0.249  Sum_probs=153.3

Q ss_pred             ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      -+.++.++++++.+|..+.  ++|++|++++|.+ ..+|..++.++++|++|++++|.+ +.            ....+.
T Consensus         9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l-~~------------~~~~~~   72 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGL-SF------------KGCCSQ   72 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC-CE------------EEEEEH
T ss_pred             CCEEEcCCCCcccCCCCCC--CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCcc-Cc------------ccCccc
Confidence            4688999999999998553  6899999999977 577877689999999999999988 22            223355


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      .+..+++|++|++++|.+..                             ....+..+++|++|+++.+.++.+..     
T Consensus        73 ~~~~~~~L~~L~Ls~n~i~~-----------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~-----  118 (306)
T 2z66_A           73 SDFGTTSLKYLDLSFNGVIT-----------------------------MSSNFLGLEQLEHLDFQHSNLKQMSE-----  118 (306)
T ss_dssp             HHHSCSCCCEEECCSCSEEE-----------------------------EEEEEETCTTCCEEECTTSEEESSTT-----
T ss_pred             ccccccccCEEECCCCcccc-----------------------------ChhhcCCCCCCCEEECCCCccccccc-----
Confidence            66678999999988765221                             11236678999999999877765432     


Q ss_pred             cCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccc-cccccccccccccccCccccCcccceeeccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEE-IISVDKLSDISEIIGSEHNIFARLEYLTMWR  252 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  252 (330)
                        ......+++|++|++++|.+...  ..+..+++|++|+++++.+.+ ..+            ..+..+++|++|++++
T Consensus       119 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          119 --FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             --TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTT
T ss_pred             --chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch------------hHHhhCcCCCEEECCC
Confidence              11246789999999999966543  357889999999999988876 333            2678899999999999


Q ss_pred             ccccccccC-CCCCCCCccEEEEccCCCCCCC
Q 037371          253 GTNVKSVYP-NPLPFPKLKKIQVFHCRQLKKL  283 (330)
Q Consensus       253 ~~~l~~l~~-~~~~~~~L~~L~i~~c~~L~~l  283 (330)
                      + .+..+.. ....+++|++|+++++ +++.+
T Consensus       185 n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  214 (306)
T 2z66_A          185 C-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSL  214 (306)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECTTS-CCSBC
T ss_pred             C-CcCCcCHHHhcCCCCCCEEECCCC-ccCcc
Confidence            8 5666643 3456899999999986 34443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=7.6e-19  Score=175.84  Aligned_cols=96  Identities=21%  Similarity=0.188  Sum_probs=78.0

Q ss_pred             ccC-ChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCcccc
Q 037371            4 SKL-PSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         4 ~~l-p~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      ..+ |..|+++++|++|+|++|.+..+ |..+.++++|++|++++|.+.+.+|. .+++++++|++|++++|.+ +.   
T Consensus        62 ~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~---  137 (844)
T 3j0a_A           62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RS---  137 (844)
T ss_dssp             CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC-CC---
T ss_pred             cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc-cc---
Confidence            455 66799999999999999999855 77899999999999999988665554 3488999999999999988 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                                ......++++++|++|++++|.+
T Consensus       138 ----------~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          138 ----------LYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             ----------CCCCGGGGTCSSCCEEEEESSCC
T ss_pred             ----------cccchhHhhCCCCCEEECCCCcC
Confidence                      12235688999999999998865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=3.3e-18  Score=162.11  Aligned_cols=93  Identities=24%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |+++++|..+.  ++|++|++++|.+..++ ..+..+++|++|++++|.+.+..|.. ++++++|++|++++|.+ +.  
T Consensus        10 n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~--   83 (520)
T 2z7x_B           10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKL-VK--   83 (520)
T ss_dssp             SCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCC-CE--
T ss_pred             CCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCce-ee--
Confidence            34556665555  56666666666666554 35666666666666666553333333 66666666666666665 11  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                                   ++..  .+++|++|++++|.+.
T Consensus        84 -------------lp~~--~l~~L~~L~L~~N~l~  103 (520)
T 2z7x_B           84 -------------ISCH--PTVNLKHLDLSFNAFD  103 (520)
T ss_dssp             -------------EECC--CCCCCSEEECCSSCCS
T ss_pred             -------------cCcc--ccCCccEEeccCCccc
Confidence                         1111  5666666666666543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=8.7e-19  Score=175.43  Aligned_cols=110  Identities=22%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             hhhhccccccEeecCCCCCc-cc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371            8 SGISNLVSLHHLDLSRTNIT-GL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus         8 ~~l~~l~~L~~L~L~~~~~~-~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      ..|+++++|++|++++|... .+ |..+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+           
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~n~l-----------  109 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFCGL-----------  109 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCCEECTTCCC-----------
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcccCEeeCcCCCC-----------
Confidence            44666666666666666322 44 445666666666666666554333443 66666666666666655           


Q ss_pred             ccCCchhhHHH--hccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371           86 LCDDAEPLMKE--LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        86 ~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  134 (330)
                          ....+..  +.++++|++|++++|....... ......+.+|++|++
T Consensus       110 ----~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A          110 ----SDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDF  155 (844)
T ss_dssp             ----SSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEE
T ss_pred             ----CcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEEC
Confidence                2222222  6667777777777665543210 011233455667766

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.3e-18  Score=155.24  Aligned_cols=230  Identities=12%  Similarity=0.062  Sum_probs=170.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcE-EEeccCCCCCcc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV-LRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~-L~l~~~~~~~~~   78 (330)
                      ++++++|..+.  +++++|+|++|+|+.+|. .|.++++|++|++++|.+.+.+|..++.++++|++ +.+.+|.+    
T Consensus        19 ~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l----   92 (350)
T 4ay9_X           19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL----   92 (350)
T ss_dssp             TTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC----
T ss_pred             CCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc----
Confidence            46889998774  689999999999999987 57899999999999998878888777899999876 45566666    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcccccccccc-Ccc
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYME-NLQ  156 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~-~L~  156 (330)
                                 ....+..++.+++|+.|++++|.+..+.....  .....+..+++ +...  ........+..+. .++
T Consensus        93 -----------~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           93 -----------LYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESV  157 (350)
T ss_dssp             -----------CEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCE
T ss_pred             -----------cccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccc--cccccccchhhcchhhh
Confidence                       33445678899999999999998655433211  11223556666 4433  3333334455554 688


Q ss_pred             EEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecc-cccccC--cccccCCccEEEEecccccccccccccccccc
Q 037371          157 ELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISE  233 (330)
Q Consensus       157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~  233 (330)
                      .|++++|.++.+....+         ...+|++|.+.++ .++.++  .+.++++|++|++++|.++.++.         
T Consensus       158 ~L~L~~N~i~~i~~~~f---------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---------  219 (350)
T 4ay9_X          158 ILWLNKNGIQEIHNSAF---------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS---------  219 (350)
T ss_dssp             EEECCSSCCCEECTTSS---------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---------
T ss_pred             hhccccccccCCChhhc---------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh---------
Confidence            89999888887754433         3457889999765 676665  47889999999999999888843         


Q ss_pred             cccCccccCcccceeecccccccccccCCCCCCCCccEEEEcc
Q 037371          234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH  276 (330)
Q Consensus       234 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~  276 (330)
                            ..|.+|+.|.+.++..++.++. ...+++|+.+++.+
T Consensus       220 ------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          220 ------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             ------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence                  3577888888888888888774 45588999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.6e-18  Score=150.47  Aligned_cols=188  Identities=19%  Similarity=0.286  Sum_probs=151.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +++.++|..+.  +++++|++++|.+..+|. .+..+++|++|++++|.+ ..+|..++.++++|++|++++|.+     
T Consensus        26 ~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l-----   97 (270)
T 2o6q_A           26 KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL-----   97 (270)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCC-----
T ss_pred             CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcC-----
Confidence            46788897776  689999999999998876 789999999999999977 567776678999999999999988     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                .......+..+++|++|++++|.+                            .......+..+++|++|+
T Consensus        98 ----------~~~~~~~~~~l~~L~~L~l~~n~l----------------------------~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           98 ----------QALPIGVFDQLVNLAELRLDRNQL----------------------------KSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             ----------CCCCTTTTTTCSSCCEEECCSSCC----------------------------CCCCTTTTTTCTTCCEEE
T ss_pred             ----------CcCCHhHcccccCCCEEECCCCcc----------------------------CeeCHHHhCcCcCCCEEE
Confidence                      323345567888899988887642                            222234578899999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      ++.|.++.+....        ...+++|++|++++|.+..++  .+.++++|++|++++|.+..+++            .
T Consensus       140 Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~  199 (270)
T 2o6q_A          140 LGYNELQSLPKGV--------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE------------G  199 (270)
T ss_dssp             CCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT------------T
T ss_pred             CCCCcCCccCHhH--------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH------------H
Confidence            9988888664333        367899999999999777655  47889999999999999988865            2


Q ss_pred             ccccCcccceeeccccc
Q 037371          238 EHNIFARLEYLTMWRGT  254 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~  254 (330)
                      .+..+++|+.|++++++
T Consensus       200 ~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             HhccccCCCEEEecCCC
Confidence            57789999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=1.3e-18  Score=170.14  Aligned_cols=73  Identities=27%  Similarity=0.412  Sum_probs=46.0

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      |.+..+|. .|+++++|++|++++|.+..+ |..+.++++|++|++++|.+ ..+|..+++++++|++|++++|.+
T Consensus        35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEEECCCCcc
Confidence            34555664 367777777777777766644 44566677777777776655 345543466666777777766665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.78  E-value=1.4e-18  Score=162.11  Aligned_cols=212  Identities=16%  Similarity=0.141  Sum_probs=151.0

Q ss_pred             hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371            8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus         8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      .+++++++|++|++++|.+..+| .+..+++|++|++++|.+. .+|   ++.+++|++|++++|.+             
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l-------------   97 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKL-------------   97 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCC-------------
T ss_pred             cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCC-------------
Confidence            46889999999999999999887 6899999999999999874 454   78999999999999988             


Q ss_pred             CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEcc-Cc
Q 037371           88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSS-KL  165 (330)
Q Consensus        88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~  165 (330)
                        ...   .++++++|++|++++|.+..+.     ...+.+|+.|++ ++.-   ...   .+..+++|++|+++.| .+
T Consensus        98 --~~~---~~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l---~~l---~l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A           98 --TNL---DVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTL---TEI---DVSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             --SCC---CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCC---SCC---CCTTCTTCCEEECTTCSCC
T ss_pred             --cee---ecCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcc---cee---ccccCCcCCEEECCCCCcc
Confidence              222   2889999999999999876542     344667999998 4322   222   4788999999999955 44


Q ss_pred             ceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCccc
Q 037371          166 EEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARL  245 (330)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  245 (330)
                      +.+           +...+++|++|++++|.++.++ ++.+++|+.|+++++.+..+               .++.+++|
T Consensus       162 ~~~-----------~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L  214 (457)
T 3bz5_A          162 TKL-----------DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL---------------DLNQNIQL  214 (457)
T ss_dssp             CCC-----------CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC---------------CCTTCTTC
T ss_pred             ccc-----------ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee---------------ccccCCCC
Confidence            433           2355677888888877666665 66777777777777766655               23445566


Q ss_pred             ceeecccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371          246 EYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       246 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                      +.|+++++ .+..++  ...+++|+.|+++++ +++.+|
T Consensus       215 ~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~  249 (457)
T 3bz5_A          215 TFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELD  249 (457)
T ss_dssp             SEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred             CEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcC
Confidence            66666555 344433  333555555555553 344433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.78  E-value=2.9e-19  Score=174.84  Aligned_cols=244  Identities=19%  Similarity=0.215  Sum_probs=160.4

Q ss_pred             CCccCCh-hhhccccccEeecCCCCCc--ccCh-hhhc--CcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCC
Q 037371            2 SLSKLPS-GISNLVSLHHLDLSRTNIT--GLPQ-ELKA--LEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRW   75 (330)
Q Consensus         2 ~l~~lp~-~l~~l~~L~~L~L~~~~~~--~lp~-~l~~--l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~   75 (330)
                      .+..++. .|..+++|++|++++|.+.  .++. .+..  .++|+.|++++|.+.+..|.. +..+++|++|++++|.+ 
T Consensus       340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l-  417 (680)
T 1ziw_A          340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGLNEI-  417 (680)
T ss_dssp             CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC-
T ss_pred             ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCCCCEEeCCCCcC-
Confidence            3445543 5888999999999998643  4443 2222  357899999988775555544 88899999999998887 


Q ss_pred             CccccccCccccCCchhhH-HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcccccccccc
Q 037371           76 SVLEEEEGSVLCDDAEPLM-KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYME  153 (330)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~  153 (330)
                                    ....+ ..+..+++|+.|++++|......  ......+..|+.|++ ++... ........+..++
T Consensus       418 --------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~-~~~~~p~~~~~l~  480 (680)
T 1ziw_A          418 --------------GQELTGQEWRGLENIFEIYLSYNKYLQLT--RNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLR  480 (680)
T ss_dssp             --------------EEECCSGGGTTCTTCCEEECCSCSEEECC--TTTTTTCTTCCEEECTTSCCB-CTTCSSCTTTTCT
T ss_pred             --------------ccccCcccccCcccccEEecCCCCcceeC--hhhhhcCcccccchhcccccc-ccccCCcccccCC
Confidence                          22232 56778888888888887654321  112233566777777 33220 1123345577788


Q ss_pred             CccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc----------CcccccCCccEEEEecccccccc
Q 037371          154 NLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL----------TWLVFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l----------~~l~~l~~L~~L~L~~~~l~~~~  223 (330)
                      +|+.|++++|.++.+....        ...+++|++|++++|.+..+          ..+.++++|++|+|++|.+..++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~  552 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDM--------LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP  552 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCEEECCCCCCCcCChhh--------hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence            8888888877777554333        25677788888888755432          12567788888888887777665


Q ss_pred             cccccccccccccCccccCcccceeecccccccccccCCCC-CCCCccEEEEccCCCCCCCCCC
Q 037371          224 SVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                      .            ..+..+++|+.|+++++ .++.++.... .+++|+.|+++++ +++.+|..
T Consensus       553 ~------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~  602 (680)
T 1ziw_A          553 V------------EVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKK  602 (680)
T ss_dssp             T------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHH
T ss_pred             H------------HHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChh
Confidence            4            14667778888888766 5666655543 4677888887774 66666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=3.5e-20  Score=164.42  Aligned_cols=236  Identities=17%  Similarity=0.105  Sum_probs=151.1

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCC-CCCCchhhhC-------CCCCCcEEEeccCCCCCccccc
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRF-LSIIPPQLIS-------GFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~-~~~~p~~~~~-------~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      ++..++|++|++++|.+ .+|..+...  |+.|++++|.+ ...+|.. +.       ++++|++|++++|.+       
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l-------  107 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEV-------  107 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBC-------
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcc-------
Confidence            45667788888888877 777766544  77778877766 2345553 43       677888888888777       


Q ss_pred             cCccccCCchhhHHHh--ccCcCcceeeEEEechhhHHHhhccc--cccCceEEEEEEeCCCCCCCccccccccccCccE
Q 037371           82 EGSVLCDDAEPLMKEL--LGLKHLNVLSWSFRSSLAVQKFLKYP--KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQE  157 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  157 (330)
                              .+..+..+  ..+++|++|++++|.+..........  ....+|++|++.-..  ........+..+++|++
T Consensus       108 --------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A          108 --------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALST  177 (312)
T ss_dssp             --------BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCE
T ss_pred             --------cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCE
Confidence                    32344443  67788888888877665432111100  012567778873222  24444466788888999


Q ss_pred             EEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-----cccccCCccEEEEeccccccccccccccccc
Q 037371          158 LELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-----WLVFVQNLKQLNMQGFTMEEIISVDKLSDIS  232 (330)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  232 (330)
                      |+++.|++.......    .......+++|++|++++|.+..++     .+.++++|++|++++|.+.+.++.       
T Consensus       178 L~Ls~N~l~~~~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------  246 (312)
T 1wwl_A          178 LDLSDNPELGERGLI----SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-------  246 (312)
T ss_dssp             EECCSCTTCHHHHHH----HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-------
T ss_pred             EECCCCCcCcchHHH----HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-------
Confidence            988866643210000    0111256788899999888666432     234678899999988888776431       


Q ss_pred             ccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCC
Q 037371          233 EIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPL  285 (330)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~  285 (330)
                          .....+++|++|+++++ .++.++....  ++|++|+++++ +++.+|.
T Consensus       247 ----~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~  291 (312)
T 1wwl_A          247 ----PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS  291 (312)
T ss_dssp             ----SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred             ----hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh
Confidence                14455788888888887 5666554433  78888888884 7777766

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=1.2e-18  Score=153.04  Aligned_cols=198  Identities=17%  Similarity=0.185  Sum_probs=122.5

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      .++++++++++++++++++.+|..+.  ++++.|++++|.+. .++...+.++++|++|++++|.+ +.   +       
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l-~~---~-------   70 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-TK---L-------   70 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCC-CE---E-------
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCcc-Cc---c-------
Confidence            37788999999999999999998664  68999999999874 44444499999999999999988 22   1       


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCccee
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEM  168 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  168 (330)
                           + ....+++|+.|++++|.+..+.                             ..+..+++|++|++++|+++.+
T Consensus        71 -----~-~~~~l~~L~~L~Ls~N~l~~l~-----------------------------~~~~~l~~L~~L~l~~N~l~~l  115 (290)
T 1p9a_G           71 -----Q-VDGTLPVLGTLDLSHNQLQSLP-----------------------------LLGQTLPALTVLDVSFNRLTSL  115 (290)
T ss_dssp             -----E-CCSCCTTCCEEECCSSCCSSCC-----------------------------CCTTTCTTCCEEECCSSCCCCC
T ss_pred             -----c-CCCCCCcCCEEECCCCcCCcCc-----------------------------hhhccCCCCCEEECCCCcCccc
Confidence                 1 1267888999988877643211                             1234455555555555555444


Q ss_pred             eeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccc
Q 037371          169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLE  246 (330)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  246 (330)
                      .+..+        ..+++|++|++++|.+..++  .+..+++|+.|+|++|.+..++.            ..+..+++|+
T Consensus       116 ~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------------~~~~~l~~L~  175 (290)
T 1p9a_G          116 PLGAL--------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------------GLLNGLENLD  175 (290)
T ss_dssp             CSSTT--------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT------------TTTTTCTTCC
T ss_pred             CHHHH--------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH------------HHhcCcCCCC
Confidence            32222        34455555555555444433  24455555555555555555433            1334455555


Q ss_pred             eeecccccccccccCCCCCCCCccEEEEcc
Q 037371          247 YLTMWRGTNVKSVYPNPLPFPKLKKIQVFH  276 (330)
Q Consensus       247 ~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~  276 (330)
                      .|+++++ .+..++......++|+.|.+.+
T Consensus       176 ~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          176 TLLLQEN-SLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred             EEECCCC-cCCccChhhcccccCCeEEeCC
Confidence            5555555 4444444444455555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.3e-18  Score=154.08  Aligned_cols=191  Identities=17%  Similarity=0.216  Sum_probs=123.7

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      .+..+++|++|++++|.+..+| .+..+++|++|++++|.+ ..++.  +..+++|++|++++|.+ +.           
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~--~~~l~~L~~L~L~~n~l-~~-----------   99 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAP--LKNLTKITELELSGNPL-KN-----------   99 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCCSCCEEECCSCCC-SC-----------
T ss_pred             cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChh--HccCCCCCEEEccCCcC-CC-----------
Confidence            3567889999999999888887 588899999999999976 55665  88999999999999888 21           


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEE  167 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (330)
                           ...+..+++|++|++++|.+..+..    ...+.+|+.|++ ++.-   ...  ..+..+++|+.|+++.|.++.
T Consensus       100 -----~~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l---~~~--~~l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          100 -----VSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQI---TNI--SPLAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             -----CGGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCC---CCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             -----chhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCcc---CcC--ccccCCCCccEEEccCCcCCC
Confidence                 2357888889998888776554332    123445666665 2211   111  125566666666666555543


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY  247 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  247 (330)
                      +..          ...+++|++|++++|.+..++.+..+++|++|++++|.+.++.              .+..+++|+.
T Consensus       166 ~~~----------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~  221 (308)
T 1h6u_A          166 LTP----------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--------------PLANTSNLFI  221 (308)
T ss_dssp             CGG----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG--------------GGTTCTTCCE
T ss_pred             Chh----------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc--------------cccCCCCCCE
Confidence            321          2445666666666665555555666666666666666655542              2345566666


Q ss_pred             eecccc
Q 037371          248 LTMWRG  253 (330)
Q Consensus       248 L~l~~~  253 (330)
                      |+++++
T Consensus       222 L~l~~N  227 (308)
T 1h6u_A          222 VTLTNQ  227 (308)
T ss_dssp             EEEEEE
T ss_pred             EEccCC
Confidence            666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.78  E-value=2.9e-18  Score=164.06  Aligned_cols=48  Identities=15%  Similarity=0.181  Sum_probs=34.7

Q ss_pred             ccccCcccceeecccccccccc-cCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371          238 EHNIFARLEYLTMWRGTNVKSV-YPNPLPFPKLKKIQVFHCRQLKKLPLNS  287 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~L~~lp~~~  287 (330)
                      .+..+++|+.|++++| .+..+ +.....+++|++|++++| +++.+|...
T Consensus       465 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~  513 (570)
T 2z63_A          465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGI  513 (570)
T ss_dssp             CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             hhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHH
Confidence            5667788888888888 45555 334456889999999986 677776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=6.6e-19  Score=168.56  Aligned_cols=235  Identities=17%  Similarity=0.139  Sum_probs=161.6

Q ss_pred             cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhh-------------------hCCCCCCc
Q 037371            5 KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQL-------------------ISGFSKLE   65 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~-------------------~~~l~~L~   65 (330)
                      .+|..+..+++|++|++++|.+..+|..+..+ +|++|++++|.+ ..+|...                   ...+++|+
T Consensus       273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~  350 (570)
T 2z63_A          273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE  350 (570)
T ss_dssp             CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred             hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-cccCcccccccCEEeCcCCccccccccccCCCCC
Confidence            34566777777777777777777777766666 677777766655 3444310                   13566666


Q ss_pred             EEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc
Q 037371           66 VLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF  144 (330)
Q Consensus        66 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~  144 (330)
                      +|++++|.+ +.            ....+..+..+++|+.|++++|.......   ....+.+|+.|++ ++..  ....
T Consensus       351 ~L~l~~n~l-~~------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l--~~~~  412 (570)
T 2z63_A          351 FLDLSRNGL-SF------------KGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNL--KQMS  412 (570)
T ss_dssp             EEECCSSCC-BE------------EEEEEHHHHTCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEE--ESCT
T ss_pred             EEeCcCCcc-Cc------------cccccccccccCccCEEECCCCccccccc---cccccCCCCEEEccCCcc--cccc
Confidence            777766665 21            11235667788888888888776543221   1234566888887 3322  1111


Q ss_pred             cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccc---ccCcccccCCccEEEEecccccc
Q 037371          145 NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK---DLTWLVFVQNLKQLNMQGFTMEE  221 (330)
Q Consensus       145 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~l~~l~~l~~L~~L~L~~~~l~~  221 (330)
                      ....+..+++|++|+++.+.+....+..        ...+++|++|++++|.+.   .+..+..+++|++|++++|.+.+
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEECCTTT--------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             chhhhhcCCCCCEEeCcCCcccccchhh--------hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence            2245778899999999977776553333        367899999999999664   24478899999999999999988


Q ss_pred             cccccccccccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCCCC
Q 037371          222 IISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCRQL  280 (330)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~~L  280 (330)
                      +.+            ..+..+++|++|+++++ .+..++.. ...+++|+.|++.+++--
T Consensus       485 ~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          485 LSP------------TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             ECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCh------------hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence            866            26788999999999998 66666554 345899999999997543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=4.8e-18  Score=164.31  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.++++|. .|.++++|++|+|++|.++.+|. .|.++++|++|++++|++ ..+|..+|.++++|++|++++|.+    
T Consensus        62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~Ls~N~l----  136 (635)
T 4g8a_A           62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNL----  136 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEECTTSCC----
T ss_pred             CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEECCCCcC----
Confidence            56777775 58888888888888888887765 577888888888888866 566665688888888888888877    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  134 (330)
                                 .......++++++|++|++++|.+..+. .......+..|+.|++
T Consensus       137 -----------~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          137 -----------ASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             -----------CCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEEC
T ss_pred             -----------CCCChhhhhcCcccCeeccccCccccCC-Cchhhccchhhhhhcc
Confidence                       2223334788889999999888754321 1111233456888887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=2.4e-17  Score=157.74  Aligned_cols=112  Identities=21%  Similarity=0.174  Sum_probs=74.8

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |+++++|..+.  ++|++|++++|.+..+| ..+..+++|++|++++|.+.+..|. ++.++++|++|++++|.+ +.  
T Consensus        41 ~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~--  114 (562)
T 3a79_B           41 RNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSHNRL-QN--  114 (562)
T ss_dssp             SCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTTSCC-CE--
T ss_pred             CCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCCCcC-Cc--
Confidence            45777887665  68888888888888766 4778888888888888877443344 488888888888888877 22  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  134 (330)
                                   ++..  .+++|++|++++|.+..+.. ......+.+|+.|++
T Consensus       115 -------------lp~~--~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L  153 (562)
T 3a79_B          115 -------------ISCC--PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGL  153 (562)
T ss_dssp             -------------ECSC--CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEE
T ss_pred             -------------cCcc--ccccCCEEECCCCCccccCc-hHhhcccCcccEEec
Confidence                         2222  67888888888877554220 011122345666666

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=1.6e-18  Score=165.25  Aligned_cols=193  Identities=19%  Similarity=0.226  Sum_probs=137.6

Q ss_pred             CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      ++++++|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|.+.+ +++.+++++++|++|++++|.+     
T Consensus        15 ~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l-----   86 (549)
T 2z81_A           15 RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHL-----   86 (549)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCC-----
T ss_pred             CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCcc-----
Confidence            46788888765  6899999999998865 5678899999999999997744 4433488999999999999888     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                ....+..++++++|++|++++|.+..... ......+.+|++|++ ++..  ........+..+++|++|
T Consensus        87 ----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A           87 ----------SSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             ----------CSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEE
T ss_pred             ----------CccCHHHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCee
Confidence                      44556668899999999998887653211 122344567888988 5442  122333467888999999


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-c-ccccCCccEEEEeccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-W-LVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~-l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +++.+.++...+...        ..+++|++|++++|....++ + ++.+++|++|+++++.+.++
T Consensus       154 ~L~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          154 EIKALSLRNYQSQSL--------KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             EEEETTCCEECTTTT--------TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             eccCCcccccChhhh--------hccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            999877776544332        55677777887777544433 2 34577777777777766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=8.6e-19  Score=152.42  Aligned_cols=208  Identities=14%  Similarity=0.169  Sum_probs=142.7

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      +..+++|+.|+++++.+..++ .+..+++|++|++++|.+ ..++.  ++.+++|++|++++|.+               
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~L~~n~l---------------   97 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDISA--LKELTNLTYLILTGNQL---------------   97 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCCGG--GTTCTTCCEEECTTSCC---------------
T ss_pred             cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCchh--hcCCCCCCEEECCCCcc---------------
Confidence            556777888888887777665 467778888888887766 34443  77788888888888776               


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK  169 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  169 (330)
                      ....+..+..+++|++|++++|.+                            .......+..+++|++|++++|.++.+.
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~l----------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~  149 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQL----------------------------QSLPDGVFDKLTNLTYLNLAHNQLQSLP  149 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCC----------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CccChhHhcCCcCCCEEECCCCcC----------------------------CccCHHHhccCCCCCEEECCCCccCccC
Confidence            223334456667777776665432                            2222334678888999999877777554


Q ss_pred             eCcccccCccCCCCCCCccEEEEecccccccCc--ccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW--LVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY  247 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  247 (330)
                      ...        ...+++|++|++++|.+..++.  ++.+++|+.|++++|.+..+++            ..+..+++|++
T Consensus       150 ~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~  209 (272)
T 3rfs_A          150 KGV--------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD------------GVFDRLTSLQY  209 (272)
T ss_dssp             TTT--------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCE
T ss_pred             HHH--------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH------------HHHhCCcCCCE
Confidence            332        2567889999999997766553  6788999999999988887765            25677889999


Q ss_pred             eecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCC
Q 037371          248 LTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK  291 (330)
Q Consensus       248 L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~  291 (330)
                      |++++++-       ...+++|+.+.+..+.--..+|.....+.
T Consensus       210 L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          210 IWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             EECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             EEccCCCc-------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            99988732       13366777777776544445665555433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=3.4e-19  Score=158.04  Aligned_cols=230  Identities=16%  Similarity=0.156  Sum_probs=167.9

Q ss_pred             CCccCChhhhccccccEeecCCCCCc--ccChhhh-------cCcccceeccCCCCCCCCCchhhh-CCCCCCcEEEecc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNIT--GLPQELK-------ALEKLRYLNLDHTRFLSIIPPQLI-SGFSKLEVLRLLS   71 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~--~lp~~l~-------~l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l~~   71 (330)
                      .+ .+|..+...  |++|++++|.+.  .+|..+.       .+++|++|++++|.+.+.+|..++ ..+++|++|++++
T Consensus        54 ~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~  130 (312)
T 1wwl_A           54 TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN  130 (312)
T ss_dssp             TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES
T ss_pred             cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC
Confidence            44 568877765  999999999885  5777665       799999999999988778887632 8899999999999


Q ss_pred             CCCCCccccccCccccCCchhhHHHhccC-----cCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc-
Q 037371           72 RGRWSVLEEEEGSVLCDDAEPLMKELLGL-----KHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF-  144 (330)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-  144 (330)
                      |.+ +.              . +..+..+     ++|++|++++|.+....  ......+.+|+.|++ +...   ... 
T Consensus       131 N~l-~~--------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l---~~~~  189 (312)
T 1wwl_A          131 VSW-AT--------------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTLDLSDNPE---LGER  189 (312)
T ss_dssp             CBC-SS--------------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCC--TTTCCCCSSCCEEECCSCTT---CHHH
T ss_pred             CCC-cc--------------h-hHHHHHHHHhhcCCCcEEEeeCCCCccch--HHHhccCCCCCEEECCCCCc---Ccch
Confidence            988 22              2 3444444     89999999998865432  122334667888888 4322   211 


Q ss_pred             -cccc--cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc---CcccccCCccEEEEeccc
Q 037371          145 -NVLH--LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL---TWLVFVQNLKQLNMQGFT  218 (330)
Q Consensus       145 -~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l---~~l~~l~~L~~L~L~~~~  218 (330)
                       ....  +..+++|++|+++.|.++.+....     ......+++|++|++++|.+...   +.+..+++|++|++++|.
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAGMETPSGVC-----SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSCCCCHHHHH-----HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             HHHHHHHhccCCCCCEEECCCCcCcchHHHH-----HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence             1122  378999999999988877332110     00013568999999999976663   356678999999999999


Q ss_pred             ccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371          219 MEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c  277 (330)
                      ++.++.             ...  ++|++|+++++ .++.++. ...+++|++|++.+.
T Consensus       265 l~~ip~-------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          265 LKQVPK-------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CSSCCS-------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             cChhhh-------------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence            987744             232  89999999998 7777754 666999999999985

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=5e-18  Score=150.27  Aligned_cols=183  Identities=21%  Similarity=0.283  Sum_probs=149.4

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      +.+..+| .+..+++|++|++++|.+..++. +..+++|++|++++|.+ ..++.  +..+++|++|++++|.+ +    
T Consensus        51 ~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~l~~n~l-~----  120 (308)
T 1h6u_A           51 TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSA--IAGLQSIKTLDLTSTQI-T----  120 (308)
T ss_dssp             SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGG--GTTCTTCCEEECTTSCC-C----
T ss_pred             CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCchh--hcCCCCCCEEECCCCCC-C----
Confidence            3567777 79999999999999999998887 99999999999999987 55664  89999999999999988 2    


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                .  ...+..+++|+.|++++|.+..+..    ...+.+|+.|++ ++.-   ..  ...+..+++|+.|+
T Consensus       121 ----------~--~~~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l---~~--~~~l~~l~~L~~L~  179 (308)
T 1h6u_A          121 ----------D--VTPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQV---SD--LTPLANLSKLTTLK  179 (308)
T ss_dssp             ----------C--CGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC---CC--CGGGTTCTTCCEEE
T ss_pred             ----------C--chhhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcC---CC--ChhhcCCCCCCEEE
Confidence                      1  1238899999999999998766544    234567999999 4432   22  22388999999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIIS  224 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~  224 (330)
                      +++|.++.+..          ...+++|++|++++|.+..++.+..+++|+.|++++|.+...+.
T Consensus       180 l~~n~l~~~~~----------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          180 ADDNKISDISP----------LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCSSCCCCCGG----------GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCccCcChh----------hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCe
Confidence            99888875532          35789999999999988887789999999999999998877643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=9.7e-20  Score=161.95  Aligned_cols=234  Identities=14%  Similarity=0.062  Sum_probs=176.1

Q ss_pred             CCCccCC-hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLP-SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |.+..++ ..|+++++|++|++++|.+..++. +..+++|++|++++|.+ ..++     ..++|++|++++|.+ +.  
T Consensus        44 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~-----~~~~L~~L~l~~n~l-~~--  113 (317)
T 3o53_A           44 NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL-----VGPSIETLHAANNNI-SR--  113 (317)
T ss_dssp             SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EEEE-----ECTTCCEEECCSSCC-SE--
T ss_pred             CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cccc-----CCCCcCEEECCCCcc-CC--
Confidence            4567777 579999999999999999986665 89999999999999976 3333     448999999999988 22  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccc-ccccCccEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQEL  158 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L  158 (330)
                                  ..   ...+++|+.|++++|.+..+..  .....+..|+.|++....  ........+ ..+++|++|
T Consensus       114 ------------~~---~~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          114 ------------VS---CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             ------------EE---ECCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEE
T ss_pred             ------------cC---ccccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEE
Confidence                        11   2246889999999998765432  122346679999882222  244444444 478999999


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEecccccccccccccccccccccC
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      +++.|.++.+..          ...+++|++|++++|.+..++ .+..+++|+.|++++|.+..++.             
T Consensus       175 ~L~~N~l~~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~-------------  231 (317)
T 3o53_A          175 NLQYNFIYDVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK-------------  231 (317)
T ss_dssp             ECTTSCCCEEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT-------------
T ss_pred             ECCCCcCccccc----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh-------------
Confidence            999888886632          124789999999999777754 58889999999999999998754             


Q ss_pred             ccccCcccceeeccccccc-ccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371          238 EHNIFARLEYLTMWRGTNV-KSVYPNPLPFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                      .+..+++|+.|++++++-. ..++.....+++|+.+.+.++..++..+..
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            6778899999999998543 233333445888999999887777765433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=1.5e-18  Score=161.78  Aligned_cols=232  Identities=16%  Similarity=0.128  Sum_probs=140.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCc-ccChhhhcCccc-------------ceeccCCCCCCCCCchhhhCCCCCCcE
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKL-------------RYLNLDHTRFLSIIPPQLISGFSKLEV   66 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L-------------~~L~l~~~~~~~~~p~~~~~~l~~L~~   66 (330)
                      |++.++|++|+++++|++|++++|.+. .+|..++++.+|             ++|++++|.+ ..+|.  +  .++|++
T Consensus        21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp~--~--~~~L~~   95 (454)
T 1jl5_A           21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE--L--PPHLES   95 (454)
T ss_dssp             -------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCCS--C--CTTCSE
T ss_pred             CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCCC--C--cCCCCE
Confidence            456788888888888888888888777 788888887765             8888888865 45555  2  367888


Q ss_pred             EEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcc
Q 037371           67 LRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFN  145 (330)
Q Consensus        67 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~  145 (330)
                      |++++|.+               .. ++.   ..++|+.|++++|....+..      ...+|++|++ ++.-   ..  
T Consensus        96 L~l~~n~l---------------~~-lp~---~~~~L~~L~l~~n~l~~l~~------~~~~L~~L~L~~n~l---~~--  145 (454)
T 1jl5_A           96 LVASCNSL---------------TE-LPE---LPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL---EK--  145 (454)
T ss_dssp             EECCSSCC---------------SS-CCC---CCTTCCEEECCSSCCSCCCS------CCTTCCEEECCSSCC---SS--
T ss_pred             EEccCCcC---------------Cc-ccc---ccCCCcEEECCCCccCcccC------CCCCCCEEECcCCCC---CC--
Confidence            88888877               21 221   24788899988887554322      2356888888 4332   32  


Q ss_pred             ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccc
Q 037371          146 VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISV  225 (330)
Q Consensus       146 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~  225 (330)
                      ...+..+++|++|++++|.++.+.            ....+|++|++++|.+..++.++++++|+.|++++|.+.+++..
T Consensus       146 lp~~~~l~~L~~L~l~~N~l~~lp------------~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          146 LPELQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             CcccCCCCCCCEEECCCCcCcccC------------CCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC
Confidence            225889999999999987777532            12357888888888777777788888888888888777665321


Q ss_pred             ccc---c-----cccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371          226 DKL---S-----DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN  286 (330)
Q Consensus       226 ~~~---~-----~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~  286 (330)
                      ...   .     .+...  ..++.+++|++|+++++ .+..++.   .+++|+.|++++| +++.+|..
T Consensus       214 ~~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~~  275 (454)
T 1jl5_A          214 PLSLESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPEL  275 (454)
T ss_dssp             CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCCC
T ss_pred             cCcccEEECcCCcCCcc--cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCcc
Confidence            000   0     00011  12445566666666665 3433322   2356666666664 45555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=2.7e-19  Score=163.34  Aligned_cols=250  Identities=14%  Similarity=0.057  Sum_probs=174.4

Q ss_pred             CccCChhhhccccccEeecCCCCCcc-----cChhhhcCcccceeccCCCCC---CCCCchhh------hCCCCCCcEEE
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNITG-----LPQELKALEKLRYLNLDHTRF---LSIIPPQL------ISGFSKLEVLR   68 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~---~~~~p~~~------~~~l~~L~~L~   68 (330)
                      +..++..+..+++|++|++++|.+..     ++..+..+++|++|++++|.+   .+.+|..+      +..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34678889999999999999998872     444577899999999998743   33556542      37899999999


Q ss_pred             eccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhH--HHhhcccccc---------CceEEEEE-Ee
Q 037371           69 LLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAV--QKFLKYPKLV---------SITQSVWV-EC  136 (330)
Q Consensus        69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~---------~~L~~L~l-~~  136 (330)
                      +++|.+ +.    .+      ...++..+..+++|++|++++|.+...  ..+.......         ..|++|++ ++
T Consensus       101 Ls~n~l-~~----~~------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A          101 LSDNAF-GP----TA------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             CCSCCC-CT----TT------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             CCCCcC-CH----HH------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            999998 11    00      124677889999999999999987532  2222222222         67999998 43


Q ss_pred             CCCCCCCccc----cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccc-----cc-Cccccc
Q 037371          137 GTYTRPPFNV----LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK-----DL-TWLVFV  206 (330)
Q Consensus       137 ~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l-~~l~~l  206 (330)
                      .-   .....    ..+..+++|+.|++++|.++.......   .......+++|++|+|++|.+.     .+ ..+..+
T Consensus       170 ~l---~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l---~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          170 RL---ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL---LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             CC---TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH---HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             CC---CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH---HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            22   32222    356788999999999777763211110   0112357899999999999663     23 357889


Q ss_pred             CCccEEEEecccccccccccccccccccccCcc--ccCcccceeeccccccccc-----ccCCC-CCCCCccEEEEccCC
Q 037371          207 QNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH--NIFARLEYLTMWRGTNVKS-----VYPNP-LPFPKLKKIQVFHCR  278 (330)
Q Consensus       207 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~i~~c~  278 (330)
                      ++|+.|+|++|.+...+.....        ..+  +.+++|+.|++++| .+..     ++... ..+++|+.|++.+|+
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~--------~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVV--------DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHH--------HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCcCEEECCCCCCchhhHHHHH--------HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            9999999999988776331000        022  44899999999998 4544     44433 347999999999974

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=2.6e-17  Score=158.38  Aligned_cols=216  Identities=20%  Similarity=0.163  Sum_probs=123.3

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |+++++|..+.  ++|++|++++|.++.+|.   .+++|++|++++|.+ ..+|.    .+++|++|++++|.+ +.   
T Consensus        50 n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l-~~---  115 (622)
T 3g06_A           50 SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV----LPPGLLELSIFSNPL-TH---  115 (622)
T ss_dssp             SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC----CCTTCCEEEECSCCC-CC---
T ss_pred             CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC----CCCCCCEEECcCCcC-CC---
Confidence            46777887766  688888888888888876   577888888888866 45554    567888888888777 22   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc--ccccc--------
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF--NVLHL--------  149 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~--~~~~l--------  149 (330)
                                  ++.   .+++|+.|++++|.+..++.      ...+|+.|++ ++..   ...  ....+        
T Consensus       116 ------------l~~---~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l---~~l~~~~~~L~~L~L~~N  171 (622)
T 3g06_A          116 ------------LPA---LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQL---ASLPALPSELCKLWAYNN  171 (622)
T ss_dssp             ------------CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCC---SCCCCCCTTCCEEECCSS
T ss_pred             ------------CCC---CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcCCcC---CCcCCccCCCCEEECCCC
Confidence                        111   34566666666655433221      1245666665 2211   110  00111        


Q ss_pred             ------ccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc
Q 037371          150 ------AYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       150 ------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  223 (330)
                            ..+++|+.|++++|.++.+.            ..+++|+.|++++|.+..++.  .+++|+.|++++|.+..++
T Consensus       172 ~l~~l~~~~~~L~~L~Ls~N~l~~l~------------~~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp  237 (622)
T 3g06_A          172 QLTSLPMLPSGLQELSVSDNQLASLP------------TLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP  237 (622)
T ss_dssp             CCSCCCCCCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC
T ss_pred             CCCCCcccCCCCcEEECCCCCCCCCC------------CccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC
Confidence                  12245555555554444321            123445555555554444332  2356666666666555542


Q ss_pred             cccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcC
Q 037371          224 SVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSS  289 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~  289 (330)
                                      ..+++|++|+++++ .+..++.   .+++|+.|++++| +++.+|.....
T Consensus       238 ----------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~  282 (622)
T 3g06_A          238 ----------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIH  282 (622)
T ss_dssp             ----------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred             ----------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhh
Confidence                            23466777777776 5555444   4567777777775 66666654443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=1.4e-17  Score=146.05  Aligned_cols=183  Identities=21%  Similarity=0.170  Sum_probs=131.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +++.++|..+.  +++++|++++|.+..+ |..+..+++|++|++++|.+ ..++.  .+.+++|++|++++|.+ .   
T Consensus        20 ~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~Ls~N~l-~---   90 (290)
T 1p9a_G           20 RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV--DGTLPVLGTLDLSHNQL-Q---   90 (290)
T ss_dssp             SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC--CSCCTTCCEEECCSSCC-S---
T ss_pred             CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccC--CCCCCcCCEEECCCCcC-C---
Confidence            46788998776  6999999999999966 45789999999999999977 55665  47899999999999988 2   


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                  .++..+..+++|+.|++++|.+..                            .....+..+++|+.|+
T Consensus        91 ------------~l~~~~~~l~~L~~L~l~~N~l~~----------------------------l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           91 ------------SLPLLGQTLPALTVLDVSFNRLTS----------------------------LPLGALRGLGELQELY  130 (290)
T ss_dssp             ------------SCCCCTTTCTTCCEEECCSSCCCC----------------------------CCSSTTTTCTTCCEEE
T ss_pred             ------------cCchhhccCCCCCEEECCCCcCcc----------------------------cCHHHHcCCCCCCEEE
Confidence                        234456788899999888775331                            2223456677777777


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS  237 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~  237 (330)
                      +++|+++.+....+        ..+++|+.|++++|.++.++  .+..+++|+.|+|++|.+..++.             
T Consensus       131 L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-------------  189 (290)
T 1p9a_G          131 LKGNELKTLPPGLL--------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-------------  189 (290)
T ss_dssp             CTTSCCCCCCTTTT--------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------
T ss_pred             CCCCCCCccChhhc--------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh-------------
Confidence            77666665533322        45677777777777666554  25667777777777777776644             


Q ss_pred             ccccCcccceeecccc
Q 037371          238 EHNIFARLEYLTMWRG  253 (330)
Q Consensus       238 ~~~~~~~L~~L~l~~~  253 (330)
                      .....++|+.|++.++
T Consensus       190 ~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          190 GFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTTTTCCCSEEECCSC
T ss_pred             hhcccccCCeEEeCCC
Confidence            3444567777777754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=1.8e-17  Score=144.05  Aligned_cols=190  Identities=17%  Similarity=0.236  Sum_probs=136.5

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      .+..++ .++.+++|++|++++|.+..++ .+..+++|++|++++|.+ ..++..+++++++|++|++++|.+       
T Consensus        52 ~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l-------  121 (272)
T 3rfs_A           52 DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQL-------  121 (272)
T ss_dssp             CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCC-------
T ss_pred             Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCcC-------
Confidence            445555 6899999999999999998875 789999999999999987 455555589999999999999988       


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG  161 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (330)
                              ....+..+..+++|++|++++|.+.                            ......+..+++|+.|+++
T Consensus       122 --------~~~~~~~~~~l~~L~~L~L~~n~l~----------------------------~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A          122 --------QSLPDGVFDKLTNLTYLNLAHNQLQ----------------------------SLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             --------CCCCTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECC
T ss_pred             --------CccCHHHhccCCCCCEEECCCCccC----------------------------ccCHHHhccCccCCEEECC
Confidence                    3334455778889999988876532                            1222345677888888888


Q ss_pred             ccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCcc
Q 037371          162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH  239 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  239 (330)
                      .|.++.+....        ...+++|++|++++|.+..++  .+..+++|+.|++++|.+.                   
T Consensus       166 ~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------------  218 (272)
T 3rfs_A          166 YNQLQSLPEGV--------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------------  218 (272)
T ss_dssp             SSCCCCCCTTT--------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------------
T ss_pred             CCCcCccCHHH--------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------------
Confidence            77776553322        256778888888888666544  3677888888888887542                   


Q ss_pred             ccCcccceeecccccccccccCCCC
Q 037371          240 NIFARLEYLTMWRGTNVKSVYPNPL  264 (330)
Q Consensus       240 ~~~~~L~~L~l~~~~~l~~l~~~~~  264 (330)
                      +.+++|+.+++..+.-...++....
T Consensus       219 ~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          219 CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCcHHHHHHHHHHhCCCcccCccc
Confidence            2345677776665543334444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=8.2e-18  Score=146.41  Aligned_cols=190  Identities=18%  Similarity=0.153  Sum_probs=132.5

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+..+|. .|.++++|++|++++|.+..++. .+..+++|++|++++|.+. .++...+.++++|++|++++|.+    
T Consensus        38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l----  112 (276)
T 2z62_A           38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL----  112 (276)
T ss_dssp             CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCC----
T ss_pred             CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCc----
Confidence            45677776 69999999999999999997765 7899999999999999874 44544499999999999999988    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 .......+..+++|++|++++|.+..                           ......+..+++|++|
T Consensus       113 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A          113 -----------ASLENFPIGHLKTLKELNVAHNLIQS---------------------------FKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             -----------CCSTTCCCTTCTTCCEEECCSSCCCC---------------------------CCCCGGGGGCTTCCEE
T ss_pred             -----------cccCchhcccCCCCCEEECcCCccce---------------------------ecCchhhccCCCCCEE
Confidence                       22233347788899999888765321                           0112346667777777


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCcc----EEEEecccccccC-cccccCCccEEEEecccccccccccccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLN----TVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISE  233 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~  233 (330)
                      ++++|.++.+....+        ..+.+|+    +|++++|.+..++ ......+|+.|++++|.+..+++         
T Consensus       155 ~Ls~N~l~~~~~~~~--------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~---------  217 (276)
T 2z62_A          155 DLSSNKIQSIYCTDL--------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD---------  217 (276)
T ss_dssp             ECCSSCCCEECGGGG--------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT---------
T ss_pred             ECCCCCCCcCCHHHh--------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH---------
Confidence            777666665543322        2223333    6777777555543 23334477777777777776654         


Q ss_pred             cccCccccCcccceeecccc
Q 037371          234 IIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       234 ~~~~~~~~~~~L~~L~l~~~  253 (330)
                         ..+..+++|+.|+++++
T Consensus       218 ---~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          218 ---GIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ---TTTTTCCSCCEEECCSS
T ss_pred             ---hHhcccccccEEEccCC
Confidence               14566777777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=1.1e-17  Score=142.60  Aligned_cols=185  Identities=17%  Similarity=0.178  Sum_probs=143.2

Q ss_pred             CCCccCCh-hhhccccccEeecCCCC-CcccCh-hhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCC
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTN-ITGLPQ-ELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWS   76 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~-~~~lp~-~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~   76 (330)
                      |.++.+|. .|+++++|++|++++|. ++.+|. .+..+++|++|++++ |.+ ..+|..++.++++|++|++++|.+ +
T Consensus        41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~L~l~~n~l-~  118 (239)
T 2xwt_C           41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKFLGIFNTGL-K  118 (239)
T ss_dssp             CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCEEEEEEECC-C
T ss_pred             CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCEEeCCCCCC-c
Confidence            56788887 69999999999999997 888876 688999999999998 766 566665589999999999999988 2


Q ss_pred             ccccccCccccCCchhhHHHhccCcCcc---eeeEEEe-chhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccc
Q 037371           77 VLEEEEGSVLCDDAEPLMKELLGLKHLN---VLSWSFR-SSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM  152 (330)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l  152 (330)
                                    . ++. +..+++|+   .|++++| .+                            .......+..+
T Consensus       119 --------------~-lp~-~~~l~~L~~L~~L~l~~N~~l----------------------------~~i~~~~~~~l  154 (239)
T 2xwt_C          119 --------------M-FPD-LTKVYSTDIFFILEITDNPYM----------------------------TSIPVNAFQGL  154 (239)
T ss_dssp             --------------S-CCC-CTTCCBCCSEEEEEEESCTTC----------------------------CEECTTTTTTT
T ss_pred             --------------c-ccc-cccccccccccEEECCCCcch----------------------------hhcCcccccch
Confidence                          1 222 56666666   7777765 31                            22223357788


Q ss_pred             cCcc-EEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecc-cccccC--ccccc-CCccEEEEecccccccccccc
Q 037371          153 ENLQ-ELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDLT--WLVFV-QNLKQLNMQGFTMEEIISVDK  227 (330)
Q Consensus       153 ~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l~--~l~~l-~~L~~L~L~~~~l~~~~~~~~  227 (330)
                      ++|+ .|+++.|.++.+....+        .. ++|++|++++| .++.++  .+.++ ++|+.|+++++.+..++.   
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~--------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~---  222 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAF--------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS---  222 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTT--------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC---
T ss_pred             hcceeEEEcCCCCCcccCHhhc--------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh---
Confidence            9999 99999888886644332        22 68999999999 587764  57888 999999999999988743   


Q ss_pred             cccccccccCccccCcccceeecccccc
Q 037371          228 LSDISEIIGSEHNIFARLEYLTMWRGTN  255 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~  255 (330)
                                  ..|++|+.|++.++..
T Consensus       223 ------------~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          223 ------------KGLEHLKELIARNTWT  238 (239)
T ss_dssp             ------------TTCTTCSEEECTTC--
T ss_pred             ------------hHhccCceeeccCccC
Confidence                        2789999999988743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=3.5e-17  Score=140.47  Aligned_cols=177  Identities=14%  Similarity=0.205  Sum_probs=126.1

Q ss_pred             hcc-ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           11 SNL-VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        11 ~~l-~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      +.| ...++++++++.+..+|..+.  ++++.|++++|.+.+..+. .++++++|++|++++|.+               
T Consensus        10 C~C~~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l---------------   71 (251)
T 3m19_A           10 CTCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQL---------------   71 (251)
T ss_dssp             SEEEGGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCC---------------
T ss_pred             eEcCCCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcC---------------
Confidence            444 567889999999888887665  6899999999987554444 488999999999999888               


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK  169 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  169 (330)
                      ....+..+..+++|++|++++|.+.                            ......+..+++|++|++++|.++.+.
T Consensus        72 ~~~~~~~~~~l~~L~~L~L~~n~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~  123 (251)
T 3m19_A           72 QTLSAGVFDDLTELGTLGLANNQLA----------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLP  123 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CccCHhHhccCCcCCEEECCCCccc----------------------------ccChhHhcccCCCCEEEcCCCcCCCcC
Confidence            3344555777888888887766422                            122234567778888888877776554


Q ss_pred             eCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY  247 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  247 (330)
                      ...        ...+++|++|++++|.+..++  .++.+++|++|+|++|.+..+++            ..+..+++|++
T Consensus       124 ~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~  183 (251)
T 3m19_A          124 SGV--------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH------------GAFDRLGKLQT  183 (251)
T ss_dssp             TTT--------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCE
T ss_pred             hhH--------hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH------------HHHhCCCCCCE
Confidence            332        255777888888888666654  36778888888888887777654            25666778888


Q ss_pred             eecccc
Q 037371          248 LTMWRG  253 (330)
Q Consensus       248 L~l~~~  253 (330)
                      |+++++
T Consensus       184 L~l~~N  189 (251)
T 3m19_A          184 ITLFGN  189 (251)
T ss_dssp             EECCSC
T ss_pred             EEeeCC
Confidence            888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.7e-18  Score=154.85  Aligned_cols=208  Identities=14%  Similarity=0.074  Sum_probs=134.3

Q ss_pred             hhhhcc--ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCC-CchhhhCCCCCCcEEEeccCCCCCccccccCc
Q 037371            8 SGISNL--VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSI-IPPQLISGFSKLEVLRLLSRGRWSVLEEEEGS   84 (330)
Q Consensus         8 ~~l~~l--~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   84 (330)
                      ..+..+  +++++|+++++.+...+..+..+++|++|++++|.+... ++.. +..+++|++|++++|.+          
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~~l----------  130 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRL----------  130 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBC----------
T ss_pred             HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCccc----------
Confidence            345555  788888888887776656677788888888888866433 5553 77888888888888877          


Q ss_pred             cccCCchhhHHHhccCcCcceeeEEEe-chhhHHHhhccccccCceEEEEE-EeCCCCCCCc-ccccccccc-CccEEEE
Q 037371           85 VLCDDAEPLMKELLGLKHLNVLSWSFR-SSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF-NVLHLAYME-NLQELEL  160 (330)
Q Consensus        85 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~l~~l~-~L~~L~l  160 (330)
                           ....+..+..+++|++|++++| .+.. ..+......+.+|++|++ ++..  .... ....+..++ +|++|++
T Consensus       131 -----~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          131 -----SDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFD--FTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             -----CHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTT--CCHHHHHHHHHHSCTTCCEEEC
T ss_pred             -----CHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCC--cChHHHHHHHHhcccCCCEEEe
Confidence                 5567777888888888888877 3332 112222233566888888 5523  2322 233466778 8888888


Q ss_pred             Ecc--CcceeeeCcccccCccCCCCCCCccEEEEeccc-ccc--cCcccccCCccEEEEeccc-cccccccccccccccc
Q 037371          161 GSS--KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCR-GKD--LTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEI  234 (330)
Q Consensus       161 ~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~--l~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~  234 (330)
                      +++  .+++....       .....+++|++|++++|. +++  +..+.++++|++|+++++. +.....          
T Consensus       203 ~~~~~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----------  265 (336)
T 2ast_B          203 SGYRKNLQKSDLS-------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL----------  265 (336)
T ss_dssp             CSCGGGSCHHHHH-------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG----------
T ss_pred             CCCcccCCHHHHH-------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH----------
Confidence            854  33311100       012356788888888884 443  5567778888888888753 222211          


Q ss_pred             ccCccccCcccceeecccc
Q 037371          235 IGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       235 ~~~~~~~~~~L~~L~l~~~  253 (330)
                        ..+..+++|+.|++++|
T Consensus       266 --~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          266 --LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             --GGGGGCTTCCEEECTTS
T ss_pred             --HHHhcCCCCCEEeccCc
Confidence              14556788888888877

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=1.3e-16  Score=136.98  Aligned_cols=168  Identities=21%  Similarity=0.300  Sum_probs=129.2

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +++.++|..+.  +++++|++++|.+..++. .+..+++|++|++++|.+.+ ++..++..+++|++|++++|.+     
T Consensus        24 ~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l-----   95 (251)
T 3m19_A           24 KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQL-----   95 (251)
T ss_dssp             CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-----
T ss_pred             CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcc-----
Confidence            46788998776  699999999999996655 68999999999999998855 4444589999999999999998     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                ....+..+..+++|++|++++|.+.                            ......+..+++|+.|+
T Consensus        96 ----------~~~~~~~~~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           96 ----------ASLPLGVFDHLTQLDKLYLGGNQLK----------------------------SLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             ----------CCCCTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEE
T ss_pred             ----------cccChhHhcccCCCCEEEcCCCcCC----------------------------CcChhHhccCCcccEEE
Confidence                      3344456778889999988876532                            12223466788888888


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +++|.++.+....        ...+++|++|+|++|.+..++  .+..+++|+.|++++|.+...
T Consensus       138 Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          138 LNTNQLQSIPAGA--------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCcCCccCHHH--------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8888877654433        356788899999888766654  477888999999988776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=3.9e-17  Score=153.54  Aligned_cols=209  Identities=17%  Similarity=0.158  Sum_probs=159.2

Q ss_pred             ccChhhhcCc----ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCc
Q 037371           28 GLPQELKALE----KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHL  103 (330)
Q Consensus        28 ~lp~~l~~l~----~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  103 (330)
                      .+|..+..+.    +|++|++++|.+.+..|.. ++.+++|++|++++|.+               ....+  +..+++|
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l---------------~~~~~--l~~l~~L   82 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVL---------------YETLD--LESLSTL   82 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCC---------------EEEEE--CTTCTTC
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCC---------------CCCcc--cccCCCC
Confidence            5666665554    8999999999885554554 99999999999999998               22222  8899999


Q ss_pred             ceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCC
Q 037371          104 NVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRN  182 (330)
Q Consensus       104 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  182 (330)
                      ++|++++|.+..+.       ...+|+.|++ ++.-   ....   ...+++|+.|++++|.++.+.+..        ..
T Consensus        83 ~~L~Ls~N~l~~l~-------~~~~L~~L~L~~N~l---~~~~---~~~l~~L~~L~L~~N~l~~~~~~~--------~~  141 (487)
T 3oja_A           83 RTLDLNNNYVQELL-------VGPSIETLHAANNNI---SRVS---CSRGQGKKNIYLANNKITMLRDLD--------EG  141 (487)
T ss_dssp             CEEECCSSEEEEEE-------ECTTCCEEECCSSCC---CCEE---ECCCSSCEEEECCSSCCCSGGGBC--------GG
T ss_pred             CEEEecCCcCCCCC-------CCCCcCEEECcCCcC---CCCC---ccccCCCCEEECCCCCCCCCCchh--------hc
Confidence            99999998765432       2367888988 4322   3322   235689999999988887654333        35


Q ss_pred             CCCCccEEEEecccccc--cCccc-ccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371          183 GFRSLNTVVLRSCRGKD--LTWLV-FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV  259 (330)
Q Consensus       183 ~~~~L~~L~L~~~~~~~--l~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  259 (330)
                      .+++|++|++++|.+..  +..+. .+++|+.|+|++|.+..++              ....+++|+.|+++++ .+..+
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------------~~~~l~~L~~L~Ls~N-~l~~~  206 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------------GQVVFAKLKTLDLSSN-KLAFM  206 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------CCCCCTTCCEEECCSS-CCCEE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------------ccccCCCCCEEECCCC-CCCCC
Confidence            68999999999996665  33454 7999999999999998883              3345899999999998 67777


Q ss_pred             cCCCCCCCCccEEEEccCCCCCCCCCCCcCCC
Q 037371          260 YPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK  291 (330)
Q Consensus       260 ~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~  291 (330)
                      +.....+++|+.|+++++ .+..+|.....+.
T Consensus       207 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~  237 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ  237 (487)
T ss_dssp             CGGGGGGTTCSEEECTTS-CCCEECTTCCCCT
T ss_pred             CHhHcCCCCccEEEecCC-cCcccchhhccCC
Confidence            766667899999999995 7888887765543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=6.6e-17  Score=133.60  Aligned_cols=152  Identities=19%  Similarity=0.270  Sum_probs=79.4

Q ss_pred             hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      +.+++|++|++++|.+..+| .+..+++|++|++++|.+ ..++.  ++.+++|++|++++|.+               .
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~~~--l~~l~~L~~L~l~~n~l---------------~  101 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNYNP--ISGLSNLERLRIMGKDV---------------T  101 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCCGG--GTTCTTCCEEEEECTTC---------------B
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccchh--hhcCCCCCEEEeECCcc---------------C
Confidence            45556666666666666555 455666666666666533 33332  55666666666666555               2


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccC-cceee
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSK-LEEMK  169 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~  169 (330)
                      ...+..+..+++|+.|++++|.+.                            ......+..+++|++|++++|. ++++.
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~i~----------------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHSAHD----------------------------DSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSSBCB----------------------------GGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             cccChhhcCCCCCCEEEecCCccC----------------------------cHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            233344555555555555544321                            1112234455566666666443 44331


Q ss_pred             eCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccc
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTM  219 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l  219 (330)
                                ....+++|++|++++|.+.+++.+..+++|+.|++++|.+
T Consensus       154 ----------~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          154 ----------PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ----------GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred             ----------hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence                      1234556666666666555555556666666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=1.7e-17  Score=146.89  Aligned_cols=225  Identities=15%  Similarity=0.087  Sum_probs=143.4

Q ss_pred             cccEeecCCCCCc--ccCh--hhhcCcccceeccCCCCCCCCCchhhh-CCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           15 SLHHLDLSRTNIT--GLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLI-SGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        15 ~L~~L~L~~~~~~--~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      .++.+.+.++.+.  .+..  .+..+++|++|++++|.+.+..|..++ ..+++|++|++++|.+...   .        
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~---~--------  133 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG---R--------  133 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST---T--------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch---h--------
Confidence            4667777777665  1211  123456688888888877667776522 7788888888888877110   0        


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCC---cc-ccccccccCccEEEEEccC
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPP---FN-VLHLAYMENLQELELGSSK  164 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~---~~-~~~l~~l~~L~~L~l~~~~  164 (330)
                      .......+..+++|++|++++|.+....  ......+.+|++|++ +...   ..   .. ...+..+++|++|++++|.
T Consensus       134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          134 SWLAELQQWLKPGLKVLSIAQAHSPAFS--CEQVRAFPALTSLDLSDNPG---LGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             SSHHHHHTTBCSCCCEEEEECCSSCCCC--TTSCCCCTTCCEEECCSCTT---CHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             hhhHHHHhhhccCCCEEEeeCCCcchhh--HHHhccCCCCCEEECCCCCC---ccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            0011244557888888888887764322  122234566788877 3321   11   11 1234678899999999777


Q ss_pred             cceeeeCcccccCccCCCCCCCccEEEEeccccccc--Cccccc---CCccEEEEecccccccccccccccccccccCcc
Q 037371          165 LEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFV---QNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH  239 (330)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l---~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  239 (330)
                      ++.+.....     .....+++|++|++++|.+...  +.+..+   ++|++|++++|.++.++.             ..
T Consensus       209 l~~l~~~~~-----~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-------------~~  270 (310)
T 4glp_A          209 METPTGVCA-----ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-------------GL  270 (310)
T ss_dssp             CCCHHHHHH-----HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-------------CC
T ss_pred             CCchHHHHH-----HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-------------hh
Confidence            764322100     0013568899999999966654  334444   799999999998887743             22


Q ss_pred             ccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371          240 NIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC  277 (330)
Q Consensus       240 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c  277 (330)
                        +++|+.|+++++ .++.++. ...+++|+.|++++.
T Consensus       271 --~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          271 --PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             --CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred             --cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence              379999999988 6666644 456899999999885

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=2.1e-16  Score=152.12  Aligned_cols=211  Identities=18%  Similarity=0.140  Sum_probs=140.1

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.+ ..+|.    .+++|+.|++++|.+ +.   
T Consensus        71 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~l~~----~l~~L~~L~L~~N~l-~~---  135 (622)
T 3g06_A           71 NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL-THLPA----LPSGLCKLWIFGNQL-TS---  135 (622)
T ss_dssp             CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC-CCCCC----CCTTCCEEECCSSCC-SC---
T ss_pred             CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC-CCCCC----CCCCcCEEECCCCCC-Cc---
Confidence            56777776   56788888888888888876   678888888888866 44444    456666777776665 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhcc--------------ccccCceEEEEEEeCCCCCCCccc
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY--------------PKLVSITQSVWVECGTYTRPPFNV  146 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~~~~~~~~  146 (330)
                      +            +.   .+++|++|++++|.+..++.....              .....+|+.|++..+.  ..... 
T Consensus       136 l------------p~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~--l~~l~-  197 (622)
T 3g06_A          136 L------------PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ--LASLP-  197 (622)
T ss_dssp             C------------CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC--CSCCC-
T ss_pred             C------------CC---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC--CCCCC-
Confidence            1            11   125555555555544332111100              0223556777762222  12111 


Q ss_pred             cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccccc
Q 037371          147 LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVD  226 (330)
Q Consensus       147 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~  226 (330)
                         ..+++|+.|++++|.++.+.            ..+++|++|++++|.++.++  ..+++|+.|++++|.+..++   
T Consensus       198 ---~~~~~L~~L~L~~N~l~~l~------------~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp---  257 (622)
T 3g06_A          198 ---TLPSELYKLWAYNNRLTSLP------------ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLP---  257 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSSCC------------CCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCC---
T ss_pred             ---CccchhhEEECcCCcccccC------------CCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCC---
Confidence               13478999999988777542            23578999999999777766  56789999999998887762   


Q ss_pred             ccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371          227 KLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                                 .  .+++|+.|++++| .+..++.....+++|+.|++.+++
T Consensus       258 -----------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          258 -----------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             -----------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             -----------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence                       2  5688999999988 677776666678999999999864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=1.7e-16  Score=139.29  Aligned_cols=174  Identities=18%  Similarity=0.235  Sum_probs=117.3

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      .+..+++|++|++++|.+..+|. +..+++|++|++++|.+ ..++.  ++++++|++|++++|.+              
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~--l~~l~~L~~L~l~~n~l--------------  102 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKV--------------  102 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC--------------
T ss_pred             chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCcc-CCCcc--cccCCCCCEEECCCCcC--------------
Confidence            35678889999999998888864 78889999999999877 45555  78899999999999887              


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEE  167 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (330)
                       ..  ...+..+++|++|++++|.+..+..+    ..+.+|+.|++ ++.-   ...  ..+..+++|+.|++++|.++.
T Consensus       103 -~~--~~~l~~l~~L~~L~L~~n~i~~~~~l----~~l~~L~~L~l~~n~l---~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          103 -KD--LSSLKDLKKLKSLSLEHNGISDINGL----VHLPQLESLYLGNNKI---TDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             -CC--GGGGTTCTTCCEEECTTSCCCCCGGG----GGCTTCCEEECCSSCC---CCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             -CC--ChhhccCCCCCEEECCCCcCCCChhh----cCCCCCCEEEccCCcC---Ccc--hhhccCCCCCEEEccCCcccc
Confidence             21  33478888888888888765543322    22445666666 3221   211  446666667777776666554


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +.+          ...+++|++|++++|.+..++.+..+++|+.|++++|.+...
T Consensus       171 ~~~----------l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          171 IVP----------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CGG----------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred             chh----------hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCC
Confidence            321          245666777777766666666666667777777766655544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.67  E-value=4.7e-16  Score=144.83  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE  174 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  174 (330)
                      .++++++|++|++++|.+..++.      ...+|++|++ ++..   ..  ...+..+++|+.|+++.|.++.+.     
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l---~~--l~~~~~l~~L~~L~l~~N~l~~l~-----  211 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQL---EE--LPELQNLPFLTAIYADNNSLKKLP-----  211 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCC---SS--CCCCTTCTTCCEEECCSSCCSSCC-----
T ss_pred             ccCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcC---Cc--CccccCCCCCCEEECCCCcCCcCC-----
Confidence            47888888888888887554322      2346888888 4322   22  235788899999999877776431     


Q ss_pred             ccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371          175 EVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       175 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                             ...++|++|++++|.+..++.++.+++|++|++++|.+..+
T Consensus       212 -------~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          212 -------DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             -------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             -------CCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc
Confidence                   11247788888888666666677788888888887777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=7.7e-18  Score=152.44  Aligned_cols=250  Identities=14%  Similarity=0.055  Sum_probs=164.8

Q ss_pred             CCcc-CChhhhccccccEeecCCCCCcccC-----hhhhcCc-ccceeccCCCCCCCCCchhhhCCC-----CCCcEEEe
Q 037371            2 SLSK-LPSGISNLVSLHHLDLSRTNITGLP-----QELKALE-KLRYLNLDHTRFLSIIPPQLISGF-----SKLEVLRL   69 (330)
Q Consensus         2 ~l~~-lp~~l~~l~~L~~L~L~~~~~~~lp-----~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~~l-----~~L~~L~l   69 (330)
                      +++. +|..+...++|++|++++|.+...+     ..+..++ +|++|++++|.+....+.. +..+     ++|++|++
T Consensus         9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A            9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNL   87 (362)
T ss_dssp             TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEEC
T ss_pred             cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEEC
Confidence            3443 3444555566999999999998766     5678888 8999999999885554543 5554     99999999


Q ss_pred             ccCCCCCccccccCccccCCchhhHHHhccC-cCcceeeEEEechhhH--HHhhccccc-cCceEEEEE-EeCCCCCCCc
Q 037371           70 LSRGRWSVLEEEEGSVLCDDAEPLMKELLGL-KHLNVLSWSFRSSLAV--QKFLKYPKL-VSITQSVWV-ECGTYTRPPF  144 (330)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~--~~~~~~~~~-~~~L~~L~l-~~~~~~~~~~  144 (330)
                      ++|.+ +.   .       ....+...+..+ ++|++|++++|.+...  ..+...... ...|++|++ ++.-   ...
T Consensus        88 s~n~l-~~---~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~  153 (362)
T 3goz_A           88 SGNFL-SY---K-------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL---GIK  153 (362)
T ss_dssp             CSSCG-GG---S-------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG---GGS
T ss_pred             cCCcC-Ch---H-------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC---CHH
Confidence            99998 21   0       022233446666 8999999999987542  223222222 357999999 4322   222


Q ss_pred             cc----ccccccc-CccEEEEEccCcceeeeCcccccCccCCCCC-CCccEEEEecccccc-----cC-cccc-cCCccE
Q 037371          145 NV----LHLAYME-NLQELELGSSKLEEMKIDSTEEVKKLFRNGF-RSLNTVVLRSCRGKD-----LT-WLVF-VQNLKQ  211 (330)
Q Consensus       145 ~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~-----l~-~l~~-l~~L~~  211 (330)
                      ..    ..+..++ +|++|++++|.++........    .....+ ++|++|+|++|.+.+     ++ .+.. .++|++
T Consensus       154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELA----KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH----HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            21    2344555 999999998887755432210    011234 589999999997666     22 3444 459999


Q ss_pred             EEEecccccccccccccccccccccCccccCcccceeeccccc-------ccccccCCCCCCCCccEEEEccCC
Q 037371          212 LNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT-------NVKSVYPNPLPFPKLKKIQVFHCR  278 (330)
Q Consensus       212 L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~~~~L~~L~i~~c~  278 (330)
                      |+|++|.+.+.+.....        .....+++|+.|++++|.       .+..+......+++|+.|+++++.
T Consensus       230 L~Ls~N~l~~~~~~~l~--------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLK--------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EECCSSCCCCCCHHHHH--------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             EECcCCCCCcHHHHHHH--------HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            99999988876442111        145678999999999884       133333444457788888888753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=2.2e-17  Score=147.59  Aligned_cols=188  Identities=22%  Similarity=0.160  Sum_probs=141.2

Q ss_pred             CccCChhhhccccccEeecCCCCCc-c-cChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccC-CCCCccc
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNIT-G-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSR-GRWSVLE   79 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~-~-lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~-~~~~~~~   79 (330)
                      +...+..+.++++|++|++++|.+. . +|..+..+++|++|++++|.+....+.. ++++++|++|++++| .+     
T Consensus        82 l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l-----  155 (336)
T 2ast_B           82 MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF-----  155 (336)
T ss_dssp             ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSC-----
T ss_pred             ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCC-----
Confidence            4455556778999999999999987 3 8888899999999999999875566665 889999999999999 45     


Q ss_pred             cccCccccCCch-hhHHHhccCcCcceeeEEEe-chhhHHHhhccccccC-ceEEEEE-EeC-CCCCC-Ccccccccccc
Q 037371           80 EEEGSVLCDDAE-PLMKELLGLKHLNVLSWSFR-SSLAVQKFLKYPKLVS-ITQSVWV-ECG-TYTRP-PFNVLHLAYME  153 (330)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~l-~~~-~~~~~-~~~~~~l~~l~  153 (330)
                                .. ..+..+..+++|++|++++| .+... .+......++ +|++|++ ++. .  .. ......+..++
T Consensus       156 ----------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~l~~~~~~~~  222 (336)
T 2ast_B          156 ----------SEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKN--LQKSDLSTLVRRCP  222 (336)
T ss_dssp             ----------CHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGG--SCHHHHHHHHHHCT
T ss_pred             ----------CHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCccc--CCHHHHHHHHhhCC
Confidence                      32 36667889999999999998 65431 1122223355 8999999 553 2  12 22234567899


Q ss_pred             CccEEEEEccC-cceeeeCcccccCccCCCCCCCccEEEEecc-cccc--cCcccccCCccEEEEecc
Q 037371          154 NLQELELGSSK-LEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKD--LTWLVFVQNLKQLNMQGF  217 (330)
Q Consensus       154 ~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--l~~l~~l~~L~~L~L~~~  217 (330)
                      +|++|+++++. +++..+..        ...+++|++|++++| .+.+  +..+.++++|+.|+++++
T Consensus       223 ~L~~L~l~~~~~l~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQE--------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGGG--------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCEEeCCCCCcCCHHHHHH--------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            99999999555 55332222        356799999999999 4443  335788999999999987

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=2.5e-16  Score=151.29  Aligned_cols=175  Identities=18%  Similarity=0.216  Sum_probs=136.9

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      .+..+.+|++|++++|.+..+| .+..+++|+.|++++|.+ ..++.  +..+++|+.|++++|.+              
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~--l~~l~~L~~L~Ls~N~l--------------   99 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP--LTNLKNLGWLFLDENKI--------------   99 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-CCCGG--GGGCTTCCEEECCSSCC--------------
T ss_pred             chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-CCChh--hccCCCCCEEECcCCCC--------------
Confidence            3677889999999999998886 588999999999999977 45555  78999999999999888              


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEE  167 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (330)
                       .  .+..+..+++|+.|++++|.+..+..+    ..+.+|+.|++ ++..   ...  ..+..+++|+.|++++|.++.
T Consensus       100 -~--~l~~l~~l~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~l---~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          100 -K--DLSSLKDLKKLKSLSLEHNGISDINGL----VHLPQLESLYLGNNKI---TDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             -C--CCTTSTTCTTCCEEECTTSCCCCCGGG----GGCTTCSEEECCSSCC---CCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             -C--CChhhccCCCCCEEEecCCCCCCCccc----cCCCccCEEECCCCcc---CCc--hhhcccCCCCEEECcCCcCCC
Confidence             2  123688899999999998887654432    33567888888 4322   222  567888999999999777775


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  223 (330)
                      +.+          ...+++|+.|+|++|.+..++.+..+++|+.|+|++|.+...+
T Consensus       168 ~~~----------l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          168 IVP----------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CGG----------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred             chh----------hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence            432          3678899999999998888888888999999999998776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=3.3e-17  Score=149.51  Aligned_cols=217  Identities=18%  Similarity=0.202  Sum_probs=153.9

Q ss_pred             CChhhhccccccEeecCCCCCc----ccChhh-------hcCcccceeccCCCCCCC----CCchhhhCCCCCCcEEEec
Q 037371            6 LPSGISNLVSLHHLDLSRTNIT----GLPQEL-------KALEKLRYLNLDHTRFLS----IIPPQLISGFSKLEVLRLL   70 (330)
Q Consensus         6 lp~~l~~l~~L~~L~L~~~~~~----~lp~~l-------~~l~~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l~   70 (330)
                      ++..+..+++|++|+|++|.+.    .+|..+       ..+++|++|++++|.+..    .+|.. +..+++|++|+++
T Consensus        52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~  130 (386)
T 2ca6_A           52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLH  130 (386)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECC
T ss_pred             HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECc
Confidence            3445778999999999998554    445544       689999999999998855    25654 8899999999999


Q ss_pred             cCCCCCccccccCccccCCchhhHHHhccC---------cCcceeeEEEechh--hHHHhhccccccCceEEEEE-EeCC
Q 037371           71 SRGRWSVLEEEEGSVLCDDAEPLMKELLGL---------KHLNVLSWSFRSSL--AVQKFLKYPKLVSITQSVWV-ECGT  138 (330)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l-~~~~  138 (330)
                      +|.+ +.   . +      ...+...+..+         ++|++|++++|.+.  ....+......+.+|++|++ ++.-
T Consensus       131 ~n~l-~~---~-~------~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  199 (386)
T 2ca6_A          131 NNGL-GP---Q-A------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI  199 (386)
T ss_dssp             SSCC-HH---H-H------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCCC-CH---H-H------HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            9988 21   0 0      11233445455         89999999999874  45544444455678999999 4432


Q ss_pred             CCCCC-----ccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------Ccc--cc
Q 037371          139 YTRPP-----FNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWL--VF  205 (330)
Q Consensus       139 ~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l--~~  205 (330)
                         ..     .....+..+++|+.|++++|.++.......    +.....+++|++|+|++|.+...      ..+  +.
T Consensus       200 ---~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          200 ---RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ---CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ---CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH----HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence               21     122267889999999999887753211110    11135678999999999976653      344  34


Q ss_pred             cCCccEEEEecccccc-----cccccccccccccccCcc-ccCcccceeeccccc
Q 037371          206 VQNLKQLNMQGFTMEE-----IISVDKLSDISEIIGSEH-NIFARLEYLTMWRGT  254 (330)
Q Consensus       206 l~~L~~L~L~~~~l~~-----~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  254 (330)
                      +++|+.|+|++|.+..     ++.             .+ ..+++|++|+++++.
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~-------------~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKT-------------VIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHH-------------HHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHH-------------HHHhcCCCceEEEccCCc
Confidence            8999999999999887     322             33 568999999999984

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=139.94  Aligned_cols=205  Identities=15%  Similarity=0.080  Sum_probs=149.0

Q ss_pred             ccccccEeecCCCCCc-ccChhh--hcCcccceeccCCCCCCCCCc---hhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371           12 NLVSLHHLDLSRTNIT-GLPQEL--KALEKLRYLNLDHTRFLSIIP---PQLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus        12 ~l~~L~~L~L~~~~~~-~lp~~l--~~l~~L~~L~l~~~~~~~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      .+++|++|++++|.+. ..|..+  ..+++|++|++++|.+.+..+   ...+..+++|++|++++|.+           
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-----------  157 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-----------  157 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-----------
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-----------
Confidence            3567999999999988 566666  889999999999998866544   22256899999999999988           


Q ss_pred             ccCCchhhHHHhccCcCcceeeEEEechhhHHHhhcc--ccccCceEEEEE-EeCCCCCCCccc--c-ccccccCccEEE
Q 037371           86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY--PKLVSITQSVWV-ECGTYTRPPFNV--L-HLAYMENLQELE  159 (330)
Q Consensus        86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l-~~~~~~~~~~~~--~-~l~~l~~L~~L~  159 (330)
                          ....+..++.+++|++|++++|.......+...  .....+|++|++ ++.-   .....  . .+..+++|++|+
T Consensus       158 ----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          158 ----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM---ETPTGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             ----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC---CCHHHHHHHHHHHTCCCSSEE
T ss_pred             ----chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC---CchHHHHHHHHhcCCCCCEEE
Confidence                445566788999999999999986543322211  134556888888 4322   22111  1 246889999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCcc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH  239 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  239 (330)
                      +++|.++...+...     .....+++|++|++++|.++.++.-- .++|+.|+|++|.+.++ +             ..
T Consensus       231 Ls~N~l~~~~p~~~-----~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~-~-------------~~  290 (310)
T 4glp_A          231 LSHNSLRATVNPSA-----PRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA-P-------------QP  290 (310)
T ss_dssp             CTTSCCCCCCCSCC-----SSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC-C-------------CT
T ss_pred             CCCCCCCccchhhH-----HhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC-c-------------hh
Confidence            99888886633322     01122379999999999777765321 38999999999999877 3             45


Q ss_pred             ccCcccceeeccccc
Q 037371          240 NIFARLEYLTMWRGT  254 (330)
Q Consensus       240 ~~~~~L~~L~l~~~~  254 (330)
                      ..+++|+.|++++++
T Consensus       291 ~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          291 DELPEVDNLTLDGNP  305 (310)
T ss_dssp             TSCCCCSCEECSSTT
T ss_pred             hhCCCccEEECcCCC
Confidence            678999999999873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.63  E-value=1.7e-17  Score=154.65  Aligned_cols=196  Identities=16%  Similarity=0.164  Sum_probs=129.2

Q ss_pred             hhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCCCchhhhCCCC----CCcEEEeccCCCCCcccc
Q 037371           10 ISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS----KLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~----~L~~L~l~~~~~~~~~~~   80 (330)
                      +..+++|++|++++|++.     .++..+..+++|++|++++|.+....+..+...+.    +|++|++++|.+ +.   
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-~~---   99 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TG---   99 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC-BG---
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC-CH---
Confidence            778899999999999988     56777888999999999999775444444344555    799999999988 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhh--HHHhhcc-ccccCceEEEEE-EeCCCCCCCcc----ccccccc
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKY-PKLVSITQSVWV-ECGTYTRPPFN----VLHLAYM  152 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~-~~~~~~L~~L~l-~~~~~~~~~~~----~~~l~~l  152 (330)
                       .+      ....+..+..+++|++|++++|.+..  ...+... ......|++|++ ++.-   ....    ...+..+
T Consensus       100 -~~------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l---~~~~~~~l~~~l~~~  169 (461)
T 1z7x_W          100 -AG------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL---SAASCEPLASVLRAK  169 (461)
T ss_dssp             -GG------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC---BGGGHHHHHHHHHHC
T ss_pred             -HH------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC---CHHHHHHHHHHHhhC
Confidence             00      13567888999999999999988653  2222221 122346899998 5432   2222    2345677


Q ss_pred             cCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc------cCcccccCCccEEEEeccccccc
Q 037371          153 ENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD------LTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      ++|++|+++++.+++........   ......++|++|++++|.+..      ...+..+++|++|+++++.+.+.
T Consensus       170 ~~L~~L~L~~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          170 PDFKELTVSNNDINEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHH---HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             CCCCEEECcCCCcchHHHHHHHH---HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            89999999977666432221100   000124567777777775544      22455677777777777666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=1.4e-15  Score=137.02  Aligned_cols=209  Identities=15%  Similarity=0.177  Sum_probs=144.4

Q ss_pred             CCCccCChh-hhccccccEeecCCCCCc-ccCh-hhhcCccccee-ccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCC
Q 037371            1 LSLSKLPSG-ISNLVSLHHLDLSRTNIT-GLPQ-ELKALEKLRYL-NLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWS   76 (330)
Q Consensus         1 ~~l~~lp~~-l~~l~~L~~L~L~~~~~~-~lp~-~l~~l~~L~~L-~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~   76 (330)
                      |.++++|.. |+++++|++|+|++|.+. .+|. .+.++++++.+ .+++|.+ ..+++.++..+++|++|++++|++ .
T Consensus        40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l-~~l~~~~f~~l~~L~~L~l~~n~l-~  117 (350)
T 4ay9_X           40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGI-K  117 (350)
T ss_dssp             CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC-CEECTTSBCCCTTCCEEEEEEECC-S
T ss_pred             CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc-cccCchhhhhcccccccccccccc-c
Confidence            678999974 899999999999999986 5665 56789988764 4555656 666655699999999999999988 2


Q ss_pred             ccccccCccccCCchhhHHHhccCcCcceeeEEEec-hhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCc
Q 037371           77 VLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS-SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL  155 (330)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  155 (330)
                      .              ..........++..|.+..+. +..+.. .........++.|+++.+.  ..... .......+|
T Consensus       118 ~--------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~--i~~i~-~~~f~~~~L  179 (350)
T 4ay9_X          118 H--------------LPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNG--IQEIH-NSAFNGTQL  179 (350)
T ss_dssp             S--------------CCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSC--CCEEC-TTSSTTEEE
T ss_pred             c--------------CCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhcccccc--ccCCC-hhhccccch
Confidence            2              222233455566677776532 222111 0111223457777773333  23222 233345689


Q ss_pred             cEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEec-ccccccccccccccccc
Q 037371          156 QELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISE  233 (330)
Q Consensus       156 ~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~  233 (330)
                      ++|++. ++.++.+..+.+        ..+++|++|++++|.++.++. ..+.+|+.|.+.+ +.++.+ +         
T Consensus       180 ~~l~l~~~n~l~~i~~~~f--------~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~l-P---------  240 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVF--------HGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKL-P---------  240 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTT--------TTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCC-C---------
T ss_pred             hHHhhccCCcccCCCHHHh--------ccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcC-C---------
Confidence            999998 788887755443        678999999999998887764 3477888888877 667666 2         


Q ss_pred             cccCccccCcccceeeccc
Q 037371          234 IIGSEHNIFARLEYLTMWR  252 (330)
Q Consensus       234 ~~~~~~~~~~~L~~L~l~~  252 (330)
                          .+..|++|+.+++.+
T Consensus       241 ----~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 ----TLEKLVALMEASLTY  255 (350)
T ss_dssp             ----CTTTCCSCCEEECSC
T ss_pred             ----CchhCcChhhCcCCC
Confidence                567899999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=1.3e-15  Score=133.63  Aligned_cols=186  Identities=16%  Similarity=0.189  Sum_probs=128.6

Q ss_pred             ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371           14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL   93 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~   93 (330)
                      ..+..+.+..+.+..+. .+..+++|+.|++++|.+ ..++.  +..+++|++|++++|.+               ....
T Consensus        24 ~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~~~~--~~~l~~L~~L~L~~n~l---------------~~~~   84 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL---------------TDIK   84 (291)
T ss_dssp             HHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCC---------------CCCG
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcccEEEccCCCc-ccChh--HhcCCCCCEEEccCCcc---------------CCCc
Confidence            34455567777666542 356899999999999976 56665  88999999999999988               2222


Q ss_pred             HHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCc
Q 037371           94 MKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS  172 (330)
Q Consensus        94 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  172 (330)
                      +  +..+++|+.|++++|.+..+..+    ..+.+|+.|++ ++.-   ..  ...+..+++|+.|++++|.++.+  . 
T Consensus        85 ~--l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~L~~n~i---~~--~~~l~~l~~L~~L~l~~n~l~~~--~-  150 (291)
T 1h6t_A           85 P--LANLKNLGWLFLDENKVKDLSSL----KDLKKLKSLSLEHNGI---SD--INGLVHLPQLESLYLGNNKITDI--T-  150 (291)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCGGGG----TTCTTCCEEECTTSCC---CC--CGGGGGCTTCCEEECCSSCCCCC--G-
T ss_pred             c--cccCCCCCEEECCCCcCCCChhh----ccCCCCCEEECCCCcC---CC--ChhhcCCCCCCEEEccCCcCCcc--h-
Confidence            2  88999999999999876654432    33456777777 3322   22  24566777777777776666644  1 


Q ss_pred             ccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccc
Q 037371          173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWR  252 (330)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  252 (330)
                             ....+++|++|++++|.+..++.+..+++|+.|++++|.+.++ +             .+..+++|+.|++++
T Consensus       151 -------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l-~-------------~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          151 -------VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFS  209 (291)
T ss_dssp             -------GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEEEEE
T ss_pred             -------hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC-h-------------hhccCCCCCEEECcC
Confidence                   1245677777777777666665577777777777777777665 2             455677777777776


Q ss_pred             c
Q 037371          253 G  253 (330)
Q Consensus       253 ~  253 (330)
                      +
T Consensus       210 n  210 (291)
T 1h6t_A          210 Q  210 (291)
T ss_dssp             E
T ss_pred             C
Confidence            6

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=2.3e-15  Score=130.02  Aligned_cols=170  Identities=16%  Similarity=0.172  Sum_probs=104.9

Q ss_pred             ccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCch
Q 037371           12 NLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAE   91 (330)
Q Consensus        12 ~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   91 (330)
                      .+.++..++++++.+..++ .+..+++|++|++++|.+ ..++.  +..+++|++|++++|.+               ..
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~L~~N~i---------------~~   77 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAG--MQFFTNLKELHLSHNQI---------------SD   77 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCC---------------CC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchH--HhhCCCCCEEECCCCcc---------------CC
Confidence            4556677778887777776 567788888888888765 55663  77788888888888777               21


Q ss_pred             hhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371           92 PLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI  170 (330)
Q Consensus        92 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  170 (330)
                      ..+  +..+++|+.|++++|.+..+..+.   .  .+|+.|++ ++.-   ..  ...+..+++|+.|++++|+++.+. 
T Consensus        78 ~~~--l~~l~~L~~L~L~~N~l~~l~~~~---~--~~L~~L~L~~N~l---~~--~~~l~~l~~L~~L~Ls~N~i~~~~-  144 (263)
T 1xeu_A           78 LSP--LKDLTKLEELSVNRNRLKNLNGIP---S--ACLSRLFLDNNEL---RD--TDSLIHLKNLEILSIRNNKLKSIV-  144 (263)
T ss_dssp             CGG--GTTCSSCCEEECCSSCCSCCTTCC---C--SSCCEEECCSSCC---SB--SGGGTTCTTCCEEECTTSCCCBCG-
T ss_pred             Chh--hccCCCCCEEECCCCccCCcCccc---c--CcccEEEccCCcc---CC--ChhhcCcccccEEECCCCcCCCCh-
Confidence            112  777788888888777654432211   1  44555555 2211   11  124566666666666666665431 


Q ss_pred             CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371          171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                               ....+++|++|++++|.+..+..+..+++|+.|++++|.+...
T Consensus       145 ---------~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 ---------MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ---------GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             ---------HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence                     1244566666666666555555566666666666666655444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=4.5e-16  Score=149.58  Aligned_cols=235  Identities=15%  Similarity=0.078  Sum_probs=122.3

Q ss_pred             ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371           14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL   93 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~   93 (330)
                      ++|+.|+++++....+|..+..+++|++|++++|.+.......++..+++|++|++.++..               ....
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~---------------~~~l  334 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG---------------DRGL  334 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH---------------HHHH
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC---------------HHHH
Confidence            3333333333333344555555666666666666532222222345666666666653211               2223


Q ss_pred             HHHhccCcCcceeeEEE-----------echhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccc-ccCccEEEEE
Q 037371           94 MKELLGLKHLNVLSWSF-----------RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY-MENLQELELG  161 (330)
Q Consensus        94 ~~~l~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~  161 (330)
                      ......+++|++|++.+           +.... ..+......+++|++|++.+..  ........+.. +++|+.|+++
T Consensus       335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD--ITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC--CCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC--ccHHHHHHHHhhCCCCcEEEEe
Confidence            33334566666666662           22211 1111112234556666664444  33333334443 6667777775


Q ss_pred             ----ccCcceeeeCcccccCccCCCCCCCccEEEEecc-c-ccc--cCccc-ccCCccEEEEeccccccccccccccccc
Q 037371          162 ----SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-R-GKD--LTWLV-FVQNLKQLNMQGFTMEEIISVDKLSDIS  232 (330)
Q Consensus       162 ----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~-~~~--l~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~  232 (330)
                          ++.++....+..   .......+++|++|++++| + +.+  +..+. .+++|+.|+|+++.+.+....       
T Consensus       412 ~~~~~n~l~~~p~~~~---~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------  481 (592)
T 3ogk_B          412 LLDREERITDLPLDNG---VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM-------  481 (592)
T ss_dssp             ECSCCSCCSSCCCHHH---HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH-------
T ss_pred             ecCCCccccCchHHHH---HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH-------
Confidence                444443211100   0000134778888888766 2 333  22333 478899999988777653221       


Q ss_pred             ccccCccccCcccceeecccccccccc--cCCCCCCCCccEEEEccCCCCCC
Q 037371          233 EIIGSEHNIFARLEYLTMWRGTNVKSV--YPNPLPFPKLKKIQVFHCRQLKK  282 (330)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~i~~c~~L~~  282 (330)
                          .....+++|++|++++|. +...  ......+++|+.|++++|. ++.
T Consensus       482 ----~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          482 ----EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             ----HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             ----HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence                134668999999999996 4432  2112348999999999986 544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=1.8e-15  Score=125.93  Aligned_cols=59  Identities=22%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             cccEeecCCCCCcccChh-hhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371           15 SLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      +|++|++++|.+..+|.. +..+++|++|++++|.+ ..+|..++..+++|++|++++|.+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcC
Confidence            555555555555544432 34555555555555544 233333344555555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=1.5e-15  Score=131.29  Aligned_cols=166  Identities=13%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           35 ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        35 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                      .+.++..++++.+.+ ..++.  +.++++|++|++++|.+ +.               .+ .+..+++|+.|++++|.+.
T Consensus        17 ~l~~l~~l~l~~~~i-~~~~~--~~~l~~L~~L~l~~n~i-~~---------------l~-~l~~l~~L~~L~L~~N~i~   76 (263)
T 1xeu_A           17 GLANAVKQNLGKQSV-TDLVS--QKELSGVQNFNGDNSNI-QS---------------LA-GMQFFTNLKELHLSHNQIS   76 (263)
T ss_dssp             HHHHHHHHHHTCSCT-TSEEC--HHHHTTCSEEECTTSCC-CC---------------CT-TGGGCTTCCEEECCSSCCC
T ss_pred             HHHHHHHHHhcCCCc-ccccc--hhhcCcCcEEECcCCCc-cc---------------ch-HHhhCCCCCEEECCCCccC
Confidence            577788899998866 56663  78999999999999988 21               22 6888999999999988765


Q ss_pred             hHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEec
Q 037371          115 AVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRS  194 (330)
Q Consensus       115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  194 (330)
                      .+..    ...+..|+.|++..+.  ....  ..+.. ++|+.|++++|.++.+.          ....+++|++|++++
T Consensus        77 ~~~~----l~~l~~L~~L~L~~N~--l~~l--~~~~~-~~L~~L~L~~N~l~~~~----------~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           77 DLSP----LKDLTKLEELSVNRNR--LKNL--NGIPS-ACLSRLFLDNNELRDTD----------SLIHLKNLEILSIRN  137 (263)
T ss_dssp             CCGG----GTTCSSCCEEECCSSC--CSCC--TTCCC-SSCCEEECCSSCCSBSG----------GGTTCTTCCEEECTT
T ss_pred             CChh----hccCCCCCEEECCCCc--cCCc--Ccccc-CcccEEEccCCccCCCh----------hhcCcccccEEECCC
Confidence            5433    2234556666662211  1111  11222 66777777766665431          124566677777777


Q ss_pred             ccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371          195 CRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       195 ~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (330)
                      |.++.++.+..+++|+.|++++|.+.++ .             .+..+++|+.|+++++
T Consensus       138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~-------------~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          138 NKLKSIVMLGFLSKLEVLDLHGNEITNT-G-------------GLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             SCCCBCGGGGGCTTCCEEECTTSCCCBC-T-------------TSTTCCCCCEEEEEEE
T ss_pred             CcCCCChHHccCCCCCEEECCCCcCcch-H-------------HhccCCCCCEEeCCCC
Confidence            7666666666677777777777666655 2             4556667777776665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=3.7e-15  Score=123.05  Aligned_cols=150  Identities=17%  Similarity=0.181  Sum_probs=98.6

Q ss_pred             hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           34 KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        34 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                      ..+++|++|++++|.+ ..+| . +..+++|++|++++|.+                 ..+..+..+++|++|++++|.+
T Consensus        41 ~~l~~L~~L~l~~n~i-~~l~-~-l~~l~~L~~L~l~~n~~-----------------~~~~~l~~l~~L~~L~l~~n~l  100 (197)
T 4ezg_A           41 AQMNSLTYITLANINV-TDLT-G-IEYAHNIKDLTINNIHA-----------------TNYNPISGLSNLERLRIMGKDV  100 (197)
T ss_dssp             HHHHTCCEEEEESSCC-SCCT-T-GGGCTTCSEEEEESCCC-----------------SCCGGGTTCTTCCEEEEECTTC
T ss_pred             hhcCCccEEeccCCCc-cChH-H-HhcCCCCCEEEccCCCC-----------------CcchhhhcCCCCCEEEeECCcc
Confidence            5677777777777765 4556 3 67777777777777755                 1122566677777777766542


Q ss_pred             hhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe
Q 037371          114 LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR  193 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  193 (330)
                      .                            ......+..+++|++|++++|.++...+..        ...+++|++|+++
T Consensus       101 ~----------------------------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--------l~~l~~L~~L~L~  144 (197)
T 4ezg_A          101 T----------------------------SDKIPNLSGLTSLTLLDISHSAHDDSILTK--------INTLPKVNSIDLS  144 (197)
T ss_dssp             B----------------------------GGGSCCCTTCTTCCEEECCSSBCBGGGHHH--------HTTCSSCCEEECC
T ss_pred             C----------------------------cccChhhcCCCCCCEEEecCCccCcHhHHH--------HhhCCCCCEEEcc
Confidence            2                            122334667778888888876666432222        2567778888888


Q ss_pred             ccc-ccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371          194 SCR-GKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       194 ~~~-~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (330)
                      +|. +.+++.+..+++|+.|++++|.+.++.              .+..+++|+.|++.++
T Consensus       145 ~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--------------~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          145 YNGAITDIMPLKTLPELKSLNIQFDGVHDYR--------------GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             SCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--------------TGGGCSSCCEEEECBC
T ss_pred             CCCCccccHhhcCCCCCCEEECCCCCCcChH--------------HhccCCCCCEEEeeCc
Confidence            884 777777777888888888877776652              4556677777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=3.1e-15  Score=143.71  Aligned_cols=187  Identities=16%  Similarity=0.178  Sum_probs=145.1

Q ss_pred             ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371           14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL   93 (330)
Q Consensus        14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~   93 (330)
                      ..+..+.+..+.+..++ .+..+.+|+.|++++|.+ ..++.  +..+++|+.|++++|.+               ....
T Consensus        21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~Ls~N~l---------------~~~~   81 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL---------------TDIK   81 (605)
T ss_dssp             HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCC-CCCTT--GGGCTTCCEEECTTSCC---------------CCCG
T ss_pred             HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCC-CCChH--HccCCCCCEEEeeCCCC---------------CCCh
Confidence            44566677777777553 357899999999999976 66664  88999999999999988               2222


Q ss_pred             HHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCc
Q 037371           94 MKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS  172 (330)
Q Consensus        94 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  172 (330)
                      +  +..+++|+.|++++|.+..+..    ...+.+|+.|++ ++..   ..  ...+..+++|+.|+++.|.++.+  . 
T Consensus        82 ~--l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l---~~--l~~l~~l~~L~~L~Ls~N~l~~l--~-  147 (605)
T 1m9s_A           82 P--LTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLEHNGI---SD--INGLVHLPQLESLYLGNNKITDI--T-  147 (605)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCTT----STTCTTCCEEECTTSCC---CC--CGGGGGCTTCSEEECCSSCCCCC--G-
T ss_pred             h--hccCCCCCEEECcCCCCCCChh----hccCCCCCEEEecCCCC---CC--CccccCCCccCEEECCCCccCCc--h-
Confidence            2  8899999999999998765442    344667888888 4332   22  34688899999999998887754  1 


Q ss_pred             ccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccc
Q 037371          173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWR  252 (330)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  252 (330)
                             ....+++|+.|+|++|.+..+..+..+++|+.|+|++|.+.++ +             .+..+++|+.|++++
T Consensus       148 -------~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~-------------~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          148 -------VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFS  206 (605)
T ss_dssp             -------GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEECCS
T ss_pred             -------hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-h-------------HHccCCCCCEEEccC
Confidence                   2357889999999999887776688999999999999988876 3             567789999999998


Q ss_pred             cc
Q 037371          253 GT  254 (330)
Q Consensus       253 ~~  254 (330)
                      ++
T Consensus       207 N~  208 (605)
T 1m9s_A          207 QE  208 (605)
T ss_dssp             EE
T ss_pred             Cc
Confidence            73

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.54  E-value=1.1e-15  Score=138.21  Aligned_cols=231  Identities=11%  Similarity=0.066  Sum_probs=150.4

Q ss_pred             CCCccCC-----hhhhccc-cccEeecCCCCCccc-ChhhhcC-----cccceeccCCCCCCCCCchh---hhCCC-CCC
Q 037371            1 LSLSKLP-----SGISNLV-SLHHLDLSRTNITGL-PQELKAL-----EKLRYLNLDHTRFLSIIPPQ---LISGF-SKL   64 (330)
Q Consensus         1 ~~l~~lp-----~~l~~l~-~L~~L~L~~~~~~~l-p~~l~~l-----~~L~~L~l~~~~~~~~~p~~---~~~~l-~~L   64 (330)
                      |.+...+     +.+..++ +|++|++++|.+... +..+..+     ++|++|++++|.+....+..   ++..+ ++|
T Consensus        32 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L  111 (362)
T 3goz_A           32 NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI  111 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCc
Confidence            3455555     5678888 999999999999854 4456554     99999999999875555543   13444 899


Q ss_pred             cEEEeccCCCCCccccccCccccCCchhhHHHhccC-cCcceeeEEEechhh--HHHhhcccccc-CceEEEEE-EeCCC
Q 037371           65 EVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGL-KHLNVLSWSFRSSLA--VQKFLKYPKLV-SITQSVWV-ECGTY  139 (330)
Q Consensus        65 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~~~~~~~~~-~~L~~L~l-~~~~~  139 (330)
                      ++|++++|.+ +.   .       ....+...+..+ ++|++|++++|.+..  ...+....... ..|++|++ ++.- 
T Consensus       112 ~~L~Ls~N~l-~~---~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-  179 (362)
T 3goz_A          112 TVLDLGWNDF-SS---K-------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-  179 (362)
T ss_dssp             CEEECCSSCG-GG---S-------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-
T ss_pred             cEEECcCCcC-Cc---H-------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-
Confidence            9999999998 22   0       022233445553 699999999997753  22332222222 37999999 4432 


Q ss_pred             CCCCcccc----ccccc-cCccEEEEEccCcceeeeCcccccCccCCCC-CCCccEEEEecccccccC------cccccC
Q 037371          140 TRPPFNVL----HLAYM-ENLQELELGSSKLEEMKIDSTEEVKKLFRNG-FRSLNTVVLRSCRGKDLT------WLVFVQ  207 (330)
Q Consensus       140 ~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~l~------~l~~l~  207 (330)
                        ......    .+... ++|+.|++++|.+++......    ...... .++|++|+|++|.+.+..      .+..++
T Consensus       180 --~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l----~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          180 --ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL----AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             --GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH----HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             --chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH----HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence              222222    34455 599999999888875322211    000112 368999999999776643      346789


Q ss_pred             CccEEEEecccccccccccccccccccccCccccCcccceeeccccc
Q 037371          208 NLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       208 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                      +|+.|++++|.+..+..... ..+.    ..+..+++|+.|+++++.
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~-~~l~----~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQC-KALG----AAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHH-HHHH----TTSTTCCEEEEECTTSCB
T ss_pred             CccEEEeccCCccccCHHHH-HHHH----HHhccCCceEEEecCCCc
Confidence            99999999988555533100 0011    155678889999998873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=1.1e-14  Score=122.27  Aligned_cols=155  Identities=18%  Similarity=0.258  Sum_probs=102.8

Q ss_pred             hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      +.|. -+.++.++++++.+|..+.  ++|+.|++++|.+ ..++...+..+++|++|++++|.+               .
T Consensus         9 C~C~-~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i---------------~   69 (220)
T 2v9t_B            9 CTCS-NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQI---------------S   69 (220)
T ss_dssp             SEEE-TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCC---------------C
T ss_pred             CEEC-CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcC---------------C
Confidence            4443 3677888888888877554  5788888888866 455544477888888888888877               3


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI  170 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  170 (330)
                      ...+..+..+++|+.|++++|.+..                            .....+..+++|+.|+++.|.++.+.+
T Consensus        70 ~~~~~~~~~l~~L~~L~Ls~N~l~~----------------------------l~~~~f~~l~~L~~L~L~~N~l~~~~~  121 (220)
T 2v9t_B           70 ELAPDAFQGLRSLNSLVLYGNKITE----------------------------LPKSLFEGLFSLQLLLLNANKINCLRV  121 (220)
T ss_dssp             EECTTTTTTCSSCCEEECCSSCCCC----------------------------CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCHHHhhCCcCCCEEECCCCcCCc----------------------------cCHhHccCCCCCCEEECCCCCCCEeCH
Confidence            3445667778888888877665321                            112235666777777777766665543


Q ss_pred             CcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371          171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME  220 (330)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~  220 (330)
                      ..+        ..+++|++|+|++|.+..++  .+..+++|+.|+|++|.+.
T Consensus       122 ~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          122 DAF--------QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTT--------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HHc--------CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            332        55677777777777655544  3666777777777776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=1.7e-14  Score=121.20  Aligned_cols=145  Identities=20%  Similarity=0.279  Sum_probs=108.9

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      +++.++|..+.  ++|++|++++|.+..+|. .+..+++|++|++++|.+....|.. +.++++|++|++++|.+     
T Consensus        21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l-----   92 (220)
T 2v9t_B           21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKI-----   92 (220)
T ss_dssp             SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSCC-----
T ss_pred             CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCcC-----
Confidence            45778887765  689999999999987766 6788999999999999875444554 88999999999999888     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                .......+..+++|+.|++++|.+.                            ......+..+++|+.|+
T Consensus        93 ----------~~l~~~~f~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           93 ----------TELPKSLFEGLFSLQLLLLNANKIN----------------------------CLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             ----------CCCCTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEE
T ss_pred             ----------CccCHhHccCCCCCCEEECCCCCCC----------------------------EeCHHHcCCCCCCCEEE
Confidence                      2223334677888888888776522                            22234577888999999


Q ss_pred             EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371          160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD  199 (330)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  199 (330)
                      ++.|.++.+....+        ..+++|++|++++|.+..
T Consensus       135 L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          135 LYDNKLQTIAKGTF--------SPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCSCCCTTTT--------TTCTTCCEEECCSSCEEC
T ss_pred             CCCCcCCEECHHHH--------hCCCCCCEEEeCCCCcCC
Confidence            99888886654433        567889999999985543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=1.1e-16  Score=149.13  Aligned_cols=260  Identities=17%  Similarity=0.143  Sum_probs=145.8

Q ss_pred             cCChhhhccccccEeecCCCCCcc-cChhh-hcCc----ccceeccCCCCCCC----CCchhhhCCCCCCcEEEeccCCC
Q 037371            5 KLPSGISNLVSLHHLDLSRTNITG-LPQEL-KALE----KLRYLNLDHTRFLS----IIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~~-lp~~l-~~l~----~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      .+|..+..+++|++|++++|.+.. .+..+ ..+.    +|++|++++|.+..    .++.. +..+++|++|++++|.+
T Consensus        47 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           47 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBC
T ss_pred             HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcC
Confidence            445567777788888888877662 22222 3344    57777777776542    23443 67777777777777765


Q ss_pred             CCcc----------------ccccCc---cccCCchhhHHHhccCcCcceeeEEEechhh--HHHhhccc-cccCceEEE
Q 037371           75 WSVL----------------EEEEGS---VLCDDAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKYP-KLVSITQSV  132 (330)
Q Consensus        75 ~~~~----------------~~~~~~---~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~-~~~~~L~~L  132 (330)
                       +..                +.+.-+   ........++..+..+++|++|++++|.+..  ...+.... .....|++|
T Consensus       126 -~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L  204 (461)
T 1z7x_W          126 -GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL  204 (461)
T ss_dssp             -HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             -chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence             110                000000   0000011234556666777777777776533  12222111 113357777


Q ss_pred             EE-EeCCCCCCCc----cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc-----c-C
Q 037371          133 WV-ECGTYTRPPF----NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD-----L-T  201 (330)
Q Consensus       133 ~l-~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l-~  201 (330)
                      ++ ++.-   ...    ....+..+++|++|+++++.+++......   .......+++|++|++++|.++.     + .
T Consensus       205 ~L~~n~l---~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l---~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          205 KLESCGV---TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL---CPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             ECTTSCC---BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH---HHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             EccCCCC---cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH---HHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            77 4432   221    12345677888888888666654322111   01112347889999999996655     2 2


Q ss_pred             cccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccccccccc-----CCCCCCCCccEEEEcc
Q 037371          202 WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVY-----PNPLPFPKLKKIQVFH  276 (330)
Q Consensus       202 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~~~~~~~~L~~L~i~~  276 (330)
                      .+..+++|++|++++|.+.+.+......       ......++|++|++++|. +....     .....+++|++|++++
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCE-------TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHH-------HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHH-------HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccC
Confidence            4667899999999988876553310000       012234699999999884 44321     1122368999999999


Q ss_pred             CCCCC
Q 037371          277 CRQLK  281 (330)
Q Consensus       277 c~~L~  281 (330)
                      | .+.
T Consensus       351 n-~i~  354 (461)
T 1z7x_W          351 N-RLE  354 (461)
T ss_dssp             S-BCH
T ss_pred             C-ccc
Confidence            7 444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=2.2e-14  Score=119.33  Aligned_cols=149  Identities=15%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      -+.++.+++++..+|..+  .++|++|++++|.+ ..++..+++++++|++|++++|.+               ......
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l---------------~~~~~~   70 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKL---------------QSLPNG   70 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC---------------CCCCTT
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCcc---------------CccChh
Confidence            467888888888888755  46899999999987 456655588999999999999888               222333


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      .+..+++|++|++++|.+.                            ......+..+++|++|+++.|.++.+....   
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---  119 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQ----------------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGV---  119 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred             hcCCCCCcCEEECCCCcCC----------------------------ccCHhHhcCccCCCEEEcCCCcCcccCHhH---
Confidence            4567777777777765422                            111223455666666666655555432221   


Q ss_pred             cCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFT  218 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~  218 (330)
                           ...+++|++|++++|.+..++  .+..+++|+.|++++|.
T Consensus       120 -----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          120 -----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             -----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             -----hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence                 234556666666666444433  24556666666666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=1.5e-14  Score=130.81  Aligned_cols=153  Identities=14%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             cEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhC-CCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           17 HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS-GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        17 ~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      ++++++++++..+|..+.  ..++.|++++|.+ ..++...+. ++++|++|++++|.+               ....+.
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i---------------~~i~~~   82 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL---------------NFISSE   82 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCC---------------CEECTT
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcC---------------CccChh
Confidence            567777777777776443  3467777777765 444443355 677777777777766               223334


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      .+..+++|+.|++++|.+..+                            ....+..+++|+.|+++.|.++.+.+..+  
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~~----------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--  132 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSNHLHTL----------------------------DEFLFSDLQALEVLLLYNNHIVVVDRNAF--  132 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEE----------------------------CTTTTTTCTTCCEEECCSSCCCEECTTTT--
T ss_pred             hccCCCCCCEEECCCCcCCcC----------------------------CHHHhCCCcCCCEEECCCCcccEECHHHh--
Confidence            566677777777766543211                            11234455555555555555554432222  


Q ss_pred             cCccCCCCCCCccEEEEecccccccCc--c---cccCCccEEEEecccccccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKDLTW--L---VFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~l~~--l---~~l~~L~~L~L~~~~l~~~~  223 (330)
                            ..+++|++|+|++|.+..++.  +   ..+++|+.|+|++|.+..++
T Consensus       133 ------~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          133 ------EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             ------TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             ------CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence                  445555555555554444331  2   34555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=1e-14  Score=131.82  Aligned_cols=169  Identities=22%  Similarity=0.205  Sum_probs=125.3

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChh-hh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~-l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      +++.++|..+.  ..+++|+|++|.++.++.. +. .+++|++|++++|.+ ..++...+.++++|++|++++|.+    
T Consensus        28 ~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l----  100 (361)
T 2xot_A           28 QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHL----  100 (361)
T ss_dssp             SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCC----
T ss_pred             CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCcC----
Confidence            46788998776  4689999999999988765 45 899999999999987 555554599999999999999998    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 .......+..+++|+.|++++|.+.                            ......+..+++|+.|
T Consensus       101 -----------~~~~~~~~~~l~~L~~L~L~~N~i~----------------------------~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A          101 -----------HTLDEFLFSDLQALEVLLLYNNHIV----------------------------VVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             -----------CEECTTTTTTCTTCCEEECCSSCCC----------------------------EECTTTTTTCTTCCEE
T ss_pred             -----------CcCCHHHhCCCcCCCEEECCCCccc----------------------------EECHHHhCCcccCCEE
Confidence                       3344456788999999999877532                            1122456778888888


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCC--ccEEEEeccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQN--LKQLNMQGFTME  220 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~--L~~L~L~~~~l~  220 (330)
                      ++++|.++.+....+.     ....+++|+.|+|++|.+..++  .+..+++  |+.|+|++|.+.
T Consensus       142 ~L~~N~l~~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          142 YLSQNQISRFPVELIK-----DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ECCSSCCCSCCGGGTC---------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ECCCCcCCeeCHHHhc-----CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            8888888765433220     0135788899999888777665  4666776  478888887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=4.1e-14  Score=119.57  Aligned_cols=150  Identities=16%  Similarity=0.156  Sum_probs=75.4

Q ss_pred             ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      ...++.+++++..+|..+.  ++|++|++++|.+.+..|.. +..+++|++|++++|.+               ......
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l---------------~~i~~~   82 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQL---------------GALPVG   82 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCC---------------CCCCTT
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCC---------------CCcChh
Confidence            3455666666666655432  55666666666554333332 55666666666666655               112223


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      .+..+++|+.|++++|.+.                            ......+..+++|+.|++++|.++.+...    
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~----------------------------~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~----  130 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTNQLT----------------------------VLPSAVFDRLVHLKELFMCCNKLTELPRG----  130 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCSCCTT----
T ss_pred             hcccCCCcCEEECCCCcCC----------------------------ccChhHhCcchhhCeEeccCCcccccCcc----
Confidence            3455566666665554321                            11112244555555555555555433111    


Q ss_pred             cCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME  220 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~  220 (330)
                           ...+++|++|++++|.+..++  .+..+++|+.|++++|.+.
T Consensus       131 -----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          131 -----IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             -----GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             -----cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence                 134555566666555444433  2455566666666655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.51  E-value=3e-14  Score=119.69  Aligned_cols=157  Identities=14%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      +.|. -++++++++.++.+|..+.  ..+++|++++|.+.+..+..++.++++|++|++++|.+               .
T Consensus         9 C~C~-~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i---------------~   70 (220)
T 2v70_A            9 CRCE-GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---------------T   70 (220)
T ss_dssp             CEEE-TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---------------C
T ss_pred             CEEC-CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---------------C
Confidence            4443 3688888888888887553  34678888888774443544577888888888888887               3


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI  170 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  170 (330)
                      ...+..+..+++|++|++++|.+.                            ......+..+++|++|+++.|.++.+.+
T Consensus        71 ~i~~~~~~~l~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           71 DIEEGAFEGASGVNEILLTSNRLE----------------------------NVQHKMFKGLESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCC----------------------------CCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred             EECHHHhCCCCCCCEEECCCCccC----------------------------ccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence            334456777888888888766522                            2222346677788888888777775543


Q ss_pred             CcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccc
Q 037371          171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEE  221 (330)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~  221 (330)
                      ..+        ..+++|++|+|++|.+..+  ..+..+++|+.|+|++|.+..
T Consensus       123 ~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          123 DSF--------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSS--------TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             hHc--------CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            332        5677788888888866554  357778888888888876653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=2.1e-14  Score=136.75  Aligned_cols=175  Identities=14%  Similarity=0.124  Sum_probs=116.6

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      +|++|++++|+++.+|..+  +++|++|++++|.+ ..+|    ..+++|++|++++|.+ +.               ++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-~~ip----~~l~~L~~L~Ls~N~l-~~---------------ip  116 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-ISLP----ELPASLEYLDACDNRL-ST---------------LP  116 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-SCCC----CCCTTCCEEECCSSCC-SC---------------CC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-cccc----cccCCCCEEEccCCCC-CC---------------cc
Confidence            8999999999988888866  37899999999977 4677    3478899999999888 21               22


Q ss_pred             HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371           95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE  174 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  174 (330)
                      . +..  +|+.|++++|.+..++.      .+.+|+.|++..+.  ....  ..  .+++|+.|++++|.++.+..  + 
T Consensus       117 ~-l~~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~--l~~l--p~--~l~~L~~L~Ls~N~L~~lp~--l-  178 (571)
T 3cvr_A          117 E-LPA--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQ--LTML--PE--LPTSLEVLSVRNNQLTFLPE--L-  178 (571)
T ss_dssp             C-CCT--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSC--CSCC--CC--CCTTCCEEECCSSCCSCCCC--C-
T ss_pred             h-hhc--CCCEEECCCCcCCCCCC------cCccccEEeCCCCc--cCcC--CC--cCCCcCEEECCCCCCCCcch--h-
Confidence            2 333  88888888887654332      34567777772222  1221  11  45677788877777665321  1 


Q ss_pred             ccCccCCCCCCCccEEEEecccccccCcccccCCc-------cEEEEecccccccccccccccccccccCccccCcccce
Q 037371          175 EVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNL-------KQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY  247 (330)
Q Consensus       175 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L-------~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  247 (330)
                             .  ++|+.|+|++|.++.++.+..  +|       +.|+|++|.+..++.             .+..+++|+.
T Consensus       179 -------~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-------------~l~~l~~L~~  234 (571)
T 3cvr_A          179 -------P--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE-------------NILSLDPTCT  234 (571)
T ss_dssp             -------C--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG-------------GGGGSCTTEE
T ss_pred             -------h--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH-------------HHhcCCCCCE
Confidence                   1  677788887776666555332  55       777887777776644             4445777777


Q ss_pred             eeccccc
Q 037371          248 LTMWRGT  254 (330)
Q Consensus       248 L~l~~~~  254 (330)
                      |++++++
T Consensus       235 L~L~~N~  241 (571)
T 3cvr_A          235 IILEDNP  241 (571)
T ss_dssp             EECCSSS
T ss_pred             EEeeCCc
Confidence            7777763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.50  E-value=3.4e-14  Score=119.38  Aligned_cols=145  Identities=20%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.++++|..+.  ..+++|++++|.++.++.  .+..+++|++|++++|.+ ..++...+.++++|++|++++|.+    
T Consensus        21 n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l----   93 (220)
T 2v70_A           21 QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL----   93 (220)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCC----
T ss_pred             CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECCCCcc----
Confidence            46778887765  356899999998887632  478899999999999877 445544488899999999999888    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 ....+..+..+++|++|++++|.+                            .......+..+++|+.|
T Consensus        94 -----------~~~~~~~~~~l~~L~~L~Ls~N~l----------------------------~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           94 -----------ENVQHKMFKGLESLKTLMLRSNRI----------------------------TCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             -----------CCCCGGGGTTCSSCCEEECTTSCC----------------------------CCBCTTSSTTCTTCSEE
T ss_pred             -----------CccCHhHhcCCcCCCEEECCCCcC----------------------------CeECHhHcCCCccCCEE
Confidence                       334455677888888888776642                            22223456788889999


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD  199 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  199 (330)
                      +++.|.++.+.+..+        ..+++|++|++++|.+..
T Consensus       135 ~L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          135 SLYDNQITTVAPGAF--------DTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ECTTSCCCCBCTTTT--------TTCTTCCEEECCSCCEEC
T ss_pred             ECCCCcCCEECHHHh--------cCCCCCCEEEecCcCCcC
Confidence            999888886654443        567889999999885543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.49  E-value=2.4e-14  Score=137.52  Aligned_cols=231  Identities=14%  Similarity=0.075  Sum_probs=136.2

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCC--------------------------CCCCchhhhCCCCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRF--------------------------LSIIPPQLISGFSK   63 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~--------------------------~~~~p~~~~~~l~~   63 (330)
                      +.++++|++|++++|.+..+|..+..+++|++|+++....                          ...+|. ++..+++
T Consensus       216 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~  294 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQ  294 (592)
T ss_dssp             HHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGG
T ss_pred             HhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCC
Confidence            4455566666666655555555555555555555542110                          122333 2556677


Q ss_pred             CcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEE--------
Q 037371           64 LEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVE--------  135 (330)
Q Consensus        64 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~--------  135 (330)
                      |++|++++|.+ +             .......+..+++|++|++.. .... ..+......+.+|++|++.        
T Consensus       295 L~~L~Ls~~~l-~-------------~~~~~~~~~~~~~L~~L~L~~-~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~  358 (592)
T 3ogk_B          295 IRKLDLLYALL-E-------------TEDHCTLIQKCPNLEVLETRN-VIGD-RGLEVLAQYCKQLKRLRIERGADEQGM  358 (592)
T ss_dssp             CCEEEETTCCC-C-------------HHHHHHHHTTCTTCCEEEEEG-GGHH-HHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred             CcEEecCCCcC-C-------------HHHHHHHHHhCcCCCEEeccC-ccCH-HHHHHHHHhCCCCCEEEeecCcccccc
Confidence            77777777765 1             223335577888899888883 2221 2222222346678999984        


Q ss_pred             ---eCCCCCCCccccc-cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEec---c-cccccC------
Q 037371          136 ---CGTYTRPPFNVLH-LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRS---C-RGKDLT------  201 (330)
Q Consensus       136 ---~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~---~-~~~~l~------  201 (330)
                         |..  ........ ...+++|++|+++++.++.......       ...+++|++|++.+   | .+++.+      
T Consensus       359 ~~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-------~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~  429 (592)
T 3ogk_B          359 EDEEGL--VSQRGLIALAQGCQELEYMAVYVSDITNESLESI-------GTYLKNLCDFRLVLLDREERITDLPLDNGVR  429 (592)
T ss_dssp             SSTTCC--CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-------HHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred             ccccCc--cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-------HhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence               444  23222222 4568899999998887765433222       12377899999974   3 555421      


Q ss_pred             -cccccCCccEEEEecc--cccccccccccccccccccCccccCcccceeeccccccccc--ccCCCCCCCCccEEEEcc
Q 037371          202 -WLVFVQNLKQLNMQGF--TMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKS--VYPNPLPFPKLKKIQVFH  276 (330)
Q Consensus       202 -~l~~l~~L~~L~L~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~i~~  276 (330)
                       .+.++++|+.|+++++  .+.+....           .....+++|++|++++|. +.+  +......+++|++|++++
T Consensus       430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~-----------~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          430 SLLIGCKKLRRFAFYLRQGGLTDLGLS-----------YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             HHHHHCTTCCEEEEECCGGGCCHHHHH-----------HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEES
T ss_pred             HHHHhCCCCCEEEEecCCCCccHHHHH-----------HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccC
Confidence             2556999999999752  23332221           022347899999999884 443  122234589999999999


Q ss_pred             CC
Q 037371          277 CR  278 (330)
Q Consensus       277 c~  278 (330)
                      |+
T Consensus       498 n~  499 (592)
T 3ogk_B          498 CC  499 (592)
T ss_dssp             CC
T ss_pred             CC
Confidence            97

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=1.6e-15  Score=145.84  Aligned_cols=218  Identities=15%  Similarity=0.072  Sum_probs=114.0

Q ss_pred             ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceee
Q 037371           28 GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLS  107 (330)
Q Consensus        28 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  107 (330)
                      .+|..+..+++|++|++++|.+.......++..+++|++|++++| + +             ..........+++|++|+
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~-~-------------~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-I-E-------------DAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-G-H-------------HHHHHHHHHHCTTCCEEE
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-c-C-------------HHHHHHHHHhCCCCCEEE
Confidence            344444456777777777765432222333556777777777765 3 0             112222333467777776


Q ss_pred             EEE---------echhhHHHhhccccccCceEEEEEEeCCCCCCCccccccc-cccCccEEEEE--c----cCcceeeeC
Q 037371          108 WSF---------RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA-YMENLQELELG--S----SKLEEMKID  171 (330)
Q Consensus       108 l~~---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~~~~~~~~  171 (330)
                      +.+         +.+.. ..+......+++|++|.+.+..  ........+. .+++|+.|+++  .    +.++....+
T Consensus       345 L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~--l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  421 (594)
T 2p1m_B          345 VFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQ--MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD  421 (594)
T ss_dssp             EECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEEEESC--CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred             EecCcccccccCCCCCH-HHHHHHHHhchhHHHHHHhcCC--cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence            633         11111 1111111224557777555554  3333333343 46777777776  2    333322110


Q ss_pred             cccccCccCCCCCCCccEEEEecccccc--cCcccc-cCCccEEEEecccccccccccccccccccccCccccCccccee
Q 037371          172 STEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVF-VQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYL  248 (330)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  248 (330)
                      ..   -......+++|++|+++++ +.+  +..+.. +++|+.|+|+++.+.+.+..           .....+++|++|
T Consensus       422 ~~---~~~l~~~~~~L~~L~L~~~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L  486 (594)
T 2p1m_B          422 IG---FGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKL  486 (594)
T ss_dssp             HH---HHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEE
T ss_pred             hH---HHHHHhhCCCccEEeecCc-ccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEE
Confidence            00   0000134567777777663 222  333444 77888888887766544221           012457888888


Q ss_pred             ecccccccccccC--CCCCCCCccEEEEccCCC
Q 037371          249 TMWRGTNVKSVYP--NPLPFPKLKKIQVFHCRQ  279 (330)
Q Consensus       249 ~l~~~~~l~~l~~--~~~~~~~L~~L~i~~c~~  279 (330)
                      ++++|.. .+...  ....+++|+.|++.+|+.
T Consensus       487 ~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          487 EIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             ECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            8888854 33221  223478888898888864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=3.3e-13  Score=113.98  Aligned_cols=150  Identities=13%  Similarity=0.135  Sum_probs=116.8

Q ss_pred             ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH
Q 037371           38 KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ  117 (330)
Q Consensus        38 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  117 (330)
                      ..+.++.+++.+ +.+|.. +  .++|++|++++|.+               ....+..+..+++|++|++++|.+.   
T Consensus        20 s~~~v~c~~~~l-~~ip~~-~--~~~L~~L~Ls~n~i---------------~~~~~~~~~~l~~L~~L~L~~N~l~---   77 (229)
T 3e6j_A           20 SGTTVDCRSKRH-ASVPAG-I--PTNAQILYLHDNQI---------------TKLEPGVFDSLINLKELYLGSNQLG---   77 (229)
T ss_dssp             ETTEEECTTSCC-SSCCSC-C--CTTCSEEECCSSCC---------------CCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred             eCCEeEccCCCc-CccCCC-C--CCCCCEEEcCCCcc---------------CccCHHHhhCccCCcEEECCCCCCC---
Confidence            467788888765 778875 3  38899999999998               4345667888899999998876521   


Q ss_pred             HhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccc
Q 037371          118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRG  197 (330)
Q Consensus       118 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  197 (330)
                                               ......+..+++|+.|++++|.++.+....+        ..+++|++|++++|.+
T Consensus        78 -------------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--------~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           78 -------------------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF--------DRLVHLKELFMCCNKL  124 (229)
T ss_dssp             -------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCTTCCEEECCSSCC
T ss_pred             -------------------------CcChhhcccCCCcCEEECCCCcCCccChhHh--------CcchhhCeEeccCCcc
Confidence                                     1222356788999999999888886644332        5789999999999977


Q ss_pred             cccC-cccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc
Q 037371          198 KDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT  254 (330)
Q Consensus       198 ~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (330)
                      ..++ .+..+++|+.|+|++|.+..+.+            ..+..+++|+.|++.+++
T Consensus       125 ~~lp~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          125 TELPRGIERLTHLTHLALDQNQLKSIPH------------GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CSCCTTGGGCTTCSEEECCSSCCCCCCT------------TTTTTCTTCCEEECTTSC
T ss_pred             cccCcccccCCCCCEEECCCCcCCccCH------------HHHhCCCCCCEEEeeCCC
Confidence            7765 67889999999999999988865            267788999999998774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.48  E-value=6.4e-14  Score=135.29  Aligned_cols=205  Identities=20%  Similarity=0.176  Sum_probs=135.1

Q ss_pred             hhhccccccEeecCCCCCc---ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371            9 GISNLVSLHHLDLSRTNIT---GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV   85 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~---~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   85 (330)
                      ....++.|++|+++.|.+.   ..+.....+.+|+++++..+.. ...+.. +..+++|+.+++..+...          
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~-~~~l~~L~~l~l~~~~~~----------  433 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSN-FLGLEQLEHLDFQHSNLK----------  433 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSC-CTTCTTCCEEECTTSEEE----------
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhcccccc-cccccc-ccccccccchhhhhcccc----------
Confidence            4557899999999999876   4567788899999999998865 334444 788999999999887651          


Q ss_pred             ccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccC
Q 037371           86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSK  164 (330)
Q Consensus        86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  164 (330)
                          .......+..+.+++.++++.|......  .........++.|++ +...  ........+..+++|+.|++++|+
T Consensus       434 ----~~~~~~~~~~l~~l~~l~ls~n~l~~~~--~~~~~~~~~L~~L~Ls~N~~--~~~~~~~~~~~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          434 ----QMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSF--QENFLPDIFTELRNLTFLDLSQCQ  505 (635)
T ss_dssp             ----STTSSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEE--GGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ----cccccccccccccccccccccccccccc--ccccccchhhhhhhhhhccc--ccccCchhhhhccccCEEECCCCc
Confidence                1122344667888888888776543221  112233445666666 3221  122233456677777777777777


Q ss_pred             cceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccC
Q 037371          165 LEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIF  242 (330)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      ++.+.+..+        ..+++|++|+|++|.+..++  .+.++++|++|+|++|.+..+.+.            .+..+
T Consensus       506 L~~l~~~~f--------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~l  565 (635)
T 4g8a_A          506 LEQLSPTAF--------NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ------------ELQHF  565 (635)
T ss_dssp             CCEECTTTT--------TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS------------CTTCC
T ss_pred             cCCcChHHH--------cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH------------HHHhh
Confidence            776644433        56677777777777665543  466777777777777777776552            44444


Q ss_pred             -cccceeecccc
Q 037371          243 -ARLEYLTMWRG  253 (330)
Q Consensus       243 -~~L~~L~l~~~  253 (330)
                       ++|++|+++++
T Consensus       566 ~~~L~~L~L~~N  577 (635)
T 4g8a_A          566 PSSLAFLNLTQN  577 (635)
T ss_dssp             CTTCCEEECTTC
T ss_pred             hCcCCEEEeeCC
Confidence             46777777754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=2.1e-16  Score=150.86  Aligned_cols=208  Identities=14%  Similarity=0.085  Sum_probs=131.3

Q ss_pred             hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      ..+++|+.|+|++|.+..+|..++++++|+.|++++|.....+|.. +           ..+..               .
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-l-----------~~~~~---------------~  398 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-M-----------RALDP---------------L  398 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-H-----------HHHCT---------------G
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH-H-----------Hhccc---------------c
Confidence            4566777777877777777777777778887777554210111110 0           00001               2


Q ss_pred             hhhHHHhccCcCcceee-EEEechhhHHH-------hhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEc
Q 037371           91 EPLMKELLGLKHLNVLS-WSFRSSLAVQK-------FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGS  162 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~-l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (330)
                      +..+..++.+++|+.|+ ++.+....+..       +...  ....|+.|++..+.  ...  ...+..+++|+.|++++
T Consensus       399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~--l~~--lp~~~~l~~L~~L~Ls~  472 (567)
T 1dce_A          399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKD--LTV--LCHLEQLLLVTHLDLSH  472 (567)
T ss_dssp             GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSC--CSS--CCCGGGGTTCCEEECCS
T ss_pred             cCCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCC--CCC--CcCccccccCcEeecCc
Confidence            23444555555555555 33332222211       1100  01236777772222  233  22488999999999998


Q ss_pred             cCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc-cccccccccccccCcccc
Q 037371          163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII-SVDKLSDISEIIGSEHNI  241 (330)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~-~~~~~~~~~~~~~~~~~~  241 (330)
                      |.++.++. .        .+.+++|+.|+|++|.++.++.++++++|+.|+|++|.+..+. +            ..++.
T Consensus       473 N~l~~lp~-~--------~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p------------~~l~~  531 (567)
T 1dce_A          473 NRLRALPP-A--------LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI------------QPLVS  531 (567)
T ss_dssp             SCCCCCCG-G--------GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT------------GGGGG
T ss_pred             ccccccch-h--------hhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc------------HHHhc
Confidence            88885532 2        3678999999999998888888899999999999999998884 4            27788


Q ss_pred             CcccceeecccccccccccCCCC----CCCCccEEE
Q 037371          242 FARLEYLTMWRGTNVKSVYPNPL----PFPKLKKIQ  273 (330)
Q Consensus       242 ~~~L~~L~l~~~~~l~~l~~~~~----~~~~L~~L~  273 (330)
                      +++|+.|+++++ .+..++....    .+|+|+.|+
T Consensus       532 l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          532 CPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence            999999999988 5665544332    278888874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=1.1e-13  Score=131.72  Aligned_cols=178  Identities=16%  Similarity=0.184  Sum_probs=131.6

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |+++.+|..+.  ++|++|++++|.++.+|   ..+++|++|++++|.+. .+|.  +.+  +|++|++++|.+ +    
T Consensus        69 n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~Ls~N~l-~----  133 (571)
T 3cvr_A           69 LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLDVDNNQL-T----  133 (571)
T ss_dssp             SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEECCSSCC-S----
T ss_pred             CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEECCCCcC-C----
Confidence            46778998774  79999999999999999   56899999999999885 4777  554  999999999988 2    


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                                . ++.   .+++|+.|++++|.+..++.      ...+|+.|++..+.  ..... . +.  ++|+.|++
T Consensus       134 ----------~-lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~--L~~lp-~-l~--~~L~~L~L  187 (571)
T 3cvr_A          134 ----------M-LPE---LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQ--LTFLP-E-LP--ESLEALDV  187 (571)
T ss_dssp             ----------C-CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC--CSCCC-C-CC--TTCCEEEC
T ss_pred             ----------C-CCC---cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCC--CCCcc-h-hh--CCCCEEEC
Confidence                      2 222   68899999999998765332      45679999983222  23322 2 44  89999999


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccccccc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIIS  224 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~  224 (330)
                      ++|.++.+.. ..   . .-....+.|+.|++++|.++.++ .+..+++|+.|+|++|.+....+
T Consensus       188 s~N~L~~lp~-~~---~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          188 STNLLESLPA-VP---V-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             cCCCCCchhh-HH---H-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            9888885543 11   0 00011122399999999888876 47789999999999999877655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.37  E-value=4.7e-13  Score=107.32  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             ccccEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCch
Q 037371           14 VSLHHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAE   91 (330)
Q Consensus        14 ~~L~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   91 (330)
                      ++|++|++++|.+.  .+|..+..+++|++|++++|.+. .+ .. +..+++|++|++++|.+               ..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~Ls~N~l---------------~~   85 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SN-LPKLPKLKKLELSENRI---------------FG   85 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SS-CCCCSSCCEEEEESCCC---------------CS
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hh-hccCCCCCEEECcCCcC---------------ch
Confidence            56777777777776  67766677777777777777653 33 22 67777777777777766               22


Q ss_pred             hhHHHhccCcCcceeeEEEec
Q 037371           92 PLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        92 ~~~~~l~~l~~L~~L~l~~~~  112 (330)
                      ..+..+..+++|+.|++++|.
T Consensus        86 ~~~~~~~~l~~L~~L~Ls~N~  106 (168)
T 2ell_A           86 GLDMLAEKLPNLTHLNLSGNK  106 (168)
T ss_dssp             CCCHHHHHCTTCCEEECBSSS
T ss_pred             HHHHHHhhCCCCCEEeccCCc
Confidence            234444445555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=106.95  Aligned_cols=127  Identities=15%  Similarity=0.230  Sum_probs=90.4

Q ss_pred             cEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHH
Q 037371           17 HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKE   96 (330)
Q Consensus        17 ~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (330)
                      +++++++++++.+|..+.  ++|++|++++|.+ ..+|.. +.++++|++|++++|.+               ....+..
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~-~~~l~~L~~L~Ls~N~i---------------~~i~~~~   73 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKE-LSNYKHLTLIDLSNNRI---------------STLSNQS   73 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGG-GGGCTTCCEEECCSSCC---------------CCCCTTT
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHH-hhcccCCCEEECCCCcC---------------CEeCHhH
Confidence            678888888888877543  5788888888866 567754 78888888888888877               3334455


Q ss_pred             hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccccc
Q 037371           97 LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEV  176 (330)
Q Consensus        97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  176 (330)
                      +..+++|+.|++++|.+.                            ......+..+++|+.|+++.|.++.+....+   
T Consensus        74 f~~l~~L~~L~Ls~N~l~----------------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~---  122 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNRLR----------------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAF---  122 (193)
T ss_dssp             TTTCTTCCEEECCSSCCC----------------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTT---
T ss_pred             ccCCCCCCEEECCCCccC----------------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhh---
Confidence            777888888887766522                            2222356778888888888888876644332   


Q ss_pred             CccCCCCCCCccEEEEeccccc
Q 037371          177 KKLFRNGFRSLNTVVLRSCRGK  198 (330)
Q Consensus       177 ~~~~~~~~~~L~~L~L~~~~~~  198 (330)
                           ..+++|+.|++++|.+.
T Consensus       123 -----~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          123 -----NDLSALSHLAIGANPLY  139 (193)
T ss_dssp             -----TTCTTCCEEECCSSCEE
T ss_pred             -----hcCccccEEEeCCCCee
Confidence                 56788899999888543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.35  E-value=5.5e-14  Score=135.03  Aligned_cols=232  Identities=13%  Similarity=0.072  Sum_probs=149.4

Q ss_pred             hhccccccEeecCCC-CCcccChhhhcCcccceeccCCCCC------------------------------CCCCchhhh
Q 037371           10 ISNLVSLHHLDLSRT-NITGLPQELKALEKLRYLNLDHTRF------------------------------LSIIPPQLI   58 (330)
Q Consensus        10 l~~l~~L~~L~L~~~-~~~~lp~~l~~l~~L~~L~l~~~~~------------------------------~~~~p~~~~   58 (330)
                      +.++++|++|++++| .+..+|..+..+++|++|++..+..                              ...++. ++
T Consensus       207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~  285 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VY  285 (594)
T ss_dssp             HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GH
T ss_pred             HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HH
Confidence            355689999999988 4446777777788888887654411                              012232 13


Q ss_pred             CCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeC
Q 037371           59 SGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECG  137 (330)
Q Consensus        59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~  137 (330)
                      ..+++|++|++++|.+ +             .......+.++++|++|++.++ .. ...+......+.+|++|++ +|.
T Consensus       286 ~~~~~L~~L~L~~~~l-~-------------~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~  349 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATV-Q-------------SYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSE  349 (594)
T ss_dssp             HHHTTCCEEECTTCCC-C-------------HHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSC
T ss_pred             HhhCCCCEEEccCCCC-C-------------HHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCc
Confidence            4678999999999887 2             2234455778999999999987 22 1222222234677999999 532


Q ss_pred             ------CCCCCCccccccc-cccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe-----cc-cccccC---
Q 037371          138 ------TYTRPPFNVLHLA-YMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR-----SC-RGKDLT---  201 (330)
Q Consensus       138 ------~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~-----~~-~~~~l~---  201 (330)
                            ...........+. .+++|+.|.++|+.++.......       ...+++|++|++.     +| .++..+   
T Consensus       350 ~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~  422 (594)
T 2p1m_B          350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI-------ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI  422 (594)
T ss_dssp             TTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-------HHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred             ccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-------HhhCCCcceeEeecccCCCcccccCCchhh
Confidence                  1112222233333 58999999888888775432221       1247899999999     44 555322   


Q ss_pred             ----cccccCCccEEEEecccccccccccccccccccccCccc-cCcccceeecccccccccccCC--CCCCCCccEEEE
Q 037371          202 ----WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN-IFARLEYLTMWRGTNVKSVYPN--PLPFPKLKKIQV  274 (330)
Q Consensus       202 ----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~i  274 (330)
                          .+..+++|+.|+|++ .+.+....            .+. .+++|+.|++++|. +.+....  ...+++|++|++
T Consensus       423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~------------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L  488 (594)
T 2p1m_B          423 GFGAIVEHCKDLRRLSLSG-LLTDKVFE------------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEI  488 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCS-SCCHHHHH------------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHhhCCCccEEeecC-cccHHHHH------------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEEC
Confidence                256789999999977 44443221            233 38899999999984 4332211  134899999999


Q ss_pred             ccCCC
Q 037371          275 FHCRQ  279 (330)
Q Consensus       275 ~~c~~  279 (330)
                      ++|+.
T Consensus       489 ~~n~~  493 (594)
T 2p1m_B          489 RDCPF  493 (594)
T ss_dssp             ESCSC
T ss_pred             cCCCC
Confidence            99975

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=1.5e-12  Score=106.84  Aligned_cols=131  Identities=15%  Similarity=0.120  Sum_probs=100.3

Q ss_pred             ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      -+++++++++++.+|..+..  +|++|++++|.+.+..+..+++.+++|++|++++|.+               ....+.
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l---------------~~~~~~   72 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL---------------TGIEPN   72 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC---------------CCBCTT
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC---------------CCcCHh
Confidence            37899999999989886644  8999999999774443333578899999999999888               435567


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      .+..+++|+.|++++|.+.                            ......+..+++|++|++++|.++.+.+..+  
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--  122 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIK----------------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSF--  122 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCC----------------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSS--
T ss_pred             HcCCcccCCEEECCCCcCC----------------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--
Confidence            7888999999998877532                            1222346788999999999888887754443  


Q ss_pred             cCccCCCCCCCccEEEEecccccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKD  199 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~  199 (330)
                            ..+++|++|++++|.+..
T Consensus       123 ------~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          123 ------EHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ------TTCTTCCEEECTTCCBCC
T ss_pred             ------hcCCCCCEEEeCCCCccC
Confidence                  678899999999996553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=2.1e-12  Score=105.95  Aligned_cols=70  Identities=21%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChh--hhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      +++++|..+..  +|++|++++|.+..++..  +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus        19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKI   90 (192)
T ss_dssp             CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCC
T ss_pred             CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCcC
Confidence            34445544432  555555555555544432  455555555555555443333332 55555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.30  E-value=1.5e-12  Score=102.20  Aligned_cols=84  Identities=19%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             ccccccEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           12 NLVSLHHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        12 ~l~~L~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      ..++|++|++++|.+.  .+|..+..+++|++|++++|.+.. + . .++.+++|++|++++|.+               
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~-~~~~l~~L~~L~Ls~n~i---------------   76 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-A-NLPKLNKLKKLELSDNRV---------------   76 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-T-TCCCCTTCCEEECCSSCC---------------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-h-hhhcCCCCCEEECCCCcc---------------
Confidence            3478999999999988  788888889999999999997744 4 3 388899999999999888               


Q ss_pred             chhhHHHhccCcCcceeeEEEech
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                      ....+..+..+++|++|++++|.+
T Consensus        77 ~~~~~~~~~~l~~L~~L~ls~N~i  100 (149)
T 2je0_A           77 SGGLEVLAEKCPNLTHLNLSGNKI  100 (149)
T ss_dssp             CSCTHHHHHHCTTCCEEECTTSCC
T ss_pred             cchHHHHhhhCCCCCEEECCCCcC
Confidence            334566666677777777776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=4.7e-12  Score=112.79  Aligned_cols=60  Identities=20%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             cccccEeecCCCCCc--------------------ccCh-hhhc--------CcccceeccCCCCCCCCCchhhhCCCCC
Q 037371           13 LVSLHHLDLSRTNIT--------------------GLPQ-ELKA--------LEKLRYLNLDHTRFLSIIPPQLISGFSK   63 (330)
Q Consensus        13 l~~L~~L~L~~~~~~--------------------~lp~-~l~~--------l~~L~~L~l~~~~~~~~~p~~~~~~l~~   63 (330)
                      +++|++|+|++|.+.                    .+|. .|..        +.+|+.+++.. .+ ..++..+|.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i-~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KI-KNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TC-CEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cc-cchhHHHhhcCcc
Confidence            677999999998877                    3443 3456        78888888877 34 5666666888888


Q ss_pred             CcEEEeccCCC
Q 037371           64 LEVLRLLSRGR   74 (330)
Q Consensus        64 L~~L~l~~~~~   74 (330)
                      |+.|++.++.+
T Consensus       126 L~~l~l~~n~i  136 (329)
T 3sb4_A          126 LKICQIRKKTA  136 (329)
T ss_dssp             CCEEEBCCSSC
T ss_pred             cceEEcCCCCc
Confidence            88888887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.26  E-value=2.9e-12  Score=102.59  Aligned_cols=98  Identities=19%  Similarity=0.193  Sum_probs=81.7

Q ss_pred             CCCc--cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLS--KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~--~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+ +. 
T Consensus        34 n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~-  109 (168)
T 2ell_A           34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHLNLSGNKL-KD-  109 (168)
T ss_dssp             CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEEECBSSSC-CS-
T ss_pred             CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEEeccCCcc-Cc-
Confidence            4566  8898899999999999999999988 77899999999999999886656764 77899999999999988 21 


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                                  ...+..+..+++|+.|++++|.+.
T Consensus       110 ------------~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          110 ------------ISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             ------------SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             ------------chhHHHHhcCCCCCEEEeeCCcCc
Confidence                        123367888999999999888654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.26  E-value=1e-11  Score=101.92  Aligned_cols=94  Identities=27%  Similarity=0.314  Sum_probs=61.2

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |++.++|..+.  ++|++|++++|.+..+|..+..+++|++|++++|.+. .++..++.++++|++|++++|.+      
T Consensus        20 ~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l------   90 (193)
T 2wfh_A           20 KGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL------   90 (193)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC------
T ss_pred             CCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCcc------
Confidence            35666776554  4677777777777777777777777777777777663 34433477777777777777766      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                               ....+..+..+++|+.|++++|.
T Consensus        91 ---------~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           91 ---------RCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             ---------CBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------CEeCHHHhCCCCCCCEEECCCCC
Confidence                     22334456666777777766554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=1.3e-11  Score=99.72  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCc-ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALE-KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      .+.++.+|++|++++|.+..+|. +..+. +|++|++++|.+. .++ . ++.+++|++|++++|.+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~~-~-l~~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR-KLD-G-FPLLRRLKTLLVNNNRI   76 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC-EEC-C-CCCCSSCCEEECCSSCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC-ccc-c-cccCCCCCEEECCCCcc
Confidence            35556677777777777776654 33333 7777777777653 332 2 66777777777777666

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=3.7e-11  Score=96.99  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=93.0

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      ..+.++++++++..+|..+  .++|++|++++|.+ ..+|..+++.+++|++|++++|.+               .....
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l---------------~~~~~   69 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQI---------------QSLPD   69 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC---------------CCCCT
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcc---------------eEeCh
Confidence            4578888888888888654  36889999998877 455555578889999999998887               22333


Q ss_pred             HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371           95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE  174 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  174 (330)
                      ..+..+++|+.|++++|.+.                            ......+..+++|+.|+++.|.++.+....  
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~----------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--  119 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQ----------------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGI--  119 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTT--
T ss_pred             hHccCCCccCEEECCCCCcc----------------------------ccCHHHhhCCcccCEEECcCCcceEeCHHH--
Confidence            44677888888888766422                            222234677888899999888887554332  


Q ss_pred             ccCccCCCCCCCccEEEEeccccc
Q 037371          175 EVKKLFRNGFRSLNTVVLRSCRGK  198 (330)
Q Consensus       175 ~~~~~~~~~~~~L~~L~L~~~~~~  198 (330)
                            ...+++|++|++++|.+.
T Consensus       120 ------~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          120 ------FDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             ------TTTCTTCCEEECCSSCBC
T ss_pred             ------hcCCcccCEEEecCCCee
Confidence                  256788999999988554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=5.9e-12  Score=98.71  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=83.3

Q ss_pred             CCCc--cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLS--KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~--~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.+.  .+|..++.+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+    
T Consensus        27 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~ls~N~i----  100 (149)
T 2je0_A           27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNLSGNKI----  100 (149)
T ss_dssp             CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEEECTTSCC----
T ss_pred             CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEEECCCCcC----
Confidence            3455  7898899999999999999999988 77899999999999999886657764 77899999999999998    


Q ss_pred             ccccCccccCCch-hhHHHhccCcCcceeeEEEechhh
Q 037371           79 EEEEGSVLCDDAE-PLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        79 ~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                                 .. ..+..+..+++|++|++++|.+..
T Consensus       101 -----------~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A          101 -----------KDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             -----------CSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             -----------CChHHHHHHhhCCCCCEEeCcCCcccc
Confidence                       32 244778999999999999887554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=5.1e-11  Score=96.19  Aligned_cols=69  Identities=26%  Similarity=0.490  Sum_probs=32.2

Q ss_pred             CccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      +.++|..+.  ++|++|++++|++..+|. .+..+++|++|++++|.+ ..+|..++..+++|++|++++|.+
T Consensus        19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCCc
Confidence            444443332  345555555555554443 234455555555555544 233333344555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=1.9e-11  Score=116.64  Aligned_cols=69  Identities=26%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      .++.+|. |+.+++|++|+|++|.++.+|..++.+++|++|++++|.+. .+| . ++++++|++|++++|.+
T Consensus       452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-VANLPRLQELLLCNNRL  520 (567)
T ss_dssp             CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCSSCC
T ss_pred             CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-cCCCCCCcEEECCCCCC
Confidence            3444443 45555555555555554455544555555555555554442 244 2 44555555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=1.5e-11  Score=120.78  Aligned_cols=92  Identities=22%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             ccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371            4 SKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG   83 (330)
Q Consensus         4 ~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   83 (330)
                      ...|..+..+..|++|+|++|.+..+|..+..+++|++|+|++|.+. .+|.. ++++++|++|++++|.+         
T Consensus       214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l---------  282 (727)
T 4b8c_D          214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRL---------  282 (727)
T ss_dssp             --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCC---------
T ss_pred             ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcC---------
Confidence            33456688889999999999998889888889999999999999774 78876 88899999999999888         


Q ss_pred             ccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                            . .++..+..+++|+.|++++|.+
T Consensus       283 ------~-~lp~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          283 ------T-SLPAELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             ------S-SCCSSGGGGTTCSEEECCSSCC
T ss_pred             ------C-ccChhhcCCCCCCEEECCCCCC
Confidence                  3 4466678888888888887754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=3.7e-11  Score=96.85  Aligned_cols=96  Identities=22%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |.+.++|..+.  ++|++|+|++|.+..+ |..+..+++|++|++++|.+ ..+|..++.++++|++|++++|.+     
T Consensus        22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~l-----   93 (174)
T 2r9u_A           22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHL-----   93 (174)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCCcc-----
Confidence            46788898775  7899999999999977 55788999999999999977 566766578999999999999888     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                                .......+..+++|+.|++++|.+.
T Consensus        94 ----------~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           94 ----------KSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ----------CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ----------ceeCHHHhccccCCCEEEeCCCCcc
Confidence                      3223344788999999999988653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=4e-11  Score=96.28  Aligned_cols=95  Identities=24%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |.+.++|..+.  ++|++|+|++|.++.+ |..+..+++|++|++++|.+ ..+|..++.++++|++|++++|.+     
T Consensus        19 n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~l-----   90 (170)
T 3g39_A           19 KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQL-----   90 (170)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCcc-----
Confidence            56788898774  7899999999999977 55688999999999999977 566666578999999999999888     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                                .......+..+++|+.|++++|..
T Consensus        91 ----------~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           91 ----------KSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             ----------CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ----------CEeCHHHhcCCCCCCEEEeCCCCC
Confidence                      323344578889999999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=7.8e-13  Score=109.06  Aligned_cols=156  Identities=14%  Similarity=0.158  Sum_probs=91.6

Q ss_pred             hhccccccEeecCCCCCc-------ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371           10 ISNLVSLHHLDLSRTNIT-------GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~-------~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      +.....+..++++.+.+.       .+|..+..+++|++|++++|.+ ..+| . +.++++|++|++++|.+        
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~-~~~l~~L~~L~l~~n~l--------   82 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-S-LSGMENLRILSLGRNLI--------   82 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-C-HHHHTTCCEEEEEEEEE--------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-c-cccCCCCCEEECCCCCc--------
Confidence            444455555555554433       3334777777888888877766 3466 3 77777788888877766        


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc-cccccccccCccEEEE
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF-NVLHLAYMENLQELEL  160 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~l~~l~~L~~L~l  160 (330)
                             . .++..+..+++|+.|++++|.+..++.+.    .+.+|+.|++ +..-   ... ....+..+++|++|++
T Consensus        83 -------~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~----~l~~L~~L~l~~N~i---~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           83 -------K-KIENLDAVADTLEELWISYNQIASLSGIE----KLVNLRVLYMSNNKI---TNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             -------C-SCSSHHHHHHHCSEEEEEEEECCCHHHHH----HHHHSSEEEESEEEC---CCHHHHHHHTTTTTCSEEEE
T ss_pred             -------c-cccchhhcCCcCCEEECcCCcCCcCCccc----cCCCCCEEECCCCcC---CchhHHHHHhcCCCCCEEEe
Confidence                   2 23334555677777888777766554332    2455777777 4332   221 1245778889999999


Q ss_pred             EccCcceeeeCcc--cccCccCCCCCCCccEEE
Q 037371          161 GSSKLEEMKIDST--EEVKKLFRNGFRSLNTVV  191 (330)
Q Consensus       161 ~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~  191 (330)
                      ++|.++...+...  ..........+++|+.|+
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            8777754432210  000000124578888886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.11  E-value=2.1e-12  Score=106.48  Aligned_cols=160  Identities=15%  Similarity=0.175  Sum_probs=101.2

Q ss_pred             hhhcCcccceeccCCCCCCCCCch------hhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcce
Q 037371           32 ELKALEKLRYLNLDHTRFLSIIPP------QLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNV  105 (330)
Q Consensus        32 ~l~~l~~L~~L~l~~~~~~~~~p~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  105 (330)
                      .+.....++.++++.+.+.+.+|.      . ++.+++|++|++++|.+               .. ++ .+.++++|+.
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l---------------~~-l~-~~~~l~~L~~   74 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNI---------------EK-IS-SLSGMENLRI   74 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEE---------------SC-CC-CHHHHTTCCE
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCC---------------cc-cc-ccccCCCCCE
Confidence            355667777778877766655554      5 88999999999999888               22 33 7788899999


Q ss_pred             eeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCC
Q 037371          106 LSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFR  185 (330)
Q Consensus       106 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  185 (330)
                      |++++|.+..++                             ..+..+++|+.|++++|.++.+.  .        ...++
T Consensus        75 L~l~~n~l~~l~-----------------------------~~~~~~~~L~~L~L~~N~l~~l~--~--------~~~l~  115 (198)
T 1ds9_A           75 LSLGRNLIKKIE-----------------------------NLDAVADTLEELWISYNQIASLS--G--------IEKLV  115 (198)
T ss_dssp             EEEEEEEECSCS-----------------------------SHHHHHHHCSEEEEEEEECCCHH--H--------HHHHH
T ss_pred             EECCCCCccccc-----------------------------chhhcCCcCCEEECcCCcCCcCC--c--------cccCC
Confidence            999988643211                             12344567777777766665432  1        23456


Q ss_pred             CccEEEEecccccccC---cccccCCccEEEEecccccccccccccccccccccCccccCcccceeec
Q 037371          186 SLNTVVLRSCRGKDLT---WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTM  250 (330)
Q Consensus       186 ~L~~L~L~~~~~~~l~---~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  250 (330)
                      +|++|++++|.+..++   .+..+++|++|++++|.+....+....  ........+..+++|+.|+-
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA--TSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT--HHHHHHHHHHHCSSCSEECC
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc--hHHHHHHHHHhCCCcEEECC
Confidence            7777777777655533   466777788888877776555331000  00000012556777777763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=7.1e-10  Score=98.60  Aligned_cols=227  Identities=13%  Similarity=0.081  Sum_probs=135.2

Q ss_pred             cCChh-hhc--------cccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371            5 KLPSG-ISN--------LVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus         5 ~lp~~-l~~--------l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      ++|.. |.+        |.+|+.+++.. +++.++. .|..|++|+.+++..|.+ ..++..+|.++.++..+.......
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i-~~i~~~aF~~~~~l~~l~~~~~~~  160 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA-PNLLPEALADSVTAIFIPLGSSDA  160 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC-CEECTTSSCTTTCEEEECTTCTHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc-cccchhhhcCCCceEEecCcchhh
Confidence            45653 777        99999999999 8888876 678999999999999866 466766788888888777655211


Q ss_pred             CCccccccCccccCCchhhHHHhccCcCcc-eeeEEEechhhHHH-hhccccccCceEEEEE-EeCCCCCCCcccccc-c
Q 037371           75 WSVLEEEEGSVLCDDAEPLMKELLGLKHLN-VLSWSFRSSLAVQK-FLKYPKLVSITQSVWV-ECGTYTRPPFNVLHL-A  150 (330)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l-~  150 (330)
                      ...   .        .......+..+..|+ .+.+....  .+.. +.........+..+.+ +.    ........+ .
T Consensus       161 ~~~---~--------~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~----l~~~~~~~l~~  223 (329)
T 3sb4_A          161 YRF---K--------NRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK----LDNADFKLIRD  223 (329)
T ss_dssp             HHT---S--------TTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC----CCHHHHHHHHH
T ss_pred             hhc---c--------ccccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeee----ecHHHHHHHHH
Confidence            000   0        000111233444444 33332111  1111 1111112233444554 21    111111222 2


Q ss_pred             cccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCcc-EEEEecccccccccccc
Q 037371          151 YMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLK-QLNMQGFTMEEIISVDK  227 (330)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~-~L~L~~~~l~~~~~~~~  227 (330)
                      .+++|+.+++..+.++.+....+        ..+.+|++|.+.++ +..+  .++.++++|+ .+.+.+ .++.+..   
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF--------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~---  290 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTF--------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF---  290 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTT--------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT---
T ss_pred             hcCCCeEEECCCCCcceecHhhh--------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch---
Confidence            36788888888767776654443        66778888888776 3333  3577788888 888877 6666654   


Q ss_pred             cccccccccCccccCcccceeecccccccccccCCCCC-CCCccEEE
Q 037371          228 LSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQ  273 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~  273 (330)
                               ..+..+++|+.|++... .++.+....+. +++|+.++
T Consensus       291 ---------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          291 ---------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ---------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             ---------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence                     26777788888887654 56666655433 66777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.02  E-value=6.3e-09  Score=94.96  Aligned_cols=251  Identities=9%  Similarity=0.010  Sum_probs=159.7

Q ss_pred             CCCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      +++++++.. |.++ +|+.+.+..+ +..++. .|.+ .+|+.+.+..+ + ..++..+|.++++|+.+++.++.+ +. 
T Consensus       122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~l~l~~n~l-~~-  194 (401)
T 4fdw_A          122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-L-EQLKEDIFYYCYNLKKADLSKTKI-TK-  194 (401)
T ss_dssp             TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-C-CEECSSTTTTCTTCCEEECTTSCC-SE-
T ss_pred             CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-c-cEehHHHhhCcccCCeeecCCCcc-eE-
Confidence            356667654 7775 7999998775 666766 4444 57999998763 3 566666689999999999988776 22 


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                   .....+. ..+|+.+.+..+ +..+.  ...+..+.+|+.+.+.- +  ........|.+ .+|+.+
T Consensus       195 -------------I~~~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~-~--l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          195 -------------LPASTFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPE-N--VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             -------------ECTTTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCT-T--CCEECTTTTTT-CCCSEE
T ss_pred             -------------echhhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCC-C--ccCcccccccc-CCccEE
Confidence                         1122233 467887777532 21111  12234455677777711 1  12223344555 678888


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccc-------ccCcccccCCccEEEEecccccccccccccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK-------DLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDI  231 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-------~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  231 (330)
                      .+. +.++.+....        ...+++|+.+.+.++...       .-.++.++++|+.+.|.+ .++.++.       
T Consensus       254 ~lp-~~i~~I~~~a--------F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-------  316 (401)
T 4fdw_A          254 KLP-NGVTNIASRA--------FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-------  316 (401)
T ss_dssp             EEE-TTCCEECTTT--------TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-------
T ss_pred             EeC-CCccEEChhH--------hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-------
Confidence            885 4455554433        477899999999887332       233688899999999984 5777755       


Q ss_pred             cccccCccccCcccceeecccccccccccCCCCC-CCCccEEEEccCCCCCCCCCCCcC-CCCCceEEeccHHHHh
Q 037371          232 SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQVFHCRQLKKLPLNSSS-AKGRRVVIEGTKKWWE  305 (330)
Q Consensus       232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~~-~~~~~~~i~~~~~~~~  305 (330)
                           ..+..+++|+.+.+..  .++.+...... + +|+.+.+.+. .+..++..... ....+..+..+....+
T Consensus       317 -----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          317 -----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             -----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             -----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence                 3777889999999964  36666655444 5 9999999984 66666655444 2223444554443333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.00  E-value=6.8e-09  Score=94.77  Aligned_cols=207  Identities=13%  Similarity=0.085  Sum_probs=136.1

Q ss_pred             CCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      ++.+++.. |.++ +|+.+.+.. ++..++. .|..|.+|+.+++..|.+ ..++..++. ..+|+.+.+..+ +     
T Consensus       145 ~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l-~~I~~~aF~-~~~L~~l~lp~~-l-----  214 (401)
T 4fdw_A          145 GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI-TKLPASTFV-YAGIEEVLLPVT-L-----  214 (401)
T ss_dssp             TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC-SEECTTTTT-TCCCSEEECCTT-C-----
T ss_pred             CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc-eEechhhEe-ecccCEEEeCCc-h-----
Confidence            35566654 6664 688888886 5666654 677888899999988755 667766565 588888888753 3     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE  159 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~  159 (330)
                                .......+..+++|+.+.+..+ +..+..  ..+.. ..|+.+.+. ..  ........|.++++|+.++
T Consensus       215 ----------~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--~aF~~-~~L~~i~lp-~~--i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          215 ----------KEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--EAFRE-SGITTVKLP-NG--VTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             ----------CEECTTTTTTCTTCCCEECCTT-CCEECT--TTTTT-CCCSEEEEE-TT--CCEECTTTTTTCTTCCEEE
T ss_pred             ----------heehhhHhhCCCCCCEEecCCC-ccCccc--ccccc-CCccEEEeC-CC--ccEEChhHhhCCCCCCEEE
Confidence                      2233456778888888887643 111111  11111 457777771 11  2334456788999999999


Q ss_pred             EEccCcc-----eeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEeccccccccccccccccc
Q 037371          160 LGSSKLE-----EMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDIS  232 (330)
Q Consensus       160 l~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  232 (330)
                      +..+...     .+...        ....+++|+.+.|.+. +..  -.++.++++|+.+.|..+ +..+..        
T Consensus       278 l~~~~~~~~~~~~I~~~--------aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~--------  339 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPY--------CLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINF--------  339 (401)
T ss_dssp             EESSCCCCCTTCEECTT--------TTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECT--------
T ss_pred             eCCccccCCcccEECHH--------HhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcH--------
Confidence            9865543     23222        3467889999999854 333  346888999999999653 666654        


Q ss_pred             ccccCccccCcccceeecccccccccc
Q 037371          233 EIIGSEHNIFARLEYLTMWRGTNVKSV  259 (330)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~l  259 (330)
                          ..+..+ +|+.+.+.+. .+..+
T Consensus       340 ----~aF~~~-~L~~l~l~~n-~~~~l  360 (401)
T 4fdw_A          340 ----SAFNNT-GIKEVKVEGT-TPPQV  360 (401)
T ss_dssp             ----TSSSSS-CCCEEEECCS-SCCBC
T ss_pred             ----HhCCCC-CCCEEEEcCC-CCccc
Confidence                267777 8999999887 44443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.96  E-value=2.8e-10  Score=111.80  Aligned_cols=97  Identities=25%  Similarity=0.320  Sum_probs=86.8

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.+..+|..+.++++|++|+|++|.++.+|..++.+++|++|+|++|.+. .+|.. ++++++|++|++++|.+      
T Consensus       234 n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l------  305 (727)
T 4b8c_D          234 LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFYFFDNMV------  305 (727)
T ss_dssp             SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEECCSSCC------
T ss_pred             CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEECCCCCC------
Confidence            56788999999999999999999999999999999999999999999885 88887 89999999999999988      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                               . .++..+.++++|+.|++++|.+..
T Consensus       306 ---------~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          306 ---------T-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             ---------C-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             ---------C-ccChhhhcCCCccEEeCCCCccCC
Confidence                     2 455668999999999999987653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.96  E-value=9.8e-10  Score=88.09  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      ..+++++++++++.+|..+.  ++|++|++++|.+.+..|. .+.++++|++|++++|.+               ....+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l---------------~~l~~   71 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQL---------------TVLPA   71 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCC---------------CCCCT
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCc---------------CccCh
Confidence            46889999999999998663  8899999999988544454 488999999999999888               22222


Q ss_pred             HHhccCcCcceeeEEEec
Q 037371           95 KELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~  112 (330)
                      ..+..+++|++|++++|.
T Consensus        72 ~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           72 GVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             hhccCCCCCCEEECCCCc
Confidence            334556666666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.92  E-value=3.8e-11  Score=108.65  Aligned_cols=72  Identities=14%  Similarity=-0.006  Sum_probs=40.4

Q ss_pred             cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC------cccccCCccEEEEeccccccc
Q 037371          149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT------WLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~------~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +...++|++|++++|.+++......    .......++|++|+|++|.+++..      .+...++|++|+|++|.+.+.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L----~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELL----AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHH----HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHH----HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            3456667777777666654321111    001123456777777777555421      234567777777777776655


Q ss_pred             cc
Q 037371          223 IS  224 (330)
Q Consensus       223 ~~  224 (330)
                      +.
T Consensus       255 g~  256 (372)
T 3un9_A          255 GR  256 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.92  E-value=1.7e-09  Score=87.07  Aligned_cols=56  Identities=13%  Similarity=0.212  Sum_probs=46.6

Q ss_pred             ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371           16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      -++++++++++..+|..+.  ++|++|++++|.+.+..|. .+.++++|++|++++|.+
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l   69 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKL   69 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCC
Confidence            4789999999999998664  8899999999987544454 488999999999999887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.91  E-value=1.5e-09  Score=87.48  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             CCCccCChhhhccc-cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            1 LSLSKLPSGISNLV-SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         1 ~~l~~lp~~l~~l~-~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      |.+..+|. +..+. +|++|++++|.+..+ ..+..+++|++|++++|.+ ..+|+.+++.+++|++|++++|.+ ..  
T Consensus        29 n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i-~~--  102 (176)
T 1a9n_A           29 YKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSL-VE--  102 (176)
T ss_dssp             SCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CC--
T ss_pred             CCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCcC-Cc--
Confidence            45677764 55555 999999999999887 5788999999999999977 566765468899999999999888 21  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHh-hccccccCceEEEEE
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF-LKYPKLVSITQSVWV  134 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l  134 (330)
                                . .....+..+++|+.|++++|.+...... ......++.|+.|++
T Consensus       103 ----------~-~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A          103 ----------L-GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             ----------G-GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ----------c-hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence                      0 1123678899999999999887654331 011234566888877

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.91  E-value=8.1e-10  Score=98.86  Aligned_cols=95  Identities=21%  Similarity=0.221  Sum_probs=76.9

Q ss_pred             CCCccCChhhhccccccEeecCC-CCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSR-TNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~-~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |+|.++|. |..+.+|++|+|++ |.+..+|. .+..+++|++|+|++|.+.+ +++.+|.++++|++|++++|.+ +. 
T Consensus        19 n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~-   94 (347)
T 2ifg_A           19 GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ES-   94 (347)
T ss_dssp             CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SC-
T ss_pred             CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ce-
Confidence            47899999 99999999999996 99998874 68999999999999998744 5544589999999999999988 22 


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                                   ..+..+..++ |+.|++.+|.+
T Consensus        95 -------------~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           95 -------------LSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             -------------CCSTTTCSCC-CCEEECCSSCC
T ss_pred             -------------eCHHHcccCC-ceEEEeeCCCc
Confidence                         2223344444 99999998865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.64  E-value=3.4e-08  Score=88.23  Aligned_cols=82  Identities=18%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             cEeecCCC-CCcccChhhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           17 HHLDLSRT-NITGLPQELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        17 ~~L~L~~~-~~~~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      ..++.+++ ++..+|. +..+.+|+.|+|++ |.+ ..+|...++++++|++|++++|.+               ....+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l---------------~~~~~   73 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHL-QHLELRDLRGLGELRNLTIVKSGL---------------RFVAP   73 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-CEECGGGSCSCCCCSEEECCSSCC---------------CEECT
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-CCcChhHhccccCCCEEECCCCcc---------------ceeCH
Confidence            45788888 8999999 99999999999996 866 666655599999999999999998               44556


Q ss_pred             HHhccCcCcceeeEEEechhh
Q 037371           95 KELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~  115 (330)
                      ..+.++++|+.|++++|.+..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~   94 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALES   94 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSC
T ss_pred             HHhcCCcCCCEEeCCCCccce
Confidence            678999999999999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.60  E-value=8e-09  Score=92.83  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=44.1

Q ss_pred             ccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------CcccccCCccEEEEeccccccc
Q 037371          150 AYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      ..+|+|+.|++..+.+.+......     ...+.+++|++|+|+.|.+.+.      ..+..+++|+.|+|++|.+.+.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~l-----a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMF-----LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHH-----HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHH-----HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            357889999998555543211111     0113468899999988866552      2345688999999988776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=1.4e-07  Score=84.70  Aligned_cols=144  Identities=15%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             hHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccc--cccCccEEEEE-c-cCc-ce
Q 037371           93 LMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA--YMENLQELELG-S-SKL-EE  167 (330)
Q Consensus        93 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~--~l~~L~~L~l~-~-~~~-~~  167 (330)
                      +...+..+++|+.|.+.++....+.   . . ...+|++|++.+..  ........+.  .+|+|++|+++ + +.. .+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~---~-~-~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIG---K-K-PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCC---S-C-BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceec---c-c-cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence            4455667777787777765311111   1 1 14557777773222  1222223333  67888888886 2 111 11


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecccccc--cCcc---cccCCccEEEEecccccccccccccccccccccCccccC
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWL---VFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIF  242 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l---~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      ......  ........+++|++|.+.+|.+.+  ...+   ..+++|++|+|+.|.+.+.+.....        ..+..+
T Consensus       237 ~~~~~l--~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~--------~~L~~l  306 (362)
T 2ra8_A          237 GDMNVF--RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL--------DHVDKI  306 (362)
T ss_dssp             SCGGGT--GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH--------TTHHHH
T ss_pred             hhHHHH--HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH--------hhcccC
Confidence            001000  001112357888888888885443  1112   3478888888887777665321000        023457


Q ss_pred             cccceeecccc
Q 037371          243 ARLEYLTMWRG  253 (330)
Q Consensus       243 ~~L~~L~l~~~  253 (330)
                      ++|+.|++++|
T Consensus       307 ~~L~~L~L~~n  317 (362)
T 2ra8_A          307 KHLKFINMKYN  317 (362)
T ss_dssp             TTCSEEECCSB
T ss_pred             CcceEEECCCC
Confidence            78888888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.39  E-value=6e-08  Score=87.61  Aligned_cols=166  Identities=17%  Similarity=0.061  Sum_probs=109.1

Q ss_pred             cccccEeecCCCCCcc-----cChhhh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccc
Q 037371           13 LVSLHHLDLSRTNITG-----LPQELK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVL   86 (330)
Q Consensus        13 l~~L~~L~L~~~~~~~-----lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   86 (330)
                      +++|++|++++|.++.     +...+. ...+|++|++++|.+.......+...+.+|++|++++|.+            
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l------------  138 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL------------  138 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC------------
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC------------
Confidence            4689999999999873     222222 2378999999999774433333344577899999999988            


Q ss_pred             cCCchhhHHH----h-ccCcCcceeeEEEechhh--HHHhhccccccCceEEEEEEeCCCCCCCcc----ccccccccCc
Q 037371           87 CDDAEPLMKE----L-LGLKHLNVLSWSFRSSLA--VQKFLKYPKLVSITQSVWVECGTYTRPPFN----VLHLAYMENL  155 (330)
Q Consensus        87 ~~~~~~~~~~----l-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L  155 (330)
                         .......    + ...++|++|++++|.+..  ...+........+|++|++..+.  .....    ...+...++|
T Consensus       139 ---~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          139 ---GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLELLAAQLDRNRQL  213 (372)
T ss_dssp             ---CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHHHHHHGGGCSCC
T ss_pred             ---CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHHHHHHHhcCCCc
Confidence               3333333    3 357889999999998744  33444444456679999982222  12211    2346677899


Q ss_pred             cEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371          156 QELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD  199 (330)
Q Consensus       156 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  199 (330)
                      +.|++++|.+++......    .......++|++|+|++|.+.+
T Consensus       214 ~~L~Ls~N~i~~~g~~~l----~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          214 QELNVAYNGAGDTAALAL----ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CEEECCSSCCCHHHHHHH----HHHHHHCSSCCEEECTTSSCCH
T ss_pred             CeEECCCCCCCHHHHHHH----HHHHHhCCCCCEEeccCCCCCH
Confidence            999999888775432221    0011245789999999996655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.29  E-value=5.7e-07  Score=71.66  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=15.2

Q ss_pred             ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCC
Q 037371           38 KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRG   73 (330)
Q Consensus        38 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~   73 (330)
                      +|+.||+++|.+...--.. ++++++|++|++++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCC
Confidence            3555555555432211111 4455555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=8.4e-07  Score=70.71  Aligned_cols=37  Identities=8%  Similarity=0.009  Sum_probs=29.8

Q ss_pred             CCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371           61 FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        61 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                      -.+|++||+++|.+               .......+..+++|++|+++++.
T Consensus        60 ~~~L~~LDLs~~~I---------------td~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           60 KYKIQAIDATDSCI---------------MSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCCEEEEEEESCCC---------------CGGGGGGGTTCSCCCEEEEESCT
T ss_pred             CceEeEEeCcCCCc---------------cHHHHHHhcCCCCCCEEEeCCCC
Confidence            35799999999988               44666777889999999988875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.10  E-value=2.6e-05  Score=70.76  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc
Q 037371           32 ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS   71 (330)
Q Consensus        32 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~   71 (330)
                      .+..+.+|+.+.+..+ . ..++..++.++.+|+.+++..
T Consensus       157 aF~~c~~L~~i~l~~~-~-~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-M-ETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCBCCCCT
T ss_pred             hhcccCCCcEEecCCc-c-ceeccccccCCCCceEEEcCC
Confidence            4556666666666543 2 344444566666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=2.7e-06  Score=68.79  Aligned_cols=64  Identities=19%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             hhccccccEeecCCC-CCc-----ccChhhhcCcccceeccCCCCCCCC----CchhhhCCCCCCcEEEeccCCC
Q 037371           10 ISNLVSLHHLDLSRT-NIT-----GLPQELKALEKLRYLNLDHTRFLSI----IPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        10 l~~l~~L~~L~L~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      +...+.|++|+|++| .+.     .+...+...++|++|++++|.+...    +.. ++...++|++|++++|.+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcC
Confidence            344556666666666 554     2333445556666666666654221    111 133445566666666655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.00  E-value=8.4e-05  Score=67.37  Aligned_cols=92  Identities=12%  Similarity=0.165  Sum_probs=52.3

Q ss_pred             CCCCCCccEEEEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371          181 RNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV  259 (330)
Q Consensus       181 ~~~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  259 (330)
                      ...+.+|+.+.+.+. .-..-.++.++++|+.+.+. ..+..++.            ..+..+.+|+.+.+..  .++.+
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~------------~aF~~c~~L~~i~lp~--~v~~I  325 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPE------------SVFAGCISLKSIDIPE--GITQI  325 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECT------------TTTTTCTTCCEEECCT--TCCEE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCC-CcccccCc------------eeecCCCCcCEEEeCC--cccEe
Confidence            345566777776554 11112345667777777775 33444533            2566677777777753  35555


Q ss_pred             cCCCCC-CCCccEEEEccCCCCCCCCCCCcC
Q 037371          260 YPNPLP-FPKLKKIQVFHCRQLKKLPLNSSS  289 (330)
Q Consensus       260 ~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~~  289 (330)
                      ...... +.+|+.+.+-.  +++.+....+.
T Consensus       326 ~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~  354 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIPS--SVTKIPESAFS  354 (394)
T ss_dssp             CTTTTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred             hHhHhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence            444333 67777777743  45555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=1.2e-05  Score=68.74  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=16.8

Q ss_pred             cccccEeecCCCCCcc---cChhhhcCcccceeccCCCCC
Q 037371           13 LVSLHHLDLSRTNITG---LPQELKALEKLRYLNLDHTRF   49 (330)
Q Consensus        13 l~~L~~L~L~~~~~~~---lp~~l~~l~~L~~L~l~~~~~   49 (330)
                      +++|++|+|++|.+..   +|..+..+++|+.|+|++|.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  208 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence            3445555555554442   223334445555555554444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.75  E-value=0.00013  Score=66.20  Aligned_cols=216  Identities=14%  Similarity=0.062  Sum_probs=129.4

Q ss_pred             hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      .|.+|.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ + ..++..++.++..|+.+.+..+..             
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~-~~I~~~~F~~~~~L~~i~~~~~~~-------------  220 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-L-KIIRDYCFAECILLENMEFPNSLY-------------  220 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-C-CEECTTTTTTCTTCCBCCCCTTCC-------------
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-c-eEeCchhhccccccceeecCCCce-------------
Confidence            4889999999999865 445554 5678999999999776 3 566666688999999988876443             


Q ss_pred             CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371           88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEE  167 (330)
Q Consensus        88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (330)
                          ..........+|+.+.+.... ..+.  ......+..++.+.+....   .......+..+..++.+......   
T Consensus       221 ----~i~~~~~~~~~l~~i~ip~~~-~~i~--~~~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~---  287 (394)
T 4fs7_A          221 ----YLGDFALSKTGVKNIIIPDSF-TELG--KSVFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVI---  287 (394)
T ss_dssp             ----EECTTTTTTCCCCEEEECTTC-CEEC--SSTTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSE---
T ss_pred             ----EeehhhcccCCCceEEECCCc-eecc--cccccccccceeEEcCCCc---ceeeccccccccccceeccCcee---
Confidence                111122334567766664321 1000  1122334556666662111   22233456667777766654221   


Q ss_pred             eeeCcccccCccCCCCCCCccEEEEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccc
Q 037371          168 MKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLE  246 (330)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  246 (330)
                      +.        ......+.+|+.+.+.++ ....-.++.++.+|+.+.|.+ .++.++.            ..+..+.+|+
T Consensus       288 i~--------~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~------------~aF~~c~~L~  346 (394)
T 4fs7_A          288 VP--------EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY-LVEEIGK------------RSFRGCTSLS  346 (394)
T ss_dssp             EC--------TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT-TCCEECT------------TTTTTCTTCC
T ss_pred             ec--------cccccccccccccccccccceechhhhcCCCCCCEEEeCC-cccEEhH------------HhccCCCCCC
Confidence            11        112355677888888655 222233577788888888764 3555644            2666777888


Q ss_pred             eeecccccccccccCCCCC-CCCccEEEEcc
Q 037371          247 YLTMWRGTNVKSVYPNPLP-FPKLKKIQVFH  276 (330)
Q Consensus       247 ~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~  276 (330)
                      .+.+...  ++.+...... +++|+.+.+..
T Consensus       347 ~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          347 NINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            8877542  5555544333 67788777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.70  E-value=4e-06  Score=71.67  Aligned_cols=88  Identities=17%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             hccccccE--eecCCCCCcccChh----hhcCcccceeccCCCCCCC--CCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371           11 SNLVSLHH--LDLSRTNITGLPQE----LKALEKLRYLNLDHTRFLS--IIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus        11 ~~l~~L~~--L~L~~~~~~~lp~~----l~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      ...+.|..  ++++.|....++..    ..++++|+.|++++|.+.+  .+|. .++.+++|+.|++++|.+ +.     
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i-~~-----  210 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL-KS-----  210 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCC-CS-----
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCcc-CC-----
Confidence            33344444  55555543333321    2467888888888887744  3333 366788888888888888 22     


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                             . .....+..+ +|++|.+.+|.+.
T Consensus       211 -------~-~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          211 -------E-RELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             -------G-GGGGGGTTS-CCSEEECTTSTTG
T ss_pred             -------c-hhhhhcccC-CcceEEccCCcCc
Confidence                   1 112223333 7888888877754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.63  E-value=2.5e-05  Score=63.02  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=72.9

Q ss_pred             CChhhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCC----CchhhhCCCCCCcEEEe--ccCCC
Q 037371            6 LPSGISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSI----IPPQLISGFSKLEVLRL--LSRGR   74 (330)
Q Consensus         6 lp~~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l--~~~~~   74 (330)
                      +...+...++|++|+|++|.+.     .+...+...+.|++|++++|.+...    +.. ++...++|++|++  ++|.+
T Consensus        57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A           57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH-HHHhCCCceEEEecCCCCCC
Confidence            3445667789999999999987     3555677788999999999977432    233 3778889999999  88888


Q ss_pred             CCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371           75 WSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                       ..    .+      ...+...+...++|++|++++|.+..
T Consensus       136 -~~----~g------~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          136 -GN----NV------EMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             -CH----HH------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             -CH----HH------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             21    01      22355677788999999999987643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.59  E-value=0.00077  Score=60.96  Aligned_cols=226  Identities=9%  Similarity=0.058  Sum_probs=115.2

Q ss_pred             CccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            3 LSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         3 l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      +++++. .|..|..|+.+.+..+ +..++. .+..+.+|+.+.+..+ . ..++..++..+.+|+.+.+..+-.  .   
T Consensus       102 l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~-~~I~~~~F~~c~~L~~i~~~~~~~--~---  173 (394)
T 4gt6_A          102 VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-V-TSVADGMFSYCYSLHTVTLPDSVT--A---  173 (394)
T ss_dssp             CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTTCC--E---
T ss_pred             eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-e-eeecccceecccccccccccceee--E---
Confidence            455554 3777888888777654 455544 5677888888888654 2 455555577888888888765321  0   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE------------------------Ee
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV------------------------EC  136 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l------------------------~~  136 (330)
                      +           ....+. ..+|+.+.+..+...- .  ......+..+.....                        .+
T Consensus       174 I-----------~~~aF~-~~~l~~i~ip~~~~~i-~--~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T 4gt6_A          174 I-----------EERAFT-GTALTQIHIPAKVTRI-G--TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY  238 (394)
T ss_dssp             E-----------CTTTTT-TCCCSEEEECTTCCEE-C--TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred             e-----------cccccc-ccceeEEEECCccccc-c--cchhhhccccceecccccccccccceeeccccccccccccc
Confidence            1           011111 1234444433210000 0  000001111111111                        00


Q ss_pred             CCC----------CCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCccc
Q 037371          137 GTY----------TRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLV  204 (330)
Q Consensus       137 ~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~  204 (330)
                      ...          .........|..+..|+.+.+..+ +..+.        ......+.+|+.+.+... +..  -.++.
T Consensus       239 ~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~--------~~aF~~c~~L~~i~l~~~-i~~I~~~aF~  308 (394)
T 4gt6_A          239 PSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIG--------TGAFMNCPALQDIEFSSR-ITELPESVFA  308 (394)
T ss_dssp             CTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEEC--------TTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             ccccccceEEcCCcceEcccceeeecccccEEecccc-cceec--------CcccccccccccccCCCc-ccccCceeec
Confidence            000          001111234566677777766422 22232        222356677888887544 222  23577


Q ss_pred             ccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCC-CCCCccEEEEcc
Q 037371          205 FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFH  276 (330)
Q Consensus       205 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~  276 (330)
                      ++.+|+.+.|.. .++.++.            ..+..+.+|+.+.+-.  .++.+..... .+.+|+.+.+.+
T Consensus       309 ~c~~L~~i~lp~-~v~~I~~------------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          309 GCISLKSIDIPE-GITQILD------------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             TCTTCCEEECCT-TCCEECT------------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             CCCCcCEEEeCC-cccEehH------------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence            788888888864 3555544            2667777888887753  3444443332 367788777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.39  E-value=0.0014  Score=58.72  Aligned_cols=58  Identities=14%  Similarity=0.079  Sum_probs=33.7

Q ss_pred             CCCCCccEEEEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecc
Q 037371          182 NGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMW  251 (330)
Q Consensus       182 ~~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  251 (330)
                      ..+.+|+.+.+... ....-..+.++.+|+.+.+.++.++.+..            ..+..+.+|+.+.+.
T Consensus       260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~------------~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEP------------RVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECT------------TTTTTCTTCCEEECC
T ss_pred             ceeehhccccccccceeccccccccccccccccccccccceehh------------hhhcCCCCCCEEEcC
Confidence            44556666666444 11112245667777777776666666644            255666677777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.38  E-value=0.015  Score=51.99  Aligned_cols=180  Identities=13%  Similarity=0.096  Sum_probs=90.2

Q ss_pred             CccCCh-hhhccccccEeecCCCCCcc-------------cChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEE
Q 037371            3 LSKLPS-GISNLVSLHHLDLSRTNITG-------------LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLR   68 (330)
Q Consensus         3 l~~lp~-~l~~l~~L~~L~L~~~~~~~-------------lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~   68 (330)
                      +..+.. .+..+..+....+.......             ....+.....+..+.+... . ..+...++....+|+.+.
T Consensus       146 v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~f~~~~~l~~i~  223 (379)
T 4h09_A          146 VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-V-KTVTAYGFSYGKNLKKIT  223 (379)
T ss_dssp             CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-C-CEECTTTTTTCSSCSEEE
T ss_pred             eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc-e-eEEeecccccccccceee
Confidence            444554 37778888888877653221             1112334445555555433 1 223333367788888888


Q ss_pred             eccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccc
Q 037371           69 LLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH  148 (330)
Q Consensus        69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  148 (330)
                      +..+-.                ......+..+..|+.+.+..+ +                            .......
T Consensus       224 ~~~~~~----------------~i~~~~f~~~~~L~~i~lp~~-v----------------------------~~I~~~a  258 (379)
T 4h09_A          224 ITSGVT----------------TLGDGAFYGMKALDEIAIPKN-V----------------------------TSIGSFL  258 (379)
T ss_dssp             CCTTCC----------------EECTTTTTTCSSCCEEEECTT-C----------------------------CEECTTT
T ss_pred             ecccee----------------EEccccccCCccceEEEcCCC-c----------------------------cEeCccc
Confidence            765321                122334556667776665421 0                            1111123


Q ss_pred             cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccccccc
Q 037371          149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVD  226 (330)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~  226 (330)
                      +..+.+|+.+.+.. .++.+....        ...+.+|+.+.+.++.++.+.  ++.++.+|+.+.|.. .++.++.  
T Consensus       259 F~~~~~l~~i~l~~-~i~~i~~~a--------F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~--  326 (379)
T 4h09_A          259 LQNCTALKTLNFYA-KVKTVPYLL--------CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQV--  326 (379)
T ss_dssp             TTTCTTCCEEEECC-CCSEECTTT--------TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECT--
T ss_pred             cceeehhccccccc-cceeccccc--------cccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHH--
Confidence            44555555555531 233232221        245566666666555443332  455666666666653 2444433  


Q ss_pred             ccccccccccCccccCcccceeecc
Q 037371          227 KLSDISEIIGSEHNIFARLEYLTMW  251 (330)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~L~~L~l~  251 (330)
                                ..+..+.+|+.+.+-
T Consensus       327 ----------~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          327 ----------YAFKNCKALSTISYP  341 (379)
T ss_dssp             ----------TTTTTCTTCCCCCCC
T ss_pred             ----------HHhhCCCCCCEEEEC
Confidence                      255556666666664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.29  E-value=0.0042  Score=46.69  Aligned_cols=55  Identities=22%  Similarity=0.350  Sum_probs=45.0

Q ss_pred             cEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371           17 HHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        17 ~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      .+++-++++++  .+|..+.  .+|++|+|++|.+ ..+|..++..+++|+.|++.+|..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCe
Confidence            57888888887  8886432  3589999999977 677877788999999999999887

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.28  E-value=0.0052  Score=46.17  Aligned_cols=44  Identities=34%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             cCChhhhccccccEeecCCCCCcccChh-hhcCcccceeccCCCCCC
Q 037371            5 KLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFL   50 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~   50 (330)
                      ++|..+.  .+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.+.
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6675544  3577777777777777663 466777777777777553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.92  E-value=0.0057  Score=49.41  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=30.9

Q ss_pred             hCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh--HHHhhccccccCceEEEEE
Q 037371           58 ISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus        58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l  134 (330)
                      +..-+.|+.|++++|.+.+.     +      ...+.+.+..-+.|++|+++.|.+..  ...+...+....+|++|++
T Consensus        66 L~~N~~L~~L~L~~n~igd~-----g------a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L  133 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDS-----E------ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA  133 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHH-----H------HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred             HhhCCCcCEEEccCCCCChH-----H------HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence            44445566666666555100     0      12234444455556666666555422  3333333333444666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.68  E-value=0.11  Score=41.90  Aligned_cols=115  Identities=12%  Similarity=0.037  Sum_probs=77.9

Q ss_pred             hhccccccEeecCCC-CCc-----ccChhhhcCcccceeccCCCCCCCC---CchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371           10 ISNLVSLHHLDLSRT-NIT-----GLPQELKALEKLRYLNLDHTRFLSI---IPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus        10 l~~l~~L~~L~L~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~---~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      +.+-+.|++|+|+++ .+.     .+-..+..-..|+.|+|++|.+...   .-..++..-+.|++|++++|.+ ..   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I-g~---  112 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL-TP---  112 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC-CH---
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC-CH---
Confidence            344578999999985 766     3445677788899999999977421   1122355678899999999998 22   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEe---ch--hhHHHhhccccccCceEEEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFR---SS--LAVQKFLKYPKLVSITQSVWVE  135 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~~--~~~~~~~~~~~~~~~L~~L~l~  135 (330)
                       .|      ...+.+.+..-+.|++|+++++   .+  ..-..+......-..|.+|++.
T Consensus       113 -~G------a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          113 -EL------LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             -HH------HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             -HH------HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence             11      3345667778888999999754   22  2233444444556678888873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
            S +S+L  L  L  +   ++ +   L  L  + +L+  H +   + P   ++  +++  
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQ 377

Query: 67  LRL 69
           L L
Sbjct: 378 LGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 7   PSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDH 46
            S ++NL +++ L      I+ L   L  L ++  L L+ 
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
           ++L  +  L   R  I  +   ++ L  L  +N  + +   I P   +   +KL  +
Sbjct: 40 QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDI 93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 6   LPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIP 54
           LP G++ L  LH L++S  N+ G   +   L++       + + L   P
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 17  HHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           + LDL    I G LPQ L  L+ L  LN+        IP        + +V   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAY 298

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 48/284 (16%), Positives = 91/284 (32%), Gaps = 14/284 (4%)

Query: 1   LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLIS 59
           L L K+P  +        LDL    IT +   + K L+ L  L L + +   I  P   +
Sbjct: 20  LGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFA 76

Query: 60  GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119
              KLE L L       + E+   ++            +     N L+      L     
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 120 LKYPKLV-SITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKK 178
                   +      +            +      +L EL L  +K+ ++   S + +  
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 179 LFRNGFRSLNTVVLRSCRGKDLTWL-VFVQNLKQLNMQGFTMEEIISVDKLS----DISE 233
           L + G    +   + +    +   L     N  +L      + +   +  +     +IS 
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC 277
           I     N F    Y T     +  S++ NP+ + +++    F C
Sbjct: 257 I---GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-STFRC 296

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
          +S + S   ++  + N+T LP +L        L+L     L       +  +++L  L L
Sbjct: 6  VSKVASHLEVNCDKRNLTALPPDLPKD--TTILHLSENL-LYTFSLATLMPYTRLTQLNL 62

Query: 70 LSRGRW 75
                
Sbjct: 63 DRAELT 68

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 8   SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDH 46
           S +++L +L  + L    I+ +   L     L  + L +
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
           ++NL  L  L      I+ +   L +L  L  ++L + +   + P   ++  S L ++ L
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTL 224

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPP 55
                    LD+SRT I  LP   L+ L+KLR  +  +   L  +P 
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT 240

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 22/85 (25%)

Query: 7  PSGISNLVSLHHLDLSRTNITGLPQELKALEKL----------------------RYLNL 44
             +  L+ + HLDLS   +  LP  L AL  L                      + L L
Sbjct: 13 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 72

Query: 45 DHTRFLSIIPPQLISGFSKLEVLRL 69
           + R       Q +    +L +L L
Sbjct: 73 CNNRLQQSAAIQPLVSCPRLVLLNL 97

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 3   LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS 62
           L +LP+    L     L  S  ++  +P+  +    L+ L++++        P +     
Sbjct: 296 LIELPALPPRL---ERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREF--PDIPESVE 347

Query: 63  KLEV 66
            L +
Sbjct: 348 DLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 34/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)

Query: 1   LSLSKL-PSGISNLVS--LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQL 57
           L+   L P     L+S  +      R+ +     E  +  ++++++L ++         +
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66

Query: 58  ISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ 117
           +S  SKL+ L                      ++P++  L    +L  L+ S  S  +  
Sbjct: 67  LSQCSKLQNLS---------------LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVK 177
                    S    + +            + +A++         S    +    S     
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-YRKNLQKSDLSTL 170

Query: 178 KLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237
                    L+       +         +  L+ L++         ++ +L +I      
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP----- 225

Query: 238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRR 294
                  L+ L ++      ++       P L+     +C     +   +   K  +
Sbjct: 226 ------TLKTLQVFGIVPDGTLQLLKEALPHLQ----INCSHFTTIARPTIGNKKNQ 272

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 2   SLSKLPSGISNLVSLHHLDLSRTNIT--GLPQELKALE----KLRYLNLDHTRFLSIIPP 55
           S S L + +    SL  LDLS   +   G+ Q ++++      L  L L    +   +  
Sbjct: 385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

Query: 56  QLISGFSKLEVLRLLS 71
           +L +       LR++S
Sbjct: 445 RLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 1  LSLSKLPSGISNLVSLHHLDLSRTNITG-----LPQELKALEKLRYLNLDHTRF----LS 51
          LS ++    +  L     + L    +T      +   L+    L  LNL         + 
Sbjct: 14 LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73

Query: 52 IIPPQLISGFSKLEVLRLLSRGRW 75
           +   L +   K++ L L +    
Sbjct: 74 CVLQGLQTPSCKIQKLSLQNCCLT 97

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 2  SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRF 49
           + K+ + +S L +  HL LS  NI  +   L  +E LR L+L     
Sbjct: 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 10  ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNL 44
           ++ L  L +L LS+ +I+ L   L  L+ L  L L
Sbjct: 174 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.05

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.2e-18  Score=150.10  Aligned_cols=239  Identities=17%  Similarity=0.129  Sum_probs=173.8

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      +++++|..+.  +++++|+|++|+++++|+ .+.++++|++|++++|.+....|. ++.++++|++|++++|++ +.   
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l~~L~~L~l~~n~l-~~---   93 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQL-KE---   93 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCC-SB---
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh-hhhCCCccCEecccCCcc-Cc---
Confidence            5889998875  689999999999999987 689999999999999988544444 499999999999999988 22   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                                  ++.  .....++.|.+..|....+....  .........+................+..+++|+.+++
T Consensus        94 ------------l~~--~~~~~l~~L~~~~n~l~~l~~~~--~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          94 ------------LPE--KMPKTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             ------------CCS--SCCTTCCEEECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             ------------Ccc--chhhhhhhhhccccchhhhhhhh--hhccccccccccccccccccCCCccccccccccCcccc
Confidence                        111  12346677776666554332211  11223344455421111122233446788899999999


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccccccccccCc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSE  238 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~  238 (330)
                      .++.+..+.           ...+++|++|++++|....  ...+.+++.++.|+++++.+..+.+            ..
T Consensus       158 ~~n~l~~l~-----------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~------------~~  214 (305)
T d1xkua_         158 ADTNITTIP-----------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN------------GS  214 (305)
T ss_dssp             CSSCCCSCC-----------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT------------TT
T ss_pred             ccCCccccC-----------cccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc------------cc
Confidence            977666442           2346889999999994433  3467889999999999999988865            26


Q ss_pred             cccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371          239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSS  288 (330)
Q Consensus       239 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  288 (330)
                      +..+++|++|+++++ .++.++.....+++|++|+++++ +++.++...+
T Consensus       215 ~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f  262 (305)
T d1xkua_         215 LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF  262 (305)
T ss_dssp             GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred             ccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhc
Confidence            778899999999999 78888776677999999999995 7988876443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=8.2e-20  Score=159.96  Aligned_cols=237  Identities=16%  Similarity=0.163  Sum_probs=126.8

Q ss_pred             cCChhhhccccccEeecCC-CCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371            5 KLPSGISNLVSLHHLDLSR-TNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus         5 ~lp~~l~~l~~L~~L~L~~-~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      .+|.+++++++|++|+|++ |.+. .+|..++++++|++|++++|++.+..+.. +..+.+|+++++++|.+        
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~l~l~~N~~--------  137 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNAL--------  137 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEE--------
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc-ccchhhhcccccccccc--------
Confidence            3556666666666666654 4444 56666666666666666666554433433 55566666666666555        


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEEEechhh-HHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA-VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG  161 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (330)
                             ....+..+.++++++.+++++|.... ++....  .....++.+.+....  ........+..+.. ..+++.
T Consensus       138 -------~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~--~l~~l~~~l~~~~n~--l~~~~~~~~~~l~~-~~l~l~  205 (313)
T d1ogqa_         138 -------SGTLPPSISSLPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNR--LTGKIPPTFANLNL-AFVDLS  205 (313)
T ss_dssp             -------ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--CCCTTCCEEECCSSE--EEEECCGGGGGCCC-SEEECC
T ss_pred             -------cccCchhhccCcccceeeccccccccccccccc--ccccccccccccccc--cccccccccccccc-cccccc
Confidence                   33445556666666666666554321 111000  111112333321111  11222222333322 234444


Q ss_pred             ccCcceeeeCcccccCccCCCCCCCccEEEEeccccc-ccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371          162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK-DLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN  240 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      .+......        +.....+++++.+++.+|.+. .++.++.+++|+.|+|++|++.+..|.            .++
T Consensus       206 ~~~~~~~~--------~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~------------~l~  265 (313)
T d1ogqa_         206 RNMLEGDA--------SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLT  265 (313)
T ss_dssp             SSEEEECC--------GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG------------GGG
T ss_pred             cccccccc--------cccccccccccccccccccccccccccccccccccccCccCeecccCCh------------HHh
Confidence            22222111        112356677888888888443 345677788888888888887754441            677


Q ss_pred             cCcccceeecccccccc-cccCCCCCCCCccEEEEccCCCCCCCC
Q 037371          241 IFARLEYLTMWRGTNVK-SVYPNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       241 ~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                      .+++|++|+++++ ++. .++ ....+++|+.+.+.+.+.+...|
T Consensus       266 ~L~~L~~L~Ls~N-~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         266 QLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GCTTCCEEECCSS-EEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             CCCCCCEEECcCC-cccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence            7888888888887 444 444 23446677777777766565544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=148.48  Aligned_cols=192  Identities=17%  Similarity=0.125  Sum_probs=91.2

Q ss_pred             cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371           15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM   94 (330)
Q Consensus        15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   94 (330)
                      .+.+.+-++++++.+|+.+.  +++++|++++|.+ ..+|..++.++++|++|++++|.+ +.                .
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i-~~l~~~~f~~l~~L~~L~L~~N~l-~~----------------l   70 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL-TK----------------L   70 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSCC-CE----------------E
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcC-CCcCHHHhhccccccccccccccc-cc----------------c
Confidence            33444555555666665442  3466666666654 444444456666666666666655 11                1


Q ss_pred             HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcc
Q 037371           95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDST  173 (330)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  173 (330)
                      ..++.+++|++|++++|.+.....   .......|+.|++ +..   ........+..+.+++.|+++++.++.+.....
T Consensus        71 ~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~  144 (266)
T d1p9ag_          71 QVDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNR---LTSLPLGALRGLGELQELYLKGNELKTLPPGLL  144 (266)
T ss_dssp             ECCSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSC---CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccccccccccccccccccccccc---ccccccccccccccccc---cceeeccccccccccccccccccccceeccccc
Confidence            123345556666655554321110   1111222333333 111   122222334455555666555555554432222


Q ss_pred             cccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecc
Q 037371          174 EEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMW  251 (330)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  251 (330)
                              ..+++|+.|++++|.++.++  .+..+++|++|+|++|.++.++.             .+..+++|+.|+++
T Consensus       145 --------~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~-------------~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         145 --------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-------------GFFGSHLLPFAFLH  203 (266)
T ss_dssp             --------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCCCSEEECC
T ss_pred             --------cccccchhcccccccccccCccccccccccceeecccCCCcccCh-------------hHCCCCCCCEEEec
Confidence                    34555666666666444433  34555666666666655555533             33345555566555


Q ss_pred             cc
Q 037371          252 RG  253 (330)
Q Consensus       252 ~~  253 (330)
                      ++
T Consensus       204 ~N  205 (266)
T d1p9ag_         204 GN  205 (266)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.3e-18  Score=144.85  Aligned_cols=197  Identities=14%  Similarity=0.132  Sum_probs=141.4

Q ss_pred             hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           34 KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        34 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                      .+...+..++.+++.+ +.+|+. +.  +++++|++++|.+               .......+.++++|++|++++|.+
T Consensus         7 ~~~~~~~~v~C~~~~L-~~iP~~-lp--~~l~~L~Ls~N~i---------------~~l~~~~f~~l~~L~~L~L~~N~l   67 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNL-TALPPD-LP--KDTTILHLSENLL---------------YTFSLATLMPYTRLTQLNLDRAEL   67 (266)
T ss_dssp             ECSTTCCEEECTTSCC-SSCCSC-CC--TTCCEEECTTSCC---------------SEEEGGGGTTCTTCCEEECTTSCC
T ss_pred             cccCCCeEEEccCCCC-CeeCcC-cC--cCCCEEECcCCcC---------------CCcCHHHhhccccccccccccccc
Confidence            3455666778888766 678875 43  5799999999998               334456788999999999999876


Q ss_pred             hhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe
Q 037371          114 LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR  193 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  193 (330)
                      ..++.    .....+|+.|++.-+.  .. .....+..+++|+.|+++.+....+....        ...+.++++|.+.
T Consensus        68 ~~l~~----~~~l~~L~~L~Ls~N~--l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~l~~l~~L~l~  132 (266)
T d1p9ag_          68 TKLQV----DGTLPVLGTLDLSHNQ--LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--------LRGLGELQELYLK  132 (266)
T ss_dssp             CEEEC----CSCCTTCCEEECCSSC--CS-SCCCCTTTCTTCCEEECCSSCCCCCCSST--------TTTCTTCCEEECT
T ss_pred             ccccc----cccccccccccccccc--cc-ccccccccccccccccccccccceeeccc--------ccccccccccccc
Confidence            64432    2345668888882222  12 22345677888888888866666553332        2567788888888


Q ss_pred             cccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccE
Q 037371          194 SCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKK  271 (330)
Q Consensus       194 ~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  271 (330)
                      +|.+..++  .+..+++|+.|++++|.+..+.+            ..+..+++|++|+++++ .++.++.....+++|+.
T Consensus       133 ~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~------------~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~  199 (266)
T d1p9ag_         133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------------GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF  199 (266)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSE
T ss_pred             ccccceeccccccccccchhcccccccccccCc------------cccccccccceeecccC-CCcccChhHCCCCCCCE
Confidence            88666544  45678888888888888887765            25677888888888887 57788777777888888


Q ss_pred             EEEccC
Q 037371          272 IQVFHC  277 (330)
Q Consensus       272 L~i~~c  277 (330)
                      |.+.+.
T Consensus       200 L~L~~N  205 (266)
T d1p9ag_         200 AFLHGN  205 (266)
T ss_dssp             EECCSC
T ss_pred             EEecCC
Confidence            888864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.8e-17  Score=148.42  Aligned_cols=241  Identities=16%  Similarity=0.253  Sum_probs=142.2

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      +++++ ++++.+++|++|++++|+++.+|. ++++++|++|++++|.+ ..+++  ++++++|+.|+++++.+ +.....
T Consensus        55 ~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i-~~i~~--l~~l~~L~~L~~~~~~~-~~~~~~  128 (384)
T d2omza2          55 GIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP--LANLTNLTGLTLFNNQI-TDIDPL  128 (384)
T ss_dssp             CCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC-CCCGGG
T ss_pred             CCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccc-ccccc--ccccccccccccccccc-cccccc
Confidence            45566 368888999999999998888864 88899999999999877 45555  78899999999888776 221000


Q ss_pred             cCcc-------------------------------------------------ccCCchhhHHHhccCcCcceeeEEEec
Q 037371           82 EGSV-------------------------------------------------LCDDAEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        82 ~~~~-------------------------------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                      ....                                                 ..............+++++.+.++++.
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~  208 (384)
T d2omza2         129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ  208 (384)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc
Confidence            0000                                                 000000111234455566666666555


Q ss_pred             hhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEE
Q 037371          113 SLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVV  191 (330)
Q Consensus       113 ~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  191 (330)
                      ...+...    ..+.+|++|++ ++..   .  ....+..+++|+.|+++.+.++.+.          +...+++|++|+
T Consensus       209 i~~~~~~----~~~~~L~~L~l~~n~l---~--~~~~l~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~  269 (384)
T d2omza2         209 ISDITPL----GILTNLDELSLNGNQL---K--DIGTLASLTNLTDLDLANNQISNLA----------PLSGLTKLTELK  269 (384)
T ss_dssp             CCCCGGG----GGCTTCCEEECCSSCC---C--CCGGGGGCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEE
T ss_pred             cCCCCcc----cccCCCCEEECCCCCC---C--CcchhhcccccchhccccCccCCCC----------cccccccCCEee
Confidence            4433221    22445677766 3321   1  1234666777777777755555332          123345555555


Q ss_pred             EecccccccC----------------------cccccCCccEEEEecccccccccccccccccccccCccccCcccceee
Q 037371          192 LRSCRGKDLT----------------------WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLT  249 (330)
Q Consensus       192 L~~~~~~~l~----------------------~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  249 (330)
                      ++++.+..++                      .+..+++++.|+++++.+.++.              .+..+++|++|+
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--------------~l~~l~~L~~L~  335 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--------------PVSSLTKLQRLF  335 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--------------GGGGCTTCCEEE
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--------------ccccCCCCCEEE
Confidence            5555444333                      3444555555555555554441              356678888888


Q ss_pred             cccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371          250 MWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       250 l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                      +++| .++.++ ....+++|++|++++| +++.++
T Consensus       336 L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         336 FANN-KVSDVS-SLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCCh
Confidence            8887 566554 2344788888888775 666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=6.1e-18  Score=141.01  Aligned_cols=175  Identities=18%  Similarity=0.266  Sum_probs=95.6

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      .+..+.+|++|++.+|+++.++ .+..|++|++|++++|.+ ..+++  ++.+++|+.+++++|.+ +            
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i-~~~~~--l~~l~~l~~l~~~~n~~-~------------   98 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAP--LKNLTKITELELSGNPL-K------------   98 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCCSCCEEECCSCCC-S------------
T ss_pred             CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCcee-ecccc--ccccccccccccccccc-c------------
Confidence            3466778888888888887774 577888888888888866 34444  67888888888887766 1            


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCccee
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEM  168 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  168 (330)
                          -...+..+++|+.+.++.+.......+    .....+..+.+....    ......+..+++|++|+++++.++..
T Consensus        99 ----~i~~l~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2          99 ----NVSAIAGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             ----CCGGGTTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSC----CCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             ----ccccccccccccccccccccccccchh----ccccchhhhhchhhh----hchhhhhccccccccccccccccccc
Confidence                122466777777777665543322211    112223333331111    11112244455555555554443311


Q ss_pred             eeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371          169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                                .+...+++|++|++++|.+++++.++++++|++|+|++|.++++
T Consensus       167 ----------~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         167 ----------TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             ----------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             ----------hhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCC
Confidence                      11234455555555555544444455555555555555555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=8.6e-17  Score=139.85  Aligned_cols=231  Identities=15%  Similarity=0.180  Sum_probs=162.7

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |.++++|+ .|.++++|++|++++|.+..+ |..+..+++|++|++++|++ ..+|..   ....++.|++..|.+    
T Consensus        41 N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l-~~l~~~---~~~~l~~L~~~~n~l----  112 (305)
T d1xkua_          41 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEK---MPKTLQELRVHENEI----  112 (305)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSS---CCTTCCEEECCSSCC----
T ss_pred             CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc-CcCccc---hhhhhhhhhccccch----
Confidence            57889997 599999999999999999977 55789999999999999977 667753   356789999999887    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQE  157 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~  157 (330)
                                 .......+.....++.+....+.................|+.+.+ ++..   ...   ....+++|+.
T Consensus       113 -----------~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l---~~l---~~~~~~~L~~  175 (305)
T d1xkua_         113 -----------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTI---PQGLPPSLTE  175 (305)
T ss_dssp             -----------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC---CSC---CSSCCTTCSE
T ss_pred             -----------hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc---ccc---CcccCCccCE
Confidence                       223444566666777776665543322222223333455777776 3322   111   1223578888


Q ss_pred             EEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccc
Q 037371          158 LELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEII  235 (330)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  235 (330)
                      |+++++.........        ...++.+++|.+++|.+..+  .++.++++|++|+|++|.++.++.           
T Consensus       176 L~l~~n~~~~~~~~~--------~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-----------  236 (305)
T d1xkua_         176 LHLDGNKITKVDAAS--------LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----------  236 (305)
T ss_dssp             EECTTSCCCEECTGG--------GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-----------
T ss_pred             EECCCCcCCCCChhH--------hhccccccccccccccccccccccccccccceeeeccccccccccc-----------
Confidence            888866666553333        25677888999988866553  367888999999999988887744           


Q ss_pred             cCccccCcccceeecccccccccccCCCC-------CCCCccEEEEccCC
Q 037371          236 GSEHNIFARLEYLTMWRGTNVKSVYPNPL-------PFPKLKKIQVFHCR  278 (330)
Q Consensus       236 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~i~~c~  278 (330)
                        .+..+++|++|+++++ +++.+.....       ..++|+.|.+.+++
T Consensus       237 --~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         237 --GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             --TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             --ccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence              6777889999999987 6777644322       25678888888854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=142.92  Aligned_cols=211  Identities=17%  Similarity=0.203  Sum_probs=133.6

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      +++++|..+.  ..+++|+|++|+++.+|. .+.++++|++|++++|.+ ..++..++..+..++.++...+..      
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l-~~i~~~~~~~~~~~~~l~~~~~~~------   92 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ------   92 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTT------
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccc-cccccccccccccccccccccccc------
Confidence            4778887765  568899999998888876 578889999999988876 445554577788888887654333      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                      +        ....+..+..+++|++|+++.|.......  ........|+.+++..+.  ........+..+++|+.|++
T Consensus        93 ~--------~~l~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          93 L--------RSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             C--------CCCCTTTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred             c--------ccccchhhcccccCCEEecCCcccccccc--cccchhcccchhhhcccc--ccccChhHhccccchhhccc
Confidence            0        22234557788888888887765432211  112234445566553222  23333445666667777777


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccCc
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSE  238 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~  238 (330)
                      +.+.++.+....+        ..+++|+++++.+|.+..+  .++.++++|++|++++|.+..+++.            .
T Consensus       161 ~~N~l~~l~~~~f--------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~------------~  220 (284)
T d1ozna_         161 HGNRISSVPERAF--------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE------------A  220 (284)
T ss_dssp             CSSCCCEECTTTT--------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH------------H
T ss_pred             ccCcccccchhhh--------ccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc------------c
Confidence            7666665544332        4566777777777744443  3466677777777777666666542            4


Q ss_pred             cccCcccceeecccc
Q 037371          239 HNIFARLEYLTMWRG  253 (330)
Q Consensus       239 ~~~~~~L~~L~l~~~  253 (330)
                      ++.+++|++|++++.
T Consensus       221 ~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         221 LAPLRALQYLRLNDN  235 (284)
T ss_dssp             HTTCTTCCEEECCSS
T ss_pred             cccccccCEEEecCC
Confidence            556667777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.2e-16  Score=142.95  Aligned_cols=237  Identities=18%  Similarity=0.267  Sum_probs=162.3

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      ...+.+|++|++++++++.+ +++..+++|++|++++|++ ..+|+  ++++++|++|++++|.+               
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l-~~l~~--l~~L~~L~~L~L~~n~i---------------  100 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQI---------------  100 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC---------------
T ss_pred             HHHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcC-CCCcc--ccCCccccccccccccc---------------
Confidence            45678899999999999988 4788999999999999977 67776  99999999999999988               


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhcccc---------------------------------------------
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPK---------------------------------------------  124 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------------------------------------  124 (330)
                      ..  ...++.+++|+.|++.++.............                                             
T Consensus       101 ~~--i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (384)
T d2omza2         101 AD--ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE  178 (384)
T ss_dssp             CC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred             cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence            21  2247888999988887655433222111100                                             


Q ss_pred             ----------------ccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCcc
Q 037371          125 ----------------LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLN  188 (330)
Q Consensus       125 ----------------~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  188 (330)
                                      .+..++.+.+...    ..........+++|+.|+++++.++++.          ....+++|+
T Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~l~l~~n----~i~~~~~~~~~~~L~~L~l~~n~l~~~~----------~l~~l~~L~  244 (384)
T d2omza2         179 RLDISSNKVSDISVLAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDIG----------TLASLTNLT  244 (384)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSS----CCCCCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCS
T ss_pred             cccccccccccccccccccccceeeccCC----ccCCCCcccccCCCCEEECCCCCCCCcc----------hhhcccccc
Confidence                            0011111111000    0011123455678888888877766442          235689999


Q ss_pred             EEEEecccccccCcccccCCccEEEEecccccccccccccccc-----cccc---cCccccCcccceeeccccccccccc
Q 037371          189 TVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDI-----SEII---GSEHNIFARLEYLTMWRGTNVKSVY  260 (330)
Q Consensus       189 ~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-----~~~~---~~~~~~~~~L~~L~l~~~~~l~~l~  260 (330)
                      .|++++|.+..++.+..+++|+.|+++++.+..+.+-......     ..+.   ......+++++.|+++++ +++++.
T Consensus       245 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~  323 (384)
T d2omza2         245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDIS  323 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCG
T ss_pred             hhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCc
Confidence            9999999888888899999999999999877766432111110     0000   013566788999999987 666654


Q ss_pred             CCCCCCCCccEEEEccCCCCCCCC
Q 037371          261 PNPLPFPKLKKIQVFHCRQLKKLP  284 (330)
Q Consensus       261 ~~~~~~~~L~~L~i~~c~~L~~lp  284 (330)
                      . ...+++|++|++++| +++.+|
T Consensus       324 ~-l~~l~~L~~L~L~~n-~l~~l~  345 (384)
T d2omza2         324 P-VSSLTKLQRLFFANN-KVSDVS  345 (384)
T ss_dssp             G-GGGCTTCCEEECCSS-CCCCCG
T ss_pred             c-cccCCCCCEEECCCC-CCCCCh
Confidence            2 455999999999998 787776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=9.4e-17  Score=130.92  Aligned_cols=64  Identities=27%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371          149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI  222 (330)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  222 (330)
                      +..+++|+.|+++++.+..+.          ....+++|++|++.+|.+++++.++++++|++|++++|.++++
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~----------~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISDIS----------ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             cchhhhhHHhhhhhhhhcccc----------cccccccccccccccccccCCccccCCCCCCEEECCCCCCCCC
Confidence            555666666666655554221          1244566677777666666666666667777777766666555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=1.9e-17  Score=144.68  Aligned_cols=228  Identities=15%  Similarity=0.165  Sum_probs=166.5

Q ss_pred             cccEeecCCCCCc---ccChhhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           15 SLHHLDLSRTNIT---GLPQELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        15 ~L~~L~L~~~~~~---~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      ++..|+|+++.+.   .+|..++++++|++|++++ |.+.+.+|.. ++++++|++|++++|.+               .
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l---------------~  114 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNV---------------S  114 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECC---------------E
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccc---------------c
Confidence            6889999999877   5899999999999999986 6787889987 99999999999999998               4


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCc-cEEEEEccCcceee
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL-QELELGSSKLEEMK  169 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~  169 (330)
                      ...+..+..+.+|+.++++.|.....  +.........++.+++.-..  ........+..+..+ +.+++++++++...
T Consensus       115 ~~~~~~~~~~~~L~~l~l~~N~~~~~--~p~~l~~l~~L~~l~l~~n~--l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         115 GAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccchhhhccccccccccccc--CchhhccCcccceeeccccc--cccccccccccccccccccccccccccccc
Confidence            45566788899999999988764321  11122334557777772222  233444556666665 67777777776554


Q ss_pred             eCcccccCccCCCCCCCccEEEEeccccc-c-cCcccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGK-D-LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY  247 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  247 (330)
                      +...        ..+ ....+++.++... . ...+..+++|+.+++.++.+...++             .++.+++|+.
T Consensus       191 ~~~~--------~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-------------~~~~~~~L~~  248 (313)
T d1ogqa_         191 PPTF--------ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------KVGLSKNLNG  248 (313)
T ss_dssp             CGGG--------GGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------------GCCCCTTCCE
T ss_pred             cccc--------ccc-ccccccccccccccccccccccccccccccccccccccccc-------------cccccccccc
Confidence            3332        223 3457888877332 2 3356789999999999987766655             6777899999


Q ss_pred             eecccccccccccCCCCCCCCccEEEEccCCCCC-CCCC
Q 037371          248 LTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLK-KLPL  285 (330)
Q Consensus       248 L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~-~lp~  285 (330)
                      |+++++.-...++.....+++|++|+++++ ++. .+|.
T Consensus       249 L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~  286 (313)
T d1ogqa_         249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ  286 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred             ccCccCeecccCChHHhCCCCCCEEECcCC-cccccCCC
Confidence            999998433367766777999999999995 565 5774

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.4e-16  Score=131.10  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=46.5

Q ss_pred             ccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccc
Q 037371          148 HLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDK  227 (330)
Q Consensus       148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~  227 (330)
                      .+..+++++.++++++.++...          ....+++|+++++++|.+..++.+.++++|+.|++++|.++++ +   
T Consensus       129 ~l~~l~~l~~l~~~~n~l~~~~----------~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l-~---  194 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNNKITDIT----------VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-R---  194 (210)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-G---
T ss_pred             cccccccccccccccccccccc----------cccccccccccccccccccccccccCCCCCCEEECCCCCCCCC-h---
Confidence            4555666666666655544221          1234566666666666555555566666666666666666554 1   


Q ss_pred             cccccccccCccccCcccceeecc
Q 037371          228 LSDISEIIGSEHNIFARLEYLTMW  251 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~  251 (330)
                                .+..+++|++|+++
T Consensus       195 ----------~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         195 ----------ALAGLKNLDVLELF  208 (210)
T ss_dssp             ----------GGTTCTTCSEEEEE
T ss_pred             ----------hhcCCCCCCEEEcc
Confidence                      34556666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=132.58  Aligned_cols=95  Identities=16%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccC-CCCCccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSR-GRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~-~~~~~~~   79 (330)
                      +++++|+.+.  +++++|++++|+++.+|. .|.++++|++|++++|.+...++..++..+++++++++..+ .+     
T Consensus        19 ~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l-----   91 (242)
T d1xwdc1          19 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-----   91 (242)
T ss_dssp             SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC-----
T ss_pred             CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc-----
Confidence            4667776654  467788888887777766 46778888888887776655555555777778888776543 33     


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                                ....+..+..+++|+++.+.++..
T Consensus        92 ----------~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          92 ----------LYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             ----------CEECTTSEECCTTCCEEEEESCCC
T ss_pred             ----------cccccccccccccccccccchhhh
Confidence                      223344567777777777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=5.3e-16  Score=129.02  Aligned_cols=176  Identities=22%  Similarity=0.286  Sum_probs=137.3

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |++++++ +++.+++|++|++++|.+..++. +..+++|+++++++|.+ +.++.  +.++++|+.++++++..      
T Consensus        51 ~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~~--l~~l~~L~~l~l~~~~~------  119 (227)
T d1h6ua2          51 TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSA--IAGLQSIKTLDLTSTQI------  119 (227)
T ss_dssp             SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGG--GTTCTTCCEEECTTSCC------
T ss_pred             CCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccc-ccccc--ccccccccccccccccc------
Confidence            4577885 79999999999999999987754 89999999999999966 56665  88999999999999877      


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL  160 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  160 (330)
                                 .....+...+.++.+.++.+.......+    ..+..|+.|.+....  ..  ....+.++++|+.|++
T Consensus       120 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~--~~--~~~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         120 -----------TDVTPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQ--VS--DLTPLANLSKLTTLKA  180 (227)
T ss_dssp             -----------CCCGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSC--CC--CCGGGTTCTTCCEEEC
T ss_pred             -----------cccchhccccchhhhhchhhhhchhhhh----ccccccccccccccc--cc--cchhhcccccceeccc
Confidence                       1223466778888888877665433322    335668888883222  12  2334788999999999


Q ss_pred             EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEec
Q 037371          161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG  216 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~  216 (330)
                      ++|+++++.          +...+++|++|+|++|.++.++.++++++|+.|+|++
T Consensus       181 s~n~l~~l~----------~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKISDIS----------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCCCG----------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCccCCCh----------hhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            988887542          1357899999999999998888899999999999975

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.9e-15  Score=124.10  Aligned_cols=167  Identities=19%  Similarity=0.263  Sum_probs=131.5

Q ss_pred             hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371           11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA   90 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   90 (330)
                      ..+..|++|++++|.+..++ .+..+++|++|++++|++ ..++.  ++.+++|++|++++|.+               .
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i-~~l~~--~~~l~~L~~L~l~~n~i---------------~  103 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKV---------------K  103 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC---------------C
T ss_pred             HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccc-cCccc--cccCccccccccccccc---------------c
Confidence            45788999999999999886 488999999999999977 56665  78999999999999988               2


Q ss_pred             hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371           91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI  170 (330)
Q Consensus        91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  170 (330)
                        ....+..+++|+.|++.++....+..+.    ....++.+++....  ..  ....+..+++|+.+++++++++++. 
T Consensus       104 --~l~~l~~l~~L~~L~l~~~~~~~~~~l~----~l~~l~~l~~~~n~--l~--~~~~~~~l~~L~~l~l~~n~l~~i~-  172 (210)
T d1h6ta2         104 --DLSSLKDLKKLKSLSLEHNGISDINGLV----HLPQLESLYLGNNK--IT--DITVLSRLTKLDTLSLEDNQISDIV-  172 (210)
T ss_dssp             --CGGGGTTCTTCCEEECTTSCCCCCGGGG----GCTTCCEEECCSSC--CC--CCGGGGGCTTCSEEECCSSCCCCCG-
T ss_pred             --cccccccccccccccccccccccccccc----cccccccccccccc--cc--ccccccccccccccccccccccccc-
Confidence              1235888999999999888765444332    24557777773222  12  2345778899999999988877542 


Q ss_pred             CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEec
Q 037371          171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG  216 (330)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~  216 (330)
                               +...+++|++|++++|.+++++.+.++++|++|+|++
T Consensus       173 ---------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 ---------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             ---------cccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence                     2367899999999999888888899999999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.6e-17  Score=140.28  Aligned_cols=184  Identities=16%  Similarity=0.126  Sum_probs=92.7

Q ss_pred             hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           34 KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        34 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                      ....+|++|++++|.+.......++.++++|++|++.+|.+               .......+.++++|++|+++++..
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l---------------~~~~~~~l~~~~~L~~L~Ls~c~~  107 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL---------------SDPIVNTLAKNSNLVRLNLSGCSG  107 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC---------------CHHHHHHHTTCTTCSEEECTTCBS
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC---------------CcHHHHHHhcCCCCcCcccccccc
Confidence            34556677777666554333333456666777777776665               445556666666677666665432


Q ss_pred             hhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccc-cccCccEEEEE-c-cCcceeeeCcccccCccCCCCCCCcc
Q 037371          114 LAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLA-YMENLQELELG-S-SKLEEMKIDSTEEVKKLFRNGFRSLN  188 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~-~l~~L~~L~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~L~  188 (330)
                      .....+......+++|++|++ +|..  ...... ..+. ..++|+.|+++ + ..+++......       ...+++|+
T Consensus       108 itd~~l~~l~~~~~~L~~L~ls~c~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-------~~~~~~L~  178 (284)
T d2astb2         108 FSEFALQTLLSSCSRLDELNLSWCFD--FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-------VRRCPNLV  178 (284)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTT--CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-------HHHCTTCS
T ss_pred             ccccccchhhHHHHhccccccccccc--cccccchhhhcccccccchhhhccccccccccccccc-------cccccccc
Confidence            111111111223455666666 5543  121111 1122 23566666665 2 22222111110       12356666


Q ss_pred             EEEEecc-cccc--cCcccccCCccEEEEec-ccccccccccccccccccccCccccCcccceeecccc
Q 037371          189 TVVLRSC-RGKD--LTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG  253 (330)
Q Consensus       189 ~L~L~~~-~~~~--l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (330)
                      +|++++| .+++  +..+.++++|++|+|++ ..+.+...            ..+..+|+|+.|++.+|
T Consensus       179 ~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l------------~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS
T ss_pred             ccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH------------HHHhcCCCCCEEeeeCC
Confidence            6776666 4433  34556666777777766 44443322            13455666777766666

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.7e-15  Score=122.12  Aligned_cols=164  Identities=18%  Similarity=0.270  Sum_probs=130.0

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      ...+.++++|+++++++..++ .+..+++|++|++++|.+ ..++.  ++++++|++|++++|.+ .             
T Consensus        36 ~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l-~~~~~--l~~l~~L~~L~l~~n~~-~-------------   97 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQI-A-------------   97 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC-C-------------
T ss_pred             HHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccc-cCccc--ccCCccccccccccccc-c-------------
Confidence            456889999999999999885 588999999999999977 55665  89999999999999887 1             


Q ss_pred             chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK  169 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  169 (330)
                         ....+..+++|+.|+++++.......+    ..+..|+.|++....  ..  ....+..+++|+.|++.+++++++.
T Consensus        98 ---~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~n~--l~--~~~~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2          98 ---DITPLANLTNLTGLTLFNNQITDIDPL----KNLTNLNRLELSSNT--IS--DISALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             ---CCGGGTTCTTCSEEECCSSCCCCCGGG----TTCTTCSEEECCSSC--CC--CCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred             ---ccccccccccccccccccccccccccc----chhhhhHHhhhhhhh--hc--ccccccccccccccccccccccCCc
Confidence               122478999999999998776544332    235668888882222  12  2346888999999999988887542


Q ss_pred             eCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEE
Q 037371          170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQL  212 (330)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L  212 (330)
                                +...+++|++|++++|.+++++.++++++|+.|
T Consensus       167 ----------~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         167 ----------PLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ----------GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             ----------cccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence                      246789999999999999888889999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=130.53  Aligned_cols=193  Identities=17%  Similarity=0.152  Sum_probs=150.7

Q ss_pred             CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      |+++++|. .|.++++|++|+++++.+..++. .+..+..++.+++..+.....++...++++++|++|++++|.+    
T Consensus        42 N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~----  117 (284)
T d1ozna_          42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL----  117 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC----
T ss_pred             CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccc----
Confidence            67888996 59999999999999999996665 4567888999887655555677665699999999999999888    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 .......+....+|+.+++.+|.+..+..  ........|+.|++.-..  ........+.++++|+.+
T Consensus       118 -----------~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--~~f~~~~~L~~L~l~~N~--l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         118 -----------QELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             -----------CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEE
T ss_pred             -----------ccccccccchhcccchhhhccccccccCh--hHhccccchhhcccccCc--ccccchhhhccccccchh
Confidence                       33445567788899999999987755431  223345678888883222  344555678899999999


Q ss_pred             EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371          159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME  220 (330)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~  220 (330)
                      +++.|+++.+.+..+        ..+++|++|++++|.+..++  +++.+++|++|++++|.+.
T Consensus       183 ~l~~N~l~~i~~~~f--------~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         183 LLHQNRVAHVHPHAF--------RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECCSSCCCEECTTTT--------TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccChhHh--------hhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            999888887755544        67899999999999776654  5889999999999998775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.54  E-value=4e-14  Score=124.46  Aligned_cols=83  Identities=25%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      +++++|+.   .++|++|++++|+++++|..   +.+|+.|++.+|.+ ..++.  +  .+.|++|++++|.+ .     
T Consensus        49 ~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l-~~l~~--l--p~~L~~L~L~~n~l-~-----  111 (353)
T d1jl5a_          49 GLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-KALSD--L--PPLLEYLGVSNNQL-E-----  111 (353)
T ss_dssp             CCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCCS--C--CTTCCEEECCSSCC-S-----
T ss_pred             CCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhccc-chhhh--h--cccccccccccccc-c-----
Confidence            34555532   24556666666666655543   23455555555543 22221  1  12366666666555 1     


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                                .++ .++.+++|++|++.++.
T Consensus       112 ----------~lp-~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         112 ----------KLP-ELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             ----------SCC-CCTTCTTCCEEECCSSC
T ss_pred             ----------ccc-chhhhccceeecccccc
Confidence                      111 24556666666666544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-15  Score=131.48  Aligned_cols=185  Identities=21%  Similarity=0.172  Sum_probs=131.1

Q ss_pred             hhccccccEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371           10 ISNLVSLHHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC   87 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   87 (330)
                      ......|++|++++|.+.  .++..+..+++|++|++++|.+....+.. ++++++|++|++++|...+           
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~it-----------  109 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS-----------  109 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC-----------
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCcccccccccc-----------
Confidence            345678999999999877  45556788999999999999775555554 8899999999999975411           


Q ss_pred             CCchhhHHHhccCcCcceeeEEEechhhHHHhh-ccccccCceEEEEE-EeCCCCCCCccccc-cccccCccEEEEE-cc
Q 037371           88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFL-KYPKLVSITQSVWV-ECGTYTRPPFNVLH-LAYMENLQELELG-SS  163 (330)
Q Consensus        88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l-~~~~~~~~~~~~~~-l~~l~~L~~L~l~-~~  163 (330)
                        ...+......+++|++|+++++.......+. .....++.|+.|++ +|... ........ ..++++|++|+++ |.
T Consensus       110 --d~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-i~~~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         110 --EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-LQKSDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             --HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-SCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             --ccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc-ccccccccccccccccccccccccc
Confidence              1223344567899999999986432112111 11234567999999 66331 22233333 4578999999998 67


Q ss_pred             CcceeeeCcccccCccCCCCCCCccEEEEecc-cccc--cCcccccCCccEEEEecc
Q 037371          164 KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKD--LTWLVFVQNLKQLNMQGF  217 (330)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--l~~l~~l~~L~~L~L~~~  217 (330)
                      .+++.....        ...+++|++|++++| .+++  +..++++|+|+.|+++++
T Consensus       187 ~itd~~~~~--------l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         187 MLKNDCFQE--------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCGGGGGG--------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCchhhhh--------hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            776443332        356899999999999 6655  446788999999999885

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.6e-14  Score=117.51  Aligned_cols=232  Identities=16%  Similarity=0.133  Sum_probs=146.1

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      ..+.|. .++++.++.+++.+|+.+.  +++++|++++|.+ ..+|..+|.++++|++|++++|.+              
T Consensus         4 ~~C~C~-~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i-~~l~~~~f~~l~~L~~L~ls~n~~--------------   65 (242)
T d1xwdc1           4 RICHCS-NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDV--------------   65 (242)
T ss_dssp             SSEEEC-SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCC-CEECTTTTTTCTTCCEEEEESCTT--------------
T ss_pred             CcCCCc-CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcC-CccChhHhhccchhhhhhhccccc--------------
Confidence            345664 3788899888999998653  5799999999976 677776689999999999999887              


Q ss_pred             Cchh-hHHHhccCcCcceeeEEEe-chhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCc
Q 037371           89 DAEP-LMKELLGLKHLNVLSWSFR-SSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKL  165 (330)
Q Consensus        89 ~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  165 (330)
                       ... -...+..+++++++.+..+ ......  ......+.+|+.+++ +...  ........+..++.+..+...++.+
T Consensus        66 -~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~--~~~~~~l~~L~~l~l~~~~l--~~~~~~~~~~~l~~l~~~~~~n~~l  140 (242)
T d1xwdc1          66 -LEVIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINI  140 (242)
T ss_dssp             -CCEECSSSEESCTTCCEEEEECCTTCCEEC--TTSEECCTTCCEEEEESCCC--CSCCCCTTTCBSSCEEEEEESCTTC
T ss_pred             -cceeeccccccccccccccccccccccccc--cccccccccccccccchhhh--ccccccccccccccccccccccccc
Confidence             222 2345678888888887653 222111  122244566888888 3322  1111122233444444444445555


Q ss_pred             ceeeeCcccccCccCCCCCCCccEEEEecccccccCc-ccccCCccEEEEec-ccccccccccccccccccccCccccCc
Q 037371          166 EEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW-LVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSEHNIFA  243 (330)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
                      ..+....+       .+....++.|+++++.+..++. ....++++.+.... +.+++++.            ..+..++
T Consensus       141 ~~i~~~~~-------~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~------------~~f~~l~  201 (242)
T d1xwdc1         141 HTIERNSF-------VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN------------DVFHGAS  201 (242)
T ss_dssp             CEECTTSS-------TTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCT------------TTTTTSC
T ss_pred             cccccccc-------ccccccceeeecccccccccccccccchhhhccccccccccccccH------------HHhcCCC
Confidence            55543332       1122467778888776665442 33455666665444 77777754            2567788


Q ss_pred             ccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCC
Q 037371          244 RLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPL  285 (330)
Q Consensus       244 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~  285 (330)
                      +|+.|+++++ .++.++.  ..|.+|..|...++.+++.+|.
T Consensus       202 ~L~~L~Ls~N-~l~~l~~--~~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         202 GPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             CCSEEECTTS-CCCCCCS--SSCTTCCEEESSSEESSSCSCC
T ss_pred             CCCEEECCCC-cCCccCH--HHHcCCcccccCcCCCCCcCCC
Confidence            8888888887 4666543  3467777777667777777774

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.6e-13  Score=110.73  Aligned_cols=131  Identities=15%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371           16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK   95 (330)
Q Consensus        16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (330)
                      ..+++.++++++.+|..+.  +++++|++++|.+...++...+.++++|++|++++|.+               ......
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i---------------~~~~~~   72 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL---------------TGIEPN   72 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC---------------CCBCTT
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccc---------------cccccc
Confidence            4678888888998988663  67899999999886556555578899999999999888               334556


Q ss_pred             HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371           96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE  175 (330)
Q Consensus        96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  175 (330)
                      .+..+++|+.|++++|.+.                            ......|.++++|+.|+++.|.++.+..+.+  
T Consensus        73 ~~~~~~~L~~L~Ls~N~l~----------------------------~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--  122 (192)
T d1w8aa_          73 AFEGASHIQELQLGENKIK----------------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSF--  122 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCC----------------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSS--
T ss_pred             ccccccccceeeecccccc----------------------------ccCHHHHhCCCcccccccCCccccccCHHHh--
Confidence            6777888888888776522                            2223457788889999999888887765554  


Q ss_pred             cCccCCCCCCCccEEEEecccccc
Q 037371          176 VKKLFRNGFRSLNTVVLRSCRGKD  199 (330)
Q Consensus       176 ~~~~~~~~~~~L~~L~L~~~~~~~  199 (330)
                            ..+++|++|+|++|.+..
T Consensus       123 ------~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         123 ------EHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ------TTCTTCCEEECTTCCBCC
T ss_pred             ------cCCccccccccccccccc
Confidence                  567888899988885543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=5e-13  Score=99.72  Aligned_cols=97  Identities=23%  Similarity=0.298  Sum_probs=78.7

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |+++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++|.+ ..+|.  +.++++|++|++++|.+ +.   
T Consensus         8 n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~~--~~~l~~L~~L~l~~N~i-~~---   79 (124)
T d1dcea3           8 KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQELLLCNNRL-QQ---   79 (124)
T ss_dssp             SCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCGG--GTTCSSCCEEECCSSCC-CS---
T ss_pred             CCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccCc--cccccccCeEECCCCcc-CC---
Confidence            5677787 58899999999999999999988889999999999999977 56665  88999999999999888 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                                ......+..+++|+.|++++|.+..
T Consensus        80 ----------~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          80 ----------SAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ----------SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ----------CCCchhhcCCCCCCEEECCCCcCCc
Confidence                      1223567888899999998887653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.30  E-value=5.4e-12  Score=110.55  Aligned_cols=247  Identities=17%  Similarity=0.113  Sum_probs=139.0

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |.++++|+.+   .+|+.|++++|+++.++.-   .+.|++|++++|.+ ..+|.  ++.+++|++|+++++.+...   
T Consensus        68 N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l-~~lp~--~~~l~~L~~L~l~~~~~~~~---  135 (353)
T d1jl5a_          68 NSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-EKLPE--LQNSSFLKIIDVDNNSLKKL---  135 (353)
T ss_dssp             SCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-SSCCC--CTTCTTCCEEECCSSCCSCC---
T ss_pred             CCCcccccch---hhhhhhhhhhcccchhhhh---cccccccccccccc-ccccc--hhhhccceeecccccccccc---
Confidence            5788999765   4788889999988866531   14699999999976 67786  78899999999999877211   


Q ss_pred             ccCccccC-------CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccccc
Q 037371           81 EEGSVLCD-------DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYME  153 (330)
Q Consensus        81 ~~~~~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~  153 (330)
                       +......       ........+..++.++.+.+..+.......      .....+.+.....    .......+..++
T Consensus       136 -~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~------~~~~~~~l~~~~~----~~~~~~~~~~l~  204 (353)
T d1jl5a_         136 -PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNN----ILEELPELQNLP  204 (353)
T ss_dssp             -CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSS----CCSSCCCCTTCT
T ss_pred             -ccccccccchhhccccccccccccccccceeccccccccccccc------ccccccccccccc----cccccccccccc
Confidence             0000000       000111223344555555555443221110      1111112222110    111223355677


Q ss_pred             CccEEEEEccCcceeeeCcccc--------cCccCCCCCCCccEEEEecc---cccccC--------------c-ccccC
Q 037371          154 NLQELELGSSKLEEMKIDSTEE--------VKKLFRNGFRSLNTVVLRSC---RGKDLT--------------W-LVFVQ  207 (330)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~L~L~~~---~~~~l~--------------~-l~~l~  207 (330)
                      .|+.+.++.+............        ..........++....+..+   ++..++              . ...++
T Consensus       205 ~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  284 (353)
T d1jl5a_         205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP  284 (353)
T ss_dssp             TCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCC
Confidence            7777777754443321110000        00000112233444444333   111111              1 12368


Q ss_pred             CccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371          208 NLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNS  287 (330)
Q Consensus       208 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~  287 (330)
                      +|++|+|++|.+..++.                .+++|++|+++++ .+++++.   .+++|++|++++|+ ++.+|...
T Consensus       285 ~L~~L~Ls~N~l~~lp~----------------~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~  343 (353)
T d1jl5a_         285 SLEELNVSNNKLIELPA----------------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIP  343 (353)
T ss_dssp             TCCEEECCSSCCSCCCC----------------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCC
T ss_pred             CCCEEECCCCccCcccc----------------ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCccc
Confidence            99999999998887733                3689999999988 6777653   35789999999985 99998765


Q ss_pred             cCCC
Q 037371          288 SSAK  291 (330)
Q Consensus       288 ~~~~  291 (330)
                      .+++
T Consensus       344 ~~L~  347 (353)
T d1jl5a_         344 ESVE  347 (353)
T ss_dssp             TTCC
T ss_pred             cccC
Confidence            5443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-13  Score=105.31  Aligned_cols=90  Identities=14%  Similarity=0.090  Sum_probs=73.2

Q ss_pred             hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371            9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD   88 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   88 (330)
                      ++.++..+++|+|++|+|+.+|..+..+++|++|++++|.+ ..++.  ++.+++|++|++++|.+              
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i-~~l~~--~~~l~~L~~L~ls~N~i--------------   75 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDG--FPLLRRLKTLLVNNNRI--------------   75 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEECC--CCCCSSCCEEECCSSCC--------------
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCC-CccCC--cccCcchhhhhcccccc--------------
Confidence            46678899999999999999987778899999999999977 56654  88999999999999998              


Q ss_pred             CchhhHHHhccCcCcceeeEEEechhhH
Q 037371           89 DAEPLMKELLGLKHLNVLSWSFRSSLAV  116 (330)
Q Consensus        89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~  116 (330)
                       .......+..+++|++|++++|.+..+
T Consensus        76 -~~l~~~~~~~l~~L~~L~L~~N~i~~~  102 (162)
T d1a9na_          76 -CRIGEGLDQALPDLTELILTNNSLVEL  102 (162)
T ss_dssp             -CEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred             -cCCCccccccccccccceecccccccc
Confidence             222233456788999999998875543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=3.6e-12  Score=94.95  Aligned_cols=103  Identities=23%  Similarity=0.275  Sum_probs=78.6

Q ss_pred             cEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHH
Q 037371           17 HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKE   96 (330)
Q Consensus        17 ~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (330)
                      |+|++++|+++.+|. +..+++|++|++++|.+ ..+|.. ++.+++|++|++++|.+ +.                .+.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~-~~~l~~L~~L~l~~N~i-~~----------------l~~   60 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPA-LAALRCLEVLQASDNAL-EN----------------VDG   60 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGG-GGGCTTCCEEECCSSCC-CC----------------CGG
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-Ccchhh-hhhhhcccccccccccc-cc----------------cCc
Confidence            689999999998874 89999999999999977 678876 88999999999999988 21                235


Q ss_pred             hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcc
Q 037371           97 LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLE  166 (330)
Q Consensus        97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  166 (330)
                      +.++++|++|++++|.+..+                           .....+..+++|+.|++++|.++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~---------------------------~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQS---------------------------AAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSS---------------------------STTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccccccCeEECCCCccCCC---------------------------CCchhhcCCCCCCEEECCCCcCC
Confidence            77888888888887653321                           11234566667777777666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=7e-12  Score=100.85  Aligned_cols=120  Identities=22%  Similarity=0.261  Sum_probs=93.9

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcc-cCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITG-LPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL   78 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~-lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~   78 (330)
                      ++++++|..+.  .++++|+|++|.|+. ++. .+..+++|+.|++++|.+... +...+..+++|++|++++|++    
T Consensus        18 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l----   90 (192)
T d1w8aa_          18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI----   90 (192)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC----
T ss_pred             CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc----
Confidence            46889998875  689999999999974 433 678999999999999988544 444599999999999999998    


Q ss_pred             ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371           79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL  158 (330)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  158 (330)
                                 ....+..+.++++|++|++++|.+..                            .....|..+++|++|
T Consensus        91 -----------~~l~~~~F~~l~~L~~L~L~~N~l~~----------------------------i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          91 -----------KEISNKMFLGLHQLKTLNLYDNQISC----------------------------VMPGSFEHLNSLTSL  131 (192)
T ss_dssp             -----------CEECSSSSTTCTTCCEEECCSSCCCE----------------------------ECTTSSTTCTTCCEE
T ss_pred             -----------cccCHHHHhCCCcccccccCCccccc----------------------------cCHHHhcCCcccccc
Confidence                       33344568889999999998876332                            223456778889999


Q ss_pred             EEEccCcc
Q 037371          159 ELGSSKLE  166 (330)
Q Consensus       159 ~l~~~~~~  166 (330)
                      ++++|.+.
T Consensus       132 ~L~~N~~~  139 (192)
T d1w8aa_         132 NLASNPFN  139 (192)
T ss_dssp             ECTTCCBC
T ss_pred             cccccccc
Confidence            88876654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=2.3e-13  Score=110.25  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             ccEeecCCC--CCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371           16 LHHLDLSRT--NITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        16 L~~L~L~~~--~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      ++.+++.+.  .+..+|.++..+++|++|++++|.+ ..++.  ++.+++|++|++++|.+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~~--l~~l~~L~~L~Ls~N~i   82 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKISS--LSGMENLRILSLGRNLI   82 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE-SCCCC--HHHHTTCCEEECCEEEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCC-CCccc--ccCCccccChhhccccc
Confidence            444555543  3445666777777777777777765 44543  66777777777777666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5e-12  Score=98.77  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=82.5

Q ss_pred             CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      |+++++|..+..+++|++|++++|.+..++ .+..+++|++|++++|.+ ..++..++..+++|++|++++|.+ ..   
T Consensus        28 n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~L~L~~N~i-~~---  101 (162)
T d1a9na_          28 YKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSL-VE---  101 (162)
T ss_dssp             SCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CC---
T ss_pred             CCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccc-cCCCccccccccccccceeccccc-cc---
Confidence            578889877788999999999999999885 588999999999999987 666665577899999999999998 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA  115 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  115 (330)
                               . .....+..+++|++|++.+|.+..
T Consensus       102 ---------~-~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_         102 ---------L-GDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             ---------G-GGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ---------c-ccccccccccccchhhcCCCcccc
Confidence                     1 223567889999999999987654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.06  E-value=1.6e-11  Score=107.90  Aligned_cols=251  Identities=14%  Similarity=0.048  Sum_probs=155.0

Q ss_pred             ccCChhhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCC---Cch------hhhCCCCCCcEEEe
Q 037371            4 SKLPSGISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSI---IPP------QLISGFSKLEVLRL   69 (330)
Q Consensus         4 ~~lp~~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~---~p~------~~~~~l~~L~~L~l   69 (330)
                      ..+...+.....|++|+|++|.+.     .+-..+...++|+.++++++.....   .+.      .++..+++|++|++
T Consensus        21 ~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            356667888899999999999876     3444567889999999988744221   111      12667899999999


Q ss_pred             ccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhH--HHhhc---------cccccCceEEEEEEeCC
Q 037371           70 LSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAV--QKFLK---------YPKLVSITQSVWVECGT  138 (330)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~---------~~~~~~~L~~L~l~~~~  138 (330)
                      ++|.+ +.    .+      ...+...+...++|++|++++|.+...  ..+..         .......++.+.++...
T Consensus       101 ~~n~i-~~----~~------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1         101 SDNAF-GP----TA------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             CSCCC-CT----TT------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             ccccc-cc----cc------ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            99987 21    01      334566777899999999998865321  11111         01123456666662222


Q ss_pred             CCCCCcc----ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc-----c-CcccccCC
Q 037371          139 YTRPPFN----VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD-----L-TWLVFVQN  208 (330)
Q Consensus       139 ~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l-~~l~~l~~  208 (330)
                        .....    ...+...+.|+.|+++.+.+++......   .......+++|+.|++++|.+.+     + ..+..+++
T Consensus       170 --i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~---l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         170 --LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL---LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             --CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH---HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             --ccccccccccchhhhhhhhcccccccccccccccccc---hhhhhcchhhhccccccccccccccccccccccccccc
Confidence              22221    1235567889999998666653211100   01113467889999999985543     2 24677899


Q ss_pred             ccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc-----cCCC-CCCCCccEEEEccC
Q 037371          209 LKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV-----YPNP-LPFPKLKKIQVFHC  277 (330)
Q Consensus       209 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~-~~~~~L~~L~i~~c  277 (330)
                      |++|+|++|.+.+.+.......+      .....++|+.|+++++ .+..-     .... ...++|+.|++.++
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l------~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAF------SKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHH------HTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             chhhhhhcCccCchhhHHHHHHh------hhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            99999999887765332111000      1123578999999987 34431     1111 13678888888774

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.86  E-value=3.9e-10  Score=98.76  Aligned_cols=221  Identities=16%  Similarity=0.145  Sum_probs=140.2

Q ss_pred             hhhhccccccEeecCCCCCcc-----------cChhhhcCcccceeccCCCCCCCCCch---hhhCCCCCCcEEEeccCC
Q 037371            8 SGISNLVSLHHLDLSRTNITG-----------LPQELKALEKLRYLNLDHTRFLSIIPP---QLISGFSKLEVLRLLSRG   73 (330)
Q Consensus         8 ~~l~~l~~L~~L~L~~~~~~~-----------lp~~l~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~   73 (330)
                      ..+...+.|+.++++++....           +...+..+++|+.|++++|.+...-..   .++...++|++|++++|.
T Consensus        53 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          53 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            346778999999999875432           223356788999999999977443221   125578999999999988


Q ss_pred             CCCccccccCccccCCchhhHHH---------hccCcCcceeeEEEechh--hHHHhhccccccCceEEEEE-EeCCCCC
Q 037371           74 RWSVLEEEEGSVLCDDAEPLMKE---------LLGLKHLNVLSWSFRSSL--AVQKFLKYPKLVSITQSVWV-ECGTYTR  141 (330)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l-~~~~~~~  141 (330)
                      + ..    .+      ...+...         ....+.|+.+.++++...  ....+.........+++|++ .+.-   
T Consensus       133 l-~~----~~------~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i---  198 (344)
T d2ca6a1         133 L-GP----QA------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI---  198 (344)
T ss_dssp             C-HH----HH------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC---
T ss_pred             c-cc----cc------cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccc---
Confidence            7 11    00      0111111         235678888988887653  23444444455677999998 4432   


Q ss_pred             CCc-----cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--C----cccc--cCC
Q 037371          142 PPF-----NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--T----WLVF--VQN  208 (330)
Q Consensus       142 ~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~----~l~~--l~~  208 (330)
                      ...     ....+..+++|+.|++++|.++.......    ......+++|++|+|++|.+.+-  .    .+..  .+.
T Consensus       199 ~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L----~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~  274 (344)
T d2ca6a1         199 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  274 (344)
T ss_dssp             CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             cccccccchhhhhcchhhhcccccccccccccccccc----cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCC
Confidence            221     22347788999999999777764322111    11124578899999999966542  1    2332  467


Q ss_pred             ccEEEEecccccccccccccccccccccCcc-ccCcccceeeccccc
Q 037371          209 LKQLNMQGFTMEEIISVDKLSDISEIIGSEH-NIFARLEYLTMWRGT  254 (330)
Q Consensus       209 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  254 (330)
                      |++|++++|.+..-......        ..+ ...++|++|+++++.
T Consensus       275 L~~L~ls~N~i~~~~~~~l~--------~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         275 LQTLRLQYNEIELDAVRTLK--------TVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CCEEECCSSCCBHHHHHHHH--------HHHHHHCTTCCEEECTTSB
T ss_pred             CCEEECCCCcCChHHHHHHH--------HHHHccCCCCCEEECCCCc
Confidence            99999999887654221000        022 357899999998863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.82  E-value=9e-11  Score=94.64  Aligned_cols=136  Identities=21%  Similarity=0.196  Sum_probs=101.2

Q ss_pred             CccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371            3 LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE   82 (330)
Q Consensus         3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~   82 (330)
                      +.++|.+++.+++|++|+|++|+|+.++ .+..+++|++|++++|.+ ..+|.. ...+++|++|++++|.+        
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~-~~~~~~L~~L~l~~N~i--------  105 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENL-DAVADTLEELWISYNQI--------  105 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEE-CSCSSH-HHHHHHCCEEECSEEEC--------
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccc-cccccc-ccccccccccccccccc--------
Confidence            5667788999999999999999999986 589999999999999976 666652 55577899999999988        


Q ss_pred             CccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCC--CCCCCcc-----ccccccccC
Q 037371           83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGT--YTRPPFN-----VLHLAYMEN  154 (330)
Q Consensus        83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~--~~~~~~~-----~~~l~~l~~  154 (330)
                             .  ....+..+++|+.|++++|.+..+..+.. ...+++|+.|++ +..-  .......     ...+..+|+
T Consensus       106 -------~--~l~~~~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~  175 (198)
T d1m9la_         106 -------A--SLSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN  175 (198)
T ss_dssp             -------C--CHHHHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSS
T ss_pred             -------c--ccccccccccccccccccchhcccccccc-ccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCC
Confidence                   2  23568889999999999998876654332 234667999998 3211  0000000     112667899


Q ss_pred             ccEEE
Q 037371          155 LQELE  159 (330)
Q Consensus       155 L~~L~  159 (330)
                      |+.||
T Consensus       176 L~~LD  180 (198)
T d1m9la_         176 LKKLD  180 (198)
T ss_dssp             CCEES
T ss_pred             cCEeC
Confidence            99986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.7e-09  Score=83.47  Aligned_cols=95  Identities=17%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             CCccCChhhhccccccEeecCCC-CCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            2 SLSKLPSGISNLVSLHHLDLSRT-NITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~L~~~-~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      ++.++|..+..+++|++|+++++ .++.++. .|..+++|+.|++++|++ ..+++.+|..+++|++|++++|++ +.  
T Consensus        19 ~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~~L~Ls~N~l-~~--   94 (156)
T d2ifga3          19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFNAL-ES--   94 (156)
T ss_dssp             CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCSSCC-SC--
T ss_pred             CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc-CCcccccccccccccceeccCCCC-cc--
Confidence            45566777777777888887655 4666664 467777888888877766 555554577788888888887777 11  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                                   ++...-...+|+.|++++|..
T Consensus        95 -------------l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          95 -------------LSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             -------------CCSTTTCSCCCCEEECCSSCC
T ss_pred             -------------cChhhhccccccccccCCCcc
Confidence                         222222333577777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.3e-09  Score=79.47  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371           10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD   89 (330)
Q Consensus        10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   89 (330)
                      .+.+.....++.+++++.+.|..+..+++|++|++.++..++.++..+|.++++|+.|++++|++               
T Consensus         4 ~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l---------------   68 (156)
T d2ifga3           4 ACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL---------------   68 (156)
T ss_dssp             SSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC---------------
T ss_pred             CCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc---------------
Confidence            34556677888888888888888889999999999877555777766688999999999999887               


Q ss_pred             chhhHHHhccCcCcceeeEEEec
Q 037371           90 AEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        90 ~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                      ....+..+..+++|++|++++|.
T Consensus        69 ~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          69 RFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CEECTTGGGSCSCCCEEECCSSC
T ss_pred             CCcccccccccccccceeccCCC
Confidence            22233445555666666555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.9e-10  Score=101.78  Aligned_cols=120  Identities=16%  Similarity=0.084  Sum_probs=68.6

Q ss_pred             ccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--Cc----ccccCCccEEEEecccccccc
Q 037371          150 AYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TW----LVFVQNLKQLNMQGFTMEEII  223 (330)
Q Consensus       150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~----l~~l~~L~~L~L~~~~l~~~~  223 (330)
                      ...+.++.++++++.+++.......   .........|+.+.+++|.+...  ..    +...++|++|+|++|.+.+.+
T Consensus       280 ~~~~~l~~l~l~~n~i~~~~~~~l~---~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g  356 (460)
T d1z7xw1         280 RAKESLKELSLAGNELGDEGARLLC---ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  356 (460)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHH---HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccchhh---ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc
Confidence            3455566666655544422111110   00012345799999999854432  22    345679999999998876543


Q ss_pred             cccccccccccccCccccCcccceeecccccccccccC-----CCCCCCCccEEEEccCCCCC
Q 037371          224 SVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYP-----NPLPFPKLKKIQVFHCRQLK  281 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----~~~~~~~L~~L~i~~c~~L~  281 (330)
                      ......       ......+.|++|++++| .+.+...     .....++|++|+++++ .++
T Consensus       357 ~~~l~~-------~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~  410 (460)
T d1z7xw1         357 VRELCQ-------GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLG  410 (460)
T ss_dssp             HHHHHH-------HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             cchhhh-------hhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-cCC
Confidence            210000       01124567999999999 5654221     1223689999999985 554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.2e-09  Score=93.67  Aligned_cols=95  Identities=20%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             hhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCC----CchhhhCCCCCCcEEEeccCCCCCccc
Q 037371            9 GISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSI----IPPQLISGFSKLEVLRLLSRGRWSVLE   79 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~~   79 (330)
                      -+..++++++|+|++|+++     .+...+..+++|++|++++|.+...    +...+.....+|++|++++|.+ +.  
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-t~--   98 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TG--   98 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC-BG--
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc-cc--
Confidence            3567788899999999877     4455677889999999998865311    1111112345799999999887 22  


Q ss_pred             cccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371           80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL  114 (330)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  114 (330)
                        .+      ...+...+..+++|++|++++|.+.
T Consensus        99 --~~------~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          99 --AG------CGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             --GG------HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             --cc------cccccchhhccccccccccccccch
Confidence              00      1234566788889999998887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.4e-06  Score=66.94  Aligned_cols=63  Identities=24%  Similarity=0.159  Sum_probs=30.9

Q ss_pred             hccccccEeecCCCCCcccC---hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371           11 SNLVSLHHLDLSRTNITGLP---QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        11 ~~l~~L~~L~L~~~~~~~lp---~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~   74 (330)
                      ..+++|++|+|++|+++.++   ..+..+++|+.|++++|.+ ..+++-...+..+|+.|++++|.+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i-~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC-CCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc-ccchhhhhhhccccceeecCCCCc
Confidence            34555566666665555332   2344555566666665544 333321122333455555555555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-06  Score=66.31  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=24.4

Q ss_pred             hcCcccceeccCCCCCCCCCc--hhhhCCCCCCcEEEeccCCC
Q 037371           34 KALEKLRYLNLDHTRFLSIIP--PQLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        34 ~~l~~L~~L~l~~~~~~~~~p--~~~~~~l~~L~~L~l~~~~~   74 (330)
                      ..+++|++|++++|++. .++  ...+..+++|+.|++++|.+
T Consensus        62 ~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          62 ENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             HHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCC
T ss_pred             HhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCcc
Confidence            35667777777777653 222  12245667777777777766

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.29  E-value=6e-05  Score=57.79  Aligned_cols=91  Identities=14%  Similarity=0.114  Sum_probs=60.1

Q ss_pred             hccccccEeecCCC-CCc-----ccChhhhcCcccceeccCCCCCCCCC---chhhhCCCCCCcEEEeccCCCCCccccc
Q 037371           11 SNLVSLHHLDLSRT-NIT-----GLPQELKALEKLRYLNLDHTRFLSII---PPQLISGFSKLEVLRLLSRGRWSVLEEE   81 (330)
Q Consensus        11 ~~l~~L~~L~L~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~~---p~~~~~~l~~L~~L~l~~~~~~~~~~~~   81 (330)
                      .+.++|++|+|+++ .+.     .+-..+...+.|++|++++|.+....   -..++...+.|++|++++|.+ +.    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i-~~----   86 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL-TP----   86 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC-CH----
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc-ch----
Confidence            34578999999875 455     23335667788999999888663211   112355678899999988887 22    


Q ss_pred             cCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371           82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRS  112 (330)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  112 (330)
                      .|      ...+...+...+.|++|++++|.
T Consensus        87 ~g------~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          87 EL------LARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HH------HHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HH------HHHHHHHHHhCCcCCEEECCCCc
Confidence            11      22345667777888888887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.55  E-value=0.0012  Score=50.09  Aligned_cols=97  Identities=18%  Similarity=0.153  Sum_probs=67.9

Q ss_pred             hhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCCCc---hhhhCCCCCCcEEEeccCCCCCcccc
Q 037371            9 GISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSIIP---PQLISGFSKLEVLRLLSRGRWSVLEE   80 (330)
Q Consensus         9 ~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~   80 (330)
                      .+...++|++|++++|.+.     .+...+...+.|++|++++|.+...--   ..++...+.|++|++++|.+ +.   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~-~~---  114 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ-SV---  114 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS-CC---
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC-CC---
Confidence            4667789999999999887     333456778899999999997643211   12377888999999998865 21   


Q ss_pred             ccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371           81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS  113 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  113 (330)
                      +..    .....+...+...+.|+.|.+..+..
T Consensus       115 ~g~----~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         115 LGN----QVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CCH----HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccH----HHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            100    00123567777889999998876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.30  E-value=0.00084  Score=50.92  Aligned_cols=64  Identities=19%  Similarity=0.165  Sum_probs=33.2

Q ss_pred             hccccccEeecCCC-CCc-----ccChhhhcCcccceeccCCCCCCCCCch---hhhCCCCCCcEEEeccCCC
Q 037371           11 SNLVSLHHLDLSRT-NIT-----GLPQELKALEKLRYLNLDHTRFLSIIPP---QLISGFSKLEVLRLLSRGR   74 (330)
Q Consensus        11 ~~l~~L~~L~L~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~   74 (330)
                      .+.+.|++|+++++ .++     .+-..+...++|++|++++|.+....-.   .++...+.++.+++.+|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34566777777653 344     2223344566666666666644221111   1234455666666666555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.05  E-value=0.0023  Score=48.40  Aligned_cols=91  Identities=9%  Similarity=-0.023  Sum_probs=54.9

Q ss_pred             hhcCcccceeccCCCC-CCCCCc---hhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeE
Q 037371           33 LKALEKLRYLNLDHTR-FLSIIP---PQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSW  108 (330)
Q Consensus        33 l~~l~~L~~L~l~~~~-~~~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  108 (330)
                      ..+.+.|++|+++++. +....-   ..++...++|++|++++|.+ +.    .+      ...+...+...+.++.+++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l-~~----~~------~~~L~~~l~~~~~l~~l~l   81 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-ND----PV------AFALAEMLKVNNTLKSLNV   81 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CH----HH------HHHHHHHHHHCSSCCEEEC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcc-cH----HH------HHHHHHHHhhcccchhhhh
Confidence            3567889999998743 321111   12256788899999999887 21    01      2234456677788888888


Q ss_pred             EEechh--hHHHhhccccccCceEEEEE
Q 037371          109 SFRSSL--AVQKFLKYPKLVSITQSVWV  134 (330)
Q Consensus       109 ~~~~~~--~~~~~~~~~~~~~~L~~L~l  134 (330)
                      .++...  +...+.......+.++.+.+
T Consensus        82 ~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          82 ESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             CSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             ccccccchhHHHHHHHHHhCccccEEee
Confidence            776542  23444444444555665555