Citrus Sinensis ID: 037376
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 612 | ||||||
| 224114784 | 631 | predicted protein [Populus trichocarpa] | 0.967 | 0.938 | 0.705 | 0.0 | |
| 255567074 | 624 | Peptide-N4-(N-acetyl-beta-glucosaminyl)a | 0.936 | 0.918 | 0.694 | 0.0 | |
| 56405352 | 571 | RecName: Full=Peptide-N4-(N-acetyl-beta- | 0.895 | 0.959 | 0.712 | 0.0 | |
| 225461673 | 612 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.921 | 0.921 | 0.689 | 0.0 | |
| 449456711 | 624 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.929 | 0.911 | 0.678 | 0.0 | |
| 449516754 | 622 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.929 | 0.914 | 0.677 | 0.0 | |
| 356514559 | 604 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.941 | 0.953 | 0.628 | 0.0 | |
| 15232438 | 609 | Peptide-N4-(N-acetyl-beta-glucosaminyl)a | 0.949 | 0.954 | 0.627 | 0.0 | |
| 356545237 | 599 | PREDICTED: peptide-N4-(N-acetyl-beta-glu | 0.957 | 0.978 | 0.609 | 0.0 | |
| 147857525 | 581 | hypothetical protein VITISV_039311 [Viti | 0.870 | 0.917 | 0.654 | 0.0 |
| >gi|224114784|ref|XP_002316856.1| predicted protein [Populus trichocarpa] gi|222859921|gb|EEE97468.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/602 (70%), Positives = 474/602 (78%), Gaps = 10/602 (1%)
Query: 4 FHFPLFLCISLFLLHQTQPINANLHKTKTLFRNSNLYS-----SELPTLHLNTTQIPPTR 58
FH P +FLLH AN+HKT L + S+L++ ++ H PPT
Sbjct: 6 FHLPFLF---VFLLHPLSST-ANIHKTNNLLK-SHLFTEPTSITKTHPAHKPLNDTPPTV 60
Query: 59 YFEVTKPIEIPKTNPCSHHILHHDFAFTYGKPPVLANYTPPSHCSSKKVSKIVLEWNATC 118
+FEVTKPI++P T PC H IL HDFA TYGKPPVL NYTPPSHC S+ SKIVLEW ATC
Sbjct: 61 FFEVTKPIDVPNTKPCKHFILQHDFASTYGKPPVLVNYTPPSHCPSQDFSKIVLEWKATC 120
Query: 119 KGRQFDRIFGVWLGGVELLRSCTAEPRATGIVWSVKKDLTRYHSLLVKNETQTFAVYLGN 178
KGRQFDRIFGVWLGGVELLRSCTAEPRATGIVW+V+KD+TRY+SLLVKNETQ FAVY+GN
Sbjct: 121 KGRQFDRIFGVWLGGVELLRSCTAEPRATGIVWTVRKDITRYYSLLVKNETQEFAVYMGN 180
Query: 179 LVDSTYTGVYHVDITLYFYPADVDINDHEYDSDVLASGYGSKADLIWPISRNLPLNDGLW 238
+VDSTYTG+YHV++++YFYPA+ ++ ++ + LASG SKADLI PISRN PLNDG W
Sbjct: 181 IVDSTYTGIYHVNVSIYFYPAEKKLSHSDHGFNNLASGRDSKADLILPISRNFPLNDGFW 240
Query: 239 FEIENSTDIGVKEFVIPQNVYRAVLEVYVSFHENDEFWYSNVPNDYIAANNLTDTPGNGP 298
FEI+NSTD KEF IPQNVYRAVLEVYVSFHENDEFWY N PN+YI ANNLT PGNGP
Sbjct: 241 FEIQNSTDSEAKEFKIPQNVYRAVLEVYVSFHENDEFWYGNYPNEYIIANNLTGFPGNGP 300
Query: 299 FREVVVSLDGEVVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPTYDIEITPFLGNLLDG 358
FREVVVSLDGE+VGAVWPFTVVFTGGINPLLWRPITAIGSFDLP+YDIEITPFLGN+LDG
Sbjct: 301 FREVVVSLDGEIVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGNILDG 360
Query: 359 KTHKFGFSVTNALNVWYIDANLHLWLDGRSAKTEGKLLKHSSVPLQVYLESNFKGLDGTF 418
KTHK GFSVTNALNVWYIDANLHLWLD RS TEGKLLKH S PL + L SNF GL+G F
Sbjct: 361 KTHKLGFSVTNALNVWYIDANLHLWLDHRSTITEGKLLKHESKPLALSLVSNFTGLNGKF 420
Query: 419 LTNVNRSISSLGWVESSHGKITTHFIQDFAYSNSMVMGNSGNLQIVNQTIHFDDTVSAEM 478
LT+ R ISS GWV+SSHG ITT F Q F Y N M MG G+LQIVNQTI F D VS
Sbjct: 421 LTSARRFISSNGWVKSSHGNITTRFNQHFGYRNLMEMGKDGDLQIVNQTIKFTDNVSFRK 480
Query: 479 QSSNAYFTKSFKVFPFYMYSNTEDKGNGTSLSLANVTLGFNEKNSESAGSGFSESSLKNL 538
SSN KS K F F MYS+ D+GNGTSLS+ANVTLGFNEKN + AG GF+ + L+NL
Sbjct: 481 PSSNVKAFKSLKNFEFDMYSDYMDQGNGTSLSVANVTLGFNEKNVKHAGLGFASNILRNL 540
Query: 539 QNGQGVMFVKNNLVISGLGSTQQVYHYHGDNFCYFRNISSSNYTILYDKVINKCEKGTEP 598
QNGQGVM VKNNLV SG+GSTQQ Y Y+G FCYFRNISSSNYTIL D V N C +
Sbjct: 541 QNGQGVMVVKNNLVQSGMGSTQQEYTYNGSGFCYFRNISSSNYTILDDNVGNTCSERNHS 600
Query: 599 HL 600
HL
Sbjct: 601 HL 602
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567074|ref|XP_002524519.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A, putative [Ricinus communis] gi|223536193|gb|EEF37846.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|56405352|sp|P81898.2|PNAA_PRUDU RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A; Short=PNGase A; AltName: Full=Glycopeptide N-glycosidase; AltName: Full=N-glycanase; Contains: RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain; AltName: Full=PNGase A small chain; AltName: Full=PNGase A subunit B; Contains: RecName: Full=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain; AltName: Full=PNGase A large chain; Short=PNGase A subunit A | Back alignment and taxonomy information |
|---|
| >gi|225461673|ref|XP_002285454.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449456711|ref|XP_004146092.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449516754|ref|XP_004165411.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356514559|ref|XP_003525973.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|15232438|ref|NP_188110.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana] gi|8777475|dbj|BAA97055.1| unnamed protein product [Arabidopsis thaliana] gi|332642067|gb|AEE75588.1| Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356545237|ref|XP_003541051.1| PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|147857525|emb|CAN82504.1| hypothetical protein VITISV_039311 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 612 | ||||||
| TAIR|locus:2086285 | 609 | AT3G14920 "AT3G14920" [Arabido | 0.941 | 0.945 | 0.624 | 6.1e-197 | |
| TAIR|locus:2169662 | 608 | AT5G05480 "AT5G05480" [Arabido | 0.879 | 0.884 | 0.385 | 3.5e-98 | |
| UNIPROTKB|G4NEC0 | 800 | MGG_00799 "Peptide-N4-(N-acety | 0.580 | 0.443 | 0.348 | 8.2e-53 | |
| ASPGD|ASPL0000031607 | 661 | AN10715 [Emericella nidulans ( | 0.447 | 0.414 | 0.303 | 4.3e-42 | |
| CGD|CAL0005876 | 983 | PNG2 [Candida albicans (taxid: | 0.243 | 0.151 | 0.320 | 2.4e-26 | |
| UNIPROTKB|Q59T41 | 983 | PNG2 "Putative uncharacterized | 0.243 | 0.151 | 0.320 | 2.4e-26 |
| TAIR|locus:2086285 AT3G14920 "AT3G14920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
Identities = 374/599 (62%), Positives = 447/599 (74%)
Query: 7 PLFLCISLFLLHQTQPINANLHKTKTLFRN---SNLYSSELPTLHLNTTQIPPTRYFEVT 63
PL ++F +H ++ +LH+T++ F+ S L+ S LP N T+ PTRYFEV
Sbjct: 7 PLIFFFTVFFVHSLSAVS-DLHETRSRFKPPQFSPLFFSSLPQ---NVTK-SPTRYFEVQ 61
Query: 64 KPI--EIPKTN-PCSHHILHHDFAFTYGKPPVLANYTPPSHCSSKKVSKIVLEWNATCKG 120
KP +P PCS+ ILHHDF +TY KPPVL+NYT PSHCSS++ SKIVLE+ +T +G
Sbjct: 62 KPPVPNLPTAQQPCSYQILHHDFGYTYAKPPVLSNYTLPSHCSSREFSKIVLEFKSTSQG 121
Query: 121 RQFDRIFGVWLGGVELLRSCTAEPRATGIVWSVKKDLTRYHSLLVKNETQTFAVYLGNLV 180
RQFDRIFGVWL GVE+LRSCTAEPR GIVWSV+KD+T+YHSLLVKNETQ +VYLGNL+
Sbjct: 122 RQFDRIFGVWLDGVEILRSCTAEPRPNGIVWSVEKDVTKYHSLLVKNETQILSVYLGNLI 181
Query: 181 DSTYTGVYHVDITLYFYPADVDINDHEYDSDVLASGYGS-KADLIWPISRNLPLNDGLWF 239
D TYTGVYHVD+ +FY ++ ++ D SGY S KAD+I PISRNLPLNDGLWF
Sbjct: 182 DKTYTGVYHVDVIFHFYQSESNLQD--------VSGYSSSKADMILPISRNLPLNDGLWF 233
Query: 240 EIENSTDIGVKEFVIPQNVYRAVLEVYVSFHENDEFWYSNVPNDYIAANNLTDTPGNGPF 299
EI NS D KEF IP+NVYRAVLEVYVSFHENDEFWY N+PNDY+ ANNL+ GNGPF
Sbjct: 234 EIVNSNDTKYKEFEIPRNVYRAVLEVYVSFHENDEFWYGNLPNDYVTANNLS-VAGNGPF 292
Query: 300 REVVVSLDGEVVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPTYDIEITPFLGNLLDGK 359
REVVVSLDG++ GAVWPF VVFTGGINPLLWRPITAIGSFDLP+YDIEITPFLG+LLDGK
Sbjct: 293 REVVVSLDGDIAGAVWPFPVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGSLLDGK 352
Query: 360 THKFGFSVTNALNVWYIDANLHLWLDGRSAKTEGKLLKHSSVPLQVYLESNFKGLDGTFL 419
THK GFSVTNALNVWYIDANLHLWLD EGK+L S L++ S+FKGL+G F
Sbjct: 353 THKVGFSVTNALNVWYIDANLHLWLDQEKEIVEGKVLDFSRSSLEISSVSDFKGLNGNFT 412
Query: 420 TNVNRSISSLGWVESSHGKITTHFIQDFAYSNSMVMGNSGNLQIVNQTIHFDDTVSAEMQ 479
T RSI+S+G V+SSHG I T+ Q+F+Y N MV+G GNLQI++Q I DD + A+
Sbjct: 413 TKAKRSITSVGLVKSSHGDIITNANQEFSYENKMVLGKDGNLQIIDQLIQADDRIHAKRA 472
Query: 480 SSNAYFTKSFKVFPFYMYSNTEDKGNGTSLSLANVTLGFNEKNXXXXXXXXXX--XXLKN 537
S Y KS K FPFY+ S+T ++ N T L++ANV++ FNE+ L+N
Sbjct: 473 SREIYAAKSIKSFPFYLDSDTLEQQNNTYLAVANVSMAFNEERSESDKGLMRTFKSKLEN 532
Query: 538 LQNGQGVMFVKNNLVISGLGSTQQVYHYHGDNFCYFRNISSSNYTILYDKVINKCEKGT 596
Q GQGVM VKNNLV+SG GSTQQVY+Y G + CYFRNISS NYTILYDKV + C+K T
Sbjct: 533 KQEGQGVMVVKNNLVVSGYGSTQQVYNYVGSDQCYFRNISSYNYTILYDKVESVCKKKT 591
|
|
| TAIR|locus:2169662 AT5G05480 "AT5G05480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4NEC0 MGG_00799 "Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000031607 AN10715 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005876 PNG2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q59T41 PNG2 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.XI.3552.1 | hypothetical protein (539 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 612 | |||
| pfam12222 | 427 | pfam12222, PNGaseA, Peptide N-acetyl-beta-D-glucos | 2e-77 |
| >gnl|CDD|221468 pfam12222, PNGaseA, Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 2e-77
Identities = 144/453 (31%), Positives = 214/453 (47%), Gaps = 55/453 (12%)
Query: 60 FEVTKPIEIPKTNPCSHHILHHDFAFTYGKPPVLANYTPPSHCSSKKVSKIVLEWNATCK 119
FEV +P+ P C +++H F +YGKP V Y PP C S + + ++ T
Sbjct: 3 FEVYQPVVTP-GGVCEILLMNHVFNNSYGKPFVGNVYIPPG-CD---FSTVRINFSVTSN 57
Query: 120 GRQFDRIFGVWLGGVELLRSCTAEPRATGIVWSVKKDLTRYHSLLVKNETQTFAVYLGNL 179
GRQFDR+ ++LG +E+ R+ TAEP GI+W+ KD+T++ +L N QT LGNL
Sbjct: 58 GRQFDRLAYMYLGDIEVFRTSTAEPTNDGIIWTYIKDMTQFENLWKGN--QTLIFDLGNL 115
Query: 180 VDSTYTGVYHVDITLYFYPADVDINDHEYDSDVLASGYGSKADLIWPIS-RNLPLNDGLW 238
+D YTG +++ +T FYP + D+I PIS R N
Sbjct: 116 IDDKYTGSFNMTLTATFYPGNP----------------VRLPDMIIPISARRSAYNYSSA 159
Query: 239 FEIENSTDIGVKEFVIPQNVYRAVLEVYVSFHENDEFWYSNVPN-DYIAANNLTDTPGNG 297
F + S + + +P YRAVL + +EFW+SNVP+ D +N+ + G
Sbjct: 160 FVVP-SDNAITQYVSLPNGTYRAVLSISACGQGGEEFWWSNVPSSDTETFDNVGELYGYS 218
Query: 298 PFREVVVSLDGEVVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPTYDIEITPFLGNLLD 357
PFRE+ + +DG + G VWPF ++FTGGI+P WRP+ I +FDL +I+ITPFL L D
Sbjct: 219 PFREIQLYIDGLLAGVVWPFPIIFTGGIDPGFWRPVVGIDAFDLRQPEIDITPFLPLLTD 278
Query: 358 GKTHKFGFSVTNAL-----------NV---WYIDANLHLWLDGRSAKTEGKLLKHSSVPL 403
G TH F +VT L +V W I + LWL+ + T G+ +
Sbjct: 279 GNTHSFEVTVTGLLTALQGTGTLTGSVASYWVITGVIFLWLNDDGSTTTGQSPPIIAPKP 338
Query: 404 QVYLES-----NFKGLDGTFLTNV--NRSISSLGWVESSHGKITTHFIQDFAYSNSMVMG 456
+ + G +GT +V R+++ SS + Q YSN+ +G
Sbjct: 339 SIAITRFLDPIFVTGFNGTLYYSVGGERTLN----YSSS----ILAWEQGLEYSNTGQLG 390
Query: 457 NSGNLQIVNQTIHFDDTVSAEMQSSNAYFTKSF 489
G Q NQ + +F
Sbjct: 391 QQGASQTFNQITQGAYLDEQFKEIGLYNDELTF 423
|
This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 558 and 775 amino acids in length. There is a conserved TGG sequence motif. PNGase A is a protein which cleaves glycopeptides. Length = 427 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 612 | |||
| PF12222 | 427 | PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl aspa | 100.0 | |
| PF09113 | 141 | N-glycanase_C: Peptide-N-glycosidase F, C terminal | 95.37 | |
| PF09112 | 177 | N-glycanase_N: Peptide-N-glycosidase F, N terminal | 94.31 |
| >PF12222 PNGaseA: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; InterPro: IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A), unlike many other amidases, is capable of hydrolysing glycopeptides with an alpha-1,3-fucosylated asparagine-bound N-acetylglucosamine (GlcNAc) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-122 Score=992.47 Aligned_cols=405 Identities=49% Similarity=0.849 Sum_probs=365.5
Q ss_pred eEEEeecCcCCCCCCCceEEEeeeecccccCCCCeeeeccCCCCCCCCCccEEEEEEEEEEecccceeEEEEEECCeEee
Q 037376 58 RYFEVTKPIEIPKTNPCSHHILHHDFAFTYGKPPVLANYTPPSHCSSKKVSKIVLEWNATCKGRQFDRIFGVWLGGVELL 137 (612)
Q Consensus 58 ~~FEV~~Pv~~P~~~~c~~~Ll~h~F~nSyg~Pp~~~~YtPP~~c~~~~~s~VvL~l~~t~~G~QyDRl~~v~l~gvev~ 137 (612)
|+|||++|+..|+. +|+++||+|+||||||+|++...|+||. | +|++|||+|+++|+|||||||++|||||+|||
T Consensus 1 E~fev~~P~~~p~~-~c~~~l~~h~F~~Syg~P~~~~~y~Pp~-c---~~~~VvL~~~~~~~G~QyDRl~~v~l~gvev~ 75 (427)
T PF12222_consen 1 EVFEVTPPVVTPKG-VCSVLLLNHSFGNSYGKPPVGTYYTPPD-C---SFSKVVLNLTVTSKGRQYDRLAGVWLGGVEVW 75 (427)
T ss_pred CceEEcCCCCCCCC-ceEEEEeeeeeccccCCCceeeecCCCC-C---cceEEEEEEEEEecceecceEEEEEECCEEEE
Confidence 78999999988875 9999999999999999999876788777 6 79999999999999999999999999999999
Q ss_pred eeccCCccCCcceEEEEEehhhhhhhhcccCCeeEEEEECceecceeeeEEEEEEEEEEecCCCCCCCCCCCcccccCCC
Q 037376 138 RSCTAEPRATGIVWSVKKDLTRYHSLLVKNETQTFAVYLGNLVDSTYTGVYHVDITLYFYPADVDINDHEYDSDVLASGY 217 (612)
Q Consensus 138 RtSTaEP~~~gI~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~~~~~~~~~~~ 217 (612)
|||||||+++||+|+++||||+|++||+ ++|+|+|+|+|+||++|||+|+|+|||+||+.+ . +
T Consensus 76 RtSTaEP~~~gi~wt~~KDvT~Y~~L~~--~~~~~~~~l~N~v~~~ytG~f~v~lt~~fy~~~--------~-------~ 138 (427)
T PF12222_consen 76 RTSTAEPTPNGIVWTVSKDVTRYSSLFK--KPQTLIFDLGNIVDDTYTGSFNVTLTLTFYPAD--------D-------P 138 (427)
T ss_pred eecCCCCCCCcceEEEEEcHHHhHHHhc--CCceEEEEeCcEeccccccEEEEEEEEEEecCC--------C-------C
Confidence 9999999999999999999999999999 689999999999999999999999999999875 2 4
Q ss_pred CCCCCEEEeCccC-CCCCCCeeEEeecCCCcceeEEecCCCceEEEEEEEeeCCCCceeeecCCChhhhhcCCCC-CCCC
Q 037376 218 GSKADLIWPISRN-LPLNDGLWFEIENSTDIGVKEFVIPQNVYRAVLEVYVSFHENDEFWYSNVPNDYIAANNLT-DTPG 295 (612)
Q Consensus 218 ~~~aD~IiPis~~-~~~n~g~~f~i~n~~d~~~~~v~iP~Nt~rA~lev~asg~~~eEFWYsNvp~~y~~~~~~~-~~~G 295 (612)
.++||+||||+++ .+.|.+.||.|++.. ..+.+.||+|++||+||||||||++|||||+|+||+|...++.. +.+|
T Consensus 139 ~~~ad~i~Pis~~~s~~n~~~~f~ip~~~--~~~~~~~P~Nt~ra~lei~asg~~~eEFWYsNv~d~~~~~f~~~~~~~G 216 (427)
T PF12222_consen 139 AKPADLILPISANKSPYNSPSWFSIPSDD--AVTSLVLPRNTYRAVLEIFASGNGNEEFWYSNVPDSDVDAFNNAGELYG 216 (427)
T ss_pred CCCCceEECcccCCCCCCCcceEEecCcc--ceeeEeCCCCcEEEEEEEEecCCCcccceecCCChHHhhhhcccccccC
Confidence 6789999999987 556778999996433 45566799999999999999999999999999999998887654 4599
Q ss_pred CCCeeEEEEEECCeEEEEEcccceEEeCCccCCCccccccCCCCCCCceeEEcccccccccCCCeeEEEEEEEcC-----
Q 037376 296 NGPFREVVVSLDGEVVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPTYDIEITPFLGNLLDGKTHKFGFSVTNA----- 370 (612)
Q Consensus 296 ~GpfREV~V~iDG~laGv~~PfPvIfTGGI~P~lWrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~----- 370 (612)
|||||||+|+|||++||++|||||||||||+|+|||||++|||||+|+|+||||||||+|+|||+|+|+|+|+|+
T Consensus 217 ~gpfReV~V~iDg~lag~~~PfPvIfTGGI~P~lWrPI~~i~aFdl~~y~iDlTPfLp~L~dg~~h~~~i~V~~~~~~~~ 296 (427)
T PF12222_consen 217 NGPFREVQVYIDGQLAGVVWPFPVIFTGGINPFLWRPIVGIGAFDLPSYDIDLTPFLPLLWDGKPHTFEIRVVNAEDDGD 296 (427)
T ss_pred CCCcEEEEEEECCEEEEEECCCCeEEeCCcCcccccccCCCcccCCCceeEEeccchhcccCCCccEEEEEEEccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---------cccEEEeeEEEEEEeCCCceeeceeEEEecCceeeeeecc----cccCce--EEEEEEEEEEEEEEEEEcC
Q 037376 371 ---------LNVWYIDANLHLWLDGRSAKTEGKLLKHSSVPLQVYLESN----FKGLDG--TFLTNVNRSISSLGWVESS 435 (612)
Q Consensus 371 ---------~~~W~vsgnL~lwlD~~~~~ttG~l~~~~~p~~~~~~~~~----~~g~~g--~~~~~a~R~ls~~g~V~ss 435 (612)
.++|+|+||||||+|++...++|++....++.......+. ..|.++ .|.+.++|+++++|
T Consensus 297 g~~~~~~~v~~~W~VsgnL~lwld~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~y~~~~~r~l~~~~----- 371 (427)
T PF12222_consen 297 GSATLTNSVGSNWYVSGNLFLWLDSSSSSTTGKSPSVVSPEPSISVSSFISIFSTGFNGTLSYSVSASRSLSITS----- 371 (427)
T ss_pred ccccccCccCceEEEEEEEEEEECCCCcccCCCccceecCCcceeeeeeeeccCCCceeEEEEEEEEEEEEEEee-----
Confidence 3799999999999999999999988877776654443322 245665 48999999999988
Q ss_pred CCceEEEEEEEEEEEEeEEecCCCceeeEEEEEEEeeeEEEEecCCceeEeEEEEEeee
Q 037376 436 HGKITTHFIQDFAYSNSMVMGNSGNLQIVNQTIHFDDTVSAEMQSSNAYFTKSFKVFPF 494 (612)
Q Consensus 436 ~G~~ttt~~Q~~~f~N~~~~s~~G~~Q~v~q~~~~~~~v~~~~~~~~~~~~~~~~~yPL 494 (612)
+.+++|+|+++|+|.|.++++|..|.++|++++...++...+.. ++..+.+++|||
T Consensus 372 --~~~~~~~q~l~~sN~~~~s~~g~~Q~~~q~~~~~~~~~~~~~~~-~~~~~~~~~yPl 427 (427)
T PF12222_consen 372 --SSTVSWSQNLSYSNVQQYSKFGNSQSVNQTTSGTSSSTHFGESA-IYTSSLTFSYPL 427 (427)
T ss_pred --EEEEEEEeEEEEEEEEEEcccCcEEEEEEEEEeeEEEEEecccc-eeEEEEEEeccC
Confidence 67899999999999999999999999999999987765544433 677799999998
|
PNGase A is a heterodimer composed of a large and small subunit []. This entry represents the PNGase A precursor, which contains both subunits and is activated by proteolytic cleavage. |
| >PF09113 N-glycanase_C: Peptide-N-glycosidase F, C terminal; InterPro: IPR015197 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets | Back alignment and domain information |
|---|
| >PF09112 N-glycanase_N: Peptide-N-glycosidase F, N terminal; InterPro: IPR015196 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 612 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 85/620 (13%), Positives = 161/620 (25%), Gaps = 203/620 (32%)
Query: 35 RNSNLYSSELPTLHLNTTQIPPTRYFEVTKPIEIPKTNPCSHHILHHDFAFTYGKP---- 90
+ +Y + L+ N Q+ +Y V++ K + G
Sbjct: 107 MMTRMYIEQRDRLY-NDNQVFA-KYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 91 PVLANYTPPSHCSSKKVSKIVLEWNATCKGRQFDRIFGVWLGGVELLRSCTAEPRATGIV 150
+A C S KV + + +IF WL L++C P
Sbjct: 164 TWVALDV----CLSYKV-----------QCKMDFKIF--WLN----LKNCN-SPE----- 196
Query: 151 WSVKKDLTRYHSLLVKNETQTFAVYLGNLVDSTYTGVYHVD-----ITLYF----YPADV 201
+V + L + + N T D + + + Y +
Sbjct: 197 -TVLEMLQKLLYQIDPNWTS--------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 202 DINDHEYDSDVLAS-GYGSKADLIWPISRNLPLNDGLWFEIENSTDIGVKEFVIPQNVYR 260
+ + ++ + K L+ +R V +F+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKI-LL--TTR----------------FKQVTDFLSAATTTH 288
Query: 261 AVLEVYVSFHENDEFWYSNVPNDYIAANNLTDTPGNGPFREVVVSLDGEVVGAVWPFTVV 320
L+ H + TP SL + +
Sbjct: 289 ISLD-----HHSMTL-----------------TPDEV------KSLLLKYLD-------- 312
Query: 321 FTGGINPLLWRPITAIGSFDLPTYDIEITPFLGNLLDGKTHKFGFSVTNALNVW-YIDAN 379
DLP + P ++ S+ + L W
Sbjct: 313 ---------------CRPQDLPREVLTTNPRRLSI-------IAESIRDGLATWDN---- 346
Query: 380 LHLWLDGRSAKTEGKLLKHSSVPLQ-VYLESNFKGLDGTFLTNVNRSISSLG--WVESSH 436
W K +++ S L+ F L F + + L W +
Sbjct: 347 ---WKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVI- 400
Query: 437 GKITTHFIQDFAYSNSMVMGNSGNLQIVNQTIHFDDTVSAEMQSS------NAY-FTKSF 489
K + + + S+V I +I+ + V E + + + Y K+F
Sbjct: 401 -KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 490 KVFPF-------YMYSNTEDKGNGTSLSLANVTLGFNEKNSESAG--SGFSESSLKNLQN 540
Y YS+ +G + KN E + F L + +
Sbjct: 460 DSDDLIPPYLDQYFYSH----------------IGHHLKNIEHPERMTLFRMVFL-DFR- 501
Query: 541 GQGVMFVKNNLVISGL-----GST----QQVYHYHGDNFCYFRNISSSNYTILYD--KVI 589
F++ + GS QQ+ Y Y + ++ +
Sbjct: 502 -----FLEQKIRHDSTAWNASGSILNTLQQLKFYKP----YICDNDPKYERLVNAILDFL 552
Query: 590 NKCEKGT--EPHLDPSLLKI 607
K E+ + D LL+I
Sbjct: 553 PKIEENLICSKYTD--LLRI 570
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 612 | |||
| 3ks7_A | 397 | Putative putative pngase F; putative peptide:N-gly | 98.65 | |
| 3pms_A | 326 | Peptide:N-glycosidase F; jelly roll fold, N-glycan | 98.4 |
| >3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F (pngase F), structural GENO joint center for structural genomics; 2.30A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-06 Score=89.57 Aligned_cols=225 Identities=20% Similarity=0.285 Sum_probs=152.5
Q ss_pred cEEEEEEEEEEecccceeEEEEEE-------------C---------------------------CeEeeeeccCCccC-
Q 037376 108 SKIVLEWNATCKGRQFDRIFGVWL-------------G---------------------------GVELLRSCTAEPRA- 146 (612)
Q Consensus 108 s~VvL~l~~t~~G~QyDRl~~v~l-------------~---------------------------gvev~RtSTaEP~~- 146 (612)
..|.|+++..++|.-|||-+.+|| . .+||.|==||.--.
T Consensus 65 ~~v~~~~~~~SnGD~~DktGS~Fvip~~~~~~~l~i~~g~~~~P~~~~~~~~~~~Gii~~~~Y~p~~ElmRf~TpfGvg~ 144 (397)
T 3ks7_A 65 VSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGH 144 (397)
T ss_dssp EEEEEEEEEEESSCCSCCEEEEEECCSSCSBCHHHHHTTCCCCCCCCHHHHTTCTTSSCBTTBCCCEEEEEEECCSSTBT
T ss_pred CeEEEEEEEccCCCcccccCCEEEEECccccchhhhhcCcccCCceecCCcceeeeeeecCCCCCcchhhhccccccccc
Confidence 489999999999999999999997 2 47888977765421
Q ss_pred -Cc------------------ceEEEEEehhhhhhhhcccCCeeEEEEECceecceeeeEEEEEEEEEEecCCCCCCCCC
Q 037376 147 -TG------------------IVWSVKKDLTRYHSLLVKNETQTFAVYLGNLVDSTYTGVYHVDITLYFYPADVDINDHE 207 (612)
Q Consensus 147 -~g------------------I~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~~~~~~~~ 207 (612)
++ =.++.+.|||.+.+||+ +...+.+.++|+-. +-|.|+|.+.|+..+.
T Consensus 145 ~~~~~~~~~~k~~pvyi~~W~d~v~W~qDITdL~pLL~--Gev~iGi~i~nW~~----~G~~vSL~l~f~~g~~------ 212 (397)
T 3ks7_A 145 YSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLE--GEAYVGIYIDTWTS----EGYLVNADIDVKESRL------ 212 (397)
T ss_dssp TCCSSCGGGTTTSCTTCCCCCSCEEEEEECGGGGGGTB--EEEEEEEEECCCSS----SCEEEEEEEEEEECSC------
T ss_pred cccccccchhcCCcccccccccCceEEeEchhhHHhhC--CCeEEEEEeccccc----ccEEEEEEEEEecCCc------
Confidence 11 12567899999999999 45666667776533 3578999999997651
Q ss_pred CCcccccCCCCCCCCEEEeCccCCCCCCCeeEE-eecCCCcceeEEecCCCceEEEEEEEeeCCCCceeeecCCChhhhh
Q 037376 208 YDSDVLASGYGSKADLIWPISRNLPLNDGLWFE-IENSTDIGVKEFVIPQNVYRAVLEVYVSFHENDEFWYSNVPNDYIA 286 (612)
Q Consensus 208 ~~~~~~~~~~~~~aD~IiPis~~~~~n~g~~f~-i~n~~d~~~~~v~iP~Nt~rA~lev~asg~~~eEFWYsNvp~~y~~ 286 (612)
.........|+||-... .--|+.|. +-+. ......+++|.|+..|.|-.-++|||.+ .| =++|.
T Consensus 213 -------~~~~~~~~~V~PLfNt~-~~~Gq~Y~d~fn~-k~l~v~Ftlp~~~knv~Lr~itTGHGg~----~g-gdEFc- 277 (397)
T 3ks7_A 213 -------ACDVLPKRHVEPLMNTV-YYMGQSYPDIFAR-RDVSTDFTVPKGAKNIRLKYIVTGHGGH----SG-GDEFV- 277 (397)
T ss_dssp -------TTCBCCCEEEEEEEECC-CCSSCCCCCGGGT-CCEEEEEEECTTCEEEEEEEEEEEECCS----TT-STTTS-
T ss_pred -------chhccccceEEEeeccc-cccCccccchhcc-cceeEEEEcCCCccEEEEEEEEecCCCC----CC-CCccc-
Confidence 11233467899998632 11144553 3344 4456899999999999999999999863 12 13322
Q ss_pred cCCCCCCCCCCCeeEEEEEECCeEEEEEccc-------ceEE--eCCc----------------------------cCCC
Q 037376 287 ANNLTDTPGNGPFREVVVSLDGEVVGAVWPF-------TVVF--TGGI----------------------------NPLL 329 (612)
Q Consensus 287 ~~~~~~~~G~GpfREV~V~iDG~laGv~~Pf-------PvIf--TGGI----------------------------~P~l 329 (612)
.|+=.|+|||.++=.-.|- +..- +|++ +=.-
T Consensus 278 ------------~k~h~v~vdG~~v~~~~pWr~dC~s~r~~Np~sG~W~~~~~a~~~~~~g~~~ke~e~~lsSSDlSRsN 345 (397)
T 3ks7_A 278 ------------QKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSN 345 (397)
T ss_dssp ------------CCCEEEEETTEEEEEECCCBSCGGGGGGGCTTCCEEEEEEEEEEEETTEEEEEEEEEEEEGGGSCBSS
T ss_pred ------------ceeeEEEECCEEeEEeccccccccccccccCCCCccccccchhhcccccccchhhccccccccccccc
Confidence 3667889999988665543 2221 2221 1234
Q ss_pred ccccccCCCCCCCceeEEcccccccccCCCeeEEEEEEEcC-------cccEEEeeEEE
Q 037376 330 WRPITAIGSFDLPTYDIEITPFLGNLLDGKTHKFGFSVTNA-------LNVWYIDANLH 381 (612)
Q Consensus 330 WrPI~~igAFdlp~y~iDlTPfLp~L~DG~~H~~~i~V~n~-------~~~W~vsgnL~ 381 (612)
|=|=. +.++..|+|.- |.-| .|+|.|.|..| .+.|.|||-|+
T Consensus 346 WCPG~-----~v~p~~i~Lg~----l~~G-~Ht~~v~iP~a~~~~g~~~~~W~VS~~lv 394 (397)
T 3ks7_A 346 WCPGS-----DVVPEEAVIGT----LAPG-KHTFTVSIPEAQAVDGNKLNHWLVSAYLV 394 (397)
T ss_dssp CCTTC-----EECCEEEEEEC----CCSE-EEEEEEECTTCCCCBTTBCCEEEEEEEEE
T ss_pred CCCCc-----ccCceEEeccc----cCCC-ceEEEEECCCCcccCCcccceEEEEEEEe
Confidence 54422 34567777643 3334 89999999854 47999999775
|
| >3pms_A Peptide:N-glycosidase F; jelly roll fold, N-glycanase, hydrolase; HET: GOL; 1.57A {Elizabethkingia meningoseptica} PDB: 1pgs_A 1pnf_A* 1png_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 612 | |||
| d1pgsa1 | 137 | Peptide:N-glycosidase F, PNGase F {Flavobacterium | 97.59 | |
| d1pgsa2 | 174 | Peptide:N-glycosidase F, PNGase F {Flavobacterium | 84.97 | |
| d1jz8a3 | 207 | beta-Galactosidase {Escherichia coli [TaxId: 562]} | 81.67 |
| >d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: PHM/PNGase F family: Glycosyl-asparaginase domain: Peptide:N-glycosidase F, PNGase F species: Flavobacterium meningosepticum [TaxId: 238]
Probab=97.59 E-value=0.00025 Score=63.52 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=88.5
Q ss_pred eeecccccCCCCeeeeccCCCCCCCCCccEEEEEEEEEE--ec-ccceeEEEEEE------CCeEeeeeccCCccCCc--
Q 037376 80 HHDFAFTYGKPPVLANYTPPSHCSSKKVSKIVLEWNATC--KG-RQFDRIFGVWL------GGVELLRSCTAEPRATG-- 148 (612)
Q Consensus 80 ~h~F~nSyg~Pp~~~~YtPP~~c~~~~~s~VvL~l~~t~--~G-~QyDRl~~v~l------~gvev~RtSTaEP~~~g-- 148 (612)
++.|+.-|++ -+.+.+.=|.+. .+|++|.|.++.+| .| -.+||+|.|+| ...||-|==||-=....
T Consensus 13 ~~~~ggG~~~-~~~~~~~lP~~~--s~y~~i~m~~~l~Cp~~gC~~WD~~a~i~v~~~~~~~~~e~~r~itpyG~g~~~~ 89 (137)
T d1pgsa1 13 KNAFGDGLSQ-SAEGTFTFPADV--TTVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGRFITPYWVGTEKL 89 (137)
T ss_dssp EECCSSSCCS-EEEEEEEECSCC--TTEEEEEEEEEECCGGGCSCCSCCEEEEEEECTTTCCEEEEEEEECCSSSCSTTS
T ss_pred hccccCCccc-eEEEEEECCccc--cCcceEEEEEEEecCCCCCCccceEEEEEeecCCCccceeeeheecccccccccC
Confidence 3578887776 356778778764 59999999999998 46 78999999999 45788888887654322
Q ss_pred -ceEEEEEehhhhhhhhcccCCeeEEEEECceecceeeeEEEEEEEEEEecCC
Q 037376 149 -IVWSVKKDLTRYHSLLVKNETQTFAVYLGNLVDSTYTGVYHVDITLYFYPAD 200 (612)
Q Consensus 149 -I~Wtv~KDvT~Y~sLf~~~~~~~l~~~L~NiVd~~yTG~f~vtltl~fY~~~ 200 (612)
.-|. -|||.|.+||+ +...+.+.++|+..+. +.++|.+.|+.+.
T Consensus 90 ~~~W~--~DVTd~~~lL~--g~v~i~~~i~~W~~~g----~~v~l~f~Fi~G~ 134 (137)
T d1pgsa1 90 PRGLE--IDVTDFKSLLS--GNTELKIYTETWLAKG----REYSVDFDIVYGT 134 (137)
T ss_dssp SSCEE--EECGGGTTTSS--EEEEEEEEECCCSTTC----EEEEEEEEEEESC
T ss_pred CCCcE--EechhhHHHhC--CCEEEEEEEccccCCC----EEEEEEEEEecCc
Confidence 2474 89999999999 6789999999998865 5789999999875
|
| >d1pgsa2 b.121.1.1 (A:141-314) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]} | Back information, alignment and structure |
|---|
| >d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|