Citrus Sinensis ID: 037382

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
cHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccEEcHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHHHcccccccccccc
ccHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccEcccccHHHHHHHHHHHHcccccEEEccccEEEEHHHHHHHcccccccccccHHHHHHcEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHccHHHHHHHHHHHHHHccccHHHHcccHcccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccc
MLVRVNTLLQGYSGIRFEILEAITKLLNhsitpclplrgtitasgdlvpLSYIAGlltgrpnskatgpngetidaQEASkqagfgffelqpkeglalvngtAVGSGLASMVLFDANNLALLSEILSAIFAEVmqgkpeftdhlthklkhhpgQIEAAAIMEHILDGSSYVKAAKKlheidplqkpkqdryalrtspqwlgpqIEVIRFATKSIEREInsvndnplidvsrnkalhggnfqgtpigvsmdNTRLAIAAIGKLMFAQFSELVNDFynnglpsnlsggrnpsldygfkGAEIAMASYCSELQFlanpvtnhvqsaeqhnqdvnslglissrktAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTvgangelhpsrfCEKDLLKAADREHvfayiddpcsatypLMQKLRQVLVEHAlnngeneknaNSSIFQKIAAFEEELKAVLPKEVENARQtvengnptipnrikecrsyplYRLVREELGtnfltgekvtspgeeFDKVFTAMCQGKIIDPMLEClwewngaplpic
mlvrvntllqgysgIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHeidplqkpkqdryalrtspqwlgpqiEVIRFATKSIEREINSVNDNPLIDVSRNKALhggnfqgtpigvsMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTvgangelhpsrfCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNgeneknanSSIFQKIAAFEEELKAVLPKevenarqtvengnptipnrikecrsYPLYRLVREELGTNfltgekvtspgeEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
**VRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLT************************GFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEI**********YALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV************LGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALN***********IFQKIAAFEEELKAVL*****************IPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAP****
MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS****************PKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ******QDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEEN***TVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHAL************IFQKIAAFEEELKAVLPKEVENARQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
P45729718 Phenylalanine ammonia-lya N/A no 1.0 0.772 0.868 0.0
P45730715 Phenylalanine ammonia-lya no no 1.0 0.776 0.872 0.0
O64963717 Phenylalanine ammonia-lya N/A no 1.0 0.774 0.874 0.0
O23865708 Phenylalanine ammonia-lya N/A no 1.0 0.783 0.872 0.0
P25872715 Phenylalanine ammonia-lya N/A no 1.0 0.776 0.867 0.0
P45733712 Phenylalanine ammonia-lya N/A no 1.0 0.779 0.876 0.0
Q42667722 Phenylalanine ammonia-lya N/A no 1.0 0.768 0.870 0.0
P45726714 Phenylalanine ammonia-lya N/A no 1.0 0.777 0.863 0.0
P35513712 Phenylalanine ammonia-lya N/A no 1.0 0.779 0.870 0.0
P45732715 Phenylalanine ammonia-lya N/A no 1.0 0.776 0.868 0.0
>sp|P45729|PAL3_PETCR Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1 Back     alignment and function desciption
 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/557 (86%), Positives = 525/557 (94%), Gaps = 2/557 (0%)

Query: 1   MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
           MLVR+NTLLQGYSGIRFEILEAITK LNH+ITPCLPLRGTITASGDLVPLSYIAGLLTGR
Sbjct: 162 MLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGR 221

Query: 61  PNSKATGPNGETIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFDANNL 118
           PNSKA GP G T+  +EA K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLF+AN L
Sbjct: 222 PNSKAVGPTGVTLSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANIL 281

Query: 119 ALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHE 178
           A+L+E++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YVKAA+KLHE
Sbjct: 282 AVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHE 341

Query: 179 IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238
           +DPLQKPKQDRYALRTSPQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGN
Sbjct: 342 MDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGN 401

Query: 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 298
           FQG+PIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE
Sbjct: 402 FQGSPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 461

Query: 299 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVAL 358
           IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV L
Sbjct: 462 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGL 521

Query: 359 CQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYI 418
           CQAIDLRHLEENLK TVK+TVSQVA++VLT+G NGELHPSRFCEKDLL+  DRE++FAYI
Sbjct: 522 CQAIDLRHLEENLKSTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYI 581

Query: 419 DDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478
           DDPCSATYPLMQKLR+ LVEHALNNG+ E+N ++SIFQKIAAFE+ELKA+LPKEVE AR 
Sbjct: 582 DDPCSATYPLMQKLRETLVEHALNNGDKERNLSTSIFQKIAAFEDELKALLPKEVETARA 641

Query: 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538
            +E+GNP IPNRIKECRSYPLY+ VREELGT +LTGEKV SPGEEF+KVFTAM +G+IID
Sbjct: 642 ALESGNPAIPNRIKECRSYPLYKFVREELGTEYLTGEKVRSPGEEFEKVFTAMSKGEIID 701

Query: 539 PMLECLWEWNGAPLPIC 555
           P+LECL  WNGAPLPIC
Sbjct: 702 PLLECLESWNGAPLPIC 718
This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.
Petroselinum crispum (taxid: 4043)
EC: 4EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 4
>sp|P45730|PALY_POPTR Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1 Back     alignment and function description
>sp|O64963|PAL1_PRUAV Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1 Back     alignment and function description
>sp|O23865|PAL1_DAUCA Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1 Back     alignment and function description
>sp|P25872|PAL1_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1 Back     alignment and function description
>sp|P45733|PAL3_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q42667|PALY_CITLI Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1 Back     alignment and function description
>sp|P45726|PALY_CAMSI Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1 Back     alignment and function description
>sp|P35513|PAL2_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2 Back     alignment and function description
>sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
4808126 721 phenylalanine-ammonia lyase [Citrus clem 1.0 0.769 0.992 0.0
4808128 718 phenylalanine-ammonia lyase [Citrus clem 1.0 0.772 0.963 0.0
237690152 723 phenylalanine ammonia-lyase [Litchi chin 0.998 0.766 0.920 0.0
225454653 710 PREDICTED: phenylalanine ammonia-lyase [ 1.0 0.781 0.899 0.0
122893276 710 phenylalanin ammonia-lyase [Vitis vinife 1.0 0.781 0.897 0.0
225454655 710 PREDICTED: phenylalanine ammonia-lyase [ 1.0 0.781 0.895 0.0
225454662 710 PREDICTED: phenylalanine ammonia-lyase [ 1.0 0.781 0.894 0.0
371534665 710 phenylalanine ammonia-lyase [Vitis vinif 1.0 0.781 0.897 0.0
359489856 710 PREDICTED: phenylalanine ammonia-lyase-l 1.0 0.781 0.895 0.0
147839022 707 hypothetical protein VITISV_009233 [Viti 1.0 0.785 0.895 0.0
>gi|4808126|emb|CAB42793.1| phenylalanine-ammonia lyase [Citrus clementina x Citrus reticulata] Back     alignment and taxonomy information
 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/555 (99%), Positives = 553/555 (99%)

Query: 1   MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
           MLVRVNTLLQGYSGIRFEIL+AITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR
Sbjct: 167 MLVRVNTLLQGYSGIRFEILDAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 226

Query: 61  PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
           PNSKATGPNGE IDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL
Sbjct: 227 PNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 286

Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
           LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID
Sbjct: 287 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 346

Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
           PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ
Sbjct: 347 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 406

Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
           GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA
Sbjct: 407 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 466

Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
           MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ
Sbjct: 467 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 526

Query: 361 AIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDD 420
           AIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDD
Sbjct: 527 AIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDD 586

Query: 421 PCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV 480
           PCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV
Sbjct: 587 PCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV 646

Query: 481 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPM 540
           ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGE+FDKVFTAMCQGKIIDPM
Sbjct: 647 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPM 706

Query: 541 LECLWEWNGAPLPIC 555
           LECL EWNGAPLPIC
Sbjct: 707 LECLREWNGAPLPIC 721

Source: Citrus clementina x Citrus reticulata

Species: Citrus clementina x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4808128|emb|CAB42794.1| phenylalanine-ammonia lyase [Citrus clementina x Citrus reticulata] Back     alignment and taxonomy information
>gi|237690152|gb|ACR15762.1| phenylalanine ammonia-lyase [Litchi chinensis] Back     alignment and taxonomy information
>gi|225454653|ref|XP_002268181.1| PREDICTED: phenylalanine ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|122893276|gb|ABM67591.1| phenylalanin ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454655|ref|XP_002268256.1| PREDICTED: phenylalanine ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454662|ref|XP_002268732.1| PREDICTED: phenylalanine ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|371534665|gb|AEX32784.1| phenylalanine ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489856|ref|XP_003633987.1| PREDICTED: phenylalanine ammonia-lyase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147839022|emb|CAN77065.1| hypothetical protein VITISV_009233 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
TAIR|locus:2057981725 PAL1 "PHE ammonia lyase 1" [Ar 1.0 0.765 0.858 3e-259
TAIR|locus:2101958717 PAL2 "phenylalanine ammonia-ly 1.0 0.774 0.854 3.4e-258
TAIR|locus:2076244707 PAL4 "phenylalanine ammonia-ly 1.0 0.785 0.841 3.9e-250
ASPGD|ASPL0000017810686 AN3897 [Emericella nidulans (t 0.672 0.543 0.428 6.3e-76
ASPGD|ASPL0000000997701 AN6075 [Emericella nidulans (t 0.888 0.703 0.36 6.3e-76
TIGR_CMR|SO_4374521 SO_4374 "histidine ammonia-lya 0.663 0.706 0.341 8e-53
UNIPROTKB|B8ZV93526 tam "Tyrosine 2,3-aminomutase" 0.661 0.697 0.340 8.5e-49
UNIPROTKB|B8ZV94526 tam "Tyrosine 2,3-aminomutase" 0.661 0.697 0.337 1.1e-48
UNIPROTKB|Q9KSQ4511 hutH "Histidine ammonia-lyase" 0.636 0.690 0.336 9.8e-48
TIGR_CMR|VC_1202511 VC_1202 "histidine ammonia-lya 0.636 0.690 0.336 9.8e-48
TAIR|locus:2057981 PAL1 "PHE ammonia lyase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2495 (883.3 bits), Expect = 3.0e-259, P = 3.0e-259
 Identities = 478/557 (85%), Positives = 518/557 (92%)

Query:     1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
             MLVR+NTLLQG+SGIRFEILEAIT  LN++ITP LPLRGTITASGDLVPLSYIAGLLTGR
Sbjct:   169 MLVRINTLLQGFSGIRFEILEAITSFLNNNITPSLPLRGTITASGDLVPLSYIAGLLTGR 228

Query:    61 PNSKATGPNGETIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFDANNL 118
             PNSKATGPNGE + A+EA K AG   GFF+LQPKEGLALVNGTAVGSG+ASMVLF+ N L
Sbjct:   229 PNSKATGPNGEALTAEEAFKLAGISSGFFDLQPKEGLALVNGTAVGSGMASMVLFETNVL 288

Query:   119 ALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHE 178
             ++L+EILSA+FAEVM GKPEFTDHLTH+LKHHPGQIEAAAIMEHILDGSSY+K A+KLHE
Sbjct:   289 SVLAEILSAVFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYMKLAQKLHE 348

Query:   179 IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238
             +DPLQKPKQDRYALRTSPQWLGPQIEVIR+ATKSIEREINSVNDNPLIDVSRNKA+HGGN
Sbjct:   349 MDPLQKPKQDRYALRTSPQWLGPQIEVIRYATKSIEREINSVNDNPLIDVSRNKAIHGGN 408

Query:   239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 298
             FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL+  RNPSLDYGFKGAE
Sbjct:   409 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAE 468

Query:   299 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVAL 358
             IAMASYCSELQ+LANPVT+HVQSAEQHNQDVNSLGLISSRKT+EAVDILKLMS+TFLVA+
Sbjct:   469 IAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLMSTTFLVAI 528

Query:   359 CQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYI 418
             CQA+DLRHLEENL+ TVK+TVSQVA+KVLT G NGELHPSRFCEKDLLK  DRE V+ Y 
Sbjct:   529 CQAVDLRHLEENLRQTVKNTVSQVAKKVLTTGVNGELHPSRFCEKDLLKVVDREQVYTYA 588

Query:   419 DDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478
             DDPCSATYPL+QKLRQV+V+HAL NGE+EKNA +SIF KI AFEEELKAVLPKEVE AR 
Sbjct:   589 DDPCSATYPLIQKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEVEAARA 648

Query:   479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538
               +NG   IPNRIKECRSYPLYR VREELGT  LTGEKVTSPGEEFDKVFTA+C+GKIID
Sbjct:   649 AYDNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIID 708

Query:   539 PMLECLWEWNGAPLPIC 555
             PM+ECL EWNGAP+PIC
Sbjct:   709 PMMECLNEWNGAPIPIC 725
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006559 "L-phenylalanine catabolic process" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009699 "phenylpropanoid biosynthetic process" evidence=TAS
GO:0016841 "ammonia-lyase activity" evidence=IEA
GO:0045548 "phenylalanine ammonia-lyase activity" evidence=ISS;IDA;TAS
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0080167 "response to karrikin" evidence=IEP
GO:0009555 "pollen development" evidence=IMP
GO:0009819 "drought recovery" evidence=IMP
GO:0010224 "response to UV-B" evidence=IMP
GO:0046244 "salicylic acid catabolic process" evidence=IMP
GO:0046274 "lignin catabolic process" evidence=IMP
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA;TAS
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
GO:0006952 "defense response" evidence=TAS
TAIR|locus:2101958 PAL2 "phenylalanine ammonia-lyase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076244 PAL4 "phenylalanine ammonia-lyase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017810 AN3897 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000997 AN6075 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4374 SO_4374 "histidine ammonia-lyase, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZV93 tam "Tyrosine 2,3-aminomutase" [Myxococcus fulvus (taxid:33)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZV94 tam "Tyrosine 2,3-aminomutase" [Myxococcus sp. Mx-B0 (taxid:563923)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSQ4 hutH "Histidine ammonia-lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1202 VC_1202 "histidine ammonia-lyase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P31425PAL1_SOLTU4, ., 3, ., 1, ., 2, 40.84561.00.7708N/Ano
P45726PALY_CAMSI4, ., 3, ., 1, ., 2, 40.86351.00.7773N/Ano
P45727PALY_PERAE4, ., 3, ., 1, ., 2, 40.86731.00.8951N/Ano
O04058PALY_HELAN4, ., 3, ., 1, ., 2, 40.87250.91530.7616N/Ano
P25872PAL1_TOBAC4, ., 3, ., 1, ., 2, 40.86711.00.7762N/Ano
P45728PAL2_PETCR4, ., 3, ., 1, ., 2, 40.86171.00.7751N/Ano
P45729PAL3_PETCR4, ., 3, ., 1, ., 2, 40.86891.00.7729N/Ano
P19143PAL3_PHAVU4, ., 3, ., 1, ., 2, 40.76610.99630.7788N/Ano
P19142PAL2_PHAVU4, ., 3, ., 1, ., 2, 40.86171.00.7794N/Ano
P52777PALY_PINTA4, ., 3, ., 1, ., 2, 40.71270.98910.7281N/Ano
Q43052PAL2_POPKI4, ., 3, ., 1, ., 2, 40.85630.99810.7802N/Ano
Q9SMK9PAL2_CICAR4, ., 3, ., 1, ., 2, 40.84731.00.7729N/Ano
Q8VXG7PALY_MAIZE4, ., 3, ., 1, ., 2, 50.71400.99450.7852N/Ano
P27991PAL1_SOYBN4, ., 3, ., 1, ., 2, 40.85790.99810.7769yesno
P27990PALY_MEDSA4, ., 3, ., 1, ., 2, 40.86351.00.7655N/Ano
P26600PAL5_SOLLC4, ., 3, ., 1, ., 2, 40.85271.00.7697N/Ano
Q42858PAL2_IPOBA4, ., 3, ., 1, ., 2, 40.85631.00.7838N/Ano
O23924PALY_DIGLA4, ., 3, ., 1, ., 2, 40.85121.00.7784N/Ano
P45733PAL3_TOBAC4, ., 3, ., 1, ., 2, 40.87611.00.7794N/Ano
P45732PALY_STYHU4, ., 3, ., 1, ., 2, 40.86891.00.7762N/Ano
P45731PAL1_POPKI4, ., 3, ., 1, ., 2, 40.86891.00.8137N/Ano
P45735PALY_VITVI4, ., 3, ., 1, ., 2, 40.90620.74951.0nono
P45734PALY_TRISU4, ., 3, ., 1, ., 2, 40.85451.00.7655N/Ano
Q04593PAL2_PEA4, ., 3, ., 1, ., 2, 40.85430.99630.7638N/Ano
Q42667PALY_CITLI4, ., 3, ., 1, ., 2, 40.87071.00.7686N/Ano
P07218PAL1_PHAVU4, ., 3, ., 1, ., 2, 40.83390.90810.9960N/Ano
O23865PAL1_DAUCA4, ., 3, ., 1, ., 2, 40.87251.00.7838N/Ano
Q42609PALY_BROFI4, ., 3, ., 1, ., 2, 40.84020.99810.7880N/Ano
Q9M568PAL1_RUBID4, ., 3, ., 1, ., 2, 40.84170.99810.7802N/Ano
O49835PAL1_LITER4, ., 3, ., 1, ., 2, 40.84381.00.7816N/Ano
O49836PAL2_LITER4, ., 3, ., 1, ., 2, 40.82401.00.7872N/Ano
Q43210PALY_WHEAT4, ., 3, ., 1, ., 2, 40.81681.00.7928N/Ano
P35510PAL1_ARATH4, ., 3, ., 1, ., 2, 40.85811.00.7655yesno
P35511PAL1_SOLLC4, ., 3, ., 1, ., 2, 40.84201.00.7883N/Ano
P35513PAL2_TOBAC4, ., 3, ., 1, ., 2, 40.87071.00.7794N/Ano
Q01861PAL1_PEA4, ., 3, ., 1, ., 2, 40.84530.99630.7648N/Ano
O64963PAL1_PRUAV4, ., 3, ., 1, ., 2, 40.87431.00.7740N/Ano
P31426PAL2_SOLTU4, ., 3, ., 1, ., 2, 40.86080.76030.7152N/Ano
P24481PAL1_PETCR4, ., 3, ., 1, ., 2, 40.86171.00.7751N/Ano
P14166PAL1_IPOBA4, ., 3, ., 1, ., 2, 40.82431.00.7850N/Ano
Q40910PAL4_POPKI4, ., 3, ., 1, ., 2, 40.85841.00.9719N/Ano
A2X7F7PAL2_ORYSI4, ., 3, ., 1, ., 2, 40.80071.00.7784N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.1.240.979
3rd Layer4.3.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013928001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (710 aa)
(Vitis vinifera)
Predicted Functional Partners:
4CL
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (378 aa)
     •• 0.944
GSVIVG00031383001
SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (548 aa)
     •• 0.925
GS1-1
RecName- Full=Glutamine synthetase cytosolic isozyme 1; EC=6.3.1.2; AltName- Full=Glutamate--am [...] (356 aa)
     •• 0.903
GS1-2
RecName- Full=Glutamine synthetase cytosolic isozyme 2; EC=6.3.1.2; AltName- Full=Glutamate--am [...] (356 aa)
     •• 0.903
gs
SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (356 aa)
     •• 0.903
GSVIVG00023655001
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (433 aa)
     •• 0.903
GSVIVG00019881001
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (432 aa)
     •• 0.900
GSVIVG00037866001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (326 aa)
     •  0.899
GSVIVG00037462001
RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (427 aa)
     •  0.899
GSVIVG00036874001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (332 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
PLN02457706 PLN02457, PLN02457, phenylalanine ammonia-lyase 0.0
TIGR01226680 TIGR01226, phe_am_lyase, phenylalanine ammonia-lya 0.0
pfam00221477 pfam00221, Lyase_aromatic, Aromatic amino acid lya 0.0
cd00332444 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL 1e-164
COG2986498 COG2986, HutH, Histidine ammonia-lyase [Amino acid 2e-81
PRK09367500 PRK09367, PRK09367, histidine ammonia-lyase; Provi 3e-74
TIGR01225506 TIGR01225, hutH, histidine ammonia-lyase 2e-68
TIGR03832507 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutas 5e-56
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 1e-17
>gnl|CDD|215251 PLN02457, PLN02457, phenylalanine ammonia-lyase Back     alignment and domain information 
 Score = 1240 bits (3210), Expect = 0.0
 Identities = 490/557 (87%), Positives = 516/557 (92%), Gaps = 2/557 (0%)

Query: 1   MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
           MLVR+NTLLQGYSGIRFEILEAITKLLN ++TPCLPLRGTITASGDLVPLSYIAGLLTGR
Sbjct: 150 MLVRINTLLQGYSGIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGR 209

Query: 61  PNSKATGPNGETIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFDANNL 118
           PNSKA  P+GE + A EA K AG   GFFELQPKEGLALVNGTAVGS LAS VLFDAN L
Sbjct: 210 PNSKAVTPDGEKVTAAEAFKLAGIEGGFFELQPKEGLALVNGTAVGSALASTVLFDANVL 269

Query: 119 ALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHE 178
           A+L+E+LSA+F EVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+KAAKKLHE
Sbjct: 270 AVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHE 329

Query: 179 IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238
            DPLQKPKQDRYALRTSPQWLGPQIEVIR ATKSIEREINSVNDNPLIDV+R+KALHGGN
Sbjct: 330 TDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGN 389

Query: 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 298
           FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE
Sbjct: 390 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 449

Query: 299 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVAL 358
           IAMASYCSELQ+LANPVTNHVQSAEQHNQDVNSLGLIS+RKTAEAVDILKLMSST+LVAL
Sbjct: 450 IAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVAL 509

Query: 359 CQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYI 418
           CQAIDLRHLEENLK  VK+TVSQVA+K LT GANGELHPSRFCEKDLLK  DRE VF+YI
Sbjct: 510 CQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPSRFCEKDLLKVVDREPVFSYI 569

Query: 419 DDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478
           DDPCSATYPLMQKLRQVLVEHAL NGE EKNA++S+F+KI AFEEELKA LPKEVE AR+
Sbjct: 570 DDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAARE 629

Query: 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538
             ENG   IPNRIKECRSYPLYR VREELGT  LTGEK  SPGEEFDKVF A+CQGK+ID
Sbjct: 630 AYENGTAPIPNRIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLID 689

Query: 539 PMLECLWEWNGAPLPIC 555
           P+LECL EWNGAPLPIC
Sbjct: 690 PLLECLKEWNGAPLPIC 706

Length = 706
>gnl|CDD|130293 TIGR01226, phe_am_lyase, phenylalanine ammonia-lyase Back     alignment and domain information
>gnl|CDD|215800 pfam00221, Lyase_aromatic, Aromatic amino acid lyase Back     alignment and domain information
>gnl|CDD|176460 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>gnl|CDD|225533 COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236484 PRK09367, PRK09367, histidine ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase Back     alignment and domain information
>gnl|CDD|163544 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutase Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
PLN02457706 phenylalanine ammonia-lyase 100.0
TIGR01226680 phe_am_lyase phenylalanine ammonia-lyase. Members 100.0
KOG0222715 consensus Phenylalanine and histidine ammonia-lyas 100.0
COG2986498 HutH Histidine ammonia-lyase [Amino acid transport 100.0
TIGR01225506 hutH histidine ammonia-lyase. This enzyme deaminat 100.0
TIGR03832507 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members o 100.0
PRK09367500 histidine ammonia-lyase; Provisional 100.0
cd00332444 PAL-HAL Phenylalanine ammonia-lyase (PAL) and hist 100.0
PF00221473 Lyase_aromatic: Aromatic amino acid lyase; InterPr 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 99.77
PLN02972 763 Histidyl-tRNA synthetase 95.76
>PLN02457 phenylalanine ammonia-lyase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-168  Score=1388.37  Aligned_cols=555  Identities=88%  Similarity=1.304  Sum_probs=537.7

Q ss_pred             CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382            1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK   80 (555)
Q Consensus         1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~   80 (555)
                      |++|+|+|++|||||||+++|+|.+|||+||+|+||++|||||||||+||||||++|+|+|+++++.|+|+++++.|||+
T Consensus       150 MliRlNsL~~G~SGVr~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~  229 (706)
T PLN02457        150 MLVRINTLLQGYSGIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFK  229 (706)
T ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999877778999999999999


Q ss_pred             hcCCCC--cccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHH
Q 037382           81 QAGFGF--FELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA  158 (555)
Q Consensus        81 ~~gl~p--~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~  158 (555)
                      ++||+|  ++|+|||||||||||++|+|+|+++++|+++|+.++++++||++|||+|++++|||++|++||||||+++|+
T Consensus       230 ~aGl~Pp~~~L~~KEGLALiNGTa~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~ih~~RpHpGQ~e~Aa  309 (706)
T PLN02457        230 LAGIEGGFFELQPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAA  309 (706)
T ss_pred             HcCCCCCCcCCCCCcchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHHHhcCCChhHHHHHH
Confidence            999954  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCC
Q 037382          159 IMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN  238 (555)
Q Consensus       159 ~ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGN  238 (555)
                      +||++|+||++++...+.++.++..+++||||||||+||||||++|+|++++++|++||||+||||||++++++++||||
T Consensus       310 ~ir~lL~GS~l~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGN  389 (706)
T PLN02457        310 IMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGN  389 (706)
T ss_pred             HHHHHhCcCccchhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCC
Confidence            99999999999876544444455567899999999999999999999999999999999999999999998889999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccc
Q 037382          239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH  318 (555)
Q Consensus       239 F~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~  318 (555)
                      |||+||+++||++++|++++|+++|||+++|+||.+|+|||+||+++++||++||||++||++|||++||++||||+|+|
T Consensus       390 F~g~~va~amD~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~  469 (706)
T PLN02457        390 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNH  469 (706)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccC
Confidence            99999999999999999999999999999999999999999999976689999999999999999999999999999999


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 037382          319 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPS  398 (555)
Q Consensus       319 ~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~d  398 (555)
                      ++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||.++++|++.++.+++++++++++.+.++.+.+.
T Consensus       470 ~~pt~~~nED~~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~  549 (706)
T PLN02457        470 VQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPS  549 (706)
T ss_pred             cccccCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999988899999999999999999998888999999


Q ss_pred             cCCHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHH
Q 037382          399 RFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ  478 (555)
Q Consensus       399 r~~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~  478 (555)
                      ||+++|+.+++++.++|+|.+|+|+.+|++|++++++|+||+++++..+++..+++|++|..|+++++++|+++|+++|+
T Consensus       550 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~  629 (706)
T PLN02457        550 RFCEKDLLKVVDREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAARE  629 (706)
T ss_pred             ccCHHHHHHHHhhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998877777777899999999999999999999999999


Q ss_pred             HhhcCCCCCCccccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 037382          479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC  555 (555)
Q Consensus       479 a~~~g~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~~~~~~p~~~~  555 (555)
                      +|++|+.+++++|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+|++|||+||++|+|.|+|||
T Consensus       630 ~~~~~~~~~~~ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~  706 (706)
T PLN02457        630 AYENGTAPIPNRIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC  706 (706)
T ss_pred             HHhcCCccccchhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence            99999998999999999999999999999999999999999999999999999999999999999999999999998

>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase Back     alignment and domain information
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01225 hutH histidine ammonia-lyase Back     alignment and domain information
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase Back     alignment and domain information
>PRK09367 histidine ammonia-lyase; Provisional Back     alignment and domain information
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4 Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1w27_A714 Phenylalanine Ammonia-Lyase (Pal) From Petroselinum 0.0
2yii_A705 Manipulating The Regioselectivity Of Phenylalanine 1e-143
4baa_A705 Redesign Of A Phenylalanine Aminomutase Into A Beta 1e-143
3nz4_A696 Crystal Structure Of A Taxus Phenylalanine Aminomut 1e-143
1y2m_A716 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 3e-80
1t6j_A714 Crystal Structure Of Phenylalanine Ammonia Lyase Fr 4e-77
2nyf_A567 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 3e-60
2nyn_A565 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 7e-58
3czo_A539 Crystal Structure Of Double Mutant Phenylalanine Am 9e-54
3unv_A547 Pantoea Agglomerans Phenylalanine Aminomutase Lengt 5e-44
2qve_A526 Crystal Structure Of Sgtam Bound To Mechanism Based 4e-43
2ohy_A539 X-Ray Crystal Structure Of Tyrosine Aminomutase Fro 5e-43
2rjr_A537 Substrate Mimic Bound To Sgtam Length = 537 5e-43
3kdz_A537 X-Ray Crystal Structure Of A Tyrosine Aminomutase M 5e-43
3kdy_A537 X-Ray Crystal Structure Of Tyrosine Aminomutase Mut 6e-43
2o6y_A521 Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides 6e-42
2o78_A521 Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides 7e-42
1gk3_A509 Histidine Ammonia-Lyase (Hal) Mutant D145a From Pse 5e-41
1gk2_A509 Histidine Ammonia-Lyase (Hal) Mutant F329g From Pse 8e-41
1gkm_A507 Histidine Ammonia-Lyase (Hal) From Pseudomonas Puti 9e-39
1gkj_A507 Histidine Ammonia-Lyase (Hal) Mutant Y280f From Pse 3e-38
1eb4_A507 Histidine Ammonia-Lyase (Hal) Mutant F329a From Pse 1e-37
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum Crispum Length = 714 Back     alignment and structure 
Iteration: 1

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/557 (85%), Positives = 519/557 (93%), Gaps = 4/557 (0%)
Query: 1   MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
           MLVR+NTLLQGYSGIRFEILEAITK LN +ITPCLPLRGTIT   DLVPLSYIAGLLTGR
Sbjct: 160 MLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITX--DLVPLSYIAGLLTGR 217
Query: 61  PNSKATGPNGETIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFDANNL 118
           PNSKA GP G  +  +EA K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLF+AN L
Sbjct: 218 PNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANIL 277
Query: 119 ALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHE 178
           A+L+E++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YVKAA+KLHE
Sbjct: 278 AVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHE 337
Query: 179 IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238
           +DPLQKPKQDRYALRTSPQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGN
Sbjct: 338 MDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGN 397
Query: 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 298
           FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE
Sbjct: 398 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 457
Query: 299 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVAL 358
           IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV L
Sbjct: 458 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGL 517
Query: 359 CQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYI 418
           CQAIDLRHLEENLK TVK+TVS VA++VLT+G NGELHPSRFCEKDLL+  DRE++FAYI
Sbjct: 518 CQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYI 577
Query: 419 DDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478
           DDPCSATYPLMQKLRQ LVEHAL NG+NE+N ++SIFQKIA FE+ELKA+LPKEVE+AR 
Sbjct: 578 DDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARA 637
Query: 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538
            +E+GNP IPNRI+ECRSYPLY+ VR+ELGT +LTGEKVTSPGEEF+KVF AM +G+IID
Sbjct: 638 ALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIID 697
Query: 539 PMLECLWEWNGAPLPIC 555
           P+LECL  WNGAPLPIC
Sbjct: 698 PLLECLESWNGAPLPIC 714
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine Aminomutase: New Insights Into The Reaction Mechanism Of Mio-dependent Enzymes From Structure-guided Directed Evolution Length = 705 Back     alignment and structure
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta- Phenylalanine Ammonia Lyase Length = 705 Back     alignment and structure
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase Length = 696 Back     alignment and structure
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Yeast Rhododporidium Toruloides Length = 716 Back     alignment and structure
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From Rhodosporidium Toruloides Length = 714 Back     alignment and structure
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Nostoc Punctiforme Length = 567 Back     alignment and structure
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Anabaena Variabilis Length = 565 Back     alignment and structure
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine Ammonia-Lyase From Anabaena Variabilis Length = 539 Back     alignment and structure
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase Length = 547 Back     alignment and structure
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based Inhibitor Length = 526 Back     alignment and structure
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From Streptomyces Globisporus Length = 539 Back     alignment and structure
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam Length = 537 Back     alignment and structure
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant Construct With Bound Ligand Length = 537 Back     alignment and structure
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant Construct Length = 537 Back     alignment and structure
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides Length = 521 Back     alignment and structure
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides (his89phe Variant) Complexed With Cinnamic Acid Length = 521 Back     alignment and structure
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From Pseudomonas Putida Length = 509 Back     alignment and structure
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From Pseudomonas Putida Length = 509 Back     alignment and structure
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida Inhibited With L-Cysteine Length = 507 Back     alignment and structure
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From Pseudomonas Putida Length = 507 Back     alignment and structure
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From Pseudomonas Putida Length = 507 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 0.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 0.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 0.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 1e-177
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 1e-173
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 1e-171
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 1e-151
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 1e-145
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Length = 714 Back     alignment and structure
 Score =  809 bits (2091), Expect = 0.0
 Identities = 476/557 (85%), Positives = 519/557 (93%), Gaps = 4/557 (0%)

Query: 1   MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
           MLVR+NTLLQGYSGIRFEILEAITK LN +ITPCLPLRGTI  + DLVPLSYIAGLLTGR
Sbjct: 160 MLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTI--TXDLVPLSYIAGLLTGR 217

Query: 61  PNSKATGPNGETIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFDANNL 118
           PNSKA GP G  +  +EA K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLF+AN L
Sbjct: 218 PNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANIL 277

Query: 119 ALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHE 178
           A+L+E++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YVKAA+KLHE
Sbjct: 278 AVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHE 337

Query: 179 IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238
           +DPLQKPKQDRYALRTSPQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGN
Sbjct: 338 MDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGN 397

Query: 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 298
           FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE
Sbjct: 398 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 457

Query: 299 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVAL 358
           IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV L
Sbjct: 458 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGL 517

Query: 359 CQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYI 418
           CQAIDLRHLEENLK TVK+TVS VA++VLT+G NGELHPSRFCEKDLL+  DRE++FAYI
Sbjct: 518 CQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYI 577

Query: 419 DDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478
           DDPCSATYPLMQKLRQ LVEHAL NG+NE+N ++SIFQKIA FE+ELKA+LPKEVE+AR 
Sbjct: 578 DDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARA 637

Query: 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538
            +E+GNP IPNRI+ECRSYPLY+ VR+ELGT +LTGEKVTSPGEEF+KVF AM +G+IID
Sbjct: 638 ALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIID 697

Query: 539 PMLECLWEWNGAPLPIC 555
           P+LECL  WNGAPLPIC
Sbjct: 698 PLLECLESWNGAPLPIC 714
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Length = 705 Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Length = 716 Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Length = 526 Back     alignment and structure
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Length = 547 Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Length = 521 Back     alignment and structure
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Length = 507 Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Length = 565 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 100.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 100.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 100.0
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 100.0
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 100.0
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 100.0
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 100.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 100.0
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Back     alignment and structure
Probab=100.00  E-value=5e-164  Score=1356.40  Aligned_cols=553  Identities=86%  Similarity=1.310  Sum_probs=534.8

Q ss_pred             CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382            1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK   80 (555)
Q Consensus         1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~   80 (555)
                      |++|+|+|++|||||||+++++|++|||+||+|+||++||||  |||+||||||++|+|||+++.++|+|+++|+.|||+
T Consensus       160 MllRlnsL~~G~SGVr~evve~L~~lLN~gi~P~VP~~GSVG--GDLaPLAhial~LiGeg~~~~v~~~G~~~~a~eAL~  237 (714)
T 1w27_A          160 MLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTIT--XDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFK  237 (714)
T ss_dssp             HHHHHHTTTTSCSCCCHHHHHHHHHHHHTTCEECCBSSCCCS--SCHHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHH
T ss_pred             HHHHHHHHccCCCCCCHHHHHHHHHHHhCCCccccCCCCCcc--ccchHHHHHHHHHhCCCcccccccCCccccHHHHHH
Confidence            799999999999999999999999999999999999999999  999999999999999999776789999999999999


Q ss_pred             hcCCC--CcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHH
Q 037382           81 QAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA  158 (555)
Q Consensus        81 ~~gl~--p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~  158 (555)
                      ++||+  |++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|++++|||++|++||||||+++|+
T Consensus       238 ~aGl~~~Pl~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~  317 (714)
T 1w27_A          238 LAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA  317 (714)
T ss_dssp             HHTCSSSCCCCCTTHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTTCCHHHHHHHH
T ss_pred             HcCCCCCCCCCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHHHhhCCChhHHHHHH
Confidence            99997  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCC
Q 037382          159 IMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN  238 (555)
Q Consensus       159 ~ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGN  238 (555)
                      +||++|+||+++....+.++.++.++++||||||||+||||||++|+|++++++|++||||+||||+||+++++++||||
T Consensus       318 ~ir~lL~gS~l~~~~~~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGN  397 (714)
T 1w27_A          318 IMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGN  397 (714)
T ss_dssp             HHHHHHHTCSSCCCCCSSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEECCCT
T ss_pred             HHHHHhCccchhhhcccccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceeeCCC
Confidence            99999999999876543334455567999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccc
Q 037382          239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH  318 (555)
Q Consensus       239 F~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~  318 (555)
                      |||+||+++||++++|++++|+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||++|||+||+|+|+|
T Consensus       398 Fhg~pvA~AmD~L~iAla~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~PaSvd  477 (714)
T 1w27_A          398 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH  477 (714)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSTTC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccC
Confidence            99999999999999999999999999999999999988999999976789999999999999999999999999999999


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 037382          319 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPS  398 (555)
Q Consensus       319 ~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~d  398 (555)
                      ++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||+++.++++.+++.+++++++++.++.++.+.+.
T Consensus       478 s~pts~~qEDhvSmg~~aArk~~~~venl~~vlAiELl~a~QAiDlR~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~  557 (714)
T 1w27_A          478 VQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPS  557 (714)
T ss_dssp             CCCBTTTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTTBCCSSC
T ss_pred             CccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHH
Q 037382          399 RFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ  478 (555)
Q Consensus       399 r~~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~  478 (555)
                      |++++|+.+++++.++|+|++|||+.+||+|+|++++|+||++++++.++...+++|++|..|+++++++|+++|+++|+
T Consensus       558 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~  637 (714)
T 1w27_A          558 RFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARA  637 (714)
T ss_dssp             HHHHHHHHHHHHHSCGGGTTTSTTCTTSHHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhhhHHHHhhcCcccccchHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988766666667778999999999999999999999999


Q ss_pred             HhhcCCCCCCccccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 037382          479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC  555 (555)
Q Consensus       479 a~~~g~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~~~~~~p~~~~  555 (555)
                      +|++|+.++|++|++|||||||+|||+|||||||+|++.+|||+||||||||||+|+|++|||+||++|+|.|+|||
T Consensus       638 ~f~~g~~~~~~~i~~~~s~~lY~fVR~~Lg~~~~~g~~~~~~g~~~~~i~~ai~~g~~~~~l~~~~~~~~~~~~~~~  714 (714)
T 1w27_A          638 ALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC  714 (714)
T ss_dssp             HHHTTCCSSCCGGGGSTTHHHHHHHHTTSCCCCCCTTSSCCHHHHHHHHHHHHHTTTTHHHHHHTTTTCCSSCCCCC
T ss_pred             HHhcCCcCccchhhcCCchhHHHHHHHHcCCCcccCCCCCCCchhHHHHHHHHHCCccHHHHHHHHhhhcCCCCCCC
Confidence            99999889999999999999999999999999999999999999999999999999999999999999999999998
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Back     alignment and structure
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Back     alignment and structure
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d1w27a_692 a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {P 0.0
d1t6ja_678 a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {F 0.0
d1gkma_509 a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseu 1e-117

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
d1w27a_692 Phenylalanine ammonia-lyase, PAL {Parsley (Petrose 100.0
d1t6ja_678 Phenylalanine ammonia-lyase, PAL {Fungi (Rhodospor 100.0
d1gkma_509 Histidine ammonia-lyase (HAL) {Pseudomonas putida 100.0