Citrus Sinensis ID: 037393
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 503 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKK7 | 477 | Xylose isomerase OS=Arabi | yes | no | 0.936 | 0.987 | 0.816 | 0.0 | |
| Q40082 | 479 | Xylose isomerase OS=Horde | N/A | no | 0.902 | 0.947 | 0.783 | 0.0 | |
| B9MPG8 | 438 | Xylose isomerase OS=Caldi | yes | no | 0.854 | 0.981 | 0.587 | 1e-149 | |
| P22842 | 438 | Xylose isomerase OS=Therm | yes | no | 0.860 | 0.988 | 0.559 | 1e-144 | |
| B0K1L3 | 438 | Xylose isomerase OS=Therm | yes | no | 0.860 | 0.988 | 0.559 | 1e-144 | |
| Q9KGU2 | 438 | Xylose isomerase OS=Therm | N/A | no | 0.860 | 0.988 | 0.559 | 1e-144 | |
| A5ILR5 | 444 | Xylose isomerase OS=Therm | yes | no | 0.860 | 0.975 | 0.573 | 1e-144 | |
| B9K7G3 | 444 | Xylose isomerase OS=Therm | yes | no | 0.862 | 0.977 | 0.565 | 1e-143 | |
| P45687 | 444 | Xylose isomerase OS=Therm | yes | no | 0.862 | 0.977 | 0.565 | 1e-143 | |
| B1LB08 | 444 | Xylose isomerase OS=Therm | yes | no | 0.860 | 0.975 | 0.569 | 1e-143 |
| >sp|Q9FKK7|XYLA_ARATH Xylose isomerase OS=Arabidopsis thaliana GN=XYLA PE=2 SV=2 | Back alignment and function desciption |
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Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/473 (81%), Positives = 429/473 (90%), Gaps = 2/473 (0%)
Query: 32 LLLLLLCLNLVSSLVIAGAPPTCAANLDSKCADSDEWKGEFFPGIPKIKYEGPSSKNHLA 91
+LLLC SSLV A PPTC A+L KC+DSD+W+G+FFP IPKIKYEGPSSKN LA
Sbjct: 6 FFMLLLCFIAASSLVSAD-PPTCPADLGGKCSDSDDWQGDFFPEIPKIKYEGPSSKNPLA 64
Query: 92 FKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRM 151
++WYN EE ILGKKMKDW RFSVAFWHTFRGTG DPFG TK WPWEDGTNS++MAKRRM
Sbjct: 65 YRWYNAEEEILGKKMKDWFRFSVAFWHTFRGTGGDPFGAATKYWPWEDGTNSVSMAKRRM 124
Query: 152 RANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQ 210
RANFEF+ KLGVD+WCFHDRDIAPDG TL+E+N NLDEV+ LAKELQ G+K++PLWGTAQ
Sbjct: 125 RANFEFLKKLGVDWWCFHDRDIAPDGTTLEESNKNLDEVIELAKELQKGSKIKPLWGTAQ 184
Query: 211 LFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMG 270
LF HPRYMHG ATSSEV VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQ+LLNTDMG
Sbjct: 185 LFLHPRYMHGGATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDMG 244
Query: 271 REIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDF 330
RE+DH+A FFE+A AYKKKIGFKG LLIEPKPQEPTKHQYDWDAATAANFLRKYGLI++F
Sbjct: 245 RELDHLARFFEAAVAYKKKIGFKGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEF 304
Query: 331 KLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIML 390
KLNIECNHATLSGH+CHH++ETAR+NGLLGNIDANTGD Q GWDTDQFLTD+GEAT +M+
Sbjct: 305 KLNIECNHATLSGHTCHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDVGEATMVMM 364
Query: 391 SVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELV 450
SVIKNGG+APGGFNFDAKLRRESTDVEDLFIAHI GMDT+ARGLR A K++E+GSL ELV
Sbjct: 365 SVIKNGGIAPGGFNFDAKLRRESTDVEDLFIAHISGMDTMARGLRNAVKILEEGSLSELV 424
Query: 451 RKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503
RKRY ++DSE+G++IE GKADFE LEKKA E+GEPKV SAKQELAEMIFQSA+
Sbjct: 425 RKRYATWDSELGKQIEEGKADFEYLEKKAKEFGEPKVSSAKQELAEMIFQSAM 477
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Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 5 |
| >sp|Q40082|XYLA_HORVU Xylose isomerase OS=Hordeum vulgare GN=XYLA PE=1 SV=1 | Back alignment and function description |
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| >sp|B9MPG8|XYLA_CALBD Xylose isomerase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=xylA PE=3 SV=1 | Back alignment and function description |
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| >sp|P22842|XYLA_THEP3 Xylose isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=xylA PE=3 SV=1 | Back alignment and function description |
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| >sp|B0K1L3|XYLA_THEPX Xylose isomerase OS=Thermoanaerobacter sp. (strain X514) GN=xylA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9KGU2|XYLA_THEYO Xylose isomerase OS=Thermoanaerobacter yonseii GN=xylA PE=3 SV=1 | Back alignment and function description |
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| >sp|A5ILR5|XYLA_THEP1 Xylose isomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=xylA PE=3 SV=1 | Back alignment and function description |
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| >sp|B9K7G3|XYLA_THENN Xylose isomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=xylA PE=3 SV=1 | Back alignment and function description |
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| >sp|P45687|XYLA_THENE Xylose isomerase OS=Thermotoga neapolitana GN=xylA PE=1 SV=1 | Back alignment and function description |
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| >sp|B1LB08|XYLA_THESQ Xylose isomerase OS=Thermotoga sp. (strain RQ2) GN=xylA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 503 | ||||||
| 255583291 | 477 | Xylose isomerase, putative [Ricinus comm | 0.922 | 0.972 | 0.862 | 0.0 | |
| 297735328 | 526 | unnamed protein product [Vitis vinifera] | 0.956 | 0.914 | 0.848 | 0.0 | |
| 224142283 | 477 | predicted protein [Populus trichocarpa] | 0.938 | 0.989 | 0.834 | 0.0 | |
| 359485034 | 478 | PREDICTED: xylose isomerase-like [Vitis | 0.938 | 0.987 | 0.858 | 0.0 | |
| 297793277 | 477 | xylose isomerase family protein [Arabido | 0.936 | 0.987 | 0.813 | 0.0 | |
| 147787652 | 462 | hypothetical protein VITISV_037086 [Viti | 0.908 | 0.989 | 0.864 | 0.0 | |
| 30696904 | 477 | xylose isomerase [Arabidopsis thaliana] | 0.936 | 0.987 | 0.816 | 0.0 | |
| 356562473 | 480 | PREDICTED: xylose isomerase-like [Glycin | 0.910 | 0.954 | 0.849 | 0.0 | |
| 110740789 | 477 | xylose isomerase [Arabidopsis thaliana] | 0.936 | 0.987 | 0.813 | 0.0 | |
| 449462683 | 476 | PREDICTED: xylose isomerase-like [Cucumi | 0.896 | 0.947 | 0.838 | 0.0 |
| >gi|255583291|ref|XP_002532409.1| Xylose isomerase, putative [Ricinus communis] gi|223527883|gb|EEF29973.1| Xylose isomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/464 (86%), Positives = 434/464 (93%)
Query: 40 NLVSSLVIAGAPPTCAANLDSKCADSDEWKGEFFPGIPKIKYEGPSSKNHLAFKWYNPEE 99
N V+S VIA PPTC A+L KCADSDEWKGEFFPGIPKIKYEGPSSKN LA+KWYN EE
Sbjct: 14 NTVTSGVIAAGPPTCPADLGGKCADSDEWKGEFFPGIPKIKYEGPSSKNPLAYKWYNAEE 73
Query: 100 VILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFID 159
ILGKKMKDWMRFS+AFWHTFRGTG+DPFG PTK WPWEDGT+S+AMAKRRMRANFE +D
Sbjct: 74 EILGKKMKDWMRFSIAFWHTFRGTGADPFGAPTKYWPWEDGTDSLAMAKRRMRANFELLD 133
Query: 160 KLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMH 219
KLGVD WCFHDRDIAP G+T++E+NANLDEVVALAKELQGTK+ PLWGTAQLF HPRYMH
Sbjct: 134 KLGVDRWCFHDRDIAPAGKTIEESNANLDEVVALAKELQGTKILPLWGTAQLFLHPRYMH 193
Query: 220 GAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANF 279
GAATSS+V VYAYAAAQVKKA+EVTHYLGGENYVFWGGREGYQSLLNTDM RE+DHMA F
Sbjct: 194 GAATSSDVGVYAYAAAQVKKAIEVTHYLGGENYVFWGGREGYQSLLNTDMERELDHMARF 253
Query: 280 FESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHA 339
E+A AYKKKIGF G LLIEPKPQEPTKHQYDWDAATAANFLRKYGLI++FKLNIECNHA
Sbjct: 254 MEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHA 313
Query: 340 TLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLA 399
TLSGHSCHH++ETAR+NGLLGNIDANTGDPQ+GWDTDQF+TDI EAT +M+SVI+NGGLA
Sbjct: 314 TLSGHSCHHELETARINGLLGNIDANTGDPQIGWDTDQFMTDIAEATLVMMSVIRNGGLA 373
Query: 400 PGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDS 459
PGGFNFDAKLRRESTDVED+FIAHI GMDT+ARGLR AAKLIEDGSL ELVRKRY+SFD+
Sbjct: 374 PGGFNFDAKLRRESTDVEDIFIAHIGGMDTLARGLRNAAKLIEDGSLAELVRKRYESFDT 433
Query: 460 EIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503
EIG +IEAGKADFEMLEKKA+EWGEPKVPSAKQELAEMIFQSA+
Sbjct: 434 EIGAQIEAGKADFEMLEKKAIEWGEPKVPSAKQELAEMIFQSAL 477
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735328|emb|CBI17768.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224142283|ref|XP_002324488.1| predicted protein [Populus trichocarpa] gi|222865922|gb|EEF03053.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359485034|ref|XP_002277520.2| PREDICTED: xylose isomerase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297793277|ref|XP_002864523.1| xylose isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310358|gb|EFH40782.1| xylose isomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|147787652|emb|CAN65150.1| hypothetical protein VITISV_037086 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|30696904|ref|NP_568861.3| xylose isomerase [Arabidopsis thaliana] gi|148877250|sp|Q9FKK7.2|XYLA_ARATH RecName: Full=Xylose isomerase gi|22531261|gb|AAM97134.1| expressed protein; supported by full length cDNA: Ceres: 122798 [Arabidopsis thaliana] gi|30387571|gb|AAP31951.1| At5g57655 [Arabidopsis thaliana] gi|332009549|gb|AED96932.1| xylose isomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356562473|ref|XP_003549495.1| PREDICTED: xylose isomerase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|110740789|dbj|BAE98492.1| xylose isomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449462683|ref|XP_004149070.1| PREDICTED: xylose isomerase-like [Cucumis sativus] gi|449519533|ref|XP_004166789.1| PREDICTED: xylose isomerase-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 503 | ||||||
| TAIR|locus:505006696 | 477 | AT5G57655 [Arabidopsis thalian | 0.908 | 0.958 | 0.783 | 1.8e-206 | |
| UNIPROTKB|P00944 | 440 | xylA "XylA" [Escherichia coli | 0.844 | 0.965 | 0.482 | 1e-109 | |
| TIGR_CMR|SPO_0856 | 434 | SPO_0856 "xylose isomerase" [R | 0.836 | 0.970 | 0.479 | 9.2e-107 | |
| UNIPROTKB|Q48J73 | 438 | xylA "Xylose isomerase" [Pseud | 0.844 | 0.970 | 0.440 | 1.1e-101 |
| TAIR|locus:505006696 AT5G57655 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1997 (708.0 bits), Expect = 1.8e-206, P = 1.8e-206
Identities = 359/458 (78%), Positives = 403/458 (87%)
Query: 47 IAGAPPTCAANLDSKCADSDEWKGEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKM 106
++ PPTC A+L KC+DSD+W+G+FFP IPKIKYEGPSSKN LA++WYN EE ILGKKM
Sbjct: 20 VSADPPTCPADLGGKCSDSDDWQGDFFPEIPKIKYEGPSSKNPLAYRWYNAEEEILGKKM 79
Query: 107 KDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFW 166
KDW RFSVAFWHTFRGTG DPFG TK WPWEDGTNS++MAKRRMRANFEF+ KLGVD+W
Sbjct: 80 KDWFRFSVAFWHTFRGTGGDPFGAATKYWPWEDGTNSVSMAKRRMRANFEFLKKLGVDWW 139
Query: 167 CFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGXXXXX 225
CFHDRDIAPDG TL+E+N NLDEV+ LAKELQ G+K++PLWGTAQLF HPRYMHG
Sbjct: 140 CFHDRDIAPDGTTLEESNKNLDEVIELAKELQKGSKIKPLWGTAQLFLHPRYMHGGATSS 199
Query: 226 XXXXXXXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAA 285
MEVTHYLGGENYVFWGGREGYQ+LLNTDMGRE+DH+A FFE+A A
Sbjct: 200 EVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDMGRELDHLARFFEAAVA 259
Query: 286 YKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHS 345
YKKKIGFKG LLIEPKPQEPTKHQYDWDAATAANFLRKYGLI++FKLNIECNHATLSGH+
Sbjct: 260 YKKKIGFKGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGHT 319
Query: 346 CHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 405
CHH++ETAR+NGLLGNIDANTGD Q GWDTDQFLTD+GEAT +M+SVIKNGG+APGGFNF
Sbjct: 320 CHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDVGEATMVMMSVIKNGGIAPGGFNF 379
Query: 406 DAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKI 465
DAKLRRESTDVEDLFIAHI GMDT+ARGLR A K++E+GSL ELVRKRY ++DSE+G++I
Sbjct: 380 DAKLRRESTDVEDLFIAHISGMDTMARGLRNAVKILEEGSLSELVRKRYATWDSELGKQI 439
Query: 466 EAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503
E GKADFE LEKKA E+GEPKV SAKQELAEMIFQSA+
Sbjct: 440 EEGKADFEYLEKKAKEFGEPKVSSAKQELAEMIFQSAM 477
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| UNIPROTKB|P00944 xylA "XylA" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_0856 SPO_0856 "xylose isomerase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q48J73 xylA "Xylose isomerase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8P9T9 | XYLA1_XANCP | 5, ., 3, ., 1, ., 5 | 0.5431 | 0.8508 | 0.9596 | yes | no |
| P19148 | XYLA_THETU | 5, ., 3, ., 1, ., 5 | 0.5529 | 0.8608 | 0.9863 | N/A | no |
| Q3BMF2 | XYLA_XANC5 | 5, ., 3, ., 1, ., 5 | 0.5454 | 0.8489 | 0.9595 | yes | no |
| O82845 | XYLA_TETHA | 5, ., 3, ., 1, ., 5 | 0.5255 | 0.8131 | 0.9402 | yes | no |
| Q739D2 | XYLA_BACC1 | 5, ., 3, ., 1, ., 5 | 0.5124 | 0.8767 | 0.9910 | yes | no |
| Q4UTU6 | XYLA1_XANC8 | 5, ., 3, ., 1, ., 5 | 0.5431 | 0.8508 | 0.9596 | yes | no |
| Q8PLL9 | XYLA1_XANAC | 5, ., 3, ., 1, ., 5 | 0.5361 | 0.8489 | 0.9682 | yes | no |
| A6L792 | XYLA_BACV8 | 5, ., 3, ., 1, ., 5 | 0.5361 | 0.8508 | 0.9771 | yes | no |
| P54272 | XYLA_BACSW | 5, ., 3, ., 1, ., 5 | 0.5508 | 0.8369 | 0.9546 | N/A | no |
| Q8P3H1 | XYLA2_XANCP | 5, ., 3, ., 1, ., 5 | 0.5454 | 0.8508 | 0.9596 | yes | no |
| B0K1L3 | XYLA_THEPX | 5, ., 3, ., 1, ., 5 | 0.5599 | 0.8608 | 0.9885 | yes | no |
| Q9S306 | XYLA_RUMFL | 5, ., 3, ., 1, ., 5 | 0.5333 | 0.8588 | 0.9863 | N/A | no |
| A4IP67 | XYLA_GEOTN | 5, ., 3, ., 1, ., 5 | 0.5555 | 0.8369 | 0.9460 | yes | no |
| P0CI80 | XYLA_BACSU | 5, ., 3, ., 1, ., 5 | 0.5219 | 0.8568 | 0.9685 | yes | no |
| A7Z522 | XYLA_BACA2 | 5, ., 3, ., 1, ., 5 | 0.5334 | 0.8568 | 0.9685 | yes | no |
| Q4UNZ4 | XYLA2_XANC8 | 5, ., 3, ., 1, ., 5 | 0.5454 | 0.8508 | 0.9596 | yes | no |
| Q40082 | XYLA_HORVU | 5, ., 3, ., 1, ., 5 | 0.7833 | 0.9025 | 0.9478 | N/A | no |
| Q8A9M2 | XYLA_BACTN | 5, ., 3, ., 1, ., 5 | 0.5395 | 0.8528 | 0.9794 | yes | no |
| Q5WKJ3 | XYLA_BACSK | 5, ., 3, ., 1, ., 5 | 0.5163 | 0.8469 | 0.9703 | yes | no |
| Q5LCV9 | XYLA_BACFN | 5, ., 3, ., 1, ., 5 | 0.5198 | 0.8508 | 0.9749 | yes | no |
| B9MPG8 | XYLA_CALBD | 5, ., 3, ., 1, ., 5 | 0.5870 | 0.8548 | 0.9817 | yes | no |
| A5ILR5 | XYLA_THEP1 | 5, ., 3, ., 1, ., 5 | 0.5737 | 0.8608 | 0.9752 | yes | no |
| Q7C3R3 | XYLA_ENTFA | 5, ., 3, ., 1, ., 5 | 0.5264 | 0.8528 | 0.9862 | yes | no |
| Q6DB05 | XYLA_ERWCT | 5, ., 3, ., 1, ., 5 | 0.5128 | 0.8489 | 0.9726 | yes | no |
| C6DIH5 | XYLA_PECCP | 5, ., 3, ., 1, ., 5 | 0.5174 | 0.8489 | 0.9704 | yes | no |
| P29441 | XYLA_THETC | 5, ., 3, ., 1, ., 5 | 0.5576 | 0.8608 | 0.9863 | yes | no |
| Q9KGU2 | XYLA_THEYO | 5, ., 3, ., 1, ., 5 | 0.5599 | 0.8608 | 0.9885 | N/A | no |
| Q7UVG2 | XYLA_RHOBA | 5, ., 3, ., 1, ., 5 | 0.5681 | 0.8568 | 0.9817 | yes | no |
| Q6T6K9 | XYLA_FERGO | 5, ., 3, ., 1, ., 5 | 0.5314 | 0.8429 | 0.9792 | N/A | no |
| A8FE33 | XYLA_BACP2 | 5, ., 3, ., 1, ., 5 | 0.5357 | 0.8310 | 0.9393 | yes | no |
| P77832 | XYLA_BACLD | 5, ., 3, ., 1, ., 5 | 0.5153 | 0.8389 | 0.9419 | yes | no |
| Q8PEW5 | XYLA2_XANAC | 5, ., 3, ., 1, ., 5 | 0.5407 | 0.8489 | 0.9595 | yes | no |
| E0TVS5 | XYLA_BACPZ | 5, ., 3, ., 1, ., 5 | 0.5124 | 0.8767 | 0.9910 | yes | no |
| Q2NXR2 | XYLA_XANOM | 5, ., 3, ., 1, ., 5 | 0.5359 | 0.8528 | 0.9640 | yes | no |
| Q5GYQ7 | XYLA1_XANOR | 5, ., 3, ., 1, ., 5 | 0.5359 | 0.8528 | 0.9640 | yes | no |
| P54273 | XYLA_GEOSE | 5, ., 3, ., 1, ., 5 | 0.5531 | 0.8369 | 0.9546 | N/A | no |
| Q5GUF2 | XYLA2_XANOR | 5, ., 3, ., 1, ., 5 | 0.5359 | 0.8528 | 0.9640 | yes | no |
| B9K7G3 | XYLA_THENN | 5, ., 3, ., 1, ., 5 | 0.5655 | 0.8628 | 0.9774 | yes | no |
| Q5KYS6 | XYLA_GEOKA | 5, ., 3, ., 1, ., 5 | 0.5460 | 0.8369 | 0.9460 | yes | no |
| P22842 | XYLA_THEP3 | 5, ., 3, ., 1, ., 5 | 0.5599 | 0.8608 | 0.9885 | yes | no |
| Q9X1Z5 | XYLA_THEMA | 5, ., 3, ., 1, ., 5 | 0.5655 | 0.8628 | 0.9774 | yes | no |
| O08325 | XYLA_BACMD | 5, ., 3, ., 1, ., 5 | 0.5277 | 0.8548 | 0.9662 | yes | no |
| Q64U20 | XYLA_BACFR | 5, ., 3, ., 1, ., 5 | 0.5198 | 0.8508 | 0.9749 | yes | no |
| Q8ELU7 | XYLA_OCEIH | 5, ., 3, ., 1, ., 5 | 0.5212 | 0.8389 | 0.9612 | yes | no |
| B1LB08 | XYLA_THESQ | 5, ., 3, ., 1, ., 5 | 0.5691 | 0.8608 | 0.9752 | yes | no |
| A0AF79 | XYLA_LISW6 | 5, ., 3, ., 1, ., 5 | 0.5243 | 0.8111 | 0.9379 | yes | no |
| Q9K993 | XYLA_BACHD | 5, ., 3, ., 1, ., 5 | 0.5342 | 0.8369 | 0.9568 | yes | no |
| Q9FKK7 | XYLA_ARATH | 5, ., 3, ., 1, ., 5 | 0.8160 | 0.9363 | 0.9874 | yes | no |
| P30435 | XYLA_THESA | 5, ., 3, ., 1, ., 5 | 0.5576 | 0.8608 | 0.9863 | yes | no |
| P45687 | XYLA_THENE | 5, ., 3, ., 1, ., 5 | 0.5655 | 0.8628 | 0.9774 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.3.1 | 0.983 |
| 3rd Layer | 5.3.1.5 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||
 | estExt_Genewise1_v1.C_LG_XVIII2895 | xylose isomerase (EC-5.3.1.5) (477 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | grail3.0048004901 | • | • | • | • | • | 0.956 | ||||
 | gw1.XII.1035.1 | • | • | 0.919 | |||||||
 | estExt_fgenesh4_pg.C_LG_XII1187 | • | • | 0.919 | |||||||
 | gw1.II.2365.1 | • | 0.899 | ||||||||
 | gw1.8434.3.1 | • | 0.899 | ||||||||
 | gw1.125.171.1 | • | 0.899 | ||||||||
 | fgenesh4_pm.C_LG_IV000247 | • | 0.899 | ||||||||
 | fgenesh4_pm.C_LG_I000617 | • | 0.899 | ||||||||
 | fgenesh4_pg.C_LG_VII001238 | • | 0.899 | ||||||||
 | fgenesh4_pg.C_LG_IX001086 | • | 0.899 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 503 | |||
| PLN02923 | 478 | PLN02923, PLN02923, xylose isomerase | 0.0 | |
| TIGR02630 | 434 | TIGR02630, xylose_isom_A, xylose isomerase | 0.0 | |
| PRK05474 | 437 | PRK05474, PRK05474, xylose isomerase; Provisional | 0.0 | |
| COG2115 | 438 | COG2115, XylA, Xylose isomerase [Carbohydrate tran | 0.0 | |
| PRK12465 | 445 | PRK12465, PRK12465, xylose isomerase; Provisional | 1e-167 | |
| TIGR02631 | 382 | TIGR02631, xylA_Arthro, xylose isomerase, Arthroba | 2e-24 | |
| PRK12677 | 384 | PRK12677, PRK12677, xylose isomerase; Provisional | 5e-22 | |
| pfam01261 | 202 | pfam01261, AP_endonuc_2, Xylose isomerase-like TIM | 5e-07 |
| >gnl|CDD|178511 PLN02923, PLN02923, xylose isomerase | Back alignment and domain information |
|---|
Score = 970 bits (2508), Expect = 0.0
Identities = 412/479 (86%), Positives = 440/479 (91%), Gaps = 2/479 (0%)
Query: 26 MEAQKILLLLLLCLNLVSSLVIAGAPPTCAANLDSKCADSDEWKGEFFPGIPKIKYEGPS 85
M+ ILLLLL C L S VIA PPTC A+L SKC+DSDEW+GEFFPGIPKIKYEGPS
Sbjct: 1 MKGGSILLLLL-CALLCLSGVIAAQPPTCPADLGSKCSDSDEWEGEFFPGIPKIKYEGPS 59
Query: 86 SKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMA 145
SKN LA+KWYN EE ILGKKMKDWMRFSVAFWHTFRGTG DPFG PTK WPWEDGTNS+A
Sbjct: 60 SKNPLAYKWYNAEEEILGKKMKDWMRFSVAFWHTFRGTGGDPFGAPTKYWPWEDGTNSLA 119
Query: 146 MAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRP 204
MAKRRMRANFEF+ KLGVD WCFHDRDIAPDG+TL+E+NANLDEVVALAKELQ GTK+RP
Sbjct: 120 MAKRRMRANFEFLKKLGVDRWCFHDRDIAPDGKTLEESNANLDEVVALAKELQEGTKIRP 179
Query: 205 LWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSL 264
LWGTAQLF HPRYMHGAATSSEV VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQ+L
Sbjct: 180 LWGTAQLFKHPRYMHGAATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTL 239
Query: 265 LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKY 324
LNTDM RE+DH+A F E+A AYKKKIGF G LLIEPKPQEPTKHQYDWDAATAANFLRKY
Sbjct: 240 LNTDMERELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATAANFLRKY 299
Query: 325 GLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGE 384
GLI++FKLNIECNHATLSGHSCHH++ETAR+NGLLGNIDANTGD Q GWDTDQFLTDI E
Sbjct: 300 GLIDEFKLNIECNHATLSGHSCHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDIAE 359
Query: 385 ATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 444
AT +MLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHI GMDT+ARGLR AAKL+E+G
Sbjct: 360 ATMVMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHISGMDTMARGLRNAAKLLEEG 419
Query: 445 SLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503
SLPELVRKRY SFDSE+G +IEAGKADFE LEKKA+EWGEPKVPSAKQELAEMIFQSA+
Sbjct: 420 SLPELVRKRYASFDSELGAQIEAGKADFEELEKKALEWGEPKVPSAKQELAEMIFQSAL 478
|
Length = 478 |
| >gnl|CDD|233956 TIGR02630, xylose_isom_A, xylose isomerase | Back alignment and domain information |
|---|
| >gnl|CDD|235487 PRK05474, PRK05474, xylose isomerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225026 COG2115, XylA, Xylose isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|183542 PRK12465, PRK12465, xylose isomerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|131679 TIGR02631, xylA_Arthro, xylose isomerase, Arthrobacter type | Back alignment and domain information |
|---|
| >gnl|CDD|237170 PRK12677, PRK12677, xylose isomerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 503 | |||
| PLN02923 | 478 | xylose isomerase | 100.0 | |
| PRK12465 | 445 | xylose isomerase; Provisional | 100.0 | |
| COG2115 | 438 | XylA Xylose isomerase [Carbohydrate transport and | 100.0 | |
| TIGR02630 | 434 | xylose_isom_A xylose isomerase. Members of this fa | 100.0 | |
| PRK05474 | 437 | xylose isomerase; Provisional | 100.0 | |
| PRK12677 | 384 | xylose isomerase; Provisional | 100.0 | |
| TIGR02631 | 382 | xylA_Arthro xylose isomerase, Arthrobacter type. T | 100.0 | |
| TIGR02629 | 412 | L_rham_iso_rhiz L-rhamnose catabolism isomerase, P | 100.0 | |
| TIGR02635 | 378 | RhaI_grampos L-rhamnose isomerase, Streptomyces su | 100.0 | |
| COG4952 | 430 | Predicted sugar isomerase [Cell envelope biogenesi | 100.0 | |
| PRK01076 | 419 | L-rhamnose isomerase; Provisional | 99.97 | |
| TIGR01748 | 414 | rhaA L-rhamnose isomerase. This enzyme interconver | 99.97 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 99.83 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 99.82 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 99.82 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 99.81 | |
| PF06134 | 417 | RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR00 | 99.81 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 99.8 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 99.8 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 99.79 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 99.76 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 99.69 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 99.67 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 99.62 | |
| TIGR00587 | 274 | nfo apurinic endonuclease (APN1). All proteins in | 99.59 | |
| COG1082 | 274 | IolE Sugar phosphate isomerases/epimerases [Carboh | 99.53 | |
| PTZ00372 | 413 | endonuclease 4-like protein; Provisional | 99.27 | |
| PRK03906 | 385 | mannonate dehydratase; Provisional | 99.27 | |
| PRK02308 | 303 | uvsE putative UV damage endonuclease; Provisional | 98.83 | |
| COG3622 | 260 | Hfi Hydroxypyruvate isomerase [Carbohydrate transp | 98.74 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 98.69 | |
| TIGR00695 | 394 | uxuA mannonate dehydratase. This Fe2+-requiring en | 98.64 | |
| COG0648 | 280 | Nfo Endonuclease IV [DNA replication, recombinatio | 98.47 | |
| COG4806 | 419 | RhaA L-rhamnose isomerase [Carbohydrate transport | 97.98 | |
| TIGR00629 | 312 | uvde UV damage endonuclease UvdE. This family is b | 97.33 | |
| COG4130 | 272 | Predicted sugar epimerase [Carbohydrate transport | 97.04 | |
| KOG3997 | 281 | consensus Major apurinic/apyrimidinic endonuclease | 96.69 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 96.13 | |
| PF03851 | 275 | UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Sc | 95.8 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 94.75 | |
| TIGR03356 | 427 | BGL beta-galactosidase. | 93.59 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 92.84 | |
| KOG4518 | 264 | consensus Hydroxypyruvate isomerase [Carbohydrate | 91.93 | |
| TIGR01233 | 467 | lacG 6-phospho-beta-galactosidase. This enzyme is | 89.52 | |
| PF06230 | 214 | DUF1009: Protein of unknown function (DUF1009); In | 88.05 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 86.63 | |
| PLN02849 | 503 | beta-glucosidase | 86.2 | |
| KOG0622 | 448 | consensus Ornithine decarboxylase [Amino acid tran | 83.9 | |
| PRK09852 | 474 | cryptic 6-phospho-beta-glucosidase; Provisional | 83.18 | |
| PRK09593 | 478 | arb 6-phospho-beta-glucosidase; Reviewed | 82.9 | |
| PRK09589 | 476 | celA 6-phospho-beta-glucosidase; Reviewed | 81.14 | |
| PF03786 | 351 | UxuA: D-mannonate dehydratase (UxuA); InterPro: IP | 80.74 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 80.57 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 80.49 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 80.3 |
| >PLN02923 xylose isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-178 Score=1365.36 Aligned_cols=477 Identities=86% Similarity=1.392 Sum_probs=471.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccCccCCccccccccCCCCCcccccCCCCCCCccccccCccchhcCCc
Q 037393 26 MEAQKILLLLLLCLNLVSSLVIAGAPPTCAANLDSKCADSDEWKGEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKK 105 (503)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~ 105 (503)
||++. |+++|||.++|+++..+++|++||++++.+|++.++|+++||++|+||+||||+|+||||||||||+|+|+|||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~yF~~i~kI~yeG~~s~nplaf~~Ynp~evv~GK~ 79 (478)
T PLN02923 1 MKGGS-ILLLLLCALLCLSGVIAAQPPTCPADLGSKCSDSDEWEGEFFPGIPKIKYEGPSSKNPLAYKWYNAEEEILGKK 79 (478)
T ss_pred CCcch-hhHHHHHHHHHHHHHHhcCCCCCchhhcccccccHHHHHHhcCCCCceeeeCCCCCCCccccccCchhhcCCcc
Confidence 67777 88888999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHH
Q 037393 106 MKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANA 185 (503)
Q Consensus 106 m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~ 185 (503)
|+|||||||||||||||+|+||||+||+.|||+..+|||++|++|+++|||+|+|||++||||||+|++|+|+|++|+++
T Consensus 80 M~ehlRFav~yWHTf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~~y~cFHD~Dl~Peg~sl~E~~~ 159 (478)
T PLN02923 80 MKDWMRFSVAFWHTFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGVDRWCFHDRDIAPDGKTLEESNA 159 (478)
T ss_pred HHHhhhhhheeeeecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCeEccCccccCCCCCCHHHHHh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCC
Q 037393 186 NLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSL 264 (503)
Q Consensus 186 nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~ 264 (503)
||++||+++++++ +|||||+|+|+|||+|||||+||+|||||+||++|++|||+|||++++|||++||||||||||+|+
T Consensus 160 nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~GAaTspd~dV~ayAaaqvk~ald~t~eLGgenYVfWGGREGyetl 239 (478)
T PLN02923 160 NLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMHGAATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTL 239 (478)
T ss_pred hHHHHHHHHHHHhHhhCceeeeeccccccCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCccchhhh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCC
Q 037393 265 LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGH 344 (503)
Q Consensus 265 ~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~ 344 (503)
+|||++++++|++++|+|+++|+++|||+++|+|||||+|||+|||+||++|+|+||+++|+++.||||||+||++||||
T Consensus 240 lntD~k~e~d~~a~fl~ma~dY~~~iGf~g~flIEPKP~EPtkHqYd~d~at~laFL~~~gl~~~fklNiE~nHatLAGh 319 (478)
T PLN02923 240 LNTDMERELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGH 319 (478)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCCccCccHHHHHHHHHHhCChhhcccccchhhHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHH
Q 037393 345 SCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHI 424 (503)
Q Consensus 345 n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i 424 (503)
||+|++++|+++|+|||||+|+||+|+||||||||+|+++++++||+||++||+++||+|||+|+||+|+|+||+|++||
T Consensus 320 tf~Hela~A~~~G~LgSIDaN~GD~q~GwdtDQfp~d~~e~t~~m~eiL~~GG~~~Gg~nFDaK~rR~S~d~eDlf~aHI 399 (478)
T PLN02923 320 SCHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDIAEATMVMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHI 399 (478)
T ss_pred CcHHHHHHHHHcCCeeeeeCCCCCcccCcccccCCccHHHHHHHHHHHHHhCCCCCCCCCcCCCCCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcCCCCHHHHHHHHHHhCCCCCCCchhHHHHHHhhhcC
Q 037393 425 VGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 425 ~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g~~~~~~l~~~a~~~~~~~~~sg~qe~~e~~~n~~~ 503 (503)
++||+|||+|++|++|+++|.|++++++||+||++|+|++|++|++||++|++||+++++|+++|||||+||++||+||
T Consensus 400 ~gMD~~A~gl~~Aa~l~ed~~l~~~~~~RYas~~~g~G~~i~~G~~~l~~l~~~a~~~~~~~~~SGrqE~le~~~N~y~ 478 (478)
T PLN02923 400 SGMDTMARGLRNAAKLLEEGSLPELVRKRYASFDSELGAQIEAGKADFEELEKKALEWGEPKVPSAKQELAEMIFQSAL 478 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHhccccchhchHHHcCcCCHHHHHHHHHhcCCCCCCcchHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
|
|
| >PRK12465 xylose isomerase; Provisional | Back alignment and domain information |
|---|
| >COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02630 xylose_isom_A xylose isomerase | Back alignment and domain information |
|---|
| >PRK05474 xylose isomerase; Provisional | Back alignment and domain information |
|---|
| >PRK12677 xylose isomerase; Provisional | Back alignment and domain information |
|---|
| >TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type | Back alignment and domain information |
|---|
| >TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype | Back alignment and domain information |
|---|
| >TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype | Back alignment and domain information |
|---|
| >COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK01076 L-rhamnose isomerase; Provisional | Back alignment and domain information |
|---|
| >TIGR01748 rhaA L-rhamnose isomerase | Back alignment and domain information |
|---|
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5 | Back alignment and domain information |
|---|
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
| >TIGR00587 nfo apurinic endonuclease (APN1) | Back alignment and domain information |
|---|
| >COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PTZ00372 endonuclease 4-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK03906 mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK02308 uvsE putative UV damage endonuclease; Provisional | Back alignment and domain information |
|---|
| >COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00695 uxuA mannonate dehydratase | Back alignment and domain information |
|---|
| >COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00629 uvde UV damage endonuclease UvdE | Back alignment and domain information |
|---|
| >COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
| >PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage | Back alignment and domain information |
|---|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03356 BGL beta-galactosidase | Back alignment and domain information |
|---|
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
| >KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01233 lacG 6-phospho-beta-galactosidase | Back alignment and domain information |
|---|
| >PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
| >PLN02849 beta-glucosidase | Back alignment and domain information |
|---|
| >KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional | Back alignment and domain information |
|---|
| >PRK09593 arb 6-phospho-beta-glucosidase; Reviewed | Back alignment and domain information |
|---|
| >PRK09589 celA 6-phospho-beta-glucosidase; Reviewed | Back alignment and domain information |
|---|
| >PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli | Back alignment and domain information |
|---|
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 503 | ||||
| 1a0e_A | 443 | Xylose Isomerase From Thermotoga Neapolitana Length | 1e-134 | ||
| 1a0c_A | 438 | Xylose Isomerase From Thermoanaerobacterium Thermos | 1e-132 | ||
| 1a0d_A | 440 | Xylose Isomerase From Bacillus Stearothermophilus L | 1e-123 | ||
| 6xia_A | 387 | Refinement Of Glucose Isomerase From Streptomyces A | 1e-16 | ||
| 1xya_A | 386 | X-Ray Crystallographic Structures Of D-Xylose Isome | 2e-16 | ||
| 4xia_A | 393 | Structures Of D-xylose Isomerase From Arthrobacter | 2e-16 | ||
| 3kco_A | 388 | Room Temperature Neutron Structure Of D-Xylose Isom | 3e-16 | ||
| 1o1h_A | 387 | Structure Of Glucose Isomerase Derivatized With Kr. | 3e-16 | ||
| 1mnz_A | 388 | Atomic Structure Of Glucose Isomerase Length = 388 | 3e-16 | ||
| 1s5n_A | 386 | Xylose Isomerase In Substrate And Inhibitor Michael | 3e-16 | ||
| 1s5m_A | 386 | Xylose Isomerase In Substrate And Inhibitor Michael | 3e-16 | ||
| 1oad_A | 388 | Glucose Isomerase From Streptomyces Rubiginosus In | 3e-16 | ||
| 1xib_A | 388 | Tri-Iodide Derivative Of Xylose Isomerase From Stre | 3e-16 | ||
| 3gnx_A | 387 | Structure Of Dehydrated D-Xylose Isomerase From Str | 4e-16 | ||
| 1did_A | 394 | Observations Of Reaction Intermediates And The Mech | 4e-16 | ||
| 1clk_A | 387 | Crystal Structure Of Streptomyces Diastaticus No.7 | 6e-16 | ||
| 1xyl_A | 386 | The Role Of The Divalent Metal Ion In Sugar Binding | 6e-16 | ||
| 1qt1_A | 387 | Crystal Structure Of Xylose Isomerase From Streptom | 8e-16 | ||
| 1dxi_A | 388 | Structure Determination Of Glucose Isomerase From S | 1e-15 | ||
| 1xlm_A | 394 | D254e, D256e Mutant Of D-Xylose Isomerase Complexed | 2e-15 | ||
| 1bxb_A | 387 | Xylose Isomerase From Thermus Thermophilus Length = | 3e-13 | ||
| 1bxc_A | 387 | Xylose Isomerase From Thermus Caldophilus Length = | 8e-13 | ||
| 2xin_A | 393 | Protein Engineering Of Xylose (Glucose) Isomerase F | 5e-11 | ||
| 1xim_A | 393 | Arginine Residues As Stabilizing Elements In Protei | 9e-11 | ||
| 5xin_A | 393 | Protein Engineering Of Xylose (Glucose) Isomerase F | 9e-11 | ||
| 3xim_A | 393 | Arginine Residues As Stabilizing Elements In Protei | 9e-11 | ||
| 2xim_A | 393 | Arginine Residues As Stabilizing Elements In Protei | 9e-11 | ||
| 8xim_A | 393 | Protein Engineering Of Xylose (Glucose) Isomerase F | 2e-10 | ||
| 3xin_A | 393 | Protein Engineering Of Xylose (Glucose) Isomerase F | 2e-10 | ||
| 1xin_A | 393 | Protein Engineering Of Xylose (glucose) Isomerase F | 6e-10 |
| >pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana Length = 443 | Back alignment and structure |
|
| >pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium Thermosulfurigenes Length = 438 | Back alignment and structure |
| >pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus Length = 440 | Back alignment and structure |
| >pdb|6XIA|A Chain A, Refinement Of Glucose Isomerase From Streptomyces Albus At 1.65 Angstroms With Data From An Imaging Plate Length = 387 | Back alignment and structure |
| >pdb|1XYA|A Chain A, X-Ray Crystallographic Structures Of D-Xylose Isomerase-Substrate Complexes Position The Substrate And Provide Evidence For Metal Movement During Catalysis Length = 386 | Back alignment and structure |
| >pdb|4XIA|A Chain A, Structures Of D-xylose Isomerase From Arthrobacter Strain B3728 Containing The Inhibitors Xylitol And D-sorbitol At 2.5 Angstroms And 2.3 Angstroms Resolution, Respectively Length = 393 | Back alignment and structure |
| >pdb|3KCO|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase In Complex With Two Ni2+ Cations And D12-D-Glucose In The Linear Form (Refined Jointly With X-Ray Structure 3kbn) Length = 388 | Back alignment and structure |
| >pdb|1O1H|A Chain A, Structure Of Glucose Isomerase Derivatized With Kr. Length = 387 | Back alignment and structure |
| >pdb|1MNZ|A Chain A, Atomic Structure Of Glucose Isomerase Length = 388 | Back alignment and structure |
| >pdb|1S5N|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis States: Atomic Resolution Studies Of A Metal-Mediated Hydride Shift Length = 386 | Back alignment and structure |
| >pdb|1S5M|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis States: Atomic Resolution Studies Of A Metal-Mediated Hydride Shift Length = 386 | Back alignment and structure |
| >pdb|1OAD|A Chain A, Glucose Isomerase From Streptomyces Rubiginosus In P21212 Crystal Form Length = 388 | Back alignment and structure |
| >pdb|1XIB|A Chain A, Modes Of Binding Substrates And Their Analogues To The Enzyme D-Xylose Isomerase Length = 388 | Back alignment and structure |
| >pdb|3GNX|A Chain A, Structure Of Dehydrated D-Xylose Isomerase From Streptomyces Rubiginosus Length = 387 | Back alignment and structure |
| >pdb|1DID|A Chain A, Observations Of Reaction Intermediates And The Mechanism Of Aldose- Ketose Interconversion By D-Xylose Isomerase Length = 394 | Back alignment and structure |
| >pdb|1CLK|A Chain A, Crystal Structure Of Streptomyces Diastaticus No.7 Strain M1033 Xylose Isomerase At 1.9 A Resolution With Pseudo-I222 Space Group Length = 387 | Back alignment and structure |
| >pdb|1XYL|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring Opening, And Isomerization By D-Xylose Isomerase: Replacement Of A Catalytic Metal By An Amino-Acid Length = 386 | Back alignment and structure |
| >pdb|1QT1|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces Diastaticus No.7 M1033 At 1.85 A Resolution Length = 387 | Back alignment and structure |
| >pdb|1DXI|A Chain A, Structure Determination Of Glucose Isomerase From Streptomyces Murinus At 2.6 Angstroms Resolution Length = 388 | Back alignment and structure |
| >pdb|1XLM|A Chain A, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With Al3 And Xylitol Length = 394 | Back alignment and structure |
| >pdb|1BXB|A Chain A, Xylose Isomerase From Thermus Thermophilus Length = 387 | Back alignment and structure |
| >pdb|1BXC|A Chain A, Xylose Isomerase From Thermus Caldophilus Length = 387 | Back alignment and structure |
| >pdb|2XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site- Directed Mutagenesis Of Metal Binding Sites Length = 393 | Back alignment and structure |
| >pdb|1XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins Length = 393 | Back alignment and structure |
| >pdb|5XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site- Directed Mutagenesis Of Metal Binding Sites Length = 393 | Back alignment and structure |
| >pdb|3XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins Length = 393 | Back alignment and structure |
| >pdb|2XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins Length = 393 | Back alignment and structure |
| >pdb|8XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site- Directed Mutagenesis Of Metal Binding Sites Length = 393 | Back alignment and structure |
| >pdb|3XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site- Directed Mutagenesis Of Metal Binding Sites Length = 393 | Back alignment and structure |
| >pdb|1XIN|A Chain A, Protein Engineering Of Xylose (glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site- Directed Mutagenesis Of Metal Binding Sites Length = 393 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A Length = 438 | Back alignment and structure |
|---|
Score = 451 bits (1160), Expect = e-156
Identities = 239/434 (55%), Positives = 304/434 (70%), Gaps = 1/434 (0%)
Query: 71 EFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGV 130
++F + KIKYEGP S N +FK+YNPEEVI GK M++ +RFS+A+WHTF G+D FG
Sbjct: 2 KYFENVSKIKYEGPKSNNPYSFKFYNPEEVIDGKTMEEHLRFSIAYWHTFTADGTDQFGK 61
Query: 131 PTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEV 190
T PW T+ M +AK R+ A FEF DK+ ++CFHDRDIAP+G+TL+E N NLD +
Sbjct: 62 ATMQRPWNHYTDPMDIAKARVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTI 121
Query: 191 VALAKELQG-TKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG 249
VA+ K+ +K + LWGTA LFS+PR++HGA+TS V+AY+AAQVKKA+E+T LGG
Sbjct: 122 VAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKELGG 181
Query: 250 ENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ 309
ENYVFWGGREGY++LLNTDM E+D+ A F A Y K+IGF+G LIEPKP+EPTKHQ
Sbjct: 182 ENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPTKHQ 241
Query: 310 YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDP 369
YD+D A FLRKY L FK+NIE NHATL+ H H++ AR+NG+LG+IDANTGD
Sbjct: 242 YDFDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDM 301
Query: 370 QVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDT 429
+GWDTDQF TDI T M VIK GG GG NFDAK+RR S + EDLF+ HI GMD
Sbjct: 302 LLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDA 361
Query: 430 VARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPS 489
A+G + A KL++D + + +RY S+ IG I +GKADF LEK A+E + S
Sbjct: 362 FAKGFKVAYKLVKDRVFDKFIEERYASYKDGIGADIVSGKADFRSLEKYALERSQIVNKS 421
Query: 490 AKQELAEMIFQSAI 503
+QEL E I +
Sbjct: 422 GRQELLESILNQYL 435
|
| >1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A Length = 387 | Back alignment and structure |
|---|
| >1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ... Length = 386 | Back alignment and structure |
|---|
| >1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A* Length = 394 | Back alignment and structure |
|---|
| >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A* Length = 393 | Back alignment and structure |
|---|
| >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} Length = 333 | Back alignment and structure |
|---|
| >3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* Length = 438 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} PDB: 3uu0_A Length = 424 | Back alignment and structure |
|---|
| >3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} Length = 316 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 503 | |||
| 1a0c_A | 438 | Xylose isomerase; ketolisomerase, xylose metabolis | 100.0 | |
| 1xim_A | 393 | D-xylose isomerase; isomerase(intramolecular oxido | 100.0 | |
| 1bxb_A | 387 | Xylose isomerase; xylose metabolism; 2.20A {Thermu | 100.0 | |
| 3p14_A | 424 | L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus | 100.0 | |
| 3m0m_A | 438 | L-rhamnose isomerase; beta/alpha barrel, HOMO-tetr | 100.0 | |
| 1xla_A | 394 | D-xylose isomerase; isomerase(intramolecular oxido | 100.0 | |
| 1muw_A | 386 | Xylose isomerase; atomic resolution, disorder; 0.8 | 100.0 | |
| 3ktc_A | 333 | Xylose isomerase; putative sugar isomerase, struct | 100.0 | |
| 1d8w_A | 426 | L-rhamnose isomerase; beta-alpha-8-barrels, aldose | 99.96 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 99.85 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 99.84 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 99.84 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 99.83 | |
| 3qxb_A | 316 | Putative xylose isomerase; structural genomics, jo | 99.82 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 99.82 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 99.82 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 99.81 | |
| 2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 | 99.79 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 99.79 | |
| 2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, | 99.79 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 99.78 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 99.78 | |
| 3cny_A | 301 | Inositol catabolism protein IOLE; xylose isomerase | 99.77 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 99.77 | |
| 2zds_A | 340 | Putative DNA-binding protein; TIM-barrel fold, str | 99.76 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 99.72 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 99.72 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 99.71 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 99.7 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 99.7 | |
| 2g0w_A | 296 | LMO2234 protein; putative sugar isomerase, structu | 99.68 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 99.63 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 99.62 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 99.58 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 99.58 | |
| 3ayv_A | 254 | Putative uncharacterized protein TTHB071; structur | 99.57 | |
| 3bdk_A | 386 | D-mannonate dehydratase; xylose isomerase-like TIM | 99.52 | |
| 1tz9_A | 367 | Mannonate dehydratase; alpha-beta protein, structu | 99.51 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 99.48 | |
| 1yx1_A | 264 | Hypothetical protein PA2260; structural genomics, | 99.25 | |
| 2j6v_A | 301 | UV endonuclease, UVDE; plasmid, TIM barrel, DNA re | 99.19 | |
| 3tc3_A | 310 | UV damage endonuclease; TIM-barrel, hydrolase; 1.5 | 96.6 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 96.27 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 95.2 | |
| 2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 | 90.48 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 90.09 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 89.91 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 89.53 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 89.49 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 88.17 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 87.94 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 85.33 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 84.92 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 84.32 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 83.57 | |
| 1a0c_A | 438 | Xylose isomerase; ketolisomerase, xylose metabolis | 82.17 |
| >1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-112 Score=894.12 Aligned_cols=432 Identities=55% Similarity=0.956 Sum_probs=422.3
Q ss_pred ccCCCCCcccccCCCCCCCccccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 037393 71 EFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRR 150 (503)
Q Consensus 71 ~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r 150 (503)
+|||+|+||+||||+|+||||||||||+|+|+||||+|||||||+|||||+++|+||||+||..|||++.+||+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~~~~~~g~d~fg~~t~~~~~~~~~~~~~~~~~~ 81 (438)
T 1a0c_A 2 KYFENVSKIKYEGPKSNNPYSFKFYNPEEVIDGKTMEEHLRFSIAYWHTFTADGTDQFGKATMQRPWNHYTDPMDIAKAR 81 (438)
T ss_dssp CSCTTCCCCEECCTTCCCSSEESSCCTTCEETTEEHHHHHCEEEEHHHHHTCCSCBTTBCCCCCCGGGGCCSHHHHHHHH
T ss_pred CccCCCCceeecCCCCCCCceecccCHHHhhCccchhhhceEEEehhhhcCCCCCCCCCCCCCCCCcccccCHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHH
Q 037393 151 MRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAV 229 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~V 229 (503)
++++|++++++|+++||||++|++|++.++.|++.+++++++.+++++ ++||++.|+|+|+|.||+|++|.+||||+++
T Consensus 82 ~~~ale~~a~lG~~~VE~~~~~~~p~~~~~~e~~~~l~~~~~~lk~~l~~~GL~~~~~t~nl~~h~~y~~G~~~spd~ev 161 (438)
T 1a0c_A 82 VEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADV 161 (438)
T ss_dssp HHHHHHHHHHHTCSEEEEEHHHHSCCCSSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECCCSSSGGGTTCSTTCSCHHH
T ss_pred HHHHHHHHHHcCCCEEEeccccccccccchhhhhccHHHHHHHHHHHHHHhCCceEeccccccCCCccccCCCCCCCHHH
Confidence 999999999999999999999999999999999999999888888888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCC
Q 037393 230 YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ 309 (503)
Q Consensus 230 Ra~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~ 309 (503)
|++++++++++||+|++||++.|++|+|++||+++.+++++++|++++++|+++++|+++.|++++|+|||+|++|++++
T Consensus 162 R~~ai~~lk~aId~A~~LGa~~vv~~~G~~G~~~~~~~~~~~~~~~~~e~L~~~~~~A~~~Gv~v~l~IEp~p~~~~~~~ 241 (438)
T 1a0c_A 162 FAYSAAQVKKALEITKELGGENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPTKHQ 241 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCCSCSSSSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHH
Q 037393 310 YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIM 389 (503)
Q Consensus 310 y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m 389 (503)
|++++++++.+++++|.|+++|||+|++|++++|+++++.+..+...++|+|||+||+++++||++|++|.++...+..|
T Consensus 242 ~~~t~~~al~li~~vg~pn~vgv~lDt~H~~~~g~di~~~i~~~~~~~~L~hvHlnD~~~~~g~d~d~~p~~~~~~~~~i 321 (438)
T 1a0c_A 242 YDFDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDMLLGWDTDQFPTDIRMTTLAM 321 (438)
T ss_dssp SSCSHHHHHHHHHHTTCTTTEEEEEEHHHHHHTTCCHHHHHHHHHHTTCEEEEECCBCCTTSBSCCCBCCCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCCeEEEEEEhhhhhhcCCCHHHHHHHhcCCCcEEEEECCCCCCCCCCCCCcCCCcchHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999998777889
Q ss_pred HHHHHhCCCCC-CcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcC
Q 037393 390 LSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAG 468 (503)
Q Consensus 390 ~~iLk~gG~~~-Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g 468 (503)
+++|+.+|+ + |+++||+||+|+|+++||++.+|+++|++||++|++|+++++++.|++++++||+||++|+|++|++|
T Consensus 322 ~~~L~~~GY-~~G~v~~E~~p~~~s~e~ed~~~s~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (438)
T 1a0c_A 322 YEVIKMGGF-DKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDRVFDKFIEERYASYKDGIGADIVSG 400 (438)
T ss_dssp HHHHHTTSC-SSCCEEECCCCCTTCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTGGGSSHHHHHHHHT
T ss_pred HHHHHHhCC-CCCceEEEeeccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHhccchHHHHHHHcC
Confidence 999999996 6 99999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCchhHHHHHHhhhcC
Q 037393 469 KADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 469 ~~~~~~l~~~a~~~~~~~~~sg~qe~~e~~~n~~~ 503 (503)
+++||+|++||+++++|++.|||||++|++||+||
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T 1a0c_A 401 KADFRSLEKYALERSQIVNKSGRQELLESILNQYL 435 (438)
T ss_dssp CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999996
|
| >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A* | Back alignment and structure |
|---|
| >1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A | Back alignment and structure |
|---|
| >3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A | Back alignment and structure |
|---|
| >3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A* | Back alignment and structure |
|---|
| >1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A* | Back alignment and structure |
|---|
| >1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ... | Back alignment and structure |
|---|
| >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
| >1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A* | Back alignment and structure |
|---|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
| >3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
| >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
|---|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
| >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
| >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
| >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 | Back alignment and structure |
|---|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A | Back alignment and structure |
|---|
| >3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A | Back alignment and structure |
|---|
| >1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6 | Back alignment and structure |
|---|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 | Back alignment and structure |
|---|
| >2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A | Back alignment and structure |
|---|
| >3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
| >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
|---|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
| >1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 503 | ||||
| d1a0ca_ | 437 | c.1.15.3 (A:) D-xylose isomerase {Clostridium ther | 0.0 | |
| d1muwa_ | 386 | c.1.15.3 (A:) D-xylose isomerase {Streptomyces oli | 1e-111 | |
| d1bxba_ | 387 | c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticu | 1e-109 | |
| d1xlma_ | 393 | c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, st | 1e-109 | |
| d1xima_ | 392 | c.1.15.3 (A:) D-xylose isomerase {Actinoplanes mis | 1e-105 |
| >d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]
Score = 557 bits (1437), Expect = 0.0
Identities = 239/429 (55%), Positives = 303/429 (70%), Gaps = 1/429 (0%)
Query: 71 EFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGV 130
++F + KIKYEGP S N +FK+YNPEEVI GK M++ +RFS+A+WHTF G+D FG
Sbjct: 2 KYFENVSKIKYEGPKSNNPYSFKFYNPEEVIDGKTMEEHLRFSIAYWHTFTADGTDQFGK 61
Query: 131 PTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEV 190
T PW T+ M +AK R+ A FEF DK+ ++CFHDRDIAP+G+TL+E N NLD +
Sbjct: 62 ATMQRPWNHYTDPMDIAKARVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTI 121
Query: 191 VALAKELQG-TKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG 249
VA+ K+ +K + LWGTA LFS+PR++HGA+TS V+AY+AAQVKKA+E+T LGG
Sbjct: 122 VAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKELGG 181
Query: 250 ENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ 309
ENYVFWGGREGY++LLNTDM E+D+ A F A Y K+IGF+G LIEPKP+EPTKHQ
Sbjct: 182 ENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPTKHQ 241
Query: 310 YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDP 369
YD+D A FLRKY L FK+NIE NHATL+ H H++ AR+NG+LG+IDANTGD
Sbjct: 242 YDFDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDM 301
Query: 370 QVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDT 429
+GWDTDQF TDI T M VIK GG GG NFDAK+RR S + EDLF+ HI GMD
Sbjct: 302 LLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDA 361
Query: 430 VARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPS 489
A+G + A KL++D + + +RY S+ IG I +GKADF LEK A+E + S
Sbjct: 362 FAKGFKVAYKLVKDRVFDKFIEERYASYKDGIGADIVSGKADFRSLEKYALERSQIVNKS 421
Query: 490 AKQELAEMI 498
+QEL E I
Sbjct: 422 GRQELLESI 430
|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} Length = 386 | Back information, alignment and structure |
|---|
| >d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]} Length = 387 | Back information, alignment and structure |
|---|
| >d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]} Length = 393 | Back information, alignment and structure |
|---|
| >d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} Length = 392 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 503 | |||
| d1a0ca_ | 437 | D-xylose isomerase {Clostridium thermosulfurogenes | 100.0 | |
| d1bxba_ | 387 | D-xylose isomerase {Thermus aquaticus, subsp. Ther | 100.0 | |
| d1muwa_ | 386 | D-xylose isomerase {Streptomyces olivochromogenes | 100.0 | |
| d1xlma_ | 393 | D-xylose isomerase {Arthrobacter, strain b3728 [Ta | 100.0 | |
| d1xima_ | 392 | D-xylose isomerase {Actinoplanes missouriensis [Ta | 100.0 | |
| d1d8wa_ | 416 | L-rhamnose isomerase {Escherichia coli [TaxId: 562 | 99.95 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 99.8 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 99.76 | |
| d1k77a_ | 260 | Hypothetical protein YgbM (EC1530) {Escherichia co | 99.72 | |
| d1qtwa_ | 285 | Endonuclease IV {Escherichia coli [TaxId: 562]} | 99.6 | |
| d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogen | 99.58 | |
| d1xp3a1 | 297 | Endonuclease IV {Bacillus anthracis [TaxId: 1392]} | 99.33 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 99.31 | |
| d1tz9a_ | 353 | Mannonate dehydratase UxuA {Enterococcus faecalis | 98.77 | |
| d1e4mm_ | 499 | Plant beta-glucosidase (myrosinase) {White mustard | 93.72 | |
| d1k77a_ | 260 | Hypothetical protein YgbM (EC1530) {Escherichia co | 88.65 | |
| d1qoxa_ | 449 | Beta-glucosidase A {Bacillus circulans, subsp. alk | 85.15 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 80.68 |
| >d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]
Probab=100.00 E-value=3.8e-158 Score=1228.21 Aligned_cols=434 Identities=55% Similarity=0.952 Sum_probs=431.0
Q ss_pred cccCCCCCcccccCCCCCCCccccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 037393 70 GEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKR 149 (503)
Q Consensus 70 ~~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~ 149 (503)
.|||++|+||+||||+|+||||||||||+|+|+||||+|||||||||||||||+|+||||+||+.|||+..+|||++|++
T Consensus 1 ~eyf~~i~~i~yeg~~s~nplaf~~y~~~~~v~gk~m~ehlrFav~yWhtf~~~G~DpFG~~t~~rpw~~~~d~~~~a~~ 80 (437)
T d1a0ca_ 1 NKYFENVSKIKYEGPKSNNPYSFKFYNPEEVIDGKTMEEHLRFSIAYWHTFTADGTDQFGKATMQRPWNHYTDPMDIAKA 80 (437)
T ss_dssp CCSCTTCCCCEECCTTCCCSSEESSCCTTCEETTEEHHHHHCEEEEHHHHHTCCSCBTTBCCCCCCGGGGCCSHHHHHHH
T ss_pred CcccCCCCceeeeCCCCCCCccccccCCcceECCccHhHhcceEEEeeeecCCCCcCCCCcccccCCCccCCCHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHH
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVA 228 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~ 228 (503)
|+++|||+|+|||++||||||+|++|+|+|++|+++|+++||+++|+++ +|||||+|+|||||+||+||+||+|||||+
T Consensus 81 ~~d~afef~~klg~~~~~FHD~D~~p~g~s~~e~~~~l~~i~~~~k~~~~~tG~kl~~~t~nlF~~p~y~~Ga~TnPD~~ 160 (437)
T d1a0ca_ 81 RVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNAD 160 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEHHHHSCCCSSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECCCSSSGGGTTCSTTCSCHH
T ss_pred HHHHHHHHHHHhCCceEeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeccccccceeccceecCcccCCCHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCC
Q 037393 229 VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKH 308 (503)
Q Consensus 229 VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h 308 (503)
||++|++|+|+|||++++|||++||||+|||||+|++|+|++++|+|++++|+++++|++++|++++|+|||||+|||+|
T Consensus 161 Vra~A~~~vk~aid~a~~LGa~~~vlWgGreGydy~~~~D~~~~~d~l~e~l~~v~dy~~~ig~~~~~~IEpKP~EP~~h 240 (437)
T d1a0ca_ 161 VFAYSAAQVKKALEITKELGGENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPTKH 240 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCCSCSSSSE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCCccccCccccCHHHHHHHHHHHHHHHHHHHHhcCCCeeEEeccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHH
Q 037393 309 QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSI 388 (503)
Q Consensus 309 ~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~ 388 (503)
||+||+||+|+|++++|++++||||||+||++||||||+|++++|+++|||||||+|||++|+|||+||||+|+++++++
T Consensus 241 ~~~~d~~t~l~fl~~~gl~~~~gvniE~gHa~mAG~n~~h~va~a~~~gkLg~id~Ndg~~~~gwD~d~F~~~~~~~a~~ 320 (437)
T d1a0ca_ 241 QYDFDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDMLLGWDTDQFPTDIRMTTLA 320 (437)
T ss_dssp ESSCSHHHHHHHHHHTTCTTTEEEEEEHHHHHHTTCCHHHHHHHHHHTTCEEEEECCBCCTTSBSCCCBCCCCHHHHHHH
T ss_pred eeccCHHHHHHHHHHhCCchheeeccccccccccCCCHHHHHHHHHHcCCeEEEecCCCCcccCCCCCcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcC
Q 037393 389 MLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAG 468 (503)
Q Consensus 389 m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g 468 (503)
|++||++||+.+||+|||+|+||+|+||+|+|++||++||+|||+|++|++|++++.+++++++||+||++|+|++|++|
T Consensus 321 ~~~iL~~gG~~~Gg~nfDak~rr~S~dp~Dlf~ahI~GmdtfArgl~~a~~il~d~~l~~~~~~RYas~~~g~G~~i~~g 400 (437)
T d1a0ca_ 321 MYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDRVFDKFIEERYASYKDGIGADIVSG 400 (437)
T ss_dssp HHHHHHTTSCSSCCEEECCCCCTTCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTGGGSSHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCccccccccccccChhhhHHHhhchHHHHHHHHHHHHHHHhccchHHHHHHHHhccccccchHHhcC
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCchhHHHHHHhhhcC
Q 037393 469 KADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 469 ~~~~~~l~~~a~~~~~~~~~sg~qe~~e~~~n~~~ 503 (503)
+.||++|++|++++++|+++|||||+||+|||+||
T Consensus 401 ~~~l~~L~~~~~d~~~~~~~Sg~qE~le~l~n~yl 435 (437)
T d1a0ca_ 401 KADFRSLEKYALERSQIVNKSGRQELLESILNQYL 435 (437)
T ss_dssp CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCcccCCccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999996
|
| >d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} | Back information, alignment and structure |
|---|
| >d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]} | Back information, alignment and structure |
|---|
| >d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} | Back information, alignment and structure |
|---|
| >d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White mustard (Sinapis alba) [TaxId: 3728]} | Back information, alignment and structure |
|---|
| >d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|