Citrus Sinensis ID: 037413
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 530 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJH8 | 527 | High affinity nitrate tra | yes | no | 0.984 | 0.990 | 0.758 | 0.0 | |
| O82811 | 530 | High-affinity nitrate tra | no | no | 1.0 | 1.0 | 0.735 | 0.0 | |
| Q9FJH7 | 539 | High affinity nitrate tra | no | no | 0.998 | 0.981 | 0.704 | 0.0 | |
| Q9LXH0 | 542 | High affinity nitrate tra | no | no | 0.998 | 0.976 | 0.692 | 0.0 | |
| Q9LMZ9 | 522 | High-affinity nitrate tra | no | no | 0.964 | 0.978 | 0.707 | 0.0 | |
| Q9LPV5 | 502 | High affinity nitrate tra | no | no | 0.907 | 0.958 | 0.592 | 1e-172 | |
| Q9LYK2 | 493 | High affinity nitrate tra | no | no | 0.860 | 0.924 | 0.477 | 1e-121 | |
| P22152 | 507 | Nitrate transporter OS=Em | yes | no | 0.766 | 0.800 | 0.283 | 6e-32 | |
| P42432 | 401 | Nitrate transporter OS=Ba | yes | no | 0.607 | 0.802 | 0.236 | 2e-07 | |
| Q8NV31 | 389 | Probable nitrate transpor | yes | no | 0.605 | 0.825 | 0.230 | 1e-06 |
| >sp|Q9FJH8|NRT24_ARATH High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/522 (75%), Positives = 455/522 (87%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MAD PG+SMHGV+ +E+++AFSV SP +P+D AKF LPVD+EHKAKVFK+ S +P
Sbjct: 1 MADGFGEPGSSMHGVTGREQSYAFSVESPAVPSDSSAKFSLPVDTEHKAKVFKLLSFEAP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHL+W+SFFTCF+STFAAAPLVPIIRDNLNL + D+GNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAPTVFSM FV A GYI RFMIGF LATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
G+IIGLVNGTAAGWGNMGGG+TQLL P +YE+IRR G+T FTAWR+AFF PG +H+IMGI
Sbjct: 181 GQIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGN +TL+KKG V DKF KVLWYAITNYRTW+FVLLYG S+G+ELT DN
Sbjct: 241 LVLTLGQDLPDGNRSTLEKKGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYFFDRF+LKLHTAG+IAA+FGMAN FARP+GG SD+AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGIIAASFGMANFFARPIGGWASDIAARRFGMRGRLWTLWIIQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG FC+ LGRA+TLP +++ MILFS+ QAACGATF IIPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGFFCLWLGRATTLPTAVVFMILFSLGAQAACGATFAIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++S ST G++ MG+MI+ CT PV LVHFPQWGSMFLP+T+D KS E
Sbjct: 421 FGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTEDEVKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTP 522
EYYY EW E EK++G+H GSLKFA NSRSERG+RV S P+P
Sbjct: 481 EYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRVASAPSP 522
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Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82811|NRT21_ARATH High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/530 (73%), Positives = 450/530 (84%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
M D+ PG+SMHGV+ +E++FAFSV SPI+ TD AKF LPVD+EHKA VFK+FS A P
Sbjct: 1 MGDSTGEPGSSMHGVTGREQSFAFSVQSPIVHTDKTAKFDLPVDTEHKATVFKLFSFAKP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SF TCFVSTFAAAPLVPIIR+NLNL K DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAPTVFSM FVS A G+I RFMIGF LATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
+IIGLVNGTAAGWGNMGGGITQLL P +YE+IRR G+T FTAWRIAFF PG LH+IMGI
Sbjct: 181 SQIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVL LGQDLPDGN TL+K G+V DKF K+LWYA+TNYRTWIFVLLYG S+G+EL+ DN
Sbjct: 241 LVLNLGQDLPDGNRATLEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYFFDRF+LKLHTAG+IAA FGMAN FARP GG SD AA+ FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGLIAACFGMANFFARPAGGYASDFAAKYFGMRGRLWTLWIIQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
GG+FC+ LGRA+TL ++++M+LFS+ QAACGATF I+PF+SRR+LG+ISGLTGAGGN
Sbjct: 361 AGGLFCVWLGRANTLVTAVVAMVLFSMGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQLLFF++S +T G++ MG+MIV CT PV LVHFPQWGSMFLP + D K E
Sbjct: 421 FGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPSTDPVKGTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
+YYG+EWNE+EKQ+ +H GSL+FAEN++SE G+RV S TP TP V
Sbjct: 481 AHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGRRVRSAATPPENTPNNV 530
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Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NTR3.1. Acts as a repressor of lateral root initiation under high sucrose/low nitrate conditions. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/534 (70%), Positives = 441/534 (82%), Gaps = 5/534 (0%)
Query: 2 ADTENTPGNSMHGVSAKEKAFAFSV---ASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLA 58
++ E + G S+HGV+A+E+ F+FSV + + DP AKF LPVDSEH+AKVF S A
Sbjct: 6 SNEEGSIGTSLHGVTAREQVFSFSVDASSQTVQSDDPTAKFALPVDSEHRAKVFNPLSFA 65
Query: 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVM 118
PHM FHL WLSFFTCF+STFAAAPLVPIIRDNL+L KTDIGNAG+ASVSG+IFSRL M
Sbjct: 66 KPHMRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAM 125
Query: 119 GAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTM 178
GAVCDLLG RYG AF +ML+APTVFSM FV GY+ RFMIGF LATFVSCQYW S M
Sbjct: 126 GAVCDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVM 185
Query: 179 FNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238
FNGKIIGLVNG A GWG+MGGG+TQLL P ++ +I+ AGATPF AWRIAFF PG L V+M
Sbjct: 186 FNGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVM 245
Query: 239 GILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298
GILVL+LGQDLPDGNL+TLQK G V DKF KV W+A+ NYRTWI +LYG S+GIELTI
Sbjct: 246 GILVLSLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFVLYGSSMGIELTI 305
Query: 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358
+NVI+ YF+DRFNLKL TAG++AA+FGMAN ARP GG SD+AAR FGMRGRLW L+I
Sbjct: 306 NNVISGYFYDRFNLKLQTAGIVAASFGMANFIARPFGGYASDVAARVFGMRGRLWTLWIF 365
Query: 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAG 418
QT+G +FCI LGRAS+LP++IL+M+LFSI TQAACGA FG+ PF+SRRSLG+ISGLTGAG
Sbjct: 366 QTVGALFCIWLGRASSLPIAILAMMLFSIGTQAACGALFGVAPFVSRRSLGLISGLTGAG 425
Query: 419 GNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKS 478
GNFGSGLTQLLFF+S+R STA G+SLMG+M V CT PVA +HFPQWGSMFL + D E+S
Sbjct: 426 GNFGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPSTDGERS 485
Query: 479 KEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRV--GSDPTPISATPAPV 530
+EEYYYG+EW E EKQ+GLH GS+KFAENSRSERG++V + PTP + TP+ V
Sbjct: 486 QEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGRKVALANIPTPENGTPSHV 539
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Involved in high-affinity nitrate transport. Acts as a dual component transporter with NTR3.1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXH0|NRT26_ARATH High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/537 (69%), Positives = 442/537 (82%), Gaps = 8/537 (1%)
Query: 2 ADTENTPGNSMHGVSAKEKAFAFSV------ASPIMPTDPIAKFKLPVDSEHKAKVFKIF 55
++ + + G S+HGV+A+E+ F+FSV + + DP AKF LPVDSEH+AKVFK
Sbjct: 6 SNEDGSIGTSLHGVTAREQVFSFSVQEDVPSSQAVRTNDPTAKFALPVDSEHRAKVFKPL 65
Query: 56 SLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSR 115
S A PHM FHL W+SFFTCF+STFAAAPLVP+IRDNL+L KTDIGNAG+ASVSG+IFSR
Sbjct: 66 SFAKPHMRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVSGAIFSR 125
Query: 116 LVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWM 175
L MGAVCDLLG RYG AF +ML+AP VFSM FV+ A Y+A RFMIGF LATFVSCQYW
Sbjct: 126 LAMGAVCDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFVSCQYWT 185
Query: 176 STMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235
S MF GKIIGLVNG A GWG+MGGG+TQLL P ++ +I+ GATPFTAWR AFF PG L
Sbjct: 186 SVMFTGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFFIPGILQ 245
Query: 236 VIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295
++MGILVLTLGQDLPDGNL+TLQK G V DKF KV W+A+ NYRTWI +LYG S+G+E
Sbjct: 246 IVMGILVLTLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFMLYGFSMGVE 305
Query: 296 LTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL 355
LTI+NVI+ YF+DRFNL LHTAG+IAA+FGMAN FARP GG SD+AAR FGMRGRLW L
Sbjct: 306 LTINNVISGYFYDRFNLTLHTAGIIAASFGMANFFARPFGGYASDVAARLFGMRGRLWIL 365
Query: 356 YIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLT 415
+I+QT+G +FCI LGRAS+LP++IL+M+LFS+ TQAACGA FG+ PF+SRRSLG+ISGLT
Sbjct: 366 WILQTVGALFCIWLGRASSLPIAILAMMLFSMGTQAACGALFGVAPFVSRRSLGLISGLT 425
Query: 416 GAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDS 475
GAGGNFGSG+TQLLFF+SSR STA G+SLMG+M V C+ PVA +HFPQWGSMFL ++D
Sbjct: 426 GAGGNFGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQDG 485
Query: 476 EKSKEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKR--VGSDPTPISATPAPV 530
EKSKEE+YYGAEW EEEK GLH GS+KFAENSRSERG++ + PTP + +PA V
Sbjct: 486 EKSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGRKAMLADIPTPETGSPAHV 542
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Involved in high-affinity nitrate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMZ9|NRT22_ARATH High-affinity nitrate transporter 2.2 OS=Arabidopsis thaliana GN=NRT2.2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/513 (70%), Positives = 431/513 (84%), Gaps = 2/513 (0%)
Query: 4 TENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASPHMT 63
+ + PG+SMHGV+ +E+++AFSV PT+ K+ LPVD+E KA VFK+FS A PHM
Sbjct: 3 STDEPGSSMHGVTGREQSYAFSVDGS-EPTNTKKKYNLPVDAEDKATVFKLFSFAKPHMR 61
Query: 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCD 123
TFHLSW+SF TCFVSTFAAAPL+PIIR+NLNL K DIGNAG+ASVSGSIFSRLVMGAVCD
Sbjct: 62 TFHLSWISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGAVCD 121
Query: 124 LLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKI 183
LLGPRYGCAFL+MLSAPTVFSM FVS A G+I RFMIGF LATFVSCQYWMSTMFN +I
Sbjct: 122 LLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNSQI 181
Query: 184 IGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243
IGLVNGTAAGWGNMGGGITQLL P +YE+IRR G+T FTAWRIAFF PG LH+IMGILVL
Sbjct: 182 IGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGILVL 241
Query: 244 TLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIA 303
TLGQDLP GN ++K G+V DKF K+LWYA+TNYRTWIFVLLYG S+G+EL+ DNVIA
Sbjct: 242 TLGQDLPGGNRAAMEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIA 301
Query: 304 EYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGG 363
EYFFDRF+LKLHTAG+IAA FGMAN FARP GG SD+AA+ FGMRGRLW L+I+QT GG
Sbjct: 302 EYFFDRFHLKLHTAGIIAACFGMANFFARPAGGWASDIAAKRFGMRGRLWTLWIIQTSGG 361
Query: 364 IFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGS 423
+FC+ LGRA+TL +++SM+LFS+ QAACGATF I+PF+SRR+LG+ISGLTGAGGNFGS
Sbjct: 362 LFCVWLGRANTLVTAVVSMVLFSLGAQAACGATFAIVPFVSRRALGIISGLTGAGGNFGS 421
Query: 424 GLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKEEYY 483
GLTQL+FF++SR +T G++ MG+MIV CT PV L+HFPQWGSMF P + DS + E YY
Sbjct: 422 GLTQLVFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSNDSVDATEHYY 481
Query: 484 YGAEWNEEEKQRGLHHGSLKFAENSRSERGKRV 516
G E+++EE+Q G+H S FA+ +++E G V
Sbjct: 482 VG-EYSKEEQQIGMHLKSKLFADGAKTEGGSSV 513
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Involved in high-affinity nitrate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPV5|NRT25_ARATH High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 603 bits (1556), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/483 (59%), Positives = 356/483 (73%), Gaps = 2/483 (0%)
Query: 38 KFKLPVDSEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIK 97
+F LPVD+E+KA F++FS+A PHM FHLSW FF CFVSTFAA PL+P+IR+NLNL
Sbjct: 20 RFALPVDAENKATTFRLFSVAKPHMRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTA 79
Query: 98 TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAA 157
TDIGNAGIASVSG++F+R+VMG CDL GPR A L + +AP V+ + S G+I
Sbjct: 80 TDIGNAGIASVSGAVFARIVMGTACDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMV 139
Query: 158 RFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAG 217
RF GFSLATFVS Q+WMS+MF+G ++G NG AAGWGN+GGG TQL+ P ++ LIR G
Sbjct: 140 RFFAGFSLATFVSTQFWMSSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMG 199
Query: 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAIT 277
AT FTAWRIAFF PG + VL GQDLPDG+ + K G+ D KV+ I
Sbjct: 200 ATKFTAWRIAFFIPGLFQTLSAFAVLLFGQDLPDGDYWAMHKSGEREKDDVGKVISNGIK 259
Query: 278 NYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGL 337
NYR WI L YG G+ELTIDN+IAEYFFDRF+LKL TAG+IAA+FG+AN FARP GG+
Sbjct: 260 NYRGWITALAYGYCFGVELTIDNIIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGI 319
Query: 338 MSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATF 397
SD +R FGMRGRLW +IVQT GG+ C CLG+ S+L +SI+ M++FS+ QAACG TF
Sbjct: 320 FSDFMSRRFGMRGRLWAWWIVQTSGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTF 379
Query: 398 GIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVA 457
G++PFISRRSLGV+SG+TGAGGN G+ LTQL+FF S ++ TGI+LMG+M + C+ P+
Sbjct: 380 GVVPFISRRSLGVVSGMTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPIC 439
Query: 458 LVHFPQWGSMFLPATKDSEKSKEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVG 517
L++FPQWG MF S+K EE YY AEWN+EEK++ LH GS KFAE S SERG+
Sbjct: 440 LIYFPQWGGMF--CGPSSKKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRATT 497
Query: 518 SDP 520
+ P
Sbjct: 498 THP 500
|
Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYK2|NRT27_ARATH High affinity nitrate transporter 2.7 OS=Arabidopsis thaliana GN=NRT2.7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/480 (47%), Positives = 305/480 (63%), Gaps = 24/480 (5%)
Query: 41 LPVDSEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDI 100
+PVDS+ +A VF+ FSL+SPH FHL+WLS F+CF STF+ PLVP+I +LNL + +
Sbjct: 18 IPVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTV 77
Query: 101 GNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFM 160
AGIAS +GSIFSRL MG +CDL+GPR A L L+AP + S VSS +I RF
Sbjct: 78 SAAGIASFAGSIFSRLAMGPLCDLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFF 137
Query: 161 IGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY----ELIRRA 216
+GFSLA FV+ QYWMS+MF+G +IGL NG +AGW N+G GI+QLL P IY E + RA
Sbjct: 138 VGFSLANFVANQYWMSSMFSGNVIGLANGVSAGWANVGAGISQLLMPLIYSTIAEFLPRA 197
Query: 217 GATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL-NTLQKKGDVPT---------- 265
AWR++F P V +LVL GQD P GN N+ Q K +P
Sbjct: 198 -----VAWRVSFVFPAIFQVTTAVLVLLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEED 252
Query: 266 --DKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAAT 323
F ++L + NYR WI LLYG S G+ELT DNVIA YF++RF + L AG IAA+
Sbjct: 253 ERSSFVEILIGGLGNYRAWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAAS 312
Query: 324 FGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMI 383
FG++NI +RP GG++SD + FGMRGRLW L+IVQ++ G+ C+ LGR ++L SIL M
Sbjct: 313 FGISNIASRPAGGMISDALGKRFGMRGRLWGLWIVQSVAGLLCVLLGRVNSLWGSILVMW 372
Query: 384 LFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGIS 443
+FS+ QAA G FG++PF+S RSLGV++G+TG+GG G+ +TQ L F+ IS
Sbjct: 373 VFSVFVQAASGLVFGVVPFVSTRSLGVVAGITGSGGTVGAVVTQFLLFSGDDVRKQRSIS 432
Query: 444 LMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKEEYYYGAEWNEEEKQRGLHHGSLK 503
LMG+M V ++FPQWG M S +E+ G +E+++ + GSL+
Sbjct: 433 LMGLMTFVFALSVTSIYFPQWGGMC--CGPSSSSEEEDISRGLLVEDEDEEGKVVSGSLR 490
|
Involved in high-affinity nitrate transport. Controls nitrate content in seeds. Arabidopsis thaliana (taxid: 3702) |
| >sp|P22152|CRNA_EMENI Nitrate transporter OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=crnA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 140/493 (28%), Positives = 220/493 (44%), Gaps = 87/493 (17%)
Query: 45 SEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNA 103
+ KA + + + + F SW F F+S +A PL+ + IRD+L++ +T I N+
Sbjct: 16 NNRKALTIPVLNPFNTYGRVFFFSWFGFMLAFLSWYAFPPLLTVTIRDDLDMSQTQIANS 75
Query: 104 GIASVSGSIFSRLVMGAVCDLLGPRYG-CAFLIMLSAPTVFSMVFVSSARGYIAARFMIG 162
I ++ ++ RL+ G +CD GPR L++ S PT + + V+S +G IA RF IG
Sbjct: 76 NIIALLATLLVRLICGPLCDRFGPRLVFIGLLLVGSIPTAMAGL-VTSPQGLIALRFFIG 134
Query: 163 FSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYE-LIRRAGATPF 221
TFV CQ W + F+ I+G N AAG GN GGGIT + P I++ LIR G
Sbjct: 135 ILGGTFVPCQVWCTGFFDKSIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAH 194
Query: 222 TAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQ----------KKGDV-------- 263
AWR+A+ P L V + +L D P G + KG++
Sbjct: 195 KAWRVAYIVPFILIVAAALGMLFTCDDTPTGKWSERHIWMKEDTQTASKGNIVDLSSGAQ 254
Query: 264 ---PTDKFPKVLWYAITNY-------------------------------RTWIFVLLYG 289
P+ P ++ YAI + R F +++
Sbjct: 255 SSRPSGP-PSIIAYAIPDVEKKGTETPLEPQSQAIGQFDAFRANAVASPSRKEAFNVIFS 313
Query: 290 MS-----------LGIELTIDNVIAEYFFDRFNLKLHT-AGVIAATFGMANIFARPLGGL 337
++ G EL I++++ +Y+ F T G AA FG NI RP GG
Sbjct: 314 LATMAVAVPYACSFGSELAINSILGDYYDKNFPYMGQTQTGKWAAMFGFLNIVCRPAGGF 373
Query: 338 MSDMAAR----PFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITT---- 389
++D R P+ + L L +V G F I +G + P S +M F +T
Sbjct: 374 LADFLYRKTNTPWAKKLLLSFLGVVM---GAFMIAMGFSD--PKSEATM--FGLTAGLAF 426
Query: 390 --QAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGI 447
++ GA F ++P + + G++SG+ G GN G G+ + F S H A GI ++G+
Sbjct: 427 FLESCNGAIFSLVPHVHPYANGIVSGMVGGFGNLG-GIIFAIIFRYSHHDYARGIWILGV 485
Query: 448 MIVCCTFPVALVH 460
+ + V+ V
Sbjct: 486 ISMAVFISVSWVR 498
|
Permease for nitrate uptake. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|P42432|NASA_BACSU Nitrate transporter OS=Bacillus subtilis (strain 168) GN=nasA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 37/359 (10%)
Query: 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIG-NAGIASVSGSIFSRLV 117
S H T S+L F F+ L I + L + G + +SGS+F R++
Sbjct: 9 SGHPLTLLCSFLYFDVSFMIWVMLGALGVYISQDFGLSPFEKGLVVAVPILSGSVF-RII 67
Query: 118 MGAVCDLLGPRYGCAFLIMLSA-PTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMS 176
+G + D +GP+ ++++ P ++ S A ++G + A+F S
Sbjct: 68 LGILTDRIGPKKTAVIGMLVTMIPLLWGTFGGRSLTELYAIGILLGVAGASFAVALPMAS 127
Query: 177 TMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHV 236
+ + GL G A G GN G L P + E W I +
Sbjct: 128 RWYPPHLQGLAMGIA-GAGNSGTLFATLFGPRLAEQF---------GWHIVMGIALIPLL 177
Query: 237 IMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIEL 296
I+ IL +++ +D P P+ + K + TW F LLY ++ G +
Sbjct: 178 IVFILFVSMAKDSPAQ-----------PSPQPLKSYLHVFGQKETWFFCLLYSVTFGGFV 226
Query: 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLY 356
+ + ++ +F D++ L AG A F RP+GGL+SD R+
Sbjct: 227 GLSSFLSIFFVDQYQLSKIHAGDFVTLCVAAGSFFRPVGGLISD----------RVGGTK 276
Query: 357 IVQTLGGIFCICLGRASTLP-LSILSMILF--SITTQAACGATFGIIPFISRRSLGVIS 412
++ L I +C+ S+LP LS++ ++LF + GA F ++P R+ +G+++
Sbjct: 277 VLSVLFVIVALCMAGVSSLPSLSMVIVLLFVGMMGLGMGNGAVFQLVPQRFRKEIGMVT 335
|
May function as a nitrate transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8NV31|NART_STAAW Probable nitrate transporter NarT OS=Staphylococcus aureus (strain MW2) GN=narT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 156/365 (42%), Gaps = 44/365 (12%)
Query: 67 LSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNA-GIASVSGSIFSRLVMGAVCDLL 125
L LS F++ APL+P I+ ++N+ + I I + GS+ R+ G + +++
Sbjct: 12 LQTLSLVVGFMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIV 70
Query: 126 GPR--YGCAFLIMLSAPTVFSMVFVSSARG---YIAARFMIGFSLATFVSCQYWMSTMFN 180
G + + +F+++L F + F+S A+ +A+ F +G A F + F
Sbjct: 71 GAKWVFFTSFIVLL-----FPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFP 125
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
+ +GL NG G GN+G ++ L P I +I W+ + + + +
Sbjct: 126 KEKVGLANGIY-GMGNIGTAVSSFLAPPIAGII---------GWQTTVRSYLIIIALFAL 175
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
++ G +T ++K VP K L NY+ + Y ++ G +
Sbjct: 176 IMFIFG--------DTQERKIKVPLMAQMKTLS---KNYKLYYLSYWYFITFGAFVAFGI 224
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
+ Y + F + AG+ + F F RP+GG++ D F L ++V
Sbjct: 225 FLPNYLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGD----KFNAVKVLMIDFVVMI 280
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP--FISR--RSLGVISGLTG 416
+G I LG + + L + + SI G F ++P F++ + G++S + G
Sbjct: 281 IG---AIILGISDHIALFTVGCLTISICAGIGNGLIFKLVPSYFLNEAGSANGIVSMMGG 337
Query: 417 AGGNF 421
GG F
Sbjct: 338 LGGFF 342
|
Probably required for nitrate uptake under anoxic conditions. Also possibly involved in excretion of nitrite produced by the dissimilatory reduction of nitrate. Staphylococcus aureus (strain MW2) (taxid: 196620) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 530 | ||||||
| 255556942 | 532 | nitrate transporter, putative [Ricinus c | 0.996 | 0.992 | 0.837 | 0.0 | |
| 225440043 | 531 | PREDICTED: high affinity nitrate transpo | 0.977 | 0.975 | 0.833 | 0.0 | |
| 39573544 | 530 | high-affinity nitrate transporter [Prunu | 1.0 | 1.0 | 0.807 | 0.0 | |
| 38636547 | 530 | high-affinity nitrate transporter [Prunu | 1.0 | 1.0 | 0.805 | 0.0 | |
| 351721519 | 530 | NRT2 protein [Glycine max] gi|3005576|gb | 1.0 | 1.0 | 0.801 | 0.0 | |
| 356541463 | 530 | PREDICTED: high affinity nitrate transpo | 0.977 | 0.977 | 0.814 | 0.0 | |
| 356543492 | 530 | PREDICTED: high affinity nitrate transpo | 1.0 | 1.0 | 0.796 | 0.0 | |
| 255565393 | 530 | nitrate transporter, putative [Ricinus c | 1.0 | 1.0 | 0.796 | 0.0 | |
| 225436528 | 530 | PREDICTED: high affinity nitrate transpo | 1.0 | 1.0 | 0.796 | 0.0 | |
| 223712778 | 530 | Rehd high-affinity nitrate transporter N | 1.0 | 1.0 | 0.788 | 0.0 |
| >gi|255556942|ref|XP_002519504.1| nitrate transporter, putative [Ricinus communis] gi|223541367|gb|EEF42918.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/530 (83%), Positives = 478/530 (90%), Gaps = 2/530 (0%)
Query: 1 MADTEN-TPGNSMHGVSAKEKAFAFSVAS-PIMPTDPIAKFKLPVDSEHKAKVFKIFSLA 58
MA TE +PG+SMHGVS KE+ FAFSV + P +PTD AKF LPVDSEHKAKVF + SLA
Sbjct: 1 MASTEEMSPGSSMHGVSGKEQTFAFSVTNDPEIPTDTTAKFSLPVDSEHKAKVFNLLSLA 60
Query: 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVM 118
+PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNL K DIGNAGIASVSGSIFSRLVM
Sbjct: 61 NPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLTKKDIGNAGIASVSGSIFSRLVM 120
Query: 119 GAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTM 178
GA CDLLGPRY CAFLIMLSAPTVF M FVSSA GY+A RFMIGFSLATFVSCQ+WMSTM
Sbjct: 121 GAACDLLGPRYACAFLIMLSAPTVFCMTFVSSAGGYVAVRFMIGFSLATFVSCQFWMSTM 180
Query: 179 FNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238
FNGKIIG+VNGTAAGWGNMGGG TQLL P +YELI+RAGATPFTAWRIAFF PG LHVIM
Sbjct: 181 FNGKIIGVVNGTAAGWGNMGGGATQLLMPLLYELIKRAGATPFTAWRIAFFIPGWLHVIM 240
Query: 239 GILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298
GILVL+LGQDLPDGNL+TLQKKGDVP DKF KVLWYAITNYRTW+F LLYGMSLG+ELT
Sbjct: 241 GILVLSLGQDLPDGNLSTLQKKGDVPKDKFSKVLWYAITNYRTWVFFLLYGMSLGVELTT 300
Query: 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358
DNVIAEYFFDRF+LKL TAG IAA FGMANIFARP+GGLMSD+AAR FGMRGRLWNLYI+
Sbjct: 301 DNVIAEYFFDRFDLKLRTAGTIAAIFGMANIFARPMGGLMSDIAARRFGMRGRLWNLYIL 360
Query: 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAG 418
QTLGGIFCICLGR S+LPLS+L MILFS+ QAACGATFGIIPFISRRSLG+ISGLTGAG
Sbjct: 361 QTLGGIFCICLGRVSSLPLSVLFMILFSLGAQAACGATFGIIPFISRRSLGIISGLTGAG 420
Query: 419 GNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKS 478
GNFGSGLTQLLFFTSS ++TATG+SLMGIMIV CT PV LVHFPQWGSMFLPATK+ EK
Sbjct: 421 GNFGSGLTQLLFFTSSTYTTATGLSLMGIMIVACTLPVTLVHFPQWGSMFLPATKNVEKC 480
Query: 479 KEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPA 528
EEYYY +EWN+EEK++GLH GSLKFAENSRSERG+RV S TP S+T A
Sbjct: 481 SEEYYYASEWNQEEKEKGLHQGSLKFAENSRSERGRRVASAATPPSSTAA 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440043|ref|XP_002276817.1| PREDICTED: high affinity nitrate transporter 2.4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/518 (83%), Positives = 470/518 (90%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MAD + +PG+SMHGV+ +E+ FAFSVASP +PTD AKF LPVDSEHKAKVFK+FS A P
Sbjct: 1 MADIQGSPGSSMHGVTGREQTFAFSVASPAIPTDTTAKFALPVDSEHKAKVFKVFSFAKP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVP+IRDNLNL K+DIGNAGIASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWVSFFTCFVSTFAAAPLVPVIRDNLNLRKSDIGNAGIASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAP VF M FVSSA GYIA RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLMMLSAPAVFCMSFVSSAEGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
+IIGLVNGTAAGWGNMGGG TQLL P I+E+I R G TPF AWR+AFF PGCLHVIMGI
Sbjct: 181 SQIIGLVNGTAAGWGNMGGGATQLLMPVIFEIICRVGVTPFMAWRVAFFIPGCLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVL+LGQDLPDGNL TLQKKGDV DKF KVLWYAITNYRTWIFVLLYG SLG+ELT DN
Sbjct: 241 LVLSLGQDLPDGNLGTLQKKGDVSKDKFSKVLWYAITNYRTWIFVLLYGFSLGVELTADN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRF+LKLHTAG IAATFGMANI ARP+GGLMSD+AAR FGMRGRLWNL+I+QT
Sbjct: 301 VIAEYFYDRFDLKLHTAGTIAATFGMANIVARPMGGLMSDLAARRFGMRGRLWNLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCICLGRA++LP+SI SMILFSI QAACGATFGIIPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCICLGRANSLPISISSMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQ LFFTSS++STATGISLMGIMIV CT PVALVHFPQWGSM LP +KD+ +S E
Sbjct: 421 FGSGLTQWLFFTSSKYSTATGISLMGIMIVACTLPVALVHFPQWGSMLLPPSKDAVRSCE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGS 518
EYYYG+EWNE EKQ+GLH GSLKFAENS+SERG+RV S
Sbjct: 481 EYYYGSEWNEAEKQKGLHQGSLKFAENSKSERGRRVVS 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39573544|dbj|BAD04063.1| high-affinity nitrate transporter [Prunus persica] gi|48675349|dbj|BAD22822.1| nitrate transporter [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/530 (80%), Positives = 474/530 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MA+ E PG+SMHGV+ +E+ FAFSVASPI+PTDP AKF LPVDSEHKAKVFKIFSLA+P
Sbjct: 1 MAEVEGEPGSSMHGVTGREQTFAFSVASPIVPTDPTAKFDLPVDSEHKAKVFKIFSLANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVPIIRDNLNL K DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFLIMLSAPTVF M FVS A GY+A RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAGGYLAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
KIIGLVNGTAAGWGNMGGG TQLL P ++++I R GATPFTAWRIAFF PG LHVIMGI
Sbjct: 181 SKIIGLVNGTAAGWGNMGGGATQLLMPLVFDIIGRVGATPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
+VLTLGQDLPDGNL LQKKGDV D+F KVLW+AITNYRTWIFVLLYG S+G+EL+IDN
Sbjct: 241 MVLTLGQDLPDGNLAALQKKGDVAKDQFSKVLWHAITNYRTWIFVLLYGYSMGVELSIDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKLHTAG+IAA FGMANI ARP GG SD AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAAAFGMANIVARPFGGFASDRAARYFGMRGRLWTLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCI LGRA++LP+++ +MILFS+ QAACGATFG+IPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVFAMILFSVGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF+S+ STATG+SLMG+MIVCCT PV LVHFPQWGSMFLP +KD KS E
Sbjct: 421 FGSGLTQLVFFSSAAFSTATGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVVKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YYGAEWNEEEKQ+GLH SL+FAENSRSERG+RV S PTP + TP+ V
Sbjct: 481 EFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRVASAPTPPNTTPSHV 530
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38636547|dbj|BAD02939.1| high-affinity nitrate transporter [Prunus persica] gi|48675347|dbj|BAD22821.1| nitrate transporter [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/530 (80%), Positives = 474/530 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MA+ E PG+SMHGV+ +E+ FAFSVASPI+PTDP AKF LPVDSEHKAKVFKIFSLA+P
Sbjct: 1 MAEVEGEPGSSMHGVTGREQTFAFSVASPIVPTDPTAKFDLPVDSEHKAKVFKIFSLANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVPIIRDNLNL K DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFLIMLSAPTVF M FVS A GY+A RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAGGYLAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
KIIGLVNGTAAGWGNMGGG TQLL P ++++I R GATPFTAWRIAFF PG LHVIMGI
Sbjct: 181 SKIIGLVNGTAAGWGNMGGGATQLLMPLVFDIIGRVGATPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
+VLTLGQDLPDGNL LQKKGDV D+F KVLW+A+TNYRTWIFVLLYG S+G+EL+ DN
Sbjct: 241 MVLTLGQDLPDGNLAALQKKGDVAKDQFSKVLWHAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKLHTAG+IAATFGMAN+ ARP GG SD AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAATFGMANLVARPFGGFASDRAARYFGMRGRLWTLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCI LGRA++LP+++ +MILFS+ QAACGATFG+IPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVFAMILFSVGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF+SS STATG+SLMG+MIVCCT PV LVHFPQWGSMFLP +KD KS E
Sbjct: 421 FGSGLTQLVFFSSSAFSTATGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVVKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YYGAEWNEEEKQ+GLH SL+FAENSRSERG+RV S PTP + TP+ V
Sbjct: 481 EFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRVASAPTPPNTTPSHV 530
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351721519|ref|NP_001236444.1| NRT2 protein [Glycine max] gi|3005576|gb|AAC09320.1| putative high affinity nitrate transporter [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/530 (80%), Positives = 473/530 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MA+ E +PG+SMHGV+ +E+ F SVASPI+PTD AKF LPVDSEHKAKVFK+FSLA+P
Sbjct: 1 MAEIEGSPGSSMHGVTGREQTFVASVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVPIIRDNLNL K+DIGNAG+ASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCD+LGPRYGCAFLIMLSAPTVF M FV A GYIA RF+IGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDMLGPRYGCAFLIMLSAPTVFCMSFVKDAAGYIAVRFLIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
KIIGL NGTAAGWGNMGGG TQL+ P +YELIRRAGATPFTAWRIAFF PG +HVIMGI
Sbjct: 181 SKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGFMHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGNL L+KKGDV DKF KVLWYAITNYRTWIF LLYG S+G+ELT DN
Sbjct: 241 LVLTLGQDLPDGNLGALRKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKLHTAG+IAA+FGMAN+ ARP GG SD+AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCI LGRA++LP+++L+MILFSI QAACGATFGIIPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++S+ STATG+SLMG+MIV CT PV++VHFPQWGSMFLP +KD KS E
Sbjct: 421 FGSGLTQLVFFSTSKFSTATGLSLMGVMIVACTLPVSVVHFPQWGSMFLPPSKDVSKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YY +EWNEEEKQ+GLH SLKFAENSRSERGKRV S PTP +ATP V
Sbjct: 481 EFYYTSEWNEEEKQKGLHQQSLKFAENSRSERGKRVASAPTPPNATPTHV 530
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541463|ref|XP_003539195.1| PREDICTED: high affinity nitrate transporter 2.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/518 (81%), Positives = 466/518 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MAD E +PG+SMHGV+ +E+ F SVASP++PTD A F LPVDSEHKAK+FK+FSLA+P
Sbjct: 1 MADIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKIFKLFSLANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVPIIRDNLNL K DIGNAG+ASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKGDIGNAGVASVSGSIFSRLTMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFLIMLSAPTVF M FV+ A GYIA RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
KIIGLVNGTAAGWGNMGGG TQL+ P +YELIRRAGATPFTAWRIAFF PG +HV+MGI
Sbjct: 181 SKIIGLVNGTAAGWGNMGGGATQLIMPMVYELIRRAGATPFTAWRIAFFVPGWMHVVMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGNL LQKKG+V DKF KVLWYAITNYRTW+F LLYG S+G+ELT DN
Sbjct: 241 LVLTLGQDLPDGNLGALQKKGNVAKDKFSKVLWYAITNYRTWVFALLYGYSMGVELTTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKLHTAG+IAA+FGMAN+ ARP GG SD+AAR FGMRGRLWNL+I+QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWNLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCI LGRA++LP+++L+MILFSI QAACGATFGIIPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++SR ST+TG+SLMG+MIVCCT PV LVHFPQWGSMFLP +KD KS E
Sbjct: 421 FGSGLTQLIFFSTSRFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVNKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGS 518
EYYY AEWNEEEKQ+GLH SLKFAENSRSERGKRV S
Sbjct: 481 EYYYTAEWNEEEKQKGLHQNSLKFAENSRSERGKRVAS 518
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543492|ref|XP_003540194.1| PREDICTED: high affinity nitrate transporter 2.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/530 (79%), Positives = 472/530 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MA+ E +PG+SMHGV+ +E+ F S+ASPI+PTD AKF LPVDSEHKAK+FK+FS+A+P
Sbjct: 1 MAEIEGSPGSSMHGVTGREQTFVASIASPIVPTDTTAKFALPVDSEHKAKIFKLFSMANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVPIIRDNLNL K+DIGNAG+ASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFLIMLSAPTVF M FV A GYI RF+IGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVKDAAGYIMVRFLIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
KIIGL NGTAAGWGNMGGG TQL+ P +YELIRRAGATPFTAWRIAFF PG +HVIMGI
Sbjct: 181 SKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGFMHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGNL LQKKGDV DKF KVLWYAITNYRTWIF LLYG S+G+ELT DN
Sbjct: 241 LVLTLGQDLPDGNLAALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKLHTAG+IAA+FGMAN+ ARP GG SD+AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCI LGRA++LP++IL+MILFS+ QAACGATFGIIPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAILAMILFSLGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++S+ STATG+SLMG+MIV CT PV++VHFPQWGSMFLP +KD KS E
Sbjct: 421 FGSGLTQLVFFSTSKFSTATGLSLMGVMIVACTLPVSVVHFPQWGSMFLPPSKDVNKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YY +EWNEEE+Q+GLH SLKFAENSRSERGKRV S PTP +ATP V
Sbjct: 481 EFYYTSEWNEEERQKGLHQQSLKFAENSRSERGKRVASAPTPPNATPTHV 530
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565393|ref|XP_002523687.1| nitrate transporter, putative [Ricinus communis] gi|223536991|gb|EEF38627.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/530 (79%), Positives = 471/530 (88%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
M D E +PG+SMHGV+ +E+ FAFSVASPI+PTD AKF LPVDSEHKAKVFK+FS A+P
Sbjct: 1 MGDIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFDLPVDSEHKAKVFKLFSFANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SF TCFVSTFAAAPLVPIIRDNLNL+K+DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFCTCFVSTFAAAPLVPIIRDNLNLVKSDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
+CDLLGPRYGCAFLIMLSAPTVF M FVSSA GYIA RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 ICDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
GKIIGLVNGTAAGWGNMGGG TQL+ P +Y+LI+R GATPFTAWRIAFF PG LHVIMGI
Sbjct: 181 GKIIGLVNGTAAGWGNMGGGATQLIMPLVYDLIQRVGATPFTAWRIAFFVPGLLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGNL LQKKGDV DKF KV+WYAITNYRTWIFVLLYG S+G+EL+ DN
Sbjct: 241 LVLTLGQDLPDGNLGALQKKGDVAKDKFSKVMWYAITNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKL TAG+IAATFGMAN+ ARP GG SD AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFNLKLQTAGIIAATFGMANLVARPFGGFASDYAARYFGMRGRLWVLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG FCI LGRA++LP+++L+MILFS+ QAACGATFG+IPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGAFCIWLGRANSLPIAVLAMILFSVGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF+++R ST TG+SLMG+MIV CT PV LV+FPQWG MFLP +KD+ KS E
Sbjct: 421 FGSGLTQLIFFSTTRFSTETGLSLMGVMIVACTLPVTLVYFPQWGGMFLPPSKDAMKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YY +EWNEEEKQ+GLH SLKFAENSRSERG R+ S PTP + TP V
Sbjct: 481 EFYYASEWNEEEKQKGLHQQSLKFAENSRSERGNRIASAPTPPNTTPNRV 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436528|ref|XP_002277127.1| PREDICTED: high affinity nitrate transporter 2.4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/530 (79%), Positives = 474/530 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
M++ E +PG+SMHGV+ +E+ FAFSVASPI+PTD A F LPVDSEHKAKVFKI S A+P
Sbjct: 1 MSNIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTSANFALPVDSEHKAKVFKILSFANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCFVSTFAAAPLVPIIRDNLNL K D+GNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKGDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAPTVF M FVSSA GYIA RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
GKIIGLVNGTAAGWGNMGGG TQL+ P +YE+I R G+TPFTAWRIAFF PG LHVIMGI
Sbjct: 181 GKIIGLVNGTAAGWGNMGGGATQLIMPILYEVICRVGSTPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGNL+TLQKKGDV DKF +V WYAITNYRTWIFVLLYG S+G+EL+IDN
Sbjct: 241 LVLTLGQDLPDGNLSTLQKKGDVSRDKFSRVFWYAITNYRTWIFVLLYGYSMGVELSIDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRFNLKLHTAG+IAATFGMAN+ ARP GG SD+A R FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAATFGMANLVARPFGGYSSDLAGRRFGMRGRLWTLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCI LGRA++L +++L+M+LFS+ QAACGATFGI+PFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLSIAVLAMMLFSVGAQAACGATFGIVPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF+SS+ STATG+SLMG MIV CT PV LVHFPQWGSMFLP +KD K E
Sbjct: 421 FGSGLTQLVFFSSSKFSTATGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVVKGTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YY +EWNEEEKQ+G+H GSLKFAENSRSERG+RV S PTP ++TP+ V
Sbjct: 481 EHYYESEWNEEEKQKGMHQGSLKFAENSRSERGQRVASAPTPPNSTPSHV 530
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|223712778|gb|ACN22072.1| Rehd high-affinity nitrate transporter NRT2.1 [Malus hupehensis] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/530 (78%), Positives = 472/530 (89%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MAD+E PG+SMHGV+ +E+AFAFSVASPI+PTD AKF LPVDSEHKAKVFK+FSLA+P
Sbjct: 1 MADSEGEPGSSMHGVTGREQAFAFSVASPIVPTDTTAKFDLPVDSEHKAKVFKLFSLANP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SFFTCF+STFAAAPLVPIIRDN+NL K DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFFTCFISTFAAAPLVPIIRDNINLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDL+GPRYGCAFLIMLSAPTVF M FV A GYIA RFMIGFSLATFVSCQYWMSTMFN
Sbjct: 121 VCDLIGPRYGCAFLIMLSAPTVFCMSFVGDAGGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
KII LVNGTAAGWGNMGGG TQLL P ++++I R GATPFTAWRIAFF PG H+I GI
Sbjct: 181 SKIIRLVNGTAAGWGNMGGGATQLLMPLMFDIIGRCGATPFTAWRIAFFIPGWFHIITGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
+VLTLGQDLPDGNL LQKKG+V D+F KVLWYA+TNYRTWIFVLLYG S+G+EL+IDN
Sbjct: 241 MVLTLGQDLPDGNLGALQKKGEVAKDQFSKVLWYAVTNYRTWIFVLLYGYSMGVELSIDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYF+DRF+LKLH AG+IAA+FGMAN ARP GG SD+A R FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFYDRFDLKLHLAGIIAASFGMANFAARPFGGWASDVAGRYFGMRGRLWTLWILQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG+FCICLGRA++LPL++L+MILFSI QAACGATFG+IPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGVFCICLGRANSLPLAVLAMILFSIGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++S STA+G+SLMG+MIVCCT PV LVHFPQWG MFLPA+KD +KS E
Sbjct: 421 FGSGLTQLVFFSTSAFSTASGLSLMGVMIVCCTLPVTLVHFPQWGGMFLPASKDVDKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATPAPV 530
E+YY AEW+E EKQ+GLH GSLKFAENSRSERG+RV S PTP + TP+ V
Sbjct: 481 EFYYAAEWSEAEKQKGLHQGSLKFAENSRSERGRRVASVPTPPNTTPSHV 530
|
Source: Malus hupehensis Species: Malus hupehensis Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 530 | ||||||
| TAIR|locus:2159280 | 527 | NRT2.4 "nitrate transporter 2. | 0.984 | 0.990 | 0.733 | 2e-214 | |
| TAIR|locus:2205190 | 530 | NRT2:1 "AT1G08090" [Arabidopsi | 0.994 | 0.994 | 0.713 | 1.5e-209 | |
| TAIR|locus:2159290 | 539 | NRT2.3 "AT5G60780" [Arabidopsi | 0.998 | 0.981 | 0.689 | 9.4e-201 | |
| TAIR|locus:2075909 | 542 | NRT2.6 "high affinity nitrate | 0.998 | 0.976 | 0.674 | 2.9e-199 | |
| TAIR|locus:2205195 | 522 | NRT2.2 "nitrate transporter 2. | 0.967 | 0.982 | 0.682 | 9.2e-194 | |
| TAIR|locus:2010391 | 502 | NRT2.5 "nitrate transporter2.5 | 0.907 | 0.958 | 0.569 | 9.8e-151 | |
| TAIR|locus:2222652 | 493 | NRT2.7 "high affinity nitrate | 0.866 | 0.931 | 0.465 | 9e-109 | |
| ASPGD|ASPL0000056693 | 507 | crnA [Emericella nidulans (tax | 0.390 | 0.408 | 0.322 | 3.8e-38 | |
| ASPGD|ASPL0000060467 | 497 | nrtB [Emericella nidulans (tax | 0.384 | 0.410 | 0.298 | 3.5e-37 | |
| UNIPROTKB|Q47UD4 | 493 | narK "Nitrate permease" [Colwe | 0.305 | 0.328 | 0.291 | 1.9e-25 |
| TAIR|locus:2159280 NRT2.4 "nitrate transporter 2.4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2072 (734.4 bits), Expect = 2.0e-214, P = 2.0e-214
Identities = 383/522 (73%), Positives = 442/522 (84%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
MAD PG+SMHGV+ +E+++AFSV SP +P+D AKF LPVD+EHKAKVFK+ S +P
Sbjct: 1 MADGFGEPGSSMHGVTGREQSYAFSVESPAVPSDSSAKFSLPVDTEHKAKVFKLLSFEAP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHL+W+SFFTCF+STFAAAPLVPIIRDNLNL + D+GNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAPTVFSM FV A GYI RFMIGF LATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
G+IIGLV +TQLL P +YE+IRR G+T FTAWR+AFF PG +H+IMGI
Sbjct: 181 GQIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLPDGN +TL+KKG V DKF KVLWYAITNYRTW+FVLLYG S+G+ELT DN
Sbjct: 241 LVLTLGQDLPDGNRSTLEKKGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYFFDRF+LKLHTAG+IAA+FGMAN FARP+GG SD+AAR FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGIIAASFGMANFFARPIGGWASDIAARRFGMRGRLWTLWIIQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
LGG FC+ LGRA+TLP +++ MILFS+ QAACGATF IIPFISRRSLG+ISGLTGAGGN
Sbjct: 361 LGGFFCLWLGRATTLPTAVVFMILFSLGAQAACGATFAIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++S ST G++ MG+MI+ CT PV LVHFPQWGSMFLP+T+D KS E
Sbjct: 421 FGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTEDEVKSTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTP 522
EYYY EW E EK++G+H GSLKFA NSRSERG+RV S P+P
Sbjct: 481 EYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRVASAPSP 522
|
|
| TAIR|locus:2205190 NRT2:1 "AT1G08090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2026 (718.2 bits), Expect = 1.5e-209, P = 1.5e-209
Identities = 376/527 (71%), Positives = 436/527 (82%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
M D+ PG+SMHGV+ +E++FAFSV SPI+ TD AKF LPVD+EHKA VFK+FS A P
Sbjct: 1 MGDSTGEPGSSMHGVTGREQSFAFSVQSPIVHTDKTAKFDLPVDTEHKATVFKLFSFAKP 60
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SF TCFVSTFAAAPLVPIIR+NLNL K DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 61 HMRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAPTVFSM FVS A G+I RFMIGF LATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
+IIGLV ITQLL P +YE+IRR G+T FTAWRIAFF PG LH+IMGI
Sbjct: 181 SQIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGI 240
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVL LGQDLPDGN TL+K G+V DKF K+LWYA+TNYRTWIFVLLYG S+G+EL+ DN
Sbjct: 241 LVLNLGQDLPDGNRATLEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYFFDRF+LKLHTAG+IAA FGMAN FARP GG SD AA+ FGMRGRLW L+I+QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGLIAACFGMANFFARPAGGYASDFAAKYFGMRGRLWTLWIIQT 360
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
GG+FC+ LGRA+TL ++++M+LFS+ QAACGATF I+PF+SRR+LG+ISGLTGAGGN
Sbjct: 361 AGGLFCVWLGRANTLVTAVVAMVLFSMGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 420
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQLLFF++S +T G++ MG+MIV CT PV LVHFPQWGSMFLP + D K E
Sbjct: 421 FGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPSTDPVKGTE 480
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATP 527
+YYG+EWNE+EKQ+ +H GSL+FAEN++SE G+RV S TP TP
Sbjct: 481 AHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGRRVRSAATPPENTP 527
|
|
| TAIR|locus:2159290 NRT2.3 "AT5G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
Identities = 368/534 (68%), Positives = 431/534 (80%)
Query: 2 ADTENTPGNSMHGVSAKEKAFAFSV-ASP--IMPTDPIAKFKLPVDSEHKAKVFKIFSLA 58
++ E + G S+HGV+A+E+ F+FSV AS + DP AKF LPVDSEH+AKVF S A
Sbjct: 6 SNEEGSIGTSLHGVTAREQVFSFSVDASSQTVQSDDPTAKFALPVDSEHRAKVFNPLSFA 65
Query: 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVM 118
PHM FHL WLSFFTCF+STFAAAPLVPIIRDNL+L KTDIGNAG+ASVSG+IFSRL M
Sbjct: 66 KPHMRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAM 125
Query: 119 GAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTM 178
GAVCDLLG RYG AF +ML+APTVFSM FV GY+ RFMIGF LATFVSCQYW S M
Sbjct: 126 GAVCDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVM 185
Query: 179 FNGKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238
FNGKIIGLV +TQLL P ++ +I+ AGATPF AWRIAFF PG L V+M
Sbjct: 186 FNGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVM 245
Query: 239 GILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298
GILVL+LGQDLPDGNL+TLQK G V DKF KV W+A+ NYRTWI +LYG S+GIELTI
Sbjct: 246 GILVLSLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFVLYGSSMGIELTI 305
Query: 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358
+NVI+ YF+DRFNLKL TAG++AA+FGMAN ARP GG SD+AAR FGMRGRLW L+I
Sbjct: 306 NNVISGYFYDRFNLKLQTAGIVAASFGMANFIARPFGGYASDVAARVFGMRGRLWTLWIF 365
Query: 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAG 418
QT+G +FCI LGRAS+LP++IL+M+LFSI TQAACGA FG+ PF+SRRSLG+ISGLTGAG
Sbjct: 366 QTVGALFCIWLGRASSLPIAILAMMLFSIGTQAACGALFGVAPFVSRRSLGLISGLTGAG 425
Query: 419 GNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKS 478
GNFGSGLTQLLFF+S+R STA G+SLMG+M V CT PVA +HFPQWGSMFL + D E+S
Sbjct: 426 GNFGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPSTDGERS 485
Query: 479 KEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVG--SDPTPISATPAPV 530
+EEYYYG+EW E EKQ+GLH GS+KFAENSRSERG++V + PTP + TP+ V
Sbjct: 486 QEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGRKVALANIPTPENGTPSHV 539
|
|
| TAIR|locus:2075909 NRT2.6 "high affinity nitrate transporter 2.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
Identities = 362/537 (67%), Positives = 431/537 (80%)
Query: 2 ADTENTPGNSMHGVSAKEKAFAFSV------ASPIMPTDPIAKFKLPVDSEHKAKVFKIF 55
++ + + G S+HGV+A+E+ F+FSV + + DP AKF LPVDSEH+AKVFK
Sbjct: 6 SNEDGSIGTSLHGVTAREQVFSFSVQEDVPSSQAVRTNDPTAKFALPVDSEHRAKVFKPL 65
Query: 56 SLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSR 115
S A PHM FHL W+SFFTCF+STFAAAPLVP+IRDNL+L KTDIGNAG+ASVSG+IFSR
Sbjct: 66 SFAKPHMRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVSGAIFSR 125
Query: 116 LVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWM 175
L MGAVCDLLG RYG AF +ML+AP VFSM FV+ A Y+A RFMIGF LATFVSCQYW
Sbjct: 126 LAMGAVCDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFVSCQYWT 185
Query: 176 STMFNGKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235
S MF GKIIGLV +TQLL P ++ +I+ GATPFTAWR AFF PG L
Sbjct: 186 SVMFTGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFFIPGILQ 245
Query: 236 VIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295
++MGILVLTLGQDLPDGNL+TLQK G V DKF KV W+A+ NYRTWI +LYG S+G+E
Sbjct: 246 IVMGILVLTLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFMLYGFSMGVE 305
Query: 296 LTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL 355
LTI+NVI+ YF+DRFNL LHTAG+IAA+FGMAN FARP GG SD+AAR FGMRGRLW L
Sbjct: 306 LTINNVISGYFYDRFNLTLHTAGIIAASFGMANFFARPFGGYASDVAARLFGMRGRLWIL 365
Query: 356 YIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLT 415
+I+QT+G +FCI LGRAS+LP++IL+M+LFS+ TQAACGA FG+ PF+SRRSLG+ISGLT
Sbjct: 366 WILQTVGALFCIWLGRASSLPIAILAMMLFSMGTQAACGALFGVAPFVSRRSLGLISGLT 425
Query: 416 GAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDS 475
GAGGNFGSG+TQLLFF+SSR STA G+SLMG+M V C+ PVA +HFPQWGSMFL ++D
Sbjct: 426 GAGGNFGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQDG 485
Query: 476 EKSKEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKR--VGSDPTPISATPAPV 530
EKSKEE+YYGAEW EEEK GLH GS+KFAENSRSERG++ + PTP + +PA V
Sbjct: 486 EKSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGRKAMLADIPTPETGSPAHV 542
|
|
| TAIR|locus:2205195 NRT2.2 "nitrate transporter 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1877 (665.8 bits), Expect = 9.2e-194, P = 9.2e-194
Identities = 352/516 (68%), Positives = 419/516 (81%)
Query: 1 MADTENTPGNSMHGVSAKEKAFAFSVASPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASP 60
M T+ PG+SMHGV+ +E+++AFSV PT+ K+ LPVD+E KA VFK+FS A P
Sbjct: 1 MGSTDE-PGSSMHGVTGREQSYAFSVDGS-EPTNTKKKYNLPVDAEDKATVFKLFSFAKP 58
Query: 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGA 120
HM TFHLSW+SF TCFVSTFAAAPL+PIIR+NLNL K DIGNAG+ASVSGSIFSRLVMGA
Sbjct: 59 HMRTFHLSWISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGA 118
Query: 121 VCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFN 180
VCDLLGPRYGCAFL+MLSAPTVFSM FVS A G+I RFMIGF LATFVSCQYWMSTMFN
Sbjct: 119 VCDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFN 178
Query: 181 GKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240
+IIGLV ITQLL P +YE+IRR G+T FTAWRIAFF PG LH+IMGI
Sbjct: 179 SQIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGI 238
Query: 241 LVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300
LVLTLGQDLP GN ++K G+V DKF K+LWYA+TNYRTWIFVLLYG S+G+EL+ DN
Sbjct: 239 LVLTLGQDLPGGNRAAMEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 298
Query: 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360
VIAEYFFDRF+LKLHTAG+IAA FGMAN FARP GG SD+AA+ FGMRGRLW L+I+QT
Sbjct: 299 VIAEYFFDRFHLKLHTAGIIAACFGMANFFARPAGGWASDIAAKRFGMRGRLWTLWIIQT 358
Query: 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGN 420
GG+FC+ LGRA+TL +++SM+LFS+ QAACGATF I+PF+SRR+LG+ISGLTGAGGN
Sbjct: 359 SGGLFCVWLGRANTLVTAVVSMVLFSLGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 418
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
FGSGLTQL+FF++SR +T G++ MG+MIV CT PV L+HFPQWGSMF P + DS + E
Sbjct: 419 FGSGLTQLVFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSNDSVDATE 478
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRV 516
YY G E+++EE+Q G+H S FA+ +++E G V
Sbjct: 479 HYYVG-EYSKEEQQIGMHLKSKLFADGAKTEGGSSV 513
|
|
| TAIR|locus:2010391 NRT2.5 "nitrate transporter2.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1471 (522.9 bits), Expect = 9.8e-151, P = 9.8e-151
Identities = 275/483 (56%), Positives = 345/483 (71%)
Query: 38 KFKLPVDSEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIK 97
+F LPVD+E+KA F++FS+A PHM FHLSW FF CFVSTFAA PL+P+IR+NLNL
Sbjct: 20 RFALPVDAENKATTFRLFSVAKPHMRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTA 79
Query: 98 TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAA 157
TDIGNAGIASVSG++F+R+VMG CDL GPR A L + +AP V+ + S G+I
Sbjct: 80 TDIGNAGIASVSGAVFARIVMGTACDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMV 139
Query: 158 RFMIGFSLATFVSCQYWMSTMFNGKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAG 217
RF GFSLATFVS Q+WMS+MF+G ++G TQL+ P ++ LIR G
Sbjct: 140 RFFAGFSLATFVSTQFWMSSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMG 199
Query: 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAIT 277
AT FTAWRIAFF PG + VL GQDLPDG+ + K G+ D KV+ I
Sbjct: 200 ATKFTAWRIAFFIPGLFQTLSAFAVLLFGQDLPDGDYWAMHKSGEREKDDVGKVISNGIK 259
Query: 278 NYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGL 337
NYR WI L YG G+ELTIDN+IAEYFFDRF+LKL TAG+IAA+FG+AN FARP GG+
Sbjct: 260 NYRGWITALAYGYCFGVELTIDNIIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGI 319
Query: 338 MSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATF 397
SD +R FGMRGRLW +IVQT GG+ C CLG+ S+L +SI+ M++FS+ QAACG TF
Sbjct: 320 FSDFMSRRFGMRGRLWAWWIVQTSGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTF 379
Query: 398 GIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVA 457
G++PFISRRSLGV+SG+TGAGGN G+ LTQL+FF S ++ TGI+LMG+M + C+ P+
Sbjct: 380 GVVPFISRRSLGVVSGMTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPIC 439
Query: 458 LVHFPQWGSMFLPATKDSEKSKEEYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVG 517
L++FPQWG MF + S+K EE YY AEWN+EEK++ LH GS KFAE S SERG+
Sbjct: 440 LIYFPQWGGMFCGPS--SKKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRATT 497
Query: 518 SDP 520
+ P
Sbjct: 498 THP 500
|
|
| TAIR|locus:2222652 NRT2.7 "high affinity nitrate transporter 2.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
Identities = 222/477 (46%), Positives = 298/477 (62%)
Query: 41 LPVDSEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDI 100
+PVDS+ +A VF+ FSL+SPH FHL+WLS F+CF STF+ PLVP+I +LNL + +
Sbjct: 18 IPVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTV 77
Query: 101 GNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFM 160
AGIAS +GSIFSRL MG +CDL+GPR A L L+AP + S VSS +I RF
Sbjct: 78 SAAGIASFAGSIFSRLAMGPLCDLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFF 137
Query: 161 IGFSLATFVSCQYWMSTMFNGKIIGLVXXXXXXXXXXXXXITQLLTPFIYELIRRAGATP 220
+GFSLA FV+ QYWMS+MF+G +IGL I+QLL P IY I A P
Sbjct: 138 VGFSLANFVANQYWMSSMFSGNVIGLANGVSAGWANVGAGISQLLMPLIYSTI--AEFLP 195
Query: 221 -FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL-NTLQKKGDVPTDK----------- 267
AWR++F P V +LVL GQD P GN N+ Q K +P ++
Sbjct: 196 RAVAWRVSFVFPAIFQVTTAVLVLLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEEDERS 255
Query: 268 -FPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGM 326
F ++L + NYR WI LLYG S G+ELT DNVIA YF++RF + L AG IAA+FG+
Sbjct: 256 SFVEILIGGLGNYRAWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGI 315
Query: 327 ANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFS 386
+NI +RP GG++SD + FGMRGRLW L+IVQ++ G+ C+ LGR ++L SIL M +FS
Sbjct: 316 SNIASRPAGGMISDALGKRFGMRGRLWGLWIVQSVAGLLCVLLGRVNSLWGSILVMWVFS 375
Query: 387 ITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMG 446
+ QAA G FG++PF+S RSLGV++G+TG+GG G+ +TQ L F+ ISLMG
Sbjct: 376 VFVQAASGLVFGVVPFVSTRSLGVVAGITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMG 435
Query: 447 IMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKEEYYYGAEWNEEEKQRGLHHGSLK 503
+M V ++FPQWG M + SE+ E+ G +E+++ + GSL+
Sbjct: 436 LMTFVFALSVTSIYFPQWGGMCCGPSSSSEE--EDISRGLLVEDEDEEGKVVSGSLR 490
|
|
| ASPGD|ASPL0000056693 crnA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 68/211 (32%), Positives = 105/211 (49%)
Query: 45 SEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNA 103
+ KA + + + + F SW F F+S +A PL+ + IRD+L++ +T I N+
Sbjct: 16 NNRKALTIPVLNPFNTYGRVFFFSWFGFMLAFLSWYAFPPLLTVTIRDDLDMSQTQIANS 75
Query: 104 GIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIML-SAPTVFSMVFVSSARGYIAARFMIG 162
I ++ ++ RL+ G +CD GPR L+++ S PT + + V+S +G IA RF IG
Sbjct: 76 NIIALLATLLVRLICGPLCDRFGPRLVFIGLLLVGSIPTAMAGL-VTSPQGLIALRFFIG 134
Query: 163 FSLATFVSCQYWMSTMFNGKIIGLVXXXXXXXXXXXXXITQLLTPFIYE-LIRRAGATPF 221
TFV CQ W + F+ I+G IT + P I++ LIR G
Sbjct: 135 ILGGTFVPCQVWCTGFFDKSIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAH 194
Query: 222 TAWRIAFFAPGCLHVIMGILVLTLGQDLPDG 252
AWR+A+ P L V + +L D P G
Sbjct: 195 KAWRVAYIVPFILIVAAALGMLFTCDDTPTG 225
|
|
| ASPGD|ASPL0000060467 nrtB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 62/208 (29%), Positives = 104/208 (50%)
Query: 48 KAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIA 106
KA+ + + + F SW+ F F+S +A PL+ + I+ +L++ + D+ N+ I
Sbjct: 22 KARSIPVLNPFDLYGRVFFFSWIGFLVAFLSWYAFPPLLSVTIKKDLHMSQDDVANSNIV 81
Query: 107 SVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA-PTVFSMVFVSSARGYIAARFMIGFSL 165
++ G+ R + G +CD GPR L++ A PT + + V++ +G IA RF +G
Sbjct: 82 ALLGTFVMRFIAGPLCDRFGPRLVFVGLLICGAVPTAMAGL-VTTPQGLIALRFFVGILG 140
Query: 166 ATFVSCQYWMSTMFNGKIIGLVXXXXXXXXXXXXXITQLLTPFIYE-LIRRAGATPFTAW 224
ATFV CQ W + F+ I+G IT + P IY+ + G TP AW
Sbjct: 141 ATFVPCQVWCTGFFDKNIVGTANSLAGGFGNAGGGITYFVMPAIYDSFVHDRGLTPHKAW 200
Query: 225 RIAFFAPGCLHVIMGILVLTLGQDLPDG 252
R+++ P + V + + +L D P G
Sbjct: 201 RVSYIVPFIIIVSIALAMLFTCPDTPTG 228
|
|
| UNIPROTKB|Q47UD4 narK "Nitrate permease" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 49/168 (29%), Positives = 86/168 (51%)
Query: 256 TLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLH 315
T Q G + ++ P++ Y + +LY + G EL + +++ +F + F+L +
Sbjct: 277 TYQVNGHLFKEEVPEIHQYQFKQVA--VLNVLYFATFGSELAVVSMLPLFFAETFSLDMV 334
Query: 316 TAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTL 375
AG++A+ + N+ +RP GG +SD +G + L L LG + + + L
Sbjct: 335 YAGMLASLYAFMNLMSRPGGGWLSDK----YGRKKTLLILTAGLALGYLAMALIDSSWPL 390
Query: 376 PLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGS 423
L++++ + S QA GA F +P I RR G I+G+TGA GN G+
Sbjct: 391 VLAVITAMACSFFVQAGEGAVFAAVPLIKRRLTGQIAGMTGAYGNVGA 438
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FJH8 | NRT24_ARATH | No assigned EC number | 0.7586 | 0.9849 | 0.9905 | yes | no |
| Q9FJH7 | NRT23_ARATH | No assigned EC number | 0.7041 | 0.9981 | 0.9814 | no | no |
| O82811 | NRT21_ARATH | No assigned EC number | 0.7358 | 1.0 | 1.0 | no | no |
| Q9LMZ9 | NRT22_ARATH | No assigned EC number | 0.7076 | 0.9641 | 0.9789 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023230001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (531 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 530 | |||
| PLN00028 | 476 | PLN00028, PLN00028, nitrate transmembrane transpor | 0.0 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 4e-81 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 2e-42 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-13 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-08 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 2e-08 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 2e-07 | |
| PRK11273 | 452 | PRK11273, glpT, sn-glycerol-3-phosphate transporte | 4e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.004 |
| >gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Score = 847 bits (2190), Expect = 0.0
Identities = 346/479 (72%), Positives = 392/479 (81%), Gaps = 3/479 (0%)
Query: 28 SPIMPTDPIAKFKLPVDSEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVP 87
P P +KF LPVDSEHKA F++FS A PHM FHLSW+SFFTCFVSTFAAAPL+P
Sbjct: 1 QPASPDPKYSKFALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLP 60
Query: 88 IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF 147
IIRDNLNL K+DIGNAGIASVSGSIFSRL MG VCDL GPRYG AFL+ML+AP VF M
Sbjct: 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL 120
Query: 148 VSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTP 207
VSSA G+IA RF IGFSLATFVSCQYWMSTMFNGKI+G NG AAGWGN+GGG+TQLL P
Sbjct: 121 VSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180
Query: 208 FIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDK 267
++ LI+ AGA FTAWRIAFF PG LH+IMGILVLTLGQDLPDGN L+K G +P D
Sbjct: 181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDS 240
Query: 268 FPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMA 327
F KVL Y +TNYRTWI L YG S G+ELT+DN+IAEYF+DRF L L TAG IAA+FG+
Sbjct: 241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLM 300
Query: 328 NIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSI 387
N+FARP GG +SD+AAR FGMRGRLW L+IVQTLGG+FCI LGRA++L +I+ MILFSI
Sbjct: 301 NLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI 360
Query: 388 TTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGI 447
QAACGATFGI+PF+SRRSLGVISGLTGAGGN G+ LTQLLFFT S +ST TGISLMG+
Sbjct: 361 FVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGV 420
Query: 448 MIVCCTFPVALVHFPQWGSMFLPATKDSEKSKEEYYYGAEWNEEEKQRGLHHGSLKFAE 506
MI+ CT PVA +HFPQWG MF +KD+ EE YY +EW EEEK++GLH GSLKFAE
Sbjct: 421 MIIACTLPVAFIHFPQWGGMFFGPSKDAV---EEDYYASEWTEEEKEKGLHQGSLKFAE 476
|
Length = 476 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 4e-81
Identities = 121/369 (32%), Positives = 173/369 (46%), Gaps = 15/369 (4%)
Query: 64 TFHLSWLSFFTCFVSTFAAAPLVP-IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVC 122
SW FF F FA +PL +I+D+L L +GN V R+++G +
Sbjct: 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLV 61
Query: 123 DLLGPRYGCAF-LIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNG 181
D GPRY L++L+ P +++ + V S + R IG + +F SC W+S F
Sbjct: 62 DKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPK 121
Query: 182 KIIGLVNGTAAGWGNMGGGITQLLTP-FIYELIRRAGATPFTAWRIAF-FAPGCLHVIMG 239
KI G G AAGWGNMGGG+ Q + P I LI AG AW AF P + ++
Sbjct: 122 KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPA 181
Query: 240 ILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVL----WYAITNYRTWIFVLLYGMSLGIE 295
+L+ +G D P G T + + TWI LLY ++ G
Sbjct: 182 LLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSF 241
Query: 296 LTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL 355
L + ++ A +F D+F L TAG A+ G+ ARPLGG +SD R +
Sbjct: 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKLLM 296
Query: 356 YIVQTLGGIFCICLGRASTLPLS--ILSMILFSITTQAACGATFGIIPFISRRSLGVISG 413
+ G F + LG S L L+ I+ + + A G+TF ++P I RR+ G +SG
Sbjct: 297 SFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSG 356
Query: 414 LTGAGGNFG 422
L GA GN G
Sbjct: 357 LVGAIGNLG 365
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 93/406 (22%), Positives = 150/406 (36%), Gaps = 20/406 (4%)
Query: 51 VFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGN-AGIASVS 109
F LS L+F F+ +PL I+ + L + G I +
Sbjct: 2 AFWEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILV 61
Query: 110 GSIFSRLVMGAVCDLLGPRYGCAFLIMLSA-PTVFSMVFVS--SARGYIAARFMIGFSLA 166
G++ RL G + D G R ++L P + V+ S + ++G + A
Sbjct: 62 GALL-RLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120
Query: 167 TFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRI 226
+F S F + GL G AG GN+G + QL+ P + A A F AWR
Sbjct: 121 SFAVGMPNASFFFPKEKQGLALG-IAGAGNLGVAVAQLVAPLV------AVAFGFLAWRN 173
Query: 227 AFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVL 286
I +L D+P+ + + P L +N TW+ L
Sbjct: 174 VAGIYVVALAIAAVLAWLGMNDVPEHRAS--------VKPQLPAQLKAVFSNKDTWLLSL 225
Query: 287 LYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPF 346
LY + G + + Y +F L TAG+IA F + ARPLGG +SD
Sbjct: 226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR 285
Query: 347 GMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRR 406
+ + L +F G + + + + + G+ F +IP I +
Sbjct: 286 VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK 345
Query: 407 SLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCC 452
G ++G+ GA G G L F S + + + M ++
Sbjct: 346 ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYL 391
|
Length = 417 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 65/361 (18%), Positives = 121/361 (33%), Gaps = 19/361 (5%)
Query: 67 LSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG 126
L +F + L + ++L + T+IG A G ++ + G + D G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 127 PRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLA-TFVSCQYWMSTMFNGKIIG 185
R ++L A + ++F SS + R + G F + ++ F + G
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 186 LVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245
G + +G + LL + L WR AF L ++ +L L
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFG---------WRAAFLILAILALLAAVLAALL 171
Query: 246 GQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305
P + + P V + + +++LL + G
Sbjct: 172 LPRPPPESKRPKPAEE----APAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL 227
Query: 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIF 365
+ + L AG++ G+ R L G +SD G R RL ++ L +
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD----RLGRRRRLLLALLLLILAALG 283
Query: 366 CICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSG 424
L + +++++L A ++ + G SGL G+ G
Sbjct: 284 LALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
Query: 425 L 425
L
Sbjct: 344 L 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 77/395 (19%), Positives = 136/395 (34%), Gaps = 49/395 (12%)
Query: 67 LSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG 126
L +L FF + +P +P++ ++L L + G A G L+ G + D G
Sbjct: 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 127 PRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATF-VSCQYWMSTMFNGKIIG 185
R ++L A + F SS + RF++G + ++ F K G
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 186 LVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245
G + +G + LL + E WR F L +++ +L+L L
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAE---------SLGWRWLFLILAILGLLLALLLLFL 173
Query: 246 GQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305
+ + L + + + + Y
Sbjct: 174 LR--------------------------------LLLLLALAFFLLSFGYYGLLTYLPLY 201
Query: 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIF 365
+ L AG++ + FG+ I LGGL+SD R R L I L +
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR------RRLLLLIGLLLAALG 255
Query: 366 CICLGRASTLPLSILSMILFSITTQAACGATFGIIPFIS-RRSLGVISGLTGAGGNFGSG 424
+ L A +L L +++++L A A + ++ + G SGL G+ G
Sbjct: 256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA 315
Query: 425 LTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALV 459
L LL G+ L+ + + L+
Sbjct: 316 LGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 72/372 (19%), Positives = 123/372 (33%), Gaps = 53/372 (14%)
Query: 69 WLSFFTCFV--STFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG 126
++ + ++ FA A +P + + + L KTD+G + S+ VMG+V D
Sbjct: 1 FIGYAAYYLVRKNFALA--MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN 58
Query: 127 PRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSC----QYWMSTMFNG 181
PR ++L A F +S A + G + C W S G
Sbjct: 59 PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118
Query: 182 KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGIL 241
+ N + N+GGG+ L F +W F PG + +I+ ++
Sbjct: 119 TWVSFWNCSH----NVGGGLLPPLVLFGIAE--------LYSWHWVFIVPGIIAIIVSLI 166
Query: 242 VLTLGQDLPD--GNLNTLQKKGDVPTDKFPK----------VLWYAITNYRTWIFVLLYG 289
L +D P G + + P K L Y + N W L Y
Sbjct: 167 CFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYV 226
Query: 290 MSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMR 349
+ I + Y A + + + L G +SD + F R
Sbjct: 227 FVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD---KLFNGR 283
Query: 350 GRLWNLY----IVQTLGGIFC----------ICL---GRASTLPLSILSMILFSITTQAA 392
++ I+ +L + ICL G P ++ +I + + A
Sbjct: 284 RGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA 343
Query: 393 CGATFGIIPFIS 404
G G + F +
Sbjct: 344 AGTAAGFVGFFA 355
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 70/329 (21%), Positives = 118/329 (35%), Gaps = 54/329 (16%)
Query: 87 PIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV 146
P + ++ L KT +G G A S+ VMG + D PRY AF ++LSA
Sbjct: 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG 112
Query: 147 FVSSARGYIAARFMIGFSLATFVSCQY-----WMSTMFNGKIIGLVNGTAAGWGNMGGGI 201
F S + + G+ W S G + N + N+GG +
Sbjct: 113 FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH----NIGGAL 168
Query: 202 TQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLP-DGNLNTLQK- 259
L+ + WR AF+ PG + +I+ +++L L +D P L +++
Sbjct: 169 APLVALLAF-------FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEY 221
Query: 260 KGDVPTDKFP--------------------KVLWY-AITNYRTWIFVLLYGMSLGIELTI 298
+GD K++W A+ N V +Y + G I
Sbjct: 222 RGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALAN------VFVYVVRYG----I 271
Query: 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358
++ Y + L A + F +A + L G +SD +GR + ++
Sbjct: 272 NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL-----FKGRRGPMALI 326
Query: 359 QTLGGIFCICLGRASTLPLSILSMILFSI 387
L + L + +L IL I
Sbjct: 327 FMLLITASLVLYWLAPNGSYLLDAILLFI 355
|
Length = 448 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 45/225 (20%)
Query: 97 KTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIA 156
K ++G A A FS+ +MG+V D PR ++LSA + M FV A IA
Sbjct: 60 KGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIA 119
Query: 157 ARFMIGFSLATFV---------SCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTP 207
F++ F F + +W S G I+ + N N+GGGI LL
Sbjct: 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAH----NIGGGIPPLLVL 175
Query: 208 FIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDG-NLNTLQK-KGDVPT 265
G F W A + P +I+ + + +D P L +++ + D P
Sbjct: 176 L--------GMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPD 227
Query: 266 DKFP-------------------KVLWY-AITNYRTWIFVLLYGM 290
D K+LWY AI N ++++L YG+
Sbjct: 228 DYNEKAEQELTAKEIFMQYVLPNKLLWYIAIAN--VFVYLLRYGV 270
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 48/224 (21%)
Query: 101 GNAGIASVSGSI---FSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAA 157
G+ G A SI FS+ +MG+V D PR ++L+A + M FV A IA
Sbjct: 63 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 122
Query: 158 RFMIGFSLATFV---------SCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPF 208
F++ F F + +W S G I+ + N N+GGG+ LL F
Sbjct: 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH----NVGGGLPPLL--F 176
Query: 209 IYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDG-NLNTLQK-KGDVPTD 266
+ G F W A + P +++ + + +D P L +++ K D P D
Sbjct: 177 LL------GMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 230
Query: 267 K------------------FP-KVLWY-AITNYRTWIFVLLYGM 290
P K+LWY AI N ++++L YG+
Sbjct: 231 YNEKHEQELTAKQIFMQYVLPNKLLWYIAIAN--VFVYLLRYGI 272
|
Length = 452 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 68/371 (18%), Positives = 118/371 (31%), Gaps = 46/371 (12%)
Query: 86 VPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM 145
P+++++L L G A G + + G + D G R A I++
Sbjct: 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76
Query: 146 VFVSSARGYIAARFMIGFSLATFVSC-----QYWMSTMFNGKIIGLVNGTAAGWGNMGGG 200
F + R ++G + A F W + + N GG
Sbjct: 77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNS-----AQGLGG 131
Query: 201 ITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPD--------- 251
I + P + ++ W+ AF G L +I G+L L D P
Sbjct: 132 I--IGGPLVGWILIHFS------WQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEE 183
Query: 252 -----GNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYF 306
G L Q+ T K ++ + + R W L + Y
Sbjct: 184 KYIVVGGLLAEQQGKGPSTPKKYQI-KELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL 242
Query: 307 FDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFC 366
L + AG +A+ G+ LGG +SD+ R R +L + I
Sbjct: 243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLR------RGKSLVFARKTAIIAG 296
Query: 367 ICL------GRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGG 419
+ L +P + L+++ A + +I G+ GL + G
Sbjct: 297 LVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLG 356
Query: 420 NFGSGLTQLLF 430
N G + ++
Sbjct: 357 NLGGIVGPIVI 367
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 12/182 (6%)
Query: 67 LSWLSFFTCFVSTFAAAP-LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL 125
L L+FF + L +++ L L + G G I L+ G + D L
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 126 GPRYGC-AFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLA-TFVSCQYWMSTMFNGKI 183
G R ++L+A + + S + A ++GF L F + S + +
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 184 IGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243
G +G +G++GG + LL + + + F L ++ +L+L
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTG---------GYGGVFLILAALALLAALLLL 349
Query: 244 TL 245
L
Sbjct: 350 LL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 530 | |||
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.98 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.94 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.93 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.91 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.89 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.78 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.78 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.75 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.74 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.69 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.67 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.66 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.59 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.56 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.56 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.51 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.5 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.48 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.46 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.44 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.44 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.43 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.42 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.41 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.4 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.39 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.39 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.37 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.37 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.31 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.3 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.3 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.3 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.29 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.27 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.26 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.26 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.26 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.25 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.23 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.22 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.22 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.22 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.22 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.21 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.21 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.19 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.19 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.19 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.18 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.17 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.17 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.16 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.15 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.14 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.14 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.14 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.14 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.13 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.13 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.13 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.13 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.12 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.11 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.09 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.07 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.07 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.07 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.06 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.04 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.04 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.03 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.02 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.98 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.96 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.96 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.95 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.95 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.92 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.91 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.89 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.87 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.85 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.78 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.76 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.75 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.74 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.74 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.74 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.72 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.71 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.7 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.7 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.69 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.69 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.68 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.64 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.63 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.56 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.52 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.44 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.38 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.36 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.35 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.32 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.32 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.26 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.25 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.24 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.17 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.11 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 98.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.06 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.01 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.01 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.0 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.88 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.61 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.6 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.54 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.44 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.39 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.18 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.11 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.97 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.81 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.55 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.35 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.28 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.73 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.61 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.26 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.15 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.12 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.65 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.14 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.13 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 90.65 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.8 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 89.3 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 88.94 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 88.29 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 88.29 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 86.4 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 85.94 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 84.53 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 83.3 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 82.33 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 82.21 | |
| PF01810 | 191 | LysE: LysE type translocator; InterPro: IPR001123 | 81.9 |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=372.72 Aligned_cols=433 Identities=74% Similarity=1.265 Sum_probs=338.9
Q ss_pred CCCCcCCccccccCcccccccccccccCCcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHH
Q 037413 31 MPTDPIAKFKLPVDSEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSG 110 (530)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~ 110 (530)
++++..++++.|+|..++.+..+....++++++.+...++.++..+.......+..|.+.+++|++.++.+++.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~ 83 (476)
T PLN00028 4 SPDPKYSKFALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSG 83 (476)
T ss_pred CCCCCCcCCCCCcCcccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777778888888888888888888888999999999999999999999999999
Q ss_pred HHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhH
Q 037413 111 SIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGT 190 (530)
Q Consensus 111 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 190 (530)
+.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+.......++++++|+++|++++++
T Consensus 84 ~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~ 163 (476)
T PLN00028 84 SIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGI 163 (476)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988655566789999999999999999
Q ss_pred hhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhH
Q 037413 191 AAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPK 270 (530)
Q Consensus 191 ~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 270 (530)
.....++|..+++.+.+.+...+...+..+..|||+.|++.++++++.+++.+++.++.|+...++.+++.+.++.+..+
T Consensus 164 ~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 243 (476)
T PLN00028 164 AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSK 243 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHH
Confidence 98888899998888887776654322112234899999999999988888777776666654321111111112223345
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcc
Q 037413 271 VLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRG 350 (530)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~ 350 (530)
.+++.++++++|.+.+.+++.....+.+.+++|.|+.+.+|++..+++.+.++..++++++++++|+++||++||+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~ 323 (476)
T PLN00028 244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRG 323 (476)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcch
Confidence 56777889999988887777666667778889999988899999999999999999999999999999999998865555
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhh
Q 037413 351 RLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLF 430 (530)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 430 (530)
+.....+...+.++.++++....+.+.....+++++++.+...+..+++..++.++.+|++.|+.+..+++|++++|.+.
T Consensus 324 r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 324 RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHH
Confidence 55555555555555444444455555555556666777666667777777777889999999999999999999999887
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHhhhcc
Q 037413 431 FTSSRHSTATGISLMGIMIVCCTFPVALVHFPQ 463 (530)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (530)
+..+..++...+.+.+++.+++.++.+++..+.
T Consensus 404 ~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~ 436 (476)
T PLN00028 404 FTGSSYSTETGISLMGVMIIACTLPVAFIHFPQ 436 (476)
T ss_pred HhcCCccHhhHHHHHHHHHHHHHHHHHheeccc
Confidence 643344566777777777777766655555433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=320.56 Aligned_cols=389 Identities=19% Similarity=0.227 Sum_probs=322.8
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+.+++++...++++...++.+-.++...|.+.+|.++|.+|+|++.+++.+.|.++.++.|.++||.+.|+.+.+++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 44677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHH--HHHHHHHHh
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLT--PFIYELIRR 215 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~l~~~~~~ 215 (530)
++..++++++++.+.+.++.++.|..+|. +|++...+..|++++|||+..++++...|+|..+.+.+. +.+....
T Consensus 105 ai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-- 182 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-- 182 (448)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc--
Confidence 99999999999999999999999999995 999999999999999999999999999999999888776 3433332
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc---------ccccc-CCCCCC--CChh-HHHHHhhhchhHH
Q 037413 216 AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL---------NTLQK-KGDVPT--DKFP-KVLWYAITNYRTW 282 (530)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~---------~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~ 282 (530)
+||..|++.++++++++++.++..+|+|++.- +..+. ++++++ -+.+ ...+.+++||.+|
T Consensus 183 -------~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW 255 (448)
T COG2271 183 -------GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIW 255 (448)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHH
Confidence 99999999999999999999999999998641 11111 111111 1223 3457789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 283 IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
.+++..++.+..-+++..|.|.|+.|..|++..+++...+.+-.++++|.++.||++||+-+.+ |....+++++..
T Consensus 256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr----R~p~~~i~~~~i 331 (448)
T COG2271 256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR----RGPMALIFMLLI 331 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc----cchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986431 224444555555
Q ss_pred HHHHHHhhcCC--cHHHHHHHHHHHHHHhhhhhcccc-ccccccccccccchhhhhhhhhhH-HHHhhhhhhhh-ccCCC
Q 037413 363 GIFCICLGRAS--TLPLSILSMILFSITTQAACGATF-GIIPFISRRSLGVISGLTGAGGNF-GSGLTQLLFFT-SSRHS 437 (530)
Q Consensus 363 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~~~-~~~~~ 437 (530)
.+++..+...+ +.+...+++++.|+...+..-..- ..++..|++..|++.|+...++++ |...+....+. .|.++
T Consensus 332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 55555555444 456777777777777655542222 225567778999999999999998 77888888777 56778
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 037413 438 TATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
+...+..+.+..+++.++.+...
T Consensus 412 W~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 88888877777766666555554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=295.96 Aligned_cols=372 Identities=15% Similarity=0.122 Sum_probs=310.3
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
..+..++.+.++.|......+....++|++.+|+|+|..+.|++.++|.+++++++++...+.||+.||++++..+.++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 35666777778888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 140 PTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
++.+++++++||+.++++|++.|+..|. ++....+..+..|+++|++++++...+..++.++|..++.++.+.+
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~----- 164 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF----- 164 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-----
Confidence 9999999999999999999999999996 7888999999999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
|||++|++.+.++++..+..+..+| |.+. .+++........+.+|+|+++...+..++.+...+..
T Consensus 165 ----GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--------~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ 230 (394)
T COG2814 165 ----GWRATFLAIAVLALLALLLLWKLLP--PSEI--------SGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFAL 230 (394)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhCC--CccC--------CCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhh
Confidence 9999999999999999999888887 2211 1111122244567889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh-cCCcHHH
Q 037413 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG-RASTLPL 377 (530)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 377 (530)
.+|+.+++++..|++....++....++++.++|.+++|++.|| +.|+ .+.....+..+.++.+. ...+.+.
T Consensus 231 ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-------~l~~~~~l~a~~~l~l~~~~~~~~~ 302 (394)
T COG2814 231 YTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-------ALIAALLLLALALLALTFTGASPAL 302 (394)
T ss_pred HHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-------HHHHHHHHHHHHHHHHHHhcchHHH
Confidence 9999999999999999999999999999999999999999999 5542 44444444444444443 3445555
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHHHH
Q 037413 378 SILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTFPV 456 (530)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 456 (530)
.....+++++.................|+.+..+.+++....|+|..+|..++|. .+.+++....+..+...+++.++.
T Consensus 303 ~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 303 ALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 5666666666655444444444445668999999999999999999999999888 666777766766666666555544
Q ss_pred HH
Q 037413 457 AL 458 (530)
Q Consensus 457 ~~ 458 (530)
..
T Consensus 383 ~~ 384 (394)
T COG2814 383 LL 384 (394)
T ss_pred HH
Confidence 33
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=322.14 Aligned_cols=365 Identities=16% Similarity=0.150 Sum_probs=279.3
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+..+..+..+++.++..++++..+++..|.+.+++|++.++.|++.+++.+++.+++++.|+++||+|||+++.++++++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 44667788889999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHh-----hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHH
Q 037413 139 APTVFSMVF-----VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYEL 212 (530)
Q Consensus 139 ~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 212 (530)
+++.++.++ ++|++.+++.|+++|++.+. .+...+++++|+|+++||+++|++..+.++|.++++.+...+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 887776665 58999999999999999995 788889999999999999999999999999998888776555443
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc-----c----CCC-C--CCCChhHHH-HHhhhch
Q 037413 213 IRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQ-----K----KGD-V--PTDKFPKVL-WYAITNY 279 (530)
Q Consensus 213 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~----~~~-~--~~~~~~~~~-~~~~~~~ 279 (530)
.. ..+||..|.+.+++.++.+++.+++.++.|++.....+ + +++ . ++.+..+.+ ++.+++|
T Consensus 185 ~~------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (467)
T PRK09556 185 FF------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNP 258 (467)
T ss_pred hc------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcCh
Confidence 20 11699999999999888888888877777764211000 0 000 0 011112222 3478999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHH
Q 037413 280 RTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQ 359 (530)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~ 359 (530)
.+|...+..++.+..+.....|+|.|+++.+|++..+++...+...++.+++.+++|+++||+++|+. .... ...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~----~~~~-~~~ 333 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA----LVAC-IAL 333 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----HHHH-HHH
Confidence 99999998888888888888999999999999999999999988999999999999999999998741 1111 111
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhH-HHHhhhhhhhh-cc
Q 037413 360 TLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNF-GSGLTQLLFFT-SS 434 (530)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~~~-~~ 434 (530)
......++.+...++.+...+..++.|++........... .+..|++.+|++.|+.+...++ |++++|.+.|. .+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 334 ALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 1111122222333445444455555554432222222233 4677888999999999999997 66999999888 44
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=312.36 Aligned_cols=379 Identities=15% Similarity=0.143 Sum_probs=285.2
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
|.+|+.+..+++.++++++++...+...|.+++|+|++.+++|++.+++.+++.+++++.|++.||+|||+++..+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 34788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcC
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAG 217 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 217 (530)
+++.+++++++|++.+++.|+++|++.+. .+....++.|++|+++|++++++++.+.++|..+++.+++.+... .+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~ 160 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL---DG 160 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC
Confidence 99999999999999999999999999996 677778999999999999999999999999998888877766531 00
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc---c-ccc-------cCC-----CC---CCC--ChhHHHHHhh
Q 037413 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL---N-TLQ-------KKG-----DV---PTD--KFPKVLWYAI 276 (530)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~---~-~~~-------~~~-----~~---~~~--~~~~~~~~~~ 276 (530)
..+..|||+.|++.++++++.+++.++++||.|++.+ + +.+ .+. .+ .+. .....++.+
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI- 239 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHh-
Confidence 1122399999999999988888888888888886532 0 000 000 00 000 111223333
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHH
Q 037413 277 TNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDR-FNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL 355 (530)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~ 355 (530)
++|.+|...+.+++....++.+.+|+|.|+++. .|++..+++.+.....++.+++.++.|+++||+++|+ ...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~------~~~ 313 (412)
T TIGR02332 240 FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK------HHT 313 (412)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH------HHH
Confidence 458888888888888888888899999999873 4778888999999999999999999999999999763 112
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-c
Q 037413 356 YIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-S 433 (530)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~ 433 (530)
.....+..+.+++.....+....+..+.+.+++.....+..+.... ..+++.++++.|+.+...++|++++|.+.+. .
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 2222222222222222223232222233333333333333334433 5678899999999999999999999999887 4
Q ss_pred cCC-CcchhHHHHHH
Q 037413 434 SRH-STATGISLMGI 447 (530)
Q Consensus 434 ~~~-~~~~~~~~~~~ 447 (530)
+.. ++...++..++
T Consensus 394 ~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 394 DATGSFNSGLWFVAA 408 (412)
T ss_pred ccCCCCchhHHHHHH
Confidence 443 35555554433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=290.54 Aligned_cols=370 Identities=22% Similarity=0.277 Sum_probs=316.2
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+.+++.+.+.++.+.++++.++.++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 139 APTVFSMVFVS---SARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 139 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
.+-.+..+++. ++|++++++++.|++.+.+......++.||||+++|.++|++. .+|+|..+..+++|.+....
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-- 166 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-- 166 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH--
Confidence 99999999874 4569999999999999999999999999999999999999998 99999999999999999888
Q ss_pred cCCCCCCc---hhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChh-HHHHHhhhchhHHHHHHHHHHH
Q 037413 216 AGATPFTA---WRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFP-KVLWYAITNYRTWIFVLLYGMS 291 (530)
Q Consensus 216 ~~~~~~~~---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (530)
+ ||....+..+..++..++.++..+|.|+.+.. .++.. ..++.++++++.|.+++.++..
T Consensus 167 -------g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~---------~~~~~~~~~~~v~~~~~~W~lsllY~~t 230 (417)
T COG2223 167 -------GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS---------VKPQLPAQLKAVFSNKDTWLLSLLYFAT 230 (417)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc---------ccccchhHHHHHhcCcchHHHHHHHHHH
Confidence 7 99999999999999999999999998885211 11111 5677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc
Q 037413 292 LGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR 371 (530)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
++.+.++..++|.|+++++|.++.+++.+.....+.+.+.++++|+++||+|.++ ...+.+..++++..+...
T Consensus 231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-------v~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-------VTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-------HHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999884 333433343333333222
Q ss_pred C-------CcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCC-CcchhH
Q 037413 372 A-------STLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRH-STATGI 442 (530)
Q Consensus 372 ~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~-~~~~~~ 442 (530)
. .+.......++...+..+...+..+.+++...+++.|.+.|+...++.+|++.-|..++. .+.. .+...+
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f 383 (417)
T COG2223 304 FLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAF 383 (417)
T ss_pred cccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHH
Confidence 2 345556666677788888899999999999999999999999999999999999999877 3333 344455
Q ss_pred HHHHHHHHHHHH
Q 037413 443 SLMGIMIVCCTF 454 (530)
Q Consensus 443 ~~~~~~~~~~~~ 454 (530)
+.+..+.+++.+
T Consensus 384 ~~~~~~~~~a~v 395 (417)
T COG2223 384 MLLLAFYLVALV 395 (417)
T ss_pred HHHHHHHHHHHH
Confidence 554444444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=308.45 Aligned_cols=382 Identities=14% Similarity=0.135 Sum_probs=283.5
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
++..+...++.++..+++...++..+|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 44566667788888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.++++++++++.+++.|++.|++.|. ++....++.+++|+++|++++++.+.+.++|..+++.+.+.+.+..
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~------ 174 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY------ 174 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 999999999999999999999999995 7888899999999999999999999999999999988888776654
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc------ccc--C-CC--CCCCChhHHHH-HhhhchhHHHHHHH
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNT------LQK--K-GD--VPTDKFPKVLW-YAITNYRTWIFVLL 287 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~--~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~~ 287 (530)
|||+.|++.+++.++.+++.++.++|.|+..... .+. . ++ ..+.+..+.++ ..+++|.+|.+.+.
T Consensus 175 ---gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (434)
T PRK11663 175 ---GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFS 251 (434)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHH
Confidence 9999999999887777666666667765432100 000 0 00 01112222222 36778999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHH-HHHHHHHHHHH
Q 037413 288 YGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL-YIVQTLGGIFC 366 (530)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~-~~~~~~~~~~~ 366 (530)
.++.+..+..+..|+|.|+.+.+|++..+++...+...+++++++++.|+++||+.+++ |+..... .++..+..+.+
T Consensus 252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~--r~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK11663 252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGN--RGPMNLIFAAGILLSVGSL 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCC--ccHHHHHHHHHHHHHHHHH
Confidence 77777777778889999998888999999999999999999999999999999994331 1111111 22222222222
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHH
Q 037413 367 ICLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISL 444 (530)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 444 (530)
.... ..+........+.+|++........... .+..+++.+|++.|+.++..++|++++|.+.+. .+..++...+..
T Consensus 330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~ 408 (434)
T PRK11663 330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVV 408 (434)
T ss_pred HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHH
Confidence 2222 2233322233333333222222222223 345667899999999999999999999999887 555666666665
Q ss_pred HHHHHHHHHH
Q 037413 445 MGIMIVCCTF 454 (530)
Q Consensus 445 ~~~~~~~~~~ 454 (530)
.+++.++..+
T Consensus 409 ~~~~~~~~~~ 418 (434)
T PRK11663 409 ISIAAGISAL 418 (434)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=301.68 Aligned_cols=366 Identities=15% Similarity=0.037 Sum_probs=281.9
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
+|..++.+.+..+..........+++|.+.+++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34334443333333333333455678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.+++++++|++.++++|+++|++.+. .+...+++.+++|+++|++++|+...+.++|..+++.+++.+.+..
T Consensus 87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~------ 160 (390)
T PRK03545 87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL------ 160 (390)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh------
Confidence 999999999999999999999999996 6788899999999999999999999999999999999888887766
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTID 299 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
|||+.|++.++++++..++.++..|+.|+++ ++..+..++.+++|.++...+..++.....+...
T Consensus 161 ---gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (390)
T PRK03545 161 ---GWRTTFLAIGGGALITLLLLIKLLPLLPSEH------------SGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAY 225 (390)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC------------cchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766666555533211 0112456678899988776666655555555566
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHH-HHhhcCCcHHHH
Q 037413 300 NVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFC-ICLGRASTLPLS 378 (530)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 378 (530)
.+++.|+.+..|++..+++.+.+...+++++++++.+++.||+++|. . ..+..+..... .+....++.+..
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-------~-~~~~~~~~~~~~~l~~~~~~~~~~ 297 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-------L-LIAIALLLVCLLLLLPAANSEWHL 297 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-------H-HHHHHHHHHHHHHHHHHhchHHHH
Confidence 78888888888999999999999999999999999999999998762 2 22323333322 223334555666
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHHH
Q 037413 379 ILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTFP 455 (530)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 455 (530)
++..++.|++.....+.....+.+..++.++++.|+.+...++|..+||.+.|. .+..+....+...+.+.+++.+.
T Consensus 298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~ 375 (390)
T PRK03545 298 SVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVW 375 (390)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 666777777765554544555545566788999999999999999999999887 66677776666555555444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=295.69 Aligned_cols=357 Identities=13% Similarity=0.032 Sum_probs=263.7
Q ss_pred hhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHH
Q 037413 75 CFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGY 154 (530)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 154 (530)
+.+.+..+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+++....+.+.....+|++.+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34456678899999999999999999999999999999999999999999999988766655554544333334799999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 037413 155 IAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCL 234 (530)
Q Consensus 155 ~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~ 234 (530)
+++|+++|++.+........++|++|+++|++++++.+.+..+|..+++.+++.+.... |||+.|++.+++
T Consensus 83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~---------gWr~~f~~~~~l 153 (368)
T TIGR00903 83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG---------GLQLLIIPIAAV 153 (368)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------chHHHHHHHHHH
Confidence 99999999999976666667799999999999999999999999999998888877654 999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 037413 235 HVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKL 314 (530)
Q Consensus 235 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (530)
+++..++.++.+||.|++++++ . +.++..+.+++++++|.+|.+.+..++....++.+.+|+|.|+.+ .|++.
T Consensus 154 ~~~~~~~~~~~lp~~p~~~~~~-----~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~ 226 (368)
T TIGR00903 154 AAAGIILVLAALPALPFQAAEG-----F-GFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLED 226 (368)
T ss_pred HHHHHHHHHHHcCCCCCCCCCC-----c-chHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCh
Confidence 9888888888888876543110 0 011122457788999999999999999999999999999999976 67886
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhc
Q 037413 315 HTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACG 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (530)
. .+....+..+.+.++ .++++||..||+. +.........+.++.+..+....+....+....+.+++.....+
T Consensus 227 ~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~---r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (368)
T TIGR00903 227 I-AGDAVALAILAGLIG---VAVIPDRVARAGL---RSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYA 299 (368)
T ss_pred H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHH
Confidence 5 555555555555444 5788998876531 11222222233333333333333444444455556666666666
Q ss_pred cccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcchhHHHHHHHHHHHHHH
Q 037413 395 ATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFP 455 (530)
Q Consensus 395 ~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (530)
..+++. +.+|++.||++.|+.+..++++++++|.+.+..-. +....+...+...+++.+.
T Consensus 300 ~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 300 IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 677774 56677899999999999999999999998765222 4344555555544444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=290.44 Aligned_cols=372 Identities=17% Similarity=0.159 Sum_probs=282.8
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHH-hcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRD-NLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
.++.+.+.++++++.+..++.++++.+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++++
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4678889999999999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHH--
Q 037413 140 PTVFSMVFV-----SSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYEL-- 212 (530)
Q Consensus 140 ~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-- 212 (530)
+.+++.+++ ++++.+++.|++.|++.+.++.....+++|+|+++||+++|+.....++|..++++++|.+...
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999998446889999999999999999999999988899999998888876532
Q ss_pred HHhcCC-------CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHH
Q 037413 213 IRRAGA-------TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFV 285 (530)
Q Consensus 213 ~~~~~~-------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (530)
+...+. .+..+||.++++.+++.++.+++.+++.++.|+. +...++.+..+|+|+.|.++
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------~~~~~~~~~vlk~~~~Wlls 258 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------RASIADQLPVLQRLHLWLLS 258 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------ccCHHHHHHHhCCCchhHHH
Confidence 111111 1133699999999998888888877775553321 11135667799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHH
Q 037413 286 LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIF 365 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~ 365 (530)
+.+++.++.+.++..++|.|+++.+ +.........+..+...+.++++|+++||+|+++ .+.++.+...+.
T Consensus 259 lly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-------vl~~~~i~~~i~ 329 (462)
T PRK15034 259 LLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-------VTLINFIFMAIF 329 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-------HHHHHHHHHHHH
Confidence 9999999999999999999988855 3333333333456788889999999999999984 333333322222
Q ss_pred H---HHhhcC---CcHHHHHHHHHHHHHHhhhhhccccccccccccc----------------------cccchhhhhhh
Q 037413 366 C---ICLGRA---STLPLSILSMILFSITTQAACGATFGIIPFISRR----------------------SLGVISGLTGA 417 (530)
Q Consensus 366 ~---~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------------~~g~~~g~~~~ 417 (530)
. .+.... .+.+.....++...+..+..++..+-+++...++ +.|.+.|+...
T Consensus 330 ~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a 409 (462)
T PRK15034 330 SALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISA 409 (462)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHH
Confidence 1 122211 2344444444445566677777777666533231 57789999999
Q ss_pred hhhHHHHhhhhhhhh-cc-CCCcchhHHHHHHHHHHHHH
Q 037413 418 GGNFGSGLTQLLFFT-SS-RHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 418 ~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 454 (530)
.+.+|+++.|.+++. .+ ..++...++.+....++|.+
T Consensus 410 ~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 448 (462)
T PRK15034 410 IGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL 448 (462)
T ss_pred HHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999988777 33 33444555544444444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=301.27 Aligned_cols=367 Identities=12% Similarity=0.099 Sum_probs=284.1
Q ss_pred CCcchHHHHHHHHHHHHhhhhccccccchHHHHH----------------------hcCCChhhHHHHHHHHHHHHHHhh
Q 037413 58 ASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRD----------------------NLNLIKTDIGNAGIASVSGSIFSR 115 (530)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~s~~~~~~~~~~ 115 (530)
.+.++....++++++.+++.++..++...+.+.+ |++++..+.|++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 4557788888899999999999998888877776 899999999999999999999999
Q ss_pred hhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhh
Q 037413 116 LVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV--SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAA 192 (530)
Q Consensus 116 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~ 192 (530)
++.|+++||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+. .+....++.||+|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999998887554 5688999999999999996 7888899999999999999999999
Q ss_pred hhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc---------CCCC
Q 037413 193 GWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQK---------KGDV 263 (530)
Q Consensus 193 ~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------~~~~ 263 (530)
.+..+|..+++.+++.+.+.. .+||++|++.++++++..++++++.++.|+..++..++ +++.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~--------~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~ 245 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESW--------GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQK 245 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhccccc
Confidence 988999988887777665430 18999999999998888888887777777543211000 0001
Q ss_pred CCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhcc
Q 037413 264 PTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAA 343 (530)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~ 343 (530)
.+.+....+++.++++.+|...+..++.+...+.+.+|+|.|+.+.+|++..+.+++.++..++.+++.+++|+++||++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred CCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111234678899999999999998888888888999999999999999999999999999999999999999999988
Q ss_pred CCCCCcchh---HHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhh
Q 037413 344 RPFGMRGRL---WNLYIVQTLGGIFCICLGR-ASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGG 419 (530)
Q Consensus 344 ~r~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 419 (530)
+|+..+... ....++..+.++..+.... ..+....++.+.+.+.+.+...+..+....+..++.+|.+.|+.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 405 (465)
T TIGR00894 326 SSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPG 405 (465)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHH
Confidence 764332211 1111111111222222222 233443444444444444444455555555666779999999999999
Q ss_pred hHHHHhhhhhhhh
Q 037413 420 NFGSGLTQLLFFT 432 (530)
Q Consensus 420 ~~g~~~~~~~~~~ 432 (530)
+++++++|.+.+.
T Consensus 406 ~l~~~i~p~l~g~ 418 (465)
T TIGR00894 406 FIGGLIASTLAGN 418 (465)
T ss_pred HHHHHHHHHhhhe
Confidence 9999999999887
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=297.99 Aligned_cols=362 Identities=13% Similarity=0.089 Sum_probs=251.8
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhh-HHH-----HHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTD-IGN-----AGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLI 135 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 135 (530)
++.+...+++.+++++|...++...|.+.++++.+.++ .++ +.++..+++.+++++.|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677778899999999999999999999999654322 122 257788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHH
Q 037413 136 MLSAPTVFSMVFVSSARG--------YIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLT 206 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 206 (530)
++++++++++++++|+++ ++++|+++|++.|+ ++....+++|++|+++||++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 89999999999996 888899999999999999999999888888888777666
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc--cccc-CCCCCCCChhHHHHHhhh-chhHH
Q 037413 207 PFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLN--TLQK-KGDVPTDKFPKVLWYAIT-NYRTW 282 (530)
Q Consensus 207 ~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 282 (530)
..+...+.... ....|||++|++.+++.++ +++.....||+|+..+. +.++ +++...+.....+++.++ +++.+
T Consensus 175 ~~~~~~~~~~~-~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (490)
T PRK10642 175 VLISTIVGEAN-FLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSL 252 (490)
T ss_pred HHHHHhcCHHH-hcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHH
Confidence 55544321110 1134999999997765553 33334455665542111 0000 000000000112333333 22323
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 283 IFV-LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
... ...++....++.+..|+|.|+.+.+|++..+.++......++.+++.++.|+++||+|||+ .+..+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~ 325 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-------FVILGSVA 325 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHH
Confidence 222 2233445567777889999998888999888888777888889999999999999999984 33333221
Q ss_pred ---HHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 362 ---GGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 362 ---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.++.++.....++....++..++.+++.+...+....+. +.+|++.|+++.|+.+....+++.++|.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~ 400 (490)
T PRK10642 326 LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAW 400 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112212222233444455555556665555555555553 46788899999998766677778888888776
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=292.60 Aligned_cols=354 Identities=15% Similarity=0.116 Sum_probs=275.1
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
++|..+.++++..++..++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 46777888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 140 PTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
++.++++++++++.+++.|+++|++.+. .+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----- 166 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA----- 166 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----
Confidence 9999999999999999999999999996 7788899999999999999999998888888888777665544332
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
+||+.|++.+++.++..++..++.||.|+..+++ ..++++++..+...+..+.+..+...+..++.....+..
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (406)
T PRK11551 167 ----AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA---GAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFL 239 (406)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc---CcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999999988877776666666667755432111 111111111111111112233444444444444555666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 037413 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLS 378 (530)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (530)
..++|.|+.+ .|++..+.+.+.+...++.++++++.|++.||+++|+ ....+.....+.+..+...++.+..
T Consensus 240 ~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T PRK11551 240 LNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-------VVLLIYAGILASLAALAAAPSFAGM 311 (406)
T ss_pred HHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 7788988876 7999999999999999999999999999999999873 3333444444444444445566555
Q ss_pred HHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhc
Q 037413 379 ILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTS 433 (530)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~ 433 (530)
.+..++.+++.....+..+++. +.+|+++|+++.|+.+...++|+.++|.+.|..
T Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l 367 (406)
T PRK11551 312 LLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL 367 (406)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence 5666667777666667677764 467888999999999999999999999998883
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=293.44 Aligned_cols=381 Identities=17% Similarity=0.196 Sum_probs=270.5
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
+|..+..+++.....++++..++...|.+.++ |++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 45555555666667777777777888999888 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh----hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhh-HHhHHHHHHHHHH
Q 037413 141 TVFSMVFVS----SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGI-TQLLTPFIYELIR 214 (530)
Q Consensus 141 ~~~~~~~~~----~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~l~~~~~ 214 (530)
+.+++++++ +++.+++.|++.|++.+. ++.....+.+++|+++|++++++++.+.++|..+ +++++..+....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~- 184 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN- 184 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 999888763 788999999999999986 6777788899999999999999998888887643 443322222211
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc----cccc-------CCCCCCCChhHHH-HHhhhchhHH
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLN----TLQK-------KGDVPTDKFPKVL-WYAITNYRTW 282 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 282 (530)
+||+.|++.+++.++..++.++++||.|++... +.+. +.++++.+..+.+ +..+++|.+|
T Consensus 185 --------gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (452)
T PRK11273 185 --------DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLW 256 (452)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHH
Confidence 899999999988888777777777877654210 0000 0000111122222 3467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 283 IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
...+..++.+...+....++|.|+++..|++..+++.+..+..++.+++.++.|+++||+++++. . ........+.
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~--~--~~~~~~~~l~ 332 (452)
T PRK11273 257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--G--ATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--c--hHHHHHHHHH
Confidence 98888888777777888899999999889999999998888889999999999999999954310 1 1111111222
Q ss_pred HHHH--HHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHh-hhhhhhh-ccCCC
Q 037413 363 GIFC--ICLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGL-TQLLFFT-SSRHS 437 (530)
Q Consensus 363 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~~~-~~~~~ 437 (530)
.+.. +......+.+..++.+++.+.+..........+ .+..|++.+|+++|+.+...++|+.+ +|.+.|. .+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 333 TIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 2222 222222333333333444444332222222233 35778889999999999999988755 7888777 55566
Q ss_pred cchhHHHHHHHHHHHHHH
Q 037413 438 TATGISLMGIMIVCCTFP 455 (530)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~ 455 (530)
+...+...+.+.+++++.
T Consensus 413 ~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 413 WDGGFMVMIGGSILAVIL 430 (452)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 666666555555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=289.94 Aligned_cols=370 Identities=13% Similarity=0.128 Sum_probs=282.1
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
.+++....+++.++.........++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36677778888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 140 PTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
++.++.+++++++.+++.|+++|++.+. .+....++.|++|+++|+++++..+....+|..+++.+.+.+...
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------ 157 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR------ 157 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 9999999999999999999999999995 777889999999999999999988888888887777666554321
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..+||+.|++.+++.++..++.++ ++.|+.++++.+ + +++. .+. ..++.++...+..++....++.+
T Consensus 158 --~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~~-~---~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T PRK03699 158 --SIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAPK-A---DKPV----AKE-KWGIGVLFLAIAALLYILAQLTF 224 (394)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCcc-c---cCcc----ccc-cCChHHHHHHHHHHHHHHHHHHH
Confidence 128999999998877766554433 222332111100 0 0000 011 12466777777666666677778
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 037413 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLS 378 (530)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (530)
..|+|.|+++.+|++..+.+.+.+...++..+++++.++++||+++|+ .......+..+.+.++...++.+..
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~ 297 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-------ILTVLAGLALVLMYLFVNTDDPSHL 297 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHcCCchHH
Confidence 889999999889999999999999999999999999999999999884 3333333344444444444555445
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHHH
Q 037413 379 ILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTFP 455 (530)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 455 (530)
.+..++.|++.+..++...+...+..++.++...|......++|+.++|.+.|. .+..+....++....+.+++.+.
T Consensus 298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 298 LYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 555666777776666766666555555666778888888899999999999887 45566666666555555554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=293.38 Aligned_cols=380 Identities=13% Similarity=0.111 Sum_probs=285.5
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
+|.++..+++.....+.....++...|.+.+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 56666666777666677777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHH-HHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 141 TVFSMVFVSSARGYIA-ARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~-~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
+.++++++++++.+++ .|+++|++.+. .+....++.++++ ++|++++++...+..+|..+++.+++.+.+..
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~----- 170 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF----- 170 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-----
Confidence 9999999999998875 56999999995 6777788899996 68999999999999999999998888887766
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC--ccc--c--ccCCCCCC-------CChhHH-HHHhhhchhHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN--LNT--L--QKKGDVPT-------DKFPKV-LWYAITNYRTWIF 284 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~--~~~--~--~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~ 284 (530)
|||++|++.+++.++..+..++..++.++.+ +.+ . +.+...++ ++..+. ..+.+++|.++..
T Consensus 171 ----gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (455)
T TIGR00892 171 ----GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVY 246 (455)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHH
Confidence 9999999999988766665555544322110 000 0 00000000 000110 1256788988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH
Q 037413 285 VLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI 364 (530)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~ 364 (530)
.+..++....++....+++.|+.+ .|++..+++.+.++.+++.++++++.+++.||...+. ++...+..+..+.++
T Consensus 247 ~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~~~~~~~~l 322 (455)
T TIGR00892 247 LSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP---HVQYLFSFALLFNGL 322 (455)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH---HHHHHHHHHHHHHHH
Confidence 877777766767777788999876 7999999999999999999999999999999743221 111222233333333
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCC-Ccchh
Q 037413 365 FCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRH-STATG 441 (530)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~-~~~~~ 441 (530)
.+++....++.+..++..++.|++.+...+...+++ +.+++++++++.|+++...++|++++|.+.|. .+.. ++...
T Consensus 323 ~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~ 402 (455)
T TIGR00892 323 THLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYI 402 (455)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchH
Confidence 333444455666667777788888877777777774 46788899999999999999999999999887 4444 35666
Q ss_pred HHHHHHHHHHHHH
Q 037413 442 ISLMGIMIVCCTF 454 (530)
Q Consensus 442 ~~~~~~~~~~~~~ 454 (530)
++..+++.+++.+
T Consensus 403 f~~~~~~~li~~~ 415 (455)
T TIGR00892 403 FYASGSIVVSAGL 415 (455)
T ss_pred HHHhhHHHHHHHH
Confidence 6666655554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=283.04 Aligned_cols=356 Identities=12% Similarity=0.083 Sum_probs=269.4
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
.|+.+..+.+..+......+...+.+|.+.+++|+++++.++..+++.++..+++++.|++.||+|||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 55555555555444444555666678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.+++++++|++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+.+..
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~------ 171 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI------ 171 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence 999999999999999999999999996 7888899999999999999999999999999999999998887766
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTID 299 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
+||+.|++.++++++..+..+...|+.|+++ + +..+..++.+++|.+|...+..++.+...+...
T Consensus 172 ---gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~--------~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T PRK10213 172 ---GWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP--------S----HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFF 236 (394)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHCCCCCccc--------c----cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777665544444444432110 0 011234567889998887776666666566666
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHH
Q 037413 300 NVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSI 379 (530)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (530)
++++.++.+.+|++..+.+.+....+++.+++.++.+++.||.+++ .............+++....++.+...
T Consensus 237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~ 309 (394)
T PRK10213 237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-------ALAGAPLVLAVSALVLTLWGSDKIVAT 309 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6765555566899999999999999999999999999999985433 122222222333333333445566666
Q ss_pred HHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHH
Q 037413 380 LSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISL 444 (530)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 444 (530)
...++.|++.+...+...+.+...-+++.+...++.....++|..+||.+.|. .+..+....+..
T Consensus 310 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~ 375 (394)
T PRK10213 310 GVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLML 375 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence 67777888887777766666543334556677777778888999999999888 444554444443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=287.57 Aligned_cols=359 Identities=14% Similarity=0.069 Sum_probs=268.7
Q ss_pred HHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 037413 67 LSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV 146 (530)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 146 (530)
...+.........+.++++.|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 7 VGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred HHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence 33344444444567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 147 FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
+++|++.++++|++.|++.+. ++.....+.+++| ++|++++++...+.++|..+++.+.+.+.+.. +||
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~ 156 (377)
T TIGR00890 87 IADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE---------GVP 156 (377)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc---------cHH
Confidence 999999999999999999996 6777788899997 57999999998888888876554444443322 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 226 IAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
+.|++.+++.++..+..+++.+++|+++.++ +++.++.....++.+++|.++...+..++..........+.+.|
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (377)
T TIGR00890 157 AAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT-----NIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY 231 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCchhcccc-----CcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999998888887777766544321110 01111112345677888888887776666555555555666766
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHH
Q 037413 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST--LPLSILSMI 383 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 383 (530)
.+ .+|.+..+.+.+.+...+..++++++.|++.||++||+ .+..+..+..+..+++...++ ........+
T Consensus 232 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 232 GQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-------TMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 54 47899888999999999999999999999999999884 344444444444444433332 222333445
Q ss_pred HHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 384 LFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 384 ~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
+.+++.+...+....+. +..++++++++.|+.+...++|..++|.+.+. .+..++...+...+++
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~ 370 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAF 370 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 55666665555555554 46678899999999999999999999999887 4455555555444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=297.72 Aligned_cols=356 Identities=14% Similarity=0.047 Sum_probs=287.9
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
+|..+..++++.++..+|...++..+|.+.+++|.+.++.+|+.+.|.+++.++.+++|+++||+|||++++++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhc-cCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMF-NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
+++++++++|++.++++|+++|+|.+. .+.....+.+++ |+++|++++|++....++|..+||.+++.+.+..
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~----- 158 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF----- 158 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----
Confidence 999999999999999999999999996 677777777776 6789999999999999999999998888887655
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCC------------------CCCCCChh-----------
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKG------------------DVPTDKFP----------- 269 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------------~~~~~~~~----------- 269 (530)
+|||.|++...+.++..++.++++|+.|++++++.+..+ .......+
T Consensus 159 ----gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 159 ----YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 999999999888888777777777765543221111000 00000000
Q ss_pred ---------------HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 037413 270 ---------------KVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPL 334 (530)
Q Consensus 270 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 334 (530)
-...+.+++|.++...+..++.....+....++|.|+++.+|+++.++++......++..++.++
T Consensus 235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~ 314 (495)
T PRK14995 235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPI 314 (495)
T ss_pred HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00135678888877777777777777777788999999999999999999999999999999999
Q ss_pred hhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh---cCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccc
Q 037413 335 GGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG---RASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGV 410 (530)
Q Consensus 335 ~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~ 410 (530)
.|++.||+++|+ .+..+..+..+++.++. ...+.+..+...++.|++.+...+..... .+.+|+++++.
T Consensus 315 ~g~l~~r~g~~~-------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~ 387 (495)
T PRK14995 315 AGILVSRLGLRL-------VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA 387 (495)
T ss_pred HHHHHHHcCchH-------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence 999999999873 44444444444433322 22345555667778888888877766665 56788899999
Q ss_pred hhhhhhhhhhHHHHhhhhhhhh
Q 037413 411 ISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 411 ~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+.++.++..++|+.+|+.+.+.
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=290.96 Aligned_cols=372 Identities=16% Similarity=0.174 Sum_probs=283.0
Q ss_pred HHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhH
Q 037413 72 FFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSA 151 (530)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 151 (530)
++..+++...++...|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 45667788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHH
Q 037413 152 RGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFA 230 (530)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (530)
+.++++|+++|++.+. .+....++.|++|+++|++++++.+...++|..+++.+++.+.+.. +||+.|++
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~~~~~~~ 153 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF---------SWQWAFII 153 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC---------CchHHHHH
Confidence 9999999999999996 7888899999999999999999999999999999988887776654 89999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccccccC-------------CCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 037413 231 PGCLHVIMGILVLTLGQDLPDGNLNTLQKK-------------GDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELT 297 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
.+++.++..++.++..++.|++++...+++ .+++++..+...++.+++|+++...+..++.......
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF 233 (399)
T ss_pred HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH
Confidence 999888877777777777665322110000 0111112234567788999999988888888888888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcch-hHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 298 IDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGR-LWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
...++|.|+.+.+|.+..+.+.+.+...++.+++.++.+++.||++||+..... ......+..+..+........++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (399)
T TIGR00893 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313 (399)
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 888999999998999999999999999999999999999999999998411100 0011111111111111222122333
Q ss_pred HHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCC-cchhHHHHHHHHHHHH
Q 037413 377 LSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHS-TATGISLMGIMIVCCT 453 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 453 (530)
.... ..+.+.+.....+..+++. +..|++.|+++.|+.+.+.++|+.++|.+.+. .+..+ +...+...+.+.+++.
T Consensus 314 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 314 AALA-LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred HHHH-HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 3322 2333333333566666664 56788899999999999999999999999887 44444 5555554444444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=287.16 Aligned_cols=356 Identities=13% Similarity=0.074 Sum_probs=245.8
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcC---CChhhHHHHHH---HHHHHHHHhhhhhHHHhhhhCCchhhHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLN---LIKTDIGNAGI---ASVSGSIFSRLVMGAVCDLLGPRYGCAFL 134 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s---~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 134 (530)
+++.+..++++.+++++|...++...|.+.++++ .+..+.+...+ ...++..++++++|+++||+|||+++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4455667778899999999999999999999985 55565544444 44455559999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhH
Q 037413 135 IMLSAPTVFSMVFVSSAR--------GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLL 205 (530)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 205 (530)
.++++++++++++++++. .++++|+++|++.|. ++...++++|++|+++|+++.++.+.+...|..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988874 589999999999996 88889999999999999999999888777887777766
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHH
Q 037413 206 TPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFV 285 (530)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (530)
...+........ ....|||++|++.+++.++... .....||.|+. +.++ .++ ...+++++++++.+...
T Consensus 180 ~~~~~~~~~~~~-~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~---~~~~--~~~----~~~~~~l~~~~~~~~~~ 248 (432)
T PRK10406 180 VVVLQQTLEDAE-LREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ---ETRA--LKE----AGSLKGLWRNRRAFIMV 248 (432)
T ss_pred HHHHHHhCCHHH-HhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH---HHhh--hcc----cccHHHHHhhHHHHHHH
Confidence 555443221100 0123999999998776655422 22223333221 1111 111 12356677888887766
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH
Q 037413 286 LLYGMS-LGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI 364 (530)
Q Consensus 286 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~ 364 (530)
+...+. ...++.+.+|+|.|+.+.+|++..+.+....+..+...++.++.|+++||++||+ ...+...+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-------~~~~~~~~~~~ 321 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-------SMLCFGSLAAL 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-------HHHHHHHHHHH
Confidence 655443 5567778889999998888999989888888888888888999999999999884 22222222211
Q ss_pred H---HHH-hhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhH-HHHhhhhhhhhcc
Q 037413 365 F---CIC-LGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNF-GSGLTQLLFFTSS 434 (530)
Q Consensus 365 ~---~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~~~~~ 434 (530)
. +.. .....+.......+.+..+..+...+..+.+. +.+|++.|+++.|+.+..+++ .+...|.+.+..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~ 397 (432)
T PRK10406 322 FTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK 397 (432)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 111 11222333222222222223333334445553 577888999999999988775 3445777666544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=283.34 Aligned_cols=340 Identities=13% Similarity=0.095 Sum_probs=257.7
Q ss_pred cccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 037413 80 FAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARF 159 (530)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 159 (530)
...++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 66779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 160 MIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
++|++.+. .+....++.+++| ++|+++++++..+..+|..+++.+++.+.+.. .+||+.+.+.++..++.
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--------~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--------ETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHH
Confidence 99999996 6777788999997 78999999999888899998888888776542 17999988776665544
Q ss_pred HHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 037413 239 GILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAG 318 (530)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 318 (530)
.+..++..++.|++++ + ++.+ .++.+++++.|...+..++....+.....|+|.|+.+ +|.+..+++
T Consensus 177 ~~~~~~~~~~~~~~~~----~----~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag 243 (393)
T PRK09705 177 LFAWWWQSAREVASSH----K----TTTT----PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSG 243 (393)
T ss_pred HHHHHHHhcCCCcccc----C----CCcC----CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhh
Confidence 4333333233232110 0 0011 1234567888887777777777777888899999987 799999999
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHHhhhhhcccc
Q 037413 319 VIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG-RASTLPLSILSMILFSITTQAACGATF 397 (530)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (530)
.+.++..++.++++++.+++.||+++|+ ....+..+..+...++. ...+... ...++.+++.+...+...
T Consensus 244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~g~g~g~~~~~~~ 314 (393)
T PRK09705 244 SLLALMTLGQAAGALLMPAMARHQDRRK-------LLMLALVLQLVGFCGFIWLPLQLPV--LWAMVCGLGLGGAFPLCL 314 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHhccchHHHHH
Confidence 9999999999999999999999999873 33444444444333332 2222222 223445666666666555
Q ss_pred cc-ccccc-cccccchhhhhhhhhhHHHHhhhhhhhh-ccCCC-cchhHHHHHHHHH
Q 037413 398 GI-IPFIS-RRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHS-TATGISLMGIMIV 450 (530)
Q Consensus 398 ~~-~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 450 (530)
.. .+..+ ++++++.+|+.+...++++.++|.+.|. .|..+ +...+....++.+
T Consensus 315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (393)
T PRK09705 315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVV 371 (393)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44 44554 4688999999999999999999999887 44433 3444444443333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=278.83 Aligned_cols=351 Identities=12% Similarity=0.028 Sum_probs=275.7
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
.+.....+.+..++..+....+.+.+|.+.+++|+|..+.++..+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 44455566677777777777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.++..++++++.+++.|+++|++.+. .+....++.|++|+++|++.+++......+|..+++.+++.+.+..
T Consensus 91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------ 164 (406)
T PRK15402 91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------ 164 (406)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 999999999999999999999999986 6777899999999999999999888777788888887777766544
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTID 299 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
+||+.|++.+++.++..+..++..||.++..+ ++.+.++..+.++..+++|.++...+..++.......+.
T Consensus 165 ---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (406)
T PRK15402 165 ---PWRGMFVLFAALAALSFFGLWRAMPETAGRVG------EKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWI 235 (406)
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHhCCCCCcccc------ccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777666665555332110 011112345567788999999888777766666566666
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCc
Q 037413 300 NVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG-----RAST 374 (530)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 374 (530)
.+.|.|+.+.+|.++.+.+.......++.+++.++.+++.||+++|+ ...++..+..++..++. ...+
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-------LIRMGLWPMVAGLLLAALATVISSHA 308 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHccccc
Confidence 77888888889999999998877777888999999999999999873 33344333333322221 1234
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhhc
Q 037413 375 LPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTS 433 (530)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~ 433 (530)
.+...+..++.+++.+...+.........+++++|++.++.+....++..+|+.+.+..
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556667778888877766665554445568999999999999999999999998774
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=296.02 Aligned_cols=385 Identities=15% Similarity=0.111 Sum_probs=280.3
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+.+|..+.++.++.+...++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 44666677777888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc-
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA- 216 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~- 216 (530)
+++.++++++++++.++++|++.|++.++ .+....+++|++|+++|++.+++...+..+|.++++.++..+.......
T Consensus 243 ~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~ 322 (742)
T TIGR01299 243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSF 322 (742)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999996 7888999999999999999999999999999988887766655432100
Q ss_pred ---CCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc---c---------ccccCC--------------------
Q 037413 217 ---GATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL---N---------TLQKKG-------------------- 261 (530)
Q Consensus 217 ---~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~---~---------~~~~~~-------------------- 261 (530)
......+||+.+++.+++.++. ++.++++||+|+... + +....+
T Consensus 323 ~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 323 QMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred ccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 0012247999999887766554 455566787764210 0 000000
Q ss_pred -C-------CCCCC---------------hhHHHHHhhhc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-
Q 037413 262 -D-------VPTDK---------------FPKVLWYAITN---YRTWIFVLLYGMSLGIELTIDNVIAEYFFDR----F- 310 (530)
Q Consensus 262 -~-------~~~~~---------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 310 (530)
. ..... .+..++.+++. ++.+.+.+..++..+.++++..|+|.++.+. +
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~ 481 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYA 481 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 01123333332 2345566666777788999999999876431 0
Q ss_pred ------------------------------------CC-----C------------------------------------
Q 037413 311 ------------------------------------NL-----K------------------------------------ 313 (530)
Q Consensus 311 ------------------------------------g~-----~------------------------------------ 313 (530)
|+ +
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 561 (742)
T TIGR01299 482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF 561 (742)
T ss_pred hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence 00 0
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 314 --------------------------------LHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 314 --------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
.....+...+.+++.+++.+++|+++||+|||+ ++.+++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~-------~l~~~~~l 634 (742)
T TIGR01299 562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR-------MLAGSMVL 634 (742)
T ss_pred hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHH
Confidence 001233355667889999999999999999984 66667777
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcch
Q 037413 362 GGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTAT 440 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 440 (530)
.+++++++.+..+....++..++++++.+...+..++++. .+|++.|++++|+.++...+|++++|++.+.........
T Consensus 635 sai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~ 714 (742)
T TIGR01299 635 SCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAA 714 (742)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7776666666666555555566677777777777777754 667889999999999999999999999987632233333
Q ss_pred hHHHHHHHHHH
Q 037413 441 GISLMGIMIVC 451 (530)
Q Consensus 441 ~~~~~~~~~~~ 451 (530)
.+.+.+++.++
T Consensus 715 pf~i~a~~lll 725 (742)
T TIGR01299 715 PILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHH
Confidence 44433333333
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=285.45 Aligned_cols=356 Identities=14% Similarity=0.147 Sum_probs=257.7
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
+++.+..+++.++...++.....+..|.+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~ 95 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 56667788899999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.++++++++++.++++|+++|++.+. ++....++.|++|+++|++++++...+..+|..+++.+.+.+.+..
T Consensus 96 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~------ 169 (426)
T PRK12307 96 GTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY------ 169 (426)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC------
Confidence 999999999999999999999999996 7888899999999999999999998888888887776666554433
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc---ccccCCCCCC---CChhHHHHHhhhchhHHHHHHHHH---H
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLN---TLQKKGDVPT---DKFPKVLWYAITNYRTWIFVLLYG---M 290 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~ 290 (530)
+||+.|++..+..++ .+ ++....||+++. +.+.+.++.+ +.....+++.+++|.++...+... +
T Consensus 170 ---~w~~~f~i~~~~~~~-~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (426)
T PRK12307 170 ---GWRAAFFVGLLPVLL-VI---YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFS 242 (426)
T ss_pred ---CHHHHHHHHHHHHHH-HH---HHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHH
Confidence 999999885443222 22 122222333211 1011100000 111235667788887765443322 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 037413 291 SLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG 370 (530)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (530)
.+...+.+..++|.|+.+ .|+++.+.+.+.+...++.++++++.|++.||++||+ ....+.++..+.++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-------~~~~~~~~~~~~~~~~~ 314 (426)
T PRK12307 243 IFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-------TFSIGLLMSFLFIFPLF 314 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHH
Confidence 233334456788988877 6999999999888999999999999999999999873 33344433333332222
Q ss_pred c-CCcHHHHHHHHHHHHHHh--hhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCc
Q 037413 371 R-ASTLPLSILSMILFSITT--QAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHST 438 (530)
Q Consensus 371 ~-~~~~~~~~~~~~~~g~~~--~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~ 438 (530)
. ..+.. ..+..++++++. ....+....+ .+.+|++.+|++.|+.+...++++.++|.+.+. .+..+.
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 315 RIPQDNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred HHccccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 1 22221 122222333322 1222333344 357788899999999999999999999999877 444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=275.87 Aligned_cols=359 Identities=10% Similarity=0.045 Sum_probs=264.8
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS 144 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 144 (530)
+....+..+..........+.+|.+++|+|++.++.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 44555566666666777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCc
Q 037413 145 MVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTA 223 (530)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (530)
+++++|++.+++.|+++|++.+. .+....++.+++++++|++++++...+..+|..+++.+++.+.+.. +
T Consensus 85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---------g 155 (382)
T PRK10091 85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF---------S 155 (382)
T ss_pred HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc---------c
Confidence 99999999999999999999996 6777788999999999999999998888899988888877776654 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 224 WRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIA 303 (530)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (530)
||++|++.+++.++..+..++..|+.++++ +.+.++ ..+.++++..|...+..++.....+....+++
T Consensus 156 wr~~f~~~~~~~~~~~~~~~~~lp~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (382)
T PRK10091 156 WRYTFLLIAVFNIAVLASIYFWVPDIRDEA-----------KGGLRE-QFHFLRSPAPWLIFAATMFGNAGVFAWFSYIK 223 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccc-----------ccCHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777666666655543211 011112 23456777777766655555445555566778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh-cCCcHHHHHHHH
Q 037413 304 EYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG-RASTLPLSILSM 382 (530)
Q Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 382 (530)
.|+.+.+|+++.+.+++.+...++.++++++.+++.||+++|+ ....+..+..+..+++. ..++.+...+..
T Consensus 224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 296 (382)
T PRK10091 224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR-------IAAVTDFIIVLALLMLFFFGGMKTASLIFA 296 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888878999999999999999999999999999999999874 44444444444433332 233444444444
Q ss_pred HHHHHHhhhhhccccc-ccccc-ccccccchhhhhhhhhhHHHHhhhhhhhh-cc-CCCcchhHHHHHHHHHHHH
Q 037413 383 ILFSITTQAACGATFG-IIPFI-SRRSLGVISGLTGAGGNFGSGLTQLLFFT-SS-RHSTATGISLMGIMIVCCT 453 (530)
Q Consensus 383 ~~~g~~~~~~~~~~~~-~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 453 (530)
++.+++.....+.... ..++. +++..+.+ ..+...++|.++||.+.|. .+ ..++...+...+....+..
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 297 FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM 369 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence 4555554433333332 23333 33444443 3466778999999999887 44 3455555555444443333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=276.12 Aligned_cols=348 Identities=14% Similarity=0.126 Sum_probs=270.5
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
++.+..+....++.........+..|.+.+++|.++.+.+++.+++.++..+++++.|++.||+|||+++..+.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 83 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS 83 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 33444444445556666777778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCC
Q 037413 142 VFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATP 220 (530)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 220 (530)
.++.+++++++.+++.|++.|++.+. .+....++.|++|+++|++++++.+....+|..+++.+++.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------- 156 (385)
T TIGR00710 84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------- 156 (385)
T ss_pred HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 99999999999999999999999996 7888899999999999999999999999999999998888777655
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 037413 221 FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300 (530)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (530)
+||+.|++.+++.++..++.++..||.++.++ +.+.++.++.+++.+++|+++...+...+.....+....
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (385)
T TIGR00710 157 --SWHAIFAFLSLAGILLSALIFFILPETLPYEA-------RIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFS 227 (385)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-------cCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777776666555433211 111122345567788999998887777676666777777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh---c-C-CcH
Q 037413 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG---R-A-STL 375 (530)
Q Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~ 375 (530)
+.|.++.+.+|.++.+.+.+.+...++.+++.++.+++.||+++|+ ....+..+..+..+++. . . ...
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-------LLRMGLILFAVSAVLLEITAILGLGSW 300 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 8898888889999999999999999999999999999999999874 22223222222222211 1 1 223
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 376 PLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.......++.+++.+...+.......+..|++++++.++.+...+.++.+.+.+.+.
T Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 301 AMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566777777777776666544446789999999998888665555555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=281.74 Aligned_cols=364 Identities=15% Similarity=0.180 Sum_probs=266.3
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+.+|+.+..+++.++...++....+++.|.+++++|++..+.+++.+++.++..+++++.|.++||+|||+++.++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcC
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAG 217 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 217 (530)
+++.++++++++++.+++.|++.|++.+. .+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+...
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~--- 164 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG--- 164 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99999999999999999999999999996 78888999999999999999999999999999998888777766540
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCC-C-------CCCChhH-------HHHHhh-hchh-
Q 037413 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGD-V-------PTDKFPK-------VLWYAI-TNYR- 280 (530)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~-------~~~~~~~-------~~~~~~-~~~~- 280 (530)
.+||+.|++.++..++. ++.....||.++..+++.+++.. + .+...+. ..+... +++.
T Consensus 165 ----~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (405)
T TIGR00891 165 ----DGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPT 239 (405)
T ss_pred ----ccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHH
Confidence 14999998876554443 33334445543211110000000 0 0000000 000000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHH
Q 037413 281 TWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360 (530)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~ 360 (530)
+....+...+..........++|.|+.+.+|++..+.+.+.+...++.+++.++.+++.||++||+ .+.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~-------~~~~~~~ 312 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK-------AYVCSLL 312 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-------hhHHHHH
Confidence 122222223333344455667899998889999999999999999999999999999999999984 3333333
Q ss_pred HHHH-HHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCC
Q 037413 361 LGGI-FCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHS 437 (530)
Q Consensus 361 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~ 437 (530)
+..+ .........+.+...+..++.++......+....++ +..|++.++++.|+.+...++|+.++|.+.|. .+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 313 AGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3222 222222334444444444555555555555555564 46778899999999999999999999999887 44443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=282.38 Aligned_cols=356 Identities=18% Similarity=0.170 Sum_probs=271.8
Q ss_pred HHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh
Q 037413 70 LSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS 149 (530)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 149 (530)
+.++..+.++..++...|.+.+++|++..+.+++.+++.+++.++.++.|+++||+|||+++.++.++.+++.++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 35667778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHH-hHHHHHHHHHHhcCCCCCCchhHH
Q 037413 150 SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQ-LLTPFIYELIRRAGATPFTAWRIA 227 (530)
Q Consensus 150 ~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~l~~~~~~~~~~~~~~wr~~ 227 (530)
+++.+++.|++.|++.+. .+...+++.|++|+++|++++++.+.+..+|..+++ +++..+.... +||+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~ 152 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY---------SWHWV 152 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC---------CchhH
Confidence 999999999999999996 788889999999999999999999999999998888 4554444333 89999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccccc-----cC-------CCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 037413 228 FFAPGCLHVIMGILVLTLGQDLPDGNLNTLQ-----KK-------GDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295 (530)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (530)
|++.+++.++..++.+++.++.|++++.+.. ++ .+++.+......+..+++|.+|...+..++.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999988888777777777776543211000 00 00001112234567788999998888888887777
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc--CC
Q 037413 296 LTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR--AS 373 (530)
Q Consensus 296 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 373 (530)
..+..+.|.|+.+.+|++..+.+.+.+...++.+++.++.+++.||..+|+. ............+.+..... ..
T Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 308 (379)
T TIGR00881 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR----GPLAVFFMALIIVSLLVYWLNPAA 308 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHHHHHHhcCcch
Confidence 8888899999999899999999999999999999999999999998654421 11221222222222222222 22
Q ss_pred cHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCc
Q 037413 374 TLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHST 438 (530)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~ 438 (530)
+.+......++.|+......+....+ .+..|++.|+++.|+.+....+|+.++|.+.|. .+..++
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 33334444445554443444444444 456788899999999999999999999999877 444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=272.92 Aligned_cols=363 Identities=11% Similarity=0.012 Sum_probs=266.3
Q ss_pred HHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh
Q 037413 69 WLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV 148 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 148 (530)
.+..+...+......|.+|.+.++++.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++.++++++
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 44445566667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHH
Q 037413 149 SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIA 227 (530)
Q Consensus 149 ~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (530)
+|++.++++|+++|++.+. .+....++.|++++++|++++++......+|..+|+.+++.+.+.. |||+.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~---------gw~~~ 172 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV---------HWKVL 172 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CHHHH
Confidence 9999999999999999985 5566688999999999999999999999999999998888877655 99999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 228 FFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFF 307 (530)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (530)
|++.+++.++..+..++..||.++++ +++...+...+.++.+++||.+|...+..++.....+.+..+.|.+++
T Consensus 173 f~~~~~~~~i~~~~~~~~lp~~~~~~------~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~ 246 (413)
T PRK15403 173 FAIIAVMGLIAFVGLLLAMPETVKRG------AVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILI 246 (413)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccc------CCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 99999888877666555556543211 011111223567788899999999888887777777777778899999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 037413 308 DRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSI 387 (530)
Q Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (530)
+.+|+++.+.++.......+..++..+.+.+.++..+++..........++..+...... ...++.+..++..++.++
T Consensus 247 ~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~~l~~~ 324 (413)
T PRK15403 247 DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWPHVWLWSVLGTSLYAF 324 (413)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--HccccHHHHHHHHHHHHH
Confidence 989999999999887777777777777776554433321100000111111111111111 122333334566677777
Q ss_pred HhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcchhHHHHHHH
Q 037413 388 TTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIM 448 (530)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (530)
+.+...+......-.-.+..+|++.++.+.....+..+++...+.....+....+.....+
T Consensus 325 G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 385 (413)
T PRK15403 325 GIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV 385 (413)
T ss_pred HHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 8777777666432222223479999999998888888888887664444444455444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=286.00 Aligned_cols=365 Identities=14% Similarity=0.207 Sum_probs=253.8
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
.+|+.+..+++.+++..++.....+..|.+.+++|+++.+.+++.+.+.+++.++.++.|+++||+|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 140 PTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
++.++.+++++++.+++.|++.|++.+. ++....++.|++|+++|++++++...+.++|..+++.+.+.+.+..
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----- 171 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW----- 171 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 9999999999999999999999999996 7888899999999999999999999988899988887777665543
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHH-------H-------------hhhc
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLW-------Y-------------AITN 278 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~-------------~~~~ 278 (530)
+||+.|++.++..+ ..++.....|+.++.+. +++.....++..+... . .+..
T Consensus 172 ----~w~~~f~~~~~~~~-~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (496)
T PRK03893 172 ----GWRALFFIGILPII-FALWLRKNLPEAEDWKE---KHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAG 243 (496)
T ss_pred ----CHHHHHHHHHHHHH-HHHHHHHhCCCchhhhh---hccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987543322 22222222333221110 1000000000000000 0 0000
Q ss_pred h--hHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 037413 279 Y--RTW-----------------------------IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMA 327 (530)
Q Consensus 279 ~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 327 (530)
. ..+ ...+..+...........++|.|+.+.+|++..+.+.+.+...++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~ 323 (496)
T PRK03893 244 NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFG 323 (496)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 0 000 000000000111112446789999878999999999999999999
Q ss_pred HHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc-C-CcHHHHHHHHHHHHHHhhhhhccccccc-cccc
Q 037413 328 NIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR-A-STLPLSILSMILFSITTQAACGATFGII-PFIS 404 (530)
Q Consensus 328 ~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 404 (530)
.+++.++.|++.||+++|+ ....+..+..+..+.... . .+.+......++.++......+....++ +..|
T Consensus 324 ~~~g~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (496)
T PRK03893 324 AAVGCCVGGFLGDWLGTRK-------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFD 396 (496)
T ss_pred HHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCC
Confidence 9999999999999999884 333343333333322222 2 2222222222332322223334444454 4667
Q ss_pred cccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHH
Q 037413 405 RRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISL 444 (530)
Q Consensus 405 ~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 444 (530)
++.+|+++|+.+....+|+.++|.+.|. .+..++...+..
T Consensus 397 ~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~ 437 (496)
T PRK03893 397 TEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALAS 437 (496)
T ss_pred HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHH
Confidence 7899999999999999999999999887 455555544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=275.61 Aligned_cols=354 Identities=32% Similarity=0.539 Sum_probs=270.1
Q ss_pred HHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
++..++++++.+..+..+.++.|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345778888888888999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc-CCCCC
Q 037413 144 SMVFVS-SARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA-GATPF 221 (530)
Q Consensus 144 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~-~~~~~ 221 (530)
++++++ +++.+++.|+++|++.+.+.....++++++|+++|++++++.....++|..+++.+++.+....... +..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999 9999999999999996666677889999999999999999999888999999998888776654221 11123
Q ss_pred CchhHHH-HHHHHHHHHHHHHHHHhccCCCCCCccccccCCC----CCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 037413 222 TAWRIAF-FAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGD----VPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIEL 296 (530)
Q Consensus 222 ~~wr~~f-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (530)
.+||+.| ++.+++.++..++.+++.++.|++++++.+.+.+ ..++...+..++.+++|++|...+..++......
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFL 242 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 4899999 5556666666666666666655432211111100 0001111255677888999888888777777777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCC--c
Q 037413 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAS--T 374 (530)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 374 (530)
....+.|.|+++.+|+++.+++.+.+...+.+++++++.|++.||+++|+. ..........+..++.+.... +
T Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 317 (366)
T TIGR00886 243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK-----LLMSFLGVAMGAFLVVLGLVSPLS 317 (366)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh-----HHHHHHHHHHHHHHHHhcCCCcch
Confidence 888899999999899999999998888999999999999999999998741 111122222222222222232 4
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHH
Q 037413 375 LPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGS 423 (530)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 423 (530)
.+.......+..++.+...+..++++.+..++++|+++|+.+..+++|+
T Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 5555555566666777777777777777777899999999998887763
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=276.12 Aligned_cols=380 Identities=18% Similarity=0.205 Sum_probs=271.2
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
++..+....+.+...+.++..+....|.+++ +|+++++.+++.+++.++..++.++.|+++||+|||+++.++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4555666667777777777777777888876 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh----hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHH-HHH
Q 037413 141 TVFSMVFV----SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYE-LIR 214 (530)
Q Consensus 141 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~ 214 (530)
+.++.++. ++++.+++.|++.|++.+. ++.....+.|++|+++|++++++.+.+.++|..+++.+.+.... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~- 182 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN- 182 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh-
Confidence 98887764 5678889999999999995 77788889999999999999999999888888887766554332 22
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc----ccccC-----CCCCCC--ChhHH-HHHhhhchhHH
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLN----TLQKK-----GDVPTD--KFPKV-LWYAITNYRTW 282 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~-----~~~~~~--~~~~~-~~~~~~~~~~~ 282 (530)
+||+.|++.++++++..++.+++.||.|+.... +.+.+ .++.+. +..+. .+..++++.+|
T Consensus 183 --------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T TIGR00712 183 --------DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLW 254 (438)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHH
Confidence 899999999999888877777777776653210 00000 000011 11122 13467889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 283 IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
...+..++.+...+.+.+++|.|+++..|+++.++++...+..+.++++++++|++.||+++++.. ........+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~----~~~~~~~~~~ 330 (438)
T TIGR00712 255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG----ATGVFFMTLV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----HHHHHHHHHH
Confidence 888877777777778888999999998899999999999899999999999999999999754211 1111111111
Q ss_pred HHHHHH--hhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHH-Hhhhhhhhh-ccCCC
Q 037413 363 GIFCIC--LGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGS-GLTQLLFFT-SSRHS 437 (530)
Q Consensus 363 ~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~-~~~~~~~~~-~~~~~ 437 (530)
.+..+. .....+.+.....++..+++........... .+..+++.+|++.|+.+...++++ +++|.+.|. .+..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 331 TIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence 111111 1112233333333334443322221111223 356677899999999999988875 689999887 45556
Q ss_pred cchhHHHHHHHHHHHHH
Q 037413 438 TATGISLMGIMIVCCTF 454 (530)
Q Consensus 438 ~~~~~~~~~~~~~~~~~ 454 (530)
+...+.....+.+++.+
T Consensus 411 ~~~~~~~~~~~~~~~~~ 427 (438)
T TIGR00712 411 WDGGFMVMIGGSILAVI 427 (438)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 66666555444444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=272.14 Aligned_cols=377 Identities=10% Similarity=0.042 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTV 142 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 142 (530)
+.+...+++.+............++.+.+++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 34444555555444444444445666778999999999999999999999999999999999999999999999999887
Q ss_pred HHHH---h-hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhh-hhHHhHHHHHHHHHHhc
Q 037413 143 FSMV---F-VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGG-GITQLLTPFIYELIRRA 216 (530)
Q Consensus 143 ~~~~---~-~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~~~~~ 216 (530)
+++. + .++++.+++.|+++|++.+. .+.....+.+++|+++|++++|+.+...++|. .+++.+++.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~--- 169 (402)
T TIGR00897 93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF--- 169 (402)
T ss_pred HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 7653 3 35888999999999999885 56667888899999999999999999988886 46777766655443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 037413 217 GATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIEL 296 (530)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (530)
||+..++......++..++.+++.++.+++++++ ++++.++..+.++.++++|++|...+..++.....+
T Consensus 170 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
T TIGR00897 170 ------GEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----TREKFSELGKAATILFTNPNVLLGGMVRIINTIGLF 239 (402)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHhccCCCCCccccc----CCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 7666555554444444444555555543322111 111112233456678899999988888777777778
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCc
Q 037413 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG--RAST 374 (530)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 374 (530)
.+.++.|.|+.+ +|++..+.+.+.+...++..++.++.|+++||++||+.. .....+...+..+.+.... ..++
T Consensus 240 ~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~~ 315 (402)
T TIGR00897 240 GFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV---RWFGGVGCGIFTLALYYIPQHFGHS 315 (402)
T ss_pred HHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH---HHHHHHHHHHHHHHHHHHHHccCCc
Confidence 888899988865 899999999988888999999999999999999987411 0111111112112221111 1234
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHH
Q 037413 375 LPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCT 453 (530)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 453 (530)
.+..++..++.|++.+...+ ......+.+|+++|++.|+.+...++++.++|.+.+. .+..+....++..+.+.++..
T Consensus 316 ~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 316 FAVALIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 55555666667776655433 3334456777899999999999999999999999887 555565566665555554444
Q ss_pred HHHH
Q 037413 454 FPVA 457 (530)
Q Consensus 454 ~~~~ 457 (530)
+..+
T Consensus 395 ~~~~ 398 (402)
T TIGR00897 395 FLTA 398 (402)
T ss_pred HHHH
Confidence 4433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=275.69 Aligned_cols=362 Identities=14% Similarity=0.115 Sum_probs=249.9
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHH-HHH-----HHHHHHhhhhhHHHhhhhCCchhhHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAG-IAS-----VSGSIFSRLVMGAVCDLLGPRYGCAFL 134 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~l~~~ 134 (530)
+++....++++.++.++|+..+++..|.+.++++.++.+.+.+. +.. .++..+++++.|+++||+|||+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 45567788999999999999999999999999999888765443 222 223347899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhH
Q 037413 135 IMLSAPTVFSMVFVSSAR--------GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLL 205 (530)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 205 (530)
.++++++.++++++++++ .++++|+++|++.+. ++....+++|++|+++|++++++.....++|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 468999999999996 77788999999999999999999998888888888887
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHH
Q 037413 206 TPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFV 285 (530)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (530)
++.+...+.... .+..|||++|++..+.. +..++..+..||+++.. ++++ +.+..+.++...++++.+...
T Consensus 173 g~~l~~~~~~~~-~~~~gWr~~f~~~~~~~----~~~~~~~~~~~e~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK15075 173 GYLLNQWLSPAQ-MAEWGWRIPFLIGCLIV----PFIFLIRRSLEETEEFL-ARKH---RPSMREIFRSLAANWRIVLAG 243 (434)
T ss_pred HHHHHHhCCHHH-HhccchHHHHHHHHHHH----HHHHHHHHhcCCCHHHH-Hhhh---ccccccHHHHHHHhHHHHHHH
Confidence 777654321100 12339999999754332 11222222223321100 0111 111223344445555555443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH
Q 037413 286 -LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI 364 (530)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~ 364 (530)
+..++....++....|.|.|+++.+|++..+.+++..+..++++++.++.|+++||++||+ ....+..+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-------~~~~~~~~~~~ 316 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-------VLIAFTVLAIL 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHH
Confidence 3333444556677888999999888999999988888888999999999999999999884 22222222111
Q ss_pred -HHH---HhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhH-HHHhhhhhhhh-ccCCC
Q 037413 365 -FCI---CLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNF-GSGLTQLLFFT-SSRHS 437 (530)
Q Consensus 365 -~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~~~-~~~~~ 437 (530)
.+. .....++........++.+++.+...+..+.+ .+..|++.|+++.|+.+..... ++.++|.+.+. .+..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 317 TAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 111 11122333333333344455555555555555 4577888999999997665554 57889998877 44444
Q ss_pred c
Q 037413 438 T 438 (530)
Q Consensus 438 ~ 438 (530)
.
T Consensus 397 ~ 397 (434)
T PRK15075 397 D 397 (434)
T ss_pred C
Confidence 3
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=270.29 Aligned_cols=363 Identities=12% Similarity=0.059 Sum_probs=266.7
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
....+..+++.+++..+......+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44556677777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH--
Q 037413 141 TVFSM---VFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR-- 214 (530)
Q Consensus 141 ~~~~~---~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-- 214 (530)
+.+++ .++++++.++++|+++|+|.+. .+....++.++.++++|...+++.+....+|..+++.+++.+.....
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~ 183 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99885 4688999999999999999996 78888888898777777778999999999999999988765541000
Q ss_pred ------------h-cCCCC--CCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhch
Q 037413 215 ------------R-AGATP--FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNY 279 (530)
Q Consensus 215 ------------~-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (530)
. .++.. ..+||++|+....+..+..++..+ ++.|+.+.++ +.+++..+..+..++++++|
T Consensus 184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~--~~~p~~~~~~---~~~~~~~~~~~~~~~ll~~~ 258 (438)
T PRK10133 184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML--TKFPALQSDN---HSDAKQGSFSASLSRLARIR 258 (438)
T ss_pred cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCccc---cccccccchhhhHHHHHhCc
Confidence 0 00000 026777886544333333222211 1223221110 01111122345567888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHH
Q 037413 280 RTWIFVLLYGMSLGIELTIDNVIAEYF-FDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358 (530)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~ 358 (530)
.++...+..++..........|.+.|+ ++.+|+++.++++......++.++|+++++++.||+++|+ .+..+
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~-------~l~~~ 331 (438)
T PRK10133 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-------VLAAY 331 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHH
Confidence 988877777777777777778888886 5578999999999999999999999999999999999874 33344
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCC
Q 037413 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHS 437 (530)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~ 437 (530)
..+..+.+++....++. .....+.+.+++.+..+|..++...+..+++.+++.++.. ...+|+.++|.+.|. .+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 332 ALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 44433333333333333 2345667789999999999999865545566778888886 455778888888776 44443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=279.18 Aligned_cols=379 Identities=16% Similarity=0.187 Sum_probs=285.7
Q ss_pred chHHHHHHHHHHHHhhhhccccc-cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAA-PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
+..++..+++.++..+.+...+. ..+-.+.+|.+....+.+.+.+++.++++++.+++|.+.||++..+.+....++++
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~ 122 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG 122 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence 45566677788888888866654 23333669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 140 PTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
+-.++....+|++.+++.|++.|+..++ +|....+++.||.++||++.+|++.+..++|.++|.+++..+.. ..+.
T Consensus 123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~---~~~~ 199 (495)
T KOG2533|consen 123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK---LNGS 199 (495)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh---hcCC
Confidence 9888888899999999999999999996 99999999999999999999999999999999888877666544 2333
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc----c-------ccccCCCC--CCCChhHHHHHhhhchhHHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL----N-------TLQKKGDV--PTDKFPKVLWYAITNYRTWIFV 285 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~----~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 285 (530)
....||||.|++.|+++++.+++.++++|+.|++.+ + +.++++.. .++..+..+++.+++|++|.++
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~ 279 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFS 279 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHH
Confidence 456699999999999999999999999999998431 0 11111111 1113467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhcc----CCCCCcchhHHHHHHHHH
Q 037413 286 LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAA----RPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~----~r~~~~~~~~~~~~~~~~ 361 (530)
+..++.....+++.+|+|.|+.+..|++..+++.+.....++++++.++.|+++||++ +| ........+.
T Consensus 280 l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~------~~~~~~~~~~ 353 (495)
T KOG2533|consen 280 LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR------LLFIVFLCLY 353 (495)
T ss_pred HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHH
Confidence 9999999999999999999999966799999999999999999999999999999953 33 1222222233
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-cccc-ccccchhhhhhhhhhHHHHhhhhhhhh--ccCCC
Q 037413 362 GGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISR-RSLGVISGLTGAGGNFGSGLTQLLFFT--SSRHS 437 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~~~--~~~~~ 437 (530)
..++...+.............+....+.....+......+ ...+ .++-+..++.....+.+++++|.++-. ...+.
T Consensus 354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~ 433 (495)
T KOG2533|consen 354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG 433 (495)
T ss_pred HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence 3333333333343444444444444445555555555543 3333 345555666666677777777777654 22345
Q ss_pred cchhHHHHHHH
Q 037413 438 TATGISLMGIM 448 (530)
Q Consensus 438 ~~~~~~~~~~~ 448 (530)
....++.....
T Consensus 434 ~~~~f~~~~~~ 444 (495)
T KOG2533|consen 434 WGAVFYMLVAA 444 (495)
T ss_pred hhhHHHHHHHH
Confidence 55555433333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=271.52 Aligned_cols=359 Identities=11% Similarity=0.059 Sum_probs=246.0
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHH-HHHhc--CCChhhHHHHH-----HHHHHHHHHhhhhhHHHhhhhCCchhhH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNL--NLIKTDIGNAG-----IASVSGSIFSRLVMGAVCDLLGPRYGCA 132 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 132 (530)
+++.+...+++++++++|...++.+.|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 4567778888999999999988877764 55565 67766 45543 3455677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHH
Q 037413 133 FLIMLSAPTVFSMVFVSSAR--------GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQ 203 (530)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 203 (530)
++.+++++++++++++++++ .++++|+++|++.|. ++....++.|++|+++|++..+..+.+..+|..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 588999999999996 788889999999999999999998888888877776
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHH
Q 037413 204 LLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWI 283 (530)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (530)
.+...+........ ....|||++|++.+++.++. +......||.|+..+++ .+.++.+++ ....+..+++|+.|.
T Consensus 179 ~~~~~l~~~~~~~~-~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~~ 253 (438)
T PRK09952 179 GLVSLISMMTTDEQ-FLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQ--HEQAAAKKR-IPVIEALLRHPGAFL 253 (438)
T ss_pred HHHHHHHHhCCHHH-hhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHH--hhccccccc-CCHHHHHHHchHHHH
Confidence 65555443221100 01349999999887765432 22222233333211111 010111111 112234566777766
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 284 FVL-LYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 284 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
..+ ..++.....+....|.|.|+.+.+|++......+....++..+++.++.|+++||++||+ ....+.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-------~~~~~~~~~ 326 (438)
T PRK09952 254 KIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-------VYITGALIG 326 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHH
Confidence 654 334445566667789999998888998876655555667778888999999999999984 222332222
Q ss_pred HHHHH---Hhh-cCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhh-HHHHhhhhhhhh
Q 037413 363 GIFCI---CLG-RASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGN-FGSGLTQLLFFT 432 (530)
Q Consensus 363 ~~~~~---~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~~~ 432 (530)
.+... ... ..+..+......++.+++.+...+..++++ +.+|++.|+++.|+.+.... +++.++|.+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~ 402 (438)
T PRK09952 327 TLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAA 402 (438)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 22211 111 122333334445555666666667677775 46777889999999766654 788999999877
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=282.80 Aligned_cols=353 Identities=12% Similarity=0.039 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
.+..++++.++..++.....+..|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45667788888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 144 SMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
++++++|++.++++|+++|++.+. .+....++.|++|+++|+++++++.....+|..+++.+++.+.+..
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------- 153 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY--------- 153 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc---------
Confidence 999999999999999999999996 7888899999999999999999999999999988888877766543
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc-------------------cCCCCCC-CC---------------
Q 037413 223 AWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQ-------------------KKGDVPT-DK--------------- 267 (530)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------------~~~~~~~-~~--------------- 267 (530)
+||+.|++.++++++..++.++..|+.++.++++.+ +.++... .+
T Consensus 154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (485)
T TIGR00711 154 HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAII 233 (485)
T ss_pred CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 999999999988887777777766654332211110 0000000 00
Q ss_pred ----------hhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhH
Q 037413 268 ----------FPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGL 337 (530)
Q Consensus 268 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 337 (530)
......+.+++|.++...+..++.....+....++|.|+++.+|+++.+++++.....++.+++.++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 234 AFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred HHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000124678888888877777777777778888999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh--c--CCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchh
Q 037413 338 MSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG--R--ASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVIS 412 (530)
Q Consensus 338 l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~ 412 (530)
+.||++||+ ...++..+.+++..++. . ..+.+......++.|++.+...+..... .+.+|+++++++.
T Consensus 314 l~~r~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 314 MGDKIDPRK-------LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGS 386 (485)
T ss_pred HHhhcCcHH-------HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHH
Confidence 999999873 44555555555444443 1 2344555666777888887776555554 5678889999999
Q ss_pred hhhhhhhhHHHHhhhhhhhh
Q 037413 413 GLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 413 g~~~~~~~~g~~~~~~~~~~ 432 (530)
|+.+...++|+.+++.+.+.
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=280.31 Aligned_cols=346 Identities=20% Similarity=0.269 Sum_probs=266.4
Q ss_pred HHHHHHhhhhccccccchH-HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 037413 69 WLSFFTCFVSTFAAAPLVP-IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF 147 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 147 (530)
+++.++..+......+..| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 4566666777777888888 899999999999999999999999999999999999999999999999999999777777
Q ss_pred hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhH
Q 037413 148 VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRI 226 (530)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~ 226 (530)
++|++.+++.|++.|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+.+.. +||+
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---------~~~~ 152 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF---------GWRW 152 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---------HHCC
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc---------cccc
Confidence 78888999999999999986 7888999999999999999999999999999999888887776444 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCC-CCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 227 AFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGD-VPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
.|++.+++.++..++..++.++.|++++++.+++.+ +.+++..+.++...++|.+|...+..++..........++|.|
T Consensus 153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 153 AFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence 999999999888776555555544332221111110 0111112235666777777745555555555666788899999
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 037413 306 FFDRFNLK-LHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMIL 384 (530)
Q Consensus 306 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (530)
+.+.+|.+ ..+.+.+.++..+..+++.++.+++.||+++|+ ..........+..+.+.......+....+...++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR----RLLIAILLLILGALGLLLLPFSSSPVWLIIALFL 308 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88889999 899999999999999999999999999999863 2223333333333333333333445566667778
Q ss_pred HHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhh
Q 037413 385 FSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQ 427 (530)
Q Consensus 385 ~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~ 427 (530)
.|++.+...+....+. +..|++++|++.|+.+...++++.++|
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8888888888888885 567789999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=272.31 Aligned_cols=346 Identities=12% Similarity=0.063 Sum_probs=273.8
Q ss_pred HHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh
Q 037413 69 WLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV 148 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 148 (530)
+.+.++..+......+.+|.+..+++.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666777888899999999999999999999999999999999999999999999999999999988888
Q ss_pred h-----hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 149 S-----SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 149 ~-----~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
+ +++.+++.|+++|++.+. .+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--------- 155 (365)
T TIGR00900 85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL--------- 155 (365)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 7 999999999999999996 7788899999999999999999999999999999999998888776
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-HH
Q 037413 223 AWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTID-NV 301 (530)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 301 (530)
+||+.|++.++..++..++.++..+ |++++++.++.+++..++..+.++..+++|.++...+..++......... .+
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (365)
T TIGR00900 156 GIKWAIWVDAVGFAISALLIVSVRI--PELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVAL 233 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc--ccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988766655544443322 22111110100001111234456677888988887777766666665555 67
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc-HHHHHH
Q 037413 302 IAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST-LPLSIL 380 (530)
Q Consensus 302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 380 (530)
.|.|..+.+|.+..+.+.+.....++.+++.++.+++.||.+||+ ....+..+.++.+......++ .+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (365)
T TIGR00900 234 FPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-------LMTGAIFVIGLAILVVGLTPPNFPLFLV 306 (365)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 888888778999999999999999999999999999999998873 444444445554444444443 666677
Q ss_pred HHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 381 SMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 381 ~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
..++.+++.+...+...++. +.+|+++|+++.|+.+...+++..++|.+.|.
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 307 LWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777774 57788899999999999999999999999776
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=267.56 Aligned_cols=366 Identities=14% Similarity=0.108 Sum_probs=277.8
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+..++.+.++++..+++++|++.+....+.+++.||++++..|++.+.+.+.+.+++++.|+++|||+||+++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcC
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAG 217 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 217 (530)
.++.++++++..||+++++|.+.|+|.+. .+.++.+++|.||.++|++.+++++....+|..+|.+.+..+....
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---- 184 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---- 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc----
Confidence 99999999999999999999999999996 7899999999999999999999999999999999998888776653
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCC--CCCCChhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 037413 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGD--VPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295 (530)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (530)
..|||.|+..++++++++++.+++.+|+++..+++.+.+.+ .+..+.+++++...+++.+....+.+....+..
T Consensus 185 ----~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~ 260 (493)
T KOG1330|consen 185 ----FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI 260 (493)
T ss_pred ----cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence 13999999999999999999999988844433333333222 334456788888888888777777766666665
Q ss_pred HHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhH----HHHHHHHHHHHHHHH
Q 037413 296 LTIDNVIAEYFF---DRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLW----NLYIVQTLGGIFCIC 368 (530)
Q Consensus 296 ~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~----~~~~~~~~~~~~~~~ 368 (530)
..+..|.|.++. +..|.+..+..++..+...++.+|.+++|.++||+.|+...-.+.. ....+..+....+.+
T Consensus 261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 565556665544 3346677777778888899999999999999999766432211111 111122222222222
Q ss_pred hhc-CCcHHHHHHHHHHHHHHhhhhhccc--cccccccccccccchhhhhhhhhhHH-HHhhhhhhhh
Q 037413 369 LGR-ASTLPLSILSMILFSITTQAACGAT--FGIIPFISRRSLGVISGLTGAGGNFG-SGLTQLLFFT 432 (530)
Q Consensus 369 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~g-~~~~~~~~~~ 432 (530)
... ..+.....+.+++.|.......... ..+.+.++|++|.++.++...+..+. .+-+|++.|.
T Consensus 341 ~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 341 FPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence 222 2222233333444444333322222 22356789999999999998877754 4666657666
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=273.98 Aligned_cols=354 Identities=9% Similarity=-0.032 Sum_probs=275.3
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
.+.++.++++.++..++...+.+..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34456677788888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCC
Q 037413 142 VFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATP 220 (530)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 220 (530)
.++++++++++.++++|+++|++.+. .+....++.|++|+++|+++.++.....++|..+++.+++.+.+..
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~------- 161 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA------- 161 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-------
Confidence 99999999999999999999999996 7788899999999999999999999999999999998888887655
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc-c----------------cCCCC--------------------
Q 037413 221 FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTL-Q----------------KKGDV-------------------- 263 (530)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~----------------~~~~~-------------------- 263 (530)
+||+.|++..++..+..++.....|+.+++.++.. . .+.+.
T Consensus 162 --gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (471)
T PRK10504 162 --SWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALL 239 (471)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHH
Confidence 99999999988877777766666555443321100 0 00000
Q ss_pred -------CCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 037413 264 -------PTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGG 336 (530)
Q Consensus 264 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 336 (530)
..++. ....++++||.++...+..++..........+.|.|++...|.++.+.++......++.+++.++.+
T Consensus 240 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (471)
T PRK10504 240 LYLLHARNNNRA-LFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV 318 (471)
T ss_pred HHHHHHhcCCCC-ccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0112467888888877777776666666667788888877899999999998888888888889999
Q ss_pred HhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchh
Q 037413 337 LMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR---ASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVIS 412 (530)
Q Consensus 337 ~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~ 412 (530)
++.||+++|+ .+..+..+.++...++.. ..+.+......++.|++.+...+....+ .+.++++.++.++
T Consensus 319 ~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 391 (471)
T PRK10504 319 QVVNRFGYRR-------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGN 391 (471)
T ss_pred HHHHHcCchH-------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchH
Confidence 9999999884 444444444443333222 1233333344556667777666666666 4577888999999
Q ss_pred hhhhhhhhHHHHhhhhhhhh
Q 037413 413 GLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 413 g~~~~~~~~g~~~~~~~~~~ 432 (530)
|+.++...+|..+++.+.+.
T Consensus 392 ~~~~~~~~~g~~ig~~i~g~ 411 (471)
T PRK10504 392 SLLSMIMQLSMSIGVTIAGL 411 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=272.74 Aligned_cols=358 Identities=11% Similarity=0.063 Sum_probs=268.9
Q ss_pred HHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh---
Q 037413 71 SFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF--- 147 (530)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--- 147 (530)
..++..+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~ 104 (417)
T PRK10489 25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF 104 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence 34444445555667788888899999999999999999999999999999999999999999988888877665542
Q ss_pred --hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCch
Q 037413 148 --VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAW 224 (530)
Q Consensus 148 --~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~w 224 (530)
.++++.+++.|+++|++.+. .+...+++.+++|+++|+++.++.....++|..+|+.+++.+.+.. +|
T Consensus 105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~---------~~ 175 (417)
T PRK10489 105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG---------GV 175 (417)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---------hh
Confidence 56889999999999999885 6777899999999999999999999999999999999998888766 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 225 RIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAE 304 (530)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (530)
++.|++.++..++..++.+ ..|+.++++ +++++..++..+.++..+++|.++...+..++.. .......++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~ 248 (417)
T PRK10489 176 AWNYGLAAAGTFITLLPLL-RLPALPPPP-----QPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPA 248 (417)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCCCCC-----cccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHH
Confidence 9999988877666554443 444433221 1111112223445666778888766655444332 23456678899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 037413 305 YFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMIL 384 (530)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (530)
|+.+.+|.++...+++.+...++.+++.++.+++.||.++++ .+..+..+.++.++++...++.+...+..++
T Consensus 249 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 249 LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-------LMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-------HHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 998888999999999999999999999999999999865542 4444445555555555555666666667777
Q ss_pred HHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHH
Q 037413 385 FSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVC 451 (530)
Q Consensus 385 ~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 451 (530)
.|++.+...+...+++. ..|++.||+++|+.+...++|..++|.+.|. .+..+....+...+.+.++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~ 390 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI 390 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 78777766666666654 6677889999999999999999999999888 4455555555444443333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=270.01 Aligned_cols=334 Identities=16% Similarity=0.120 Sum_probs=274.3
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhh
Q 037413 90 RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS--SARGYIAARFMIGFSLAT 167 (530)
Q Consensus 90 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 167 (530)
..+++++..|.+++.+.+.+|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999998874 556789999999999996
Q ss_pred -hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHH-HHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 168 -FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYEL-IRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 168 -~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
+++...+.++|.|++||++..++..++..+|.+++..+++++.+. + ||+++|++.++++++..++++++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~---------GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL---------GWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC---------CCchHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998888888776 4 99999999999999999999999
Q ss_pred ccCCCCCCcc----cc---ccCC--CCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 037413 246 GQDLPDGNLN----TL---QKKG--DVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHT 316 (530)
Q Consensus 246 ~~~~p~~~~~----~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (530)
..|.|++.+. +. ++.. +..+++....++++++++.+|.+.+..++....++.+.+++|.|+.+.+|++..+
T Consensus 216 ~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~ 295 (466)
T KOG2532|consen 216 YSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE 295 (466)
T ss_pred hcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh
Confidence 9998887432 11 1111 1111113456889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhhccCCC--CCcchhHHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHHHhhhhh
Q 037413 317 AGVIAATFGMANIFARPLGGLMSDMAARPF--GMRGRLWNLYIVQTLGGIFCICLGRAST-LPLSILSMILFSITTQAAC 393 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 393 (530)
.|++.++..+...+..+++|.++||+.+|. ....+...-.++....++.++.+.+.+. .....+.++..+.+..+..
T Consensus 296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~ 375 (466)
T KOG2532|consen 296 TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFN 375 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccc
Confidence 999999999999999999999999998861 1134556666777777777777776653 2212222333333333333
Q ss_pred cccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 394 GATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 394 ~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
...... ..+..|++.+..+|+.+....+.++++|.+.+.
T Consensus 376 ~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~ 415 (466)
T KOG2532|consen 376 ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGI 415 (466)
T ss_pred hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 222222 334488999999999999999999999999887
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=265.81 Aligned_cols=357 Identities=13% Similarity=0.074 Sum_probs=263.3
Q ss_pred HHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHH-HHHHHHHHHHHHHhh
Q 037413 71 SFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAF-LIMLSAPTVFSMVFV 148 (530)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~ 148 (530)
.++...+......+.+|. +++++|.|..+.|++.+++.+...+.+++.|+++||+|||+.+++ +.++.+++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345555555566677775 678999999999999999999999999999999999999887654 566666777888999
Q ss_pred hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhh--HhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 149 SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLV--NGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 149 ~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
++++.+++.|+++|.+.+. .+....+..|+.++++|++. .+....+.++|..+++.+++.+.+.. +||
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---------~~~ 155 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF---------GFT 155 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc---------ccH
Confidence 9999999999999888775 67777888898887777654 57777778899999998888887665 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 226 IAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
+.|++.+++.++..++.++++||.|+.+.++ +.+ .+.+..+++|+++...+..++.+........++|.|
T Consensus 156 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
T TIGR00899 156 VMFLTAALAFVLCGVLVWLFLPSYPRGAPGA------LTR----LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLL 225 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCcccc------cCc----chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999988877777777777655432110 011 123345667777766555555555455556678889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 037413 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILF 385 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (530)
+.+.+|.++.+.+.+.....+..+++.++.|++.||+++|+ ...++..+..+.+..+...++.+..+...++.
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-------LMLLAALAGVAFYTGLAADNSLWALLMLQLLN 298 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999998887777778888999999999999884 33333333333333333344555555556666
Q ss_pred HHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHH
Q 037413 386 SITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCT 453 (530)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 453 (530)
+++.+...+....+..+..|++++++.++.+...++|..++|.+.+. .+..++...+...+++.+++.
T Consensus 299 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 367 (375)
T TIGR00899 299 AIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL 367 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 77777666666666666666777899999999999999999999887 455566666655554444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=264.72 Aligned_cols=367 Identities=13% Similarity=0.080 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHhcCCChhh-----HHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTD-----IGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
.+..+++..++..+......+.+|.+.+++|++..+ .|++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 345556667777777777788999999999998665 488899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
+++.++.+++++++.+++.|++.|++.+..+....++.+++|+++|++++++......+|..+++.+++.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----- 169 (408)
T PRK09874 95 GIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY----- 169 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 999999999999999999999999986656777788999999999999999999999999999998888887765
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHH-HHHHHHHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLL-YGMSLGIELT 297 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 297 (530)
+||+.|++.+++.++..+..+++.++.++..++ +++.+ .++..+.+++++++...+. ..........
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T PRK09874 170 ----GLRPVFFITASVLFLCFLVTLFCIRENFQPVSK-------KEMLH-MREVVTSLKNPKLVLSLFVTTLIIQVATGS 237 (408)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-------hhhhH-HHHHHHhCcCCchHHHHHHHHHHHHHHHHH
Confidence 999999999988887777777776664322110 00111 2334455677776553332 2333333344
Q ss_pred HHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc
Q 037413 298 IDNVIAEYFFDRFNLKLH---TAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST 374 (530)
Q Consensus 298 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
...+++.|+.+..+.... ..+.+..+.+++.+++.+..|++.||++||+ .+..+..+..+..+.....++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-------ILITALIFSVLLLIPMSFVQT 310 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHHHHHHhcc
Confidence 556677777764433222 2455566677888888999999999999884 444444444444444444456
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHH
Q 037413 375 LPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCC 452 (530)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 452 (530)
.+...+..++.|++.+...+...+.. ...+++++|+.+++.+....+|..++|.+.|. .+..++...+...+++.++.
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~ 390 (408)
T PRK09874 311 PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFN 390 (408)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 66666667778888877777766664 46677889999999999999999999999887 55566666666665555444
Q ss_pred HH
Q 037413 453 TF 454 (530)
Q Consensus 453 ~~ 454 (530)
.+
T Consensus 391 ~~ 392 (408)
T PRK09874 391 AV 392 (408)
T ss_pred HH
Confidence 43
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=262.69 Aligned_cols=349 Identities=15% Similarity=0.091 Sum_probs=268.2
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
.++.+.+.........+......+.+|.+.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~ 85 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 55666666666666667777777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.+++.++++++.+++.|++.|++.+. .+....+..|+++++++++++++...+..+|..+++.+++.+.+..
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------ 159 (394)
T PRK11652 86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF------ 159 (394)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 999999999999999999999999986 6677788899999999999999998888888888887777765544
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTID 299 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
+||+.|++.+++.++..++..+..||.++.+ +++++.++.+++.+++|+++...+..+........+.
T Consensus 160 ---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T PRK11652 160 ---GWRACYLFLLLLGAGVTFSMARWMPETRPAD---------ARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE 227 (394)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHhCCccCccc---------cchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776666666656543221 0111245667788889988876665555555555556
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc--CCcHHH
Q 037413 300 NVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR--ASTLPL 377 (530)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 377 (530)
.+.+.++.+.+|++..+.+++.....++.+++.++.+++.||.+++. .....+..+..+....... ..+.+.
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (394)
T PRK11652 228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLMWIPGWFGVMNVWT 301 (394)
T ss_pred HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 66777888888999999999888878888888888888888887321 1222222222222222221 234555
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhhc
Q 037413 378 SILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFTS 433 (530)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~ 433 (530)
.....++.+++.+...+...+...+..++++|++.++.+....+|+.+++.+.+..
T Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 302 LLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666777888887788887775545467889999999999999999999997763
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=271.33 Aligned_cols=356 Identities=15% Similarity=0.153 Sum_probs=271.4
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
.+++.+..+++.++....+.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666777777777777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 140 PTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
++.++..++++++.+++.|++.|++.+. .+...+++.|++|+++|++++++......+|..+++.+++.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----- 168 (398)
T TIGR00895 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF----- 168 (398)
T ss_pred HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-----
Confidence 9999999999999999999999999996 7888899999999999999999999999999999888887776554
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc-cc--------------------cCCCCCCCChhHH-HHHhh
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNT-LQ--------------------KKGDVPTDKFPKV-LWYAI 276 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~--------------------~~~~~~~~~~~~~-~~~~~ 276 (530)
+||+.|++.+++.++..++.+++.|+.++...++ .+ ..+.+.+++..+. .+..+
T Consensus 169 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (398)
T TIGR00895 169 ----GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALF 244 (398)
T ss_pred ----cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHh
Confidence 9999999998777777777777777654321100 00 0000001111111 22222
Q ss_pred h---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhH
Q 037413 277 T---NYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLW 353 (530)
Q Consensus 277 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~ 353 (530)
+ .+..+.+.+..++..........++| ++.+..|.+..+.+.+.+...++.+++.++.+++.||+++|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 316 (398)
T TIGR00895 245 QGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV------- 316 (398)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-------
Confidence 2 23344444444455555666677788 555668999999999999999999999999999999999862
Q ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 354 NLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.............++.....+.+..+...++.+++.+...+...++. +.+|++.|+++.|+.+....+|..++|.+.|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 22222222222222222244566666777788888888888887774 46678899999999999999999999999764
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=264.73 Aligned_cols=357 Identities=14% Similarity=0.031 Sum_probs=257.8
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
.++.+..+++..++..+......+.+|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 3455666777788888887777788886 688999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhh--------hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 140 PTVFSMVFV--------SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 140 ~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
++.+.+.++ .+++.+++.|+++|++.+. .+....++.+++|+++|++++++.+....+|..+|+.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 877765543 2577899999999999996 6777888999999999999999998988999999998888877
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHH
Q 037413 211 ELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGM 290 (530)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (530)
+.. |||+.+++.+++.++..+ +.++.|+.+.+ ++++.+ .++.++ +++.......+
T Consensus 173 ~~~---------g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~----~~~~~~--~~~~~~~~~~~ 227 (399)
T PRK05122 173 HWG---------GLAGLGLLIMLLALLGLL----LARPRPAVPPV------KGERLP----FRRVLG--RVWPYGMGLAL 227 (399)
T ss_pred Hcc---------cHHHHHHHHHHHHHHHHH----HHhcCCCCCCC------Cccchh----HHHHHH--HHHHHHHHHHH
Confidence 655 999998877655433222 22222332110 011111 222222 22222222223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 037413 291 SLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG 370 (530)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (530)
....+.....+++.|+.+ .|.+ ..+...+...++.++++++.+++.||+++|+ ....+..+.++...++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~ 297 (399)
T PRK05122 228 ASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR-------VAIVSLLVEILGLLLLW 297 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHH
Confidence 333444556677877765 4553 4456666778888999999999999999873 44444455555554544
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 371 RASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
..++.+..++..++.|++.+...+..... .+..+++++|++.|+++...++|..++|.+.|. .+..+++..+...+.+
T Consensus 298 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 377 (399)
T PRK05122 298 LAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA 377 (399)
T ss_pred HhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 45566666666778888887777665554 457788899999999999999999888888777 4555655555555444
Q ss_pred HHHH
Q 037413 449 IVCC 452 (530)
Q Consensus 449 ~~~~ 452 (530)
.+++
T Consensus 378 ~~~~ 381 (399)
T PRK05122 378 ALLG 381 (399)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=260.87 Aligned_cols=340 Identities=14% Similarity=0.104 Sum_probs=246.2
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF 147 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 147 (530)
..+..+..........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445557899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhH
Q 037413 148 VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRI 226 (530)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~ 226 (530)
+++++.+++.|+++|++.+. .+....++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+
T Consensus 88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~---------g~~~ 158 (392)
T PRK10473 88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF---------PWQS 158 (392)
T ss_pred hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------ChHH
Confidence 99999999999999999996 7788899999999999999999998888888888887776655433 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 227 AFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYF 306 (530)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (530)
.|++.+++.++..++.++..||.++++ + +++.+..+..++.+++++++...+...+.......+..+.|.++
T Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (392)
T PRK10473 159 LFYTMAAMGILVLLLSLFILKETRPAR----A----PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLL 230 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcc----c----CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999888887777777666643321 0 01112234556678888877666655555444455566678888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 037413 307 FDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFS 386 (530)
Q Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (530)
.+.+|++..+.+.+.+..+++.+++.++.+++.||+++|+ ...++..+..+..+.+....+.+.......+.+
T Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (392)
T PRK10473 231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT-------LMLTSQVLFLAAGITLALSPSHAVSLFGITLIC 303 (392)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999988999999999999999999999873 444444444444433333333333333334444
Q ss_pred HHhhhhhccccccccccc-cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 387 ITTQAACGATFGIIPFIS-RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.+.+...+..+.. +..| +++.|.+.++......+|..+++.+.+.
T Consensus 304 ~g~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~ 349 (392)
T PRK10473 304 AGFSVGFGVAMSQ-ALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV 349 (392)
T ss_pred HHHHHHhHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333332221 1112 2344555655555555666666666543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=259.55 Aligned_cols=342 Identities=12% Similarity=0.035 Sum_probs=259.8
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM 145 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 145 (530)
....+.....++....+.|..|.+++++|.++++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 88 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM 88 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 33333455555666677788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCch
Q 037413 146 VFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAW 224 (530)
Q Consensus 146 ~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~w 224 (530)
+++++++.+++.|+++|++.+. .+...+++.|+++++++++..+.......+|..+++.+++.+.+.. +|
T Consensus 89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------g~ 159 (401)
T PRK11043 89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---------GW 159 (401)
T ss_pred HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------Ch
Confidence 9999999999999999999885 5666789999999999999999888888888888888887776654 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 225 RIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAE 304 (530)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (530)
|+.|++.+++.++..++.+++.++.++++ +++....+++.+++|+++...+...+....+..+..+.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 228 (401)
T PRK11043 160 QAIFATLFAITLLLILPTLRLKPSKKARK-----------QSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPF 228 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccc-----------cchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999998888777666555433221110 1112346677888898887666665555666667778888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCcHHHHHHHH
Q 037413 305 YFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG--RASTLPLSILSM 382 (530)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 382 (530)
++++ +|++..+.++......++.+++.++.+++.||+++|+ ......+...+..+.+.... ..++.+...+..
T Consensus 229 ~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (401)
T PRK11043 229 ILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ----LLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF 303 (401)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 7765 7999999998887788888999999999999998763 11222222222222222221 223444445555
Q ss_pred HHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 383 ILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.+.+++.+..++...+...+..++++|++.|+.+.....++..++.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 304 CVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776666444346789999999999988888888888766
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=259.52 Aligned_cols=333 Identities=12% Similarity=0.086 Sum_probs=253.4
Q ss_pred ccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 79 TFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
...+.|.+|.+.+++|+++++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR 86 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
+++|++.+. .+....++.|++|+++|++++++......+|..+++.+++.+.+.. +||+.|++.+++.++
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~ 157 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF---------SWHAIFWVLALAAIL 157 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------ChHHHHHHHHHHHHH
Confidence 999999996 6778899999999999999999999999999999998888877765 999999999888887
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 037413 238 MGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTA 317 (530)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (530)
..++.++..||.+++++ +++.+.++..+.+++.+++|+++...+..++.+.....+..+.|.++.+.+|+++.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 232 (377)
T PRK11102 158 AAALVFFFIPETLPKER-----RQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNF 232 (377)
T ss_pred HHHHHHHhCCccCcccc-----cCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHH
Confidence 77777666666433211 0011111223456678888988877777666666666666777888888889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHH---HHHHHHHHhhc-CCcHHHHHHHHHHHHHHhhhhh
Q 037413 318 GVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT---LGGIFCICLGR-ASTLPLSILSMILFSITTQAAC 393 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 393 (530)
+.+.....++.+++.++.+++.||+++|+ ....+.. +.++.+..... ..+.+...+...+.+.+.+...
T Consensus 233 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 233 GYYFALNIVFLFVMTIINSRFVRRVGALN-------MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999874 2322222 22222222221 2233433333334443444434
Q ss_pred ccccccccccccccccchhhhhhhhhh-HHHHhhhhhhhh
Q 037413 394 GATFGIIPFISRRSLGVISGLTGAGGN-FGSGLTQLLFFT 432 (530)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~~~ 432 (530)
......+.+..|+.++++.++.+.... +|..+++.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 306 SNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455556889999999877655 566677766443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=272.92 Aligned_cols=362 Identities=13% Similarity=0.093 Sum_probs=242.2
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhc--------CCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNL--------NLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCA 132 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 132 (530)
+.+...++.++.+...++...+++..|.++++| +++..+.+++.+++.++..++++++|+++||+|||++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~ 89 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 455666677788888888888888889898887 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhh
Q 037413 133 FLIMLSAPTVFSMVFV------------SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGG 199 (530)
Q Consensus 133 ~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 199 (530)
++.++++++.++++++ ++++.++++|+++|++.|. .+...++++|++|+++|++++++.+.+..+|.
T Consensus 90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 169 (479)
T PRK10077 90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169 (479)
T ss_pred HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence 9999999998887763 2356788999999999996 88899999999999999999999988888888
Q ss_pred hhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc--ccccc--------CCCCCCCChh
Q 037413 200 GITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL--NTLQK--------KGDVPTDKFP 269 (530)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~--------~~~~~~~~~~ 269 (530)
.++++++..+..... ....+..+||++|++.+++.++..+. .+++||.|+... .+.++ .+..+.+...
T Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
T PRK10077 170 LVVYFVNYFIARSGD-ASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQAL 247 (479)
T ss_pred HHHHHHHHHHhccCc-ccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHH
Confidence 777665544432110 00112349999999998887776554 455677663210 00000 0000000011
Q ss_pred HHHHHhhh-----chhHHHH---HHHHH------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh
Q 037413 270 KVLWYAIT-----NYRTWIF---VLLYG------MSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLG 335 (530)
Q Consensus 270 ~~~~~~~~-----~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
+..++.++ .+..+.. .+... ...........+.|.++ +..|.+.....+.....++..+++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 326 (479)
T PRK10077 248 QEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLA 326 (479)
T ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 11122211 1111111 00100 00111122233445554 4478887777777777888899999999
Q ss_pred hHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh---cCCc-HHHHHHHHHHHHHHhhhh-hcccccccc-cccccccc
Q 037413 336 GLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG---RAST-LPLSILSMILFSITTQAA-CGATFGIIP-FISRRSLG 409 (530)
Q Consensus 336 g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~~~~~g 409 (530)
++++||++||+ .+..+..+.+++.+++. .... .......+++++++.+.. .+..+.++. .+|++.|+
T Consensus 327 g~l~dr~g~r~-------~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 399 (479)
T PRK10077 327 IMTVDKFGRKP-------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399 (479)
T ss_pred HHHHHHhcChH-------HHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence 99999999884 44444444444333322 1111 122233344444444433 244556644 56778999
Q ss_pred chhhhhhhhhhHHHHhhhhhhhh
Q 037413 410 VISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 410 ~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
++.|+.+...++++++++.+++.
T Consensus 400 ~~~g~~~~~~~~g~~~~~~~~p~ 422 (479)
T PRK10077 400 KALAIAVAAQWIANYFVSWTFPM 422 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999988777654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=260.20 Aligned_cols=369 Identities=10% Similarity=-0.025 Sum_probs=268.6
Q ss_pred HHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 037413 67 LSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV 146 (530)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 146 (530)
..+++.++..+.........+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.++++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 44556666555444444455667889999999999999999999999999999999999999999999999999998887
Q ss_pred hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 147 FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
++.+. ++.|+++|++.+. .+...+++.|++|+++|++++++.+....+|..+||.+++++.+. .|+
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----------~~~ 153 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----------HAE 153 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 77664 7889999999996 788899999999999999999999999999999999999988774 588
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 226 IAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
..+.+.+...++. ++..+.+|+.|++++++ +.+.....++.++..+.++++|.+....+...+.+.........++.|
T Consensus 154 ~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (393)
T PRK11195 154 AALAVCALIYLLA-ALFNLFIPRLGARRPGQ-SWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAW 231 (393)
T ss_pred HHHHHHHHHHHHH-HHHHhcCCCCccccccc-CCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776554433 33445555544221100 000000011123345667788877655554444444455555667778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 037413 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILF 385 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (530)
+++.+|.++.+.|++.+..+++.+++.++.+++.||.++++ .+..+.. .++....+...++.+......++.
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-------~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-------VLPAGIL-MGLVVLLMALQHSLLPAYPLLILI 303 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-------hHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999877653 3333332 233333333344555555666677
Q ss_pred HHHhhhhhccccccccccccc-c-ccchhhhhhhhhhHHHHhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 037413 386 SITTQAACGATFGIIPFISRR-S-LGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVAL 458 (530)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~~~-~-~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (530)
|++.+...+...+...+.+++ . +|++.++.+...+++..++..+++..+.++....+.+.++..+.+......
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 887777776666665555555 3 699999999999999999999988777777777777766666655544333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=259.76 Aligned_cols=357 Identities=13% Similarity=0.071 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
+.+..++++.++.++......|.+|. +++++|+|.+++|++.+++.+++.++++++|+++||+|||+++..+.+..+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 34555556666666666667777875 68899999999999999999999999999999999999999999998887766
Q ss_pred HHHHH--------hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHH
Q 037413 142 VFSMV--------FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYEL 212 (530)
Q Consensus 142 ~~~~~--------~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 212 (530)
.+... ..++++.++++|+++|++.+. .+...+++.+++|+++|++++++.+.+.++|..+++.+++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54332 136889999999999999996 677778999999999999999999998889999998888877665
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHH
Q 037413 213 IRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSL 292 (530)
Q Consensus 213 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (530)
. |||+.+.+..++.++.. .+.++.|+.+.++ +.+.+.++..+. +|...+..++..
T Consensus 175 ~---------g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~l~~ 229 (392)
T PRK12382 175 F---------GFAALALTTMVLPLLAW----AFNGTVRKVPAHA------GERPSLWSVVGL------IWKPGLGLALQG 229 (392)
T ss_pred c---------ChHHHHHHHHHHHHHHH----HHHHhccCCCCCc------ccCchHHHHHHH------HHHhHHHHHHHH
Confidence 5 89988776644433222 2223333321110 111122222222 222112222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC
Q 037413 293 GIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA 372 (530)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (530)
........+.+.|+.+ .|.+. .+.......++.++++++.|++.||+++|+ .+..+..+.++.+.++...
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~ 299 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-------VAIVSLLVETVGLLLLWLA 299 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-------ehHHHHHHHHHHHHHHHHc
Confidence 3344455677777765 46553 455566677788899999999999999875 3334444444444444445
Q ss_pred CcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHH
Q 037413 373 STLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIV 450 (530)
Q Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 450 (530)
++.+..++..++.+++.+...+..... .+..++++||++.|+.+...++|..++|.+.+. .+..++...+...+.+.+
T Consensus 300 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~ 379 (392)
T PRK12382 300 PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAV 379 (392)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 566666666777788777766666555 457788999999999999999999999999887 556677666666655554
Q ss_pred HHHH
Q 037413 451 CCTF 454 (530)
Q Consensus 451 ~~~~ 454 (530)
+..+
T Consensus 380 ~~~~ 383 (392)
T PRK12382 380 LGII 383 (392)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=256.81 Aligned_cols=353 Identities=13% Similarity=0.063 Sum_probs=254.8
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
.+.+..++++.++.........+.+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777778788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCC
Q 037413 142 VFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATP 220 (530)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 220 (530)
.+++++++|++.++++|+++|++.+. .+.....+.+..++++|+++++++..+.++|..+|+.+++.+....
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------- 157 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL------- 157 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------
Confidence 99999999999999999999999996 6777777888888899999999999999999988888777765432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 037413 221 FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN 300 (530)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (530)
.|.. ++..+....... ..++ .+..|+.+ + +++. +..++.+++|.++......+.....+.....
T Consensus 158 --~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~----~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (381)
T PRK03633 158 --MSVL-PWVTGLVLAAIL-PLLF-TRILNQQA----E---NHDS----TSIWPMLKLRQARLGVNGCIISGIVLGSLYG 221 (381)
T ss_pred --cchH-HHHHHHHHHHHH-HHHH-hcccCCCC----C---CCCC----CCHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 2222 222222222111 1122 22212111 0 0111 1234567788777654434333334445566
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHH
Q 037413 301 VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSIL 380 (530)
Q Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (530)
++|.|+++ .|.+..+.+.+.+...++.++++++.|++.||+++|+ .+..+..+..++.+... . ......
T Consensus 222 ~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-------~l~~~~~~~~~~~~~~~--~-~~~~~~ 290 (381)
T PRK03633 222 LMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-------VLRVQVFVVILGSIAML--S-QAAMAP 290 (381)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-------HHHHHHHHHHHHHHHHh--h-hHHHHH
Confidence 78988876 6999999999999999999999999999999999873 44444444444333322 1 122233
Q ss_pred HHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 381 SMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 381 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
...+.+++.....|...+. .+..++++++...+..+...++|..++|.+.|. .+..+....+...+.+
T Consensus 291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~ 360 (381)
T PRK03633 291 ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASV 360 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 4455566555566776666 456667777778888888888999999999887 4555555555443333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=254.47 Aligned_cols=352 Identities=14% Similarity=0.089 Sum_probs=263.8
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS 144 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 144 (530)
+..+++.+++..+.....+++.|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.+++++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45666677777777777889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh---hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc-C--
Q 037413 145 MVF---VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA-G-- 217 (530)
Q Consensus 145 ~~~---~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~-~-- 217 (530)
+.. .++++.+++.|++.|+|.|. .+....++.++.|+++|++.+++.+...++|..+++.+++.+....... +
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 654 46899999999999999996 7888899999999999999999999999999999998887775321000 0
Q ss_pred --------------CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHH
Q 037413 218 --------------ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWI 283 (530)
Q Consensus 218 --------------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (530)
..+..+||++|++.+++.++..++..+ .+ .|+.+++ ++ ++.+..+..++.+++|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~-~~-~p~~~~~--~~----~~~~~~~~~~~~~~~~~~~~ 236 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIML-TK-MPALNHS--DA----KQISFSASLSRLARIRHYRE 236 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCcc--cc----ccccchhhHHHHHhChhHHH
Confidence 001237999999999877766554432 22 2332111 00 11122234567789999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 284 FVLLYGMSLGIELTIDNVIAEYFFDRF-NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
..+..++..+.+....++++.|..+.. +.+...++...+....+..+|+++++++.||+++|+ .+.++..+.
T Consensus 237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-------~l~i~~~~~ 309 (410)
T TIGR00885 237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-------VLMAYAIIG 309 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHHHHHH
Confidence 888888888888788888999986532 445555565666666788999999999999998873 444555555
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-cc
Q 037413 363 GIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SS 434 (530)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~ 434 (530)
.+.+++....++.. ....+.+.+++.+..+|..+++. +..+++....+.++.... +|+.+.|++.|. .|
T Consensus 310 ~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 310 MALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence 55555554444433 35666777888888889988884 566655544444444433 899999999888 44
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=250.89 Aligned_cols=341 Identities=21% Similarity=0.284 Sum_probs=290.7
Q ss_pred HHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 037413 67 LSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV 146 (530)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 146 (530)
.+.+..+..........+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 34556667777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 147 FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
++++++.+++.|++.|++.+. .+....++.|++|+++|++.+++.....++|..+++.+++.+.+.. +||
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~ 153 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---------GWR 153 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---------hHH
Confidence 999999999999999999996 7888899999999999999999999999999999999888887765 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 226 IAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
+.+++.+++.++..+...+.. |+++...+..++..........+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T cd06174 154 WLFLILAILGLLLALLLLFLL--------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLY 201 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999988887776665551 566777777777777788888899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 037413 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILF 385 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (530)
+.+..|.+..+.+.......++..++.++.+++.||+++|+ ..+..+..+..+........++.+...+..++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 275 (352)
T cd06174 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR------LLLLIGLLLAALGLLLLALAPSLALLLVALLLL 275 (352)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 98877999999999999999999999999999999999882 045556666666666666666677777888888
Q ss_pred HHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHH
Q 037413 386 SITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 386 g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 454 (530)
+++.+...+....+.. ..|+++|++..|+.+...+++..++|.+.+. .+..++...+...+++.+++.+
T Consensus 276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i 346 (352)
T cd06174 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346 (352)
T ss_pred HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 9998888888888854 6667899999999999999999999999887 4456666666665555555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-30 Score=251.37 Aligned_cols=334 Identities=13% Similarity=0.021 Sum_probs=250.5
Q ss_pred HHHHhhhhccccccchH-HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh
Q 037413 71 SFFTCFVSTFAAAPLVP-IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS 149 (530)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 149 (530)
..++.....+...++++ .+++++|+|..++|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~ 97 (400)
T PRK11646 18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH 97 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333334344444 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHH
Q 037413 150 SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAF 228 (530)
Q Consensus 150 ~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f 228 (530)
+++.+++.|+++|++.+. .+...+++.+++|+++|++++++.....++|..+|+.+++.+. .. +||+.|
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~---------g~~~~f 167 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY---------DFRLVC 167 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---------hHHHHH
Confidence 999999999999999885 6777899999999999999999999999999999999998887 33 999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 229 FAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFD 308 (530)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (530)
++.+++.++.+++..++.|+.+++ +.+++..+.+++.+++|+++...+..+...........++|.|+++
T Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (400)
T PRK11646 168 ATGAVLFVLAAAFNAWLLPAYKLS----------TVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVND 237 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCccccc----------ccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 999888777666655554432111 0111233566778888988766655544444334445678888877
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhh-ccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 037413 309 RFNLKLHTAGVIAATFGMANIFARPLGGLMSDM-AARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSI 387 (530)
Q Consensus 309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (530)
..+ ++.+.+.+.+...+....+....+++.|| ++.+ .....+..+.++..+++...++.+...+..+++++
T Consensus 238 ~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 238 IAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-------HRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI 309 (400)
T ss_pred hcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 544 66788888777776666555555555554 4433 13334444455555455455555555555566777
Q ss_pred Hhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 388 TTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+.+...+...+++ +..|++++|++.|+.+...++|..++|.+.|.
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence 7777777777764 46788999999999999999999999999888
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=269.38 Aligned_cols=372 Identities=13% Similarity=0.047 Sum_probs=244.8
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCCC--------hhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNLI--------KTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
+.+..++..++...+.+..+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||+++.++.++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~ 112 (481)
T TIGR00879 33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFV 112 (481)
T ss_pred HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHH
Confidence 33444555566777778888888888777 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh---hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 140 PTVFSMVFV---SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 140 ~~~~~~~~~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
++.+++.+. .+++.++++|+++|++.+. .+....++.|++|+++|++++++.+.+.++|..+++.++ ......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~-- 189 (481)
T TIGR00879 113 IGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG-SGKVSL-- 189 (481)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcC--
Confidence 999998554 4566899999999999996 778889999999999999999999888888888887765 000111
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC----c-cccc----c-CCCCCCCC-h----------------
Q 037413 216 AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN----L-NTLQ----K-KGDVPTDK-F---------------- 268 (530)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~----~-~~~~----~-~~~~~~~~-~---------------- 268 (530)
....+||+.|++.++..++. ++..++++|.|+.. + ++.+ + .....++. .
T Consensus 190 ---~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
T TIGR00879 190 ---NNTLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR 265 (481)
T ss_pred ---CCCccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 12339999999966655544 44455566655310 0 0000 0 00000000 0
Q ss_pred -----hHHHHHhhh---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 037413 269 -----PKVLWYAIT---NYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSD 340 (530)
Q Consensus 269 -----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 340 (530)
+..++...+ .+.++...+..+...........+.|.++ +..|++..+.+.......++.+++.++.+++.|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (481)
T TIGR00879 266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD 344 (481)
T ss_pred hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 12222222322222222233344555554 557999988888888899999999999999999
Q ss_pred hccCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCc-----HHHHHHHHHHHHHHhhhh-hccccccc-cccccccc
Q 037413 341 MAARPFGMRGRLWNLYIVQTLGGIFCICLG-----RAST-----LPLSILSMILFSITTQAA-CGATFGII-PFISRRSL 408 (530)
Q Consensus 341 r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~g~~~~~~-~~~~~~~~-~~~~~~~~ 408 (530)
|++||+ ...++..+.+++++++. ...+ .+.......+++.+.+.. .+....+. +..|++.|
T Consensus 345 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 345 RFGRRP-------LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred HhcchH-------HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 999884 33334444333333322 1111 222223333333333333 34445553 45677789
Q ss_pred cchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHH
Q 037413 409 GVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 409 g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 454 (530)
+++.|+.+...++|++++|.+.+. .+..++...++..+.+.+++.+
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence 999999999999999999999776 4445555556555555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=263.09 Aligned_cols=365 Identities=12% Similarity=0.049 Sum_probs=244.4
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhc-----CCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNL-----NLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAF 133 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 133 (530)
+.+++.+.++.++.+...++....+...|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 44667777888888999999988888888887653 3456678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHH
Q 037413 134 LIMLSAPTVFSMVFVSS------ARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLT 206 (530)
Q Consensus 134 ~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 206 (530)
++++..++.++++++++ ++.++++|+++|++.|. .+....+++|++|+++|++++++.+....+|..+++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765 78999999999999996 788899999999999999999999999999998888877
Q ss_pred HHHHHHHHhc--C------------CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCC---C-cccc--c--------
Q 037413 207 PFIYELIRRA--G------------ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDG---N-LNTL--Q-------- 258 (530)
Q Consensus 207 ~~l~~~~~~~--~------------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~---~-~~~~--~-------- 258 (530)
..+...+... . ....++||++|.+.++++++..+ ..+++||+|+. + +++. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 6655432110 0 00123799999888777665444 44566887752 1 1100 0
Q ss_pred -c-C-CCCC-------CCChhHHHHHhhhc---hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---
Q 037413 259 -K-K-GDVP-------TDKFPKVLWYAITN---YRT----WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAG--- 318 (530)
Q Consensus 259 -~-~-~~~~-------~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 318 (530)
+ + ..++ ++.....+++++++ ++. +......++....+++...+.|.++.+ .|++....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~ 329 (502)
T TIGR00887 251 VKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNA 329 (502)
T ss_pred cccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhH
Confidence 0 0 0000 00011234444432 222 111222233334455566677888864 677643211
Q ss_pred --------H-HHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHH
Q 037413 319 --------V-IAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA----STLPLSILSMILF 385 (530)
Q Consensus 319 --------~-~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 385 (530)
. ...+..++.+++.++.++++||+|||+ .++++..+.++++.++... ..........+..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 402 (502)
T TIGR00887 330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-------IQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ 402 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-------HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 1 223344566778899999999999984 3334443333333222211 1111111111111
Q ss_pred HHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 386 SITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 386 g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.++.....+..+.+ .+.+|++.|+++.|+.+.++.++++++|.+++.
T Consensus 403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 450 (502)
T TIGR00887 403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY 450 (502)
T ss_pred HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 12222334455665 456677899999999999999999999999876
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=248.16 Aligned_cols=354 Identities=13% Similarity=0.017 Sum_probs=269.5
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhh----HHHHHHHHHHHH
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGC----AFLIMLSAPTVF 143 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~ 143 (530)
+.+.++..++......|.+|.+.+++|+|.+++|++.+++.+...++++++|+++||+|||... .++..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 5566666666667777889999999999999999999999999999999999999999985433 222222222 2
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 144 SMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
.+.++++++.+++.|+++|.+.+. .+...++..++ +++|++++|....+.++|.++++.+++.+.+..
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~--------- 155 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF--------- 155 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 444678999999999999999885 67766776654 467899999999999999999999888888876
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037413 223 AWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVI 302 (530)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (530)
|||..|++.++..+ ..++.+...++.+++++ +++ ++.+..+..++.+|+|++|...+..++.......+..+.
T Consensus 156 g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~ 228 (382)
T TIGR00902 156 DEQNILAILTAGLA-FMLIGFLIKPTIPPKDA---IPE---DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS 228 (382)
T ss_pred ChhHHHHHHHHHHH-HHHHHHHcCCCCCCCcc---ccc---cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988766533 23333333232112111 110 111113456788999999999888888888888888899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 037413 303 AEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSM 382 (530)
Q Consensus 303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (530)
|.|+++ .|.+..+.|.+.+...++.+++.++.+++.||++.|+ .+.++.++..+...++...++.+..+...
T Consensus 229 ~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~q 300 (382)
T TIGR00902 229 AIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-------LLLISAIACVGRWAIIGAIEAFPLIFLLQ 300 (382)
T ss_pred HHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-------HHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 999976 8999999999999888999999999999999999873 66677777777777777777888888888
Q ss_pred HHHHHHhhhhhccccccccccccccccchhhhhhh-hhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHH
Q 037413 383 ILFSITTQAACGATFGIIPFISRRSLGVISGLTGA-GGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIV 450 (530)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 450 (530)
++.++..+...+....++++.|+++++++.++++. ...+|..++|.+.|. .+..+. ..+...+.+.+
T Consensus 301 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~ 369 (382)
T TIGR00902 301 ILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence 99999999988888888775577788999999874 456888999999888 444443 34444444333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-29 Score=249.39 Aligned_cols=352 Identities=10% Similarity=0.001 Sum_probs=258.5
Q ss_pred HHHHHHHHHHhhhhccccccchH-HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVP-IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
+..+.+..++.........+.+| .+++++|++..++|++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 33444455555555555555554 57788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 144 SMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
+.+++++++.++++|++.|.+.+. .+....+..|.+++++|++++++.....++|..+++.+++.+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~--------- 158 (395)
T PRK10054 89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q--------- 158 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---------
Confidence 999999999999999998887775 56777899999999999999999999999999999988888764 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037413 223 AWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVI 302 (530)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (530)
+|+.+|++.+++.++..++..+..++.+++++ ++ + ++. ...++.+++|+++...+..++..........+.
T Consensus 159 g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~----~~-~---~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 229 (395)
T PRK10054 159 SINLPFWLAAICSAFPLVFIQIWVQRSEKAIA----TE-T---GSV-WSPSVLLQDKALLWFTCSGFLASFVSGAFASCI 229 (395)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccccccc----cc-h---hhh-hhhhhhccCceehHHHHHHHHHHHHHHHhhhhH
Confidence 89999999888877766655555544322110 00 0 011 223667889998888777666655555555566
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc-CCcHHHHH
Q 037413 303 AEYFFDR--FNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR-ASTLPLSI 379 (530)
Q Consensus 303 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 379 (530)
+.|+... .+.+....+.+.....+......+..+++.||.++|+ .+..+..+..+.+..+.. .++.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (395)
T PRK10054 230 SQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-------LMTAGTLCFVIGLVGFIFSGNSLLLWG 302 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-------HHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 6666533 3555666777777777777777788889999988773 444455444554444433 24555555
Q ss_pred HHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHH
Q 037413 380 LSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGIS 443 (530)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 443 (530)
+...+.+++.....|.....+. ..|++.+++..+..+ ...+|..+||.+.|. .|..+....+.
T Consensus 303 ~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~ 367 (395)
T PRK10054 303 MSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFV 367 (395)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHH
Confidence 6677788887776776666654 567778999988755 566899999999888 45554444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=265.97 Aligned_cols=344 Identities=13% Similarity=0.107 Sum_probs=244.3
Q ss_pred cchHHHHHhcCCC---hhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 037413 84 PLVPIIRDNLNLI---KTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFM 160 (530)
Q Consensus 84 ~~~~~~~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (530)
+..|.+.+|++++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMG 239 (530)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (530)
.|++.+. .+....++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------------~wr~~~~~~~i~~~~~~ 257 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------------DWRWLQLAVSLPTFLFF 257 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHH
Confidence 9999996 8888999999999999999999997777777766665543321 69999999998887766
Q ss_pred HHHHHhccCCCCCC----c-ccc-------cc---------------CCCCCCCChhHHHHHhhhchhHHHHHHHHHHHH
Q 037413 240 ILVLTLGQDLPDGN----L-NTL-------QK---------------KGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSL 292 (530)
Q Consensus 240 ~~~~~~~~~~p~~~----~-~~~-------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (530)
+.. +++||.|+.. + ++. .+ +++...+.....+++++++|.++...+...+.+
T Consensus 258 ~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 258 LLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred HHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHH
Confidence 655 5667766421 0 000 00 000000001135567788888777666554443
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC
Q 037413 293 GIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA 372 (530)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (530)
.........++ +..+..+.+... ...+.++..+++.++.+++.||+|||+ .+.++.++.++.++++...
T Consensus 337 ~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~-------~~~~~~~~~~~~~l~~~~~ 405 (505)
T TIGR00898 337 FTTAFSYYGLV-LDLGNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFV 405 (505)
T ss_pred HHHHHHHHHHh-ccccccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHc
Confidence 33222222222 223334555433 333556778889999999999999983 4555555555554444433
Q ss_pred Cc--HHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcchhHHHHHHHH
Q 037413 373 ST--LPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMI 449 (530)
Q Consensus 373 ~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (530)
++ .+......++.+++.+..++..+.+. +.+|++.|+++.|+.++...+|++++|.+.+ .+..+....+.+.+.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 406 PVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLA 484 (505)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHH
Confidence 32 24444455556666666677777774 4667789999999999999999999999987 34333334444444444
Q ss_pred HHH
Q 037413 450 VCC 452 (530)
Q Consensus 450 ~~~ 452 (530)
+++
T Consensus 485 ~~~ 487 (505)
T TIGR00898 485 LLA 487 (505)
T ss_pred HHH
Confidence 333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-29 Score=243.70 Aligned_cols=345 Identities=11% Similarity=0.059 Sum_probs=231.0
Q ss_pred HHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHH-HHHHhhhhhHHHhhhhCCchhh-HHHHHHHHHHHHHHH
Q 037413 70 LSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVS-GSIFSRLVMGAVCDLLGPRYGC-AFLIMLSAPTVFSMV 146 (530)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~ 146 (530)
+..++..+......|.+|. +++++|++.+++|++.+...+ ++.++.+++++ .||+|||+.+ ..+.++.+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555 688999999999999776544 66666655565 9999998875 556666678888888
Q ss_pred hhhhHHHHHHHHHHHHhhhh-hhhhHHHHHhhhccCCcc--hhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCc
Q 037413 147 FVSSARGYIAARFMIGFSLA-TFVSCQYWMSTMFNGKII--GLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTA 223 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (530)
++++++.+++.+.+.|...+ ..+....++.++.++++| +...++.+.+.++|..+++.+++.+.+.. |
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~---------g 171 (393)
T PRK15011 101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF---------S 171 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc---------C
Confidence 99999988766555444444 467777888888876655 34457788888899999999888887766 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHH
Q 037413 224 WRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITN-YRTWIFVLLYGMSLGIELTIDNVI 302 (530)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 302 (530)
||+.|++.+++.++.+++.++..||.+++++++ +.+.+. . .++ +..+.........+.....+..+.
T Consensus 172 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T PRK15011 172 FTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-----TGTLEA----P---RRNRRDTLLLFVICTLMWGTNSLYIINM 239 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-----cccccc----c---ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888777777777755432111 000010 1 112 222333333344444555566789
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 037413 303 AEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSM 382 (530)
Q Consensus 303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (530)
|.|+++.+|++..+.+.+.+...++.+++.++.|+++||+++|+ ....+.....+.+......++.+...+..
T Consensus 240 p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (393)
T PRK15011 240 PLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-------LMRVAAVAGVCFYAGMLMAHSPAILLGLQ 312 (393)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99998889999999998888777888889999999999999884 22233222222222222334444444444
Q ss_pred HHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHH
Q 037413 383 ILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGIS 443 (530)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 443 (530)
++.+++.+...+....+..+..|++++++.++++...++|..++|.+.|. .+..++...+.
T Consensus 313 ~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~ 374 (393)
T PRK15011 313 LLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFW 374 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444444444444444455556779999999999999999999999887 44444444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=248.11 Aligned_cols=385 Identities=15% Similarity=0.116 Sum_probs=314.3
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
+.|.+....++..+........++.+.+.++++++.+.++++|+.++....+.+..++.+.+.||+|.|.+.++|.++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 35666666677777777777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHH-HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcC
Q 037413 140 PTVFSMVFVSSARGYIAAR-FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAG 217 (530)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r-~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 217 (530)
+|.++.+|++++|++++.. ++.|+|.|. +.+...++..||++ +|+.+.|+..++.++|..+-+.+.-.+.+..
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~---- 197 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLSKY---- 197 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHHHh----
Confidence 9999999999999988865 899999996 78888888988875 7999999999999998887777766666666
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc---------------------ccc--cCCC------------
Q 037413 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLN---------------------TLQ--KKGD------------ 262 (530)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~---------------------~~~--~~~~------------ 262 (530)
|||+.+++.+.+.+-.++......|..++.... ... ....
T Consensus 198 -----G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (509)
T KOG2504|consen 198 -----GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLK 272 (509)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhh
Confidence 999999999999988888777776633332000 000 0000
Q ss_pred --CC-CC--ChhHHH----HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 037413 263 --VP-TD--KFPKVL----WYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARP 333 (530)
Q Consensus 263 --~~-~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 333 (530)
.+ .. .....+ .+++++|.++.+.+...+....++....++|.|.. ..|++..+++.+.++.++..+++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 273 RGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred hCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhh
Confidence 00 00 111122 57889999999999999999999999999999988 5899999999999999999999999
Q ss_pred hhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchh
Q 037413 334 LGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVIS 412 (530)
Q Consensus 334 ~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~ 412 (530)
+.|++.|+...+ ..+...++.++.++..+......+.+.++...+++|+..+......... .+.++.++...+.
T Consensus 352 ~~G~laD~~~~~-----~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~ 426 (509)
T KOG2504|consen 352 ILGLLADKPGIR-----ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAY 426 (509)
T ss_pred hhhhhcCccccc-----hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHH
Confidence 999999998843 2356667777777777777888888888999999999888777766544 5688899999999
Q ss_pred hhhhhhhhHHHHhhhhhhhh-cc-CCCcchhHHHHHHHHHHHHHHHHHhh
Q 037413 413 GLTGAGGNFGSGLTQLLFFT-SS-RHSTATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 413 g~~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
|+...+..++..+||++.|. .| ..++...++..+.+.+++.++..+..
T Consensus 427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999887 34 34478888888888887776655544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=248.46 Aligned_cols=365 Identities=12% Similarity=0.051 Sum_probs=255.3
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-----CCchh-hHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-----GPRYG-CAFLIMLS 138 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~ 138 (530)
....+...+...+.....++.+|...++.|.+.++++.+ +.....+ ++.+++|+++||+ |||+. +.++.++.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 445556666667777777788899899999999999996 4444444 5899999999999 98885 77888888
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHH-HH
Q 037413 139 APTVFSMVFV---SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYE-LI 213 (530)
Q Consensus 139 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~ 213 (530)
+++.++.++. ++++.+.+.+++.|++.+. .+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887777775 4788999999999999986 67778999999999999999999999999999888877766665 23
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHH
Q 037413 214 RRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLG 293 (530)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (530)
|||..|++.+++.++..+..++ .||+++.+ +++ ++.+++..+.+++.++++..|...+..++...
T Consensus 172 ---------GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~ 236 (491)
T PRK11010 172 ---------GWQGMYWLMAALLIPCIIATLL-APEPTDTI----PVP-KTLEQAVVAPLRDFFGRNNAWLILLLIVLYKL 236 (491)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHh-cCCCcccc----ccc-cchhhhHHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 9999999999887766555444 56543221 000 11111123456677777877766665555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHH---HHHHHHHHh
Q 037413 294 IELTIDNVIAEYFFDRFNLKLHTAGVIAA-TFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT---LGGIFCICL 369 (530)
Q Consensus 294 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~---~~~~~~~~~ 369 (530)
.......+.+.|+.+..|++..+.+.+.. ...++.+++.+++|+++||+++|+ .+.++.. +..+.+..+
T Consensus 237 ~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-------~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 237 GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-------ALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 55555667888887778999999999874 556799999999999999999873 2222222 222222222
Q ss_pred hcC-CcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHH
Q 037413 370 GRA-STLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMG 446 (530)
Q Consensus 370 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 446 (530)
... ++.+......++..+..+...+..+++ .+..+++..++..|+.+...++|..+++.+.|. .+..++...+.+..
T Consensus 310 ~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~ 389 (491)
T PRK11010 310 SITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSV 389 (491)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 222 344333334444333344444444555 345667788999999999999998877777766 55566655555554
Q ss_pred HHHHHHH
Q 037413 447 IMIVCCT 453 (530)
Q Consensus 447 ~~~~~~~ 453 (530)
++.+.+.
T Consensus 390 ~~~l~~l 396 (491)
T PRK11010 390 AAAVPGL 396 (491)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=244.82 Aligned_cols=326 Identities=13% Similarity=0.072 Sum_probs=245.0
Q ss_pred ccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 79 TFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
....++.+|.+++++|+|.++.+++.+++.+++.++.++.|++.||+|||+++.++.++.+++.+.+ .+++++.+++.|
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3557789999999999999999999999999999999999999999999999999999988888877 778999999999
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
++.|++.+. .+....++.++++ ++|++++++.+...++|..+++.+++.+.+... .+||+.|.+.+++.++
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-------~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-------GHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHH
Confidence 999999996 6666778889886 589999999999989999888887777665431 1499999887765443
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 037413 238 MGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTA 317 (530)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (530)
..+ ...++.++++++ ++... ....++.+++|.+|...+..++....++....++|.|+++ .|.+..+.
T Consensus 167 ~~~---~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~ 234 (355)
T TIGR00896 167 ALL---AWIPQVRRRVAA----NQTTT----RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATA 234 (355)
T ss_pred HHH---HHhhhhccccCC----CCCCC----CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 322 222322221110 00001 1123456788888887777767667777778899999976 69999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccc
Q 037413 318 GVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATF 397 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (530)
+.+.+...++.++++++.|++.||+++|+ ....++..+..++.+.+....+.... ....+.|++.+..++...
T Consensus 235 g~~~~~~~~~~i~~~~~~g~l~dr~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~ 307 (355)
T TIGR00896 235 GSLLALMQLAQAASALLIPALARRVKDQR------GIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLAL 307 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccch------HHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHH
Confidence 99999999999999999999999996542 23334444444433333333322222 245667888877777766
Q ss_pred ccc-cccc-cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 398 GII-PFIS-RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 398 ~~~-~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+.. ...+ +++++...++.+...+++..++|.+.|.
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 308 TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 3433 4577889999999999999999999877
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=247.42 Aligned_cols=350 Identities=13% Similarity=0.094 Sum_probs=245.1
Q ss_pred HHhhhhccccccchHHHHHhcC--CChhhHHHHHHH-----HHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH
Q 037413 73 FTCFVSTFAAAPLVPIIRDNLN--LIKTDIGNAGIA-----SVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM 145 (530)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 145 (530)
++++++++.++...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4567777778877888777754 455666665433 333445789999999999999999999999999999999
Q ss_pred HhhhhHH--------HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc
Q 037413 146 VFVSSAR--------GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA 216 (530)
Q Consensus 146 ~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 216 (530)
+++++++ .+++.|+++|++.+. .+....++.|++++++|++..++.+.+..+|..+++.+++.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9998875 488999999999996 7888899999999999999999998888888888887766654422111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchh--HHHHHHHHHHHHHH
Q 037413 217 GATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYR--TWIFVLLYGMSLGI 294 (530)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 294 (530)
. ....+||+.|++.+++.++..+ .....+|.|+.+++ +++.++. ....++.+++++ ++...+..++....
T Consensus 163 ~-~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T TIGR00883 163 A-LLEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFEKA--QEKHKKK----RGPIRETLTKHRKPFLLGLGLVIATTTT 234 (394)
T ss_pred H-hhccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHHH--Hhccccc----cCCHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 0 1233899999988766554433 23333443322111 1111111 123344555554 66666666666666
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHH-HHHHHH--HH-Hhh
Q 037413 295 ELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQ-TLGGIF--CI-CLG 370 (530)
Q Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~-~~~~~~--~~-~~~ 370 (530)
......++|.|+++.+|.+..+.+.......+...++.++.|++.||++||+ ...... ...... .+ ...
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-------VLIIFTVLAALLAVPLLMALL 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 7777888999998888999999999998999999999999999999999874 222111 111111 11 122
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhh-hhhhHHHHhhhhhhhh-ccCCC
Q 037413 371 RASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTG-AGGNFGSGLTQLLFFT-SSRHS 437 (530)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~~~~-~~~~~ 437 (530)
..++.+......++.+++.+...+...+++ +.+|++.|+++.++.. ....+|..++|.+.|. .+..+
T Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 223455555666677777777777777775 4667788999999854 4455788899999877 44343
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=243.98 Aligned_cols=369 Identities=15% Similarity=0.144 Sum_probs=242.6
Q ss_pred HHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
++..++.+++.++......+.+|. +.+++|++..++|++.+++.+++.++++++|+++||+|||+++.++..+.+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 334445555555555555555555 5667999999999999999999999999999999999999999887766655443
Q ss_pred HHH---hhhh-----HHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 144 SMV---FVSS-----ARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 144 ~~~---~~~~-----~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
... .++. +...++++++.|.+... .+....+. +.. .+++++.+|......++|..+++.+++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 167 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-- 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--
Confidence 221 1111 11122233333333222 22222332 222 24567888888888899999999888877653
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHH
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGI 294 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (530)
+|+++|++.+++.++..++.++..++.++++..+ +++.+++++...+..++.+|+|.+|...+..++....
T Consensus 168 --------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~ 238 (420)
T PRK09528 168 --------NPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NALGANASAVSLKDALALLKLPKFWFLVLYVIGVACF 238 (420)
T ss_pred --------CchHhHHHHHHHHHHHHHHHhcccccccchhhhc-cchhcccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence 8999999998888777666665544433322111 1111111122235566788899887766655554444
Q ss_pred HHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc
Q 037413 295 ELTIDNVIAEYFFDRF---NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR 371 (530)
Q Consensus 295 ~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
+.....++|.|+.+.+ +.+..+.+.+.++..+..+++.++.|++.||+++|+ .+..+.++.++...++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-------ALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHh
Confidence 4555556777776543 566677888888888899999999999999999984 444445555555555555
Q ss_pred CCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhh-hhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 372 ASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGL-TGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
.++.+..+...++.+++.+........++ +..+++.+++..+. .++...+|.+++|.+.|. .+..++...+...+.+
T Consensus 312 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 312 ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 66777666666667766666555555554 46778888887766 567788999999999888 5556666666655555
Q ss_pred HHHHH
Q 037413 449 IVCCT 453 (530)
Q Consensus 449 ~~~~~ 453 (530)
.++..
T Consensus 392 ~~i~~ 396 (420)
T PRK09528 392 VLLFT 396 (420)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=238.27 Aligned_cols=372 Identities=17% Similarity=0.164 Sum_probs=256.8
Q ss_pred HHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
++.+...+++.+.....+.|.+|. +.+++|.++.+.|++.+++.+++.+++++.|+++||+|||+.++.+++..+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 344455566666666666667766 5667999999999999999999999999999999999999999988777665443
Q ss_pred HHH---hh-----hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 144 SMV---FV-----SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 144 ~~~---~~-----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
... +. +.+..+++.+++.|++.+. .+....+..+.. ++++..+|......++|.++++.+++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-- 159 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-- 159 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--
Confidence 321 11 2334456778888888885 566666666643 2345667777778889999999888776542
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHH
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGI 294 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (530)
+||++|++.+++.++..++.++..++.|++++.+ +..+.++++...++.++.+|||.++...+..++....
T Consensus 160 --------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 230 (396)
T TIGR00882 160 --------DPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-NALGANASAFSLKLALELFRQRKFWMFVLYVVGVACV 230 (396)
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-cccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 8999999999888877766666555544322111 1100111112235678889999988777766655555
Q ss_pred HHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc
Q 037413 295 ELTIDNVIAEYFFDRF---NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR 371 (530)
Q Consensus 295 ~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
+.....+.+.|+.+.+ +.+....+.+.++..+...++.+..+++.||+++|+ ...++..+.++...+...
T Consensus 231 ~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-------~l~~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 231 YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-------ALLIAGTIMSVRIIGSSF 303 (396)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHh
Confidence 5556667788877654 456667788888888888999999999999999984 444555555555555455
Q ss_pred CCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhh-hhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 372 ASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGL-TGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
.++.+..++..++.+++..........+.+ ..+++.++++.+. .+....+|++++|.+.|. .+..++...+...+++
T Consensus 304 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 304 ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 566666666666666665444333334433 4566677777766 567888999999999888 5556777777776666
Q ss_pred HHHHHHHH
Q 037413 449 IVCCTFPV 456 (530)
Q Consensus 449 ~~~~~~~~ 456 (530)
.++..+..
T Consensus 384 ~~i~~~~~ 391 (396)
T TIGR00882 384 VLLFTLIS 391 (396)
T ss_pred HHHHHHHH
Confidence 65555443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=218.37 Aligned_cols=363 Identities=14% Similarity=0.124 Sum_probs=283.7
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
+..+..+...+++-.+......+++|.+++.|+++..|.+++..+++.+|.+++++.|++.+|+|+|+.++.|+.+++++
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg 91 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG 91 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34566677777777777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh--
Q 037413 142 VFSMV---FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR-- 215 (530)
Q Consensus 142 ~~~~~---~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-- 215 (530)
+.++. ...+|..++++-++.|.|.+. .+++..++....++++..+.+++.+...++|..++|+++..+...-..
T Consensus 92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~ 171 (422)
T COG0738 92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT 171 (422)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence 99984 567899999999999999997 788899999999998889999999999999999999988887763000
Q ss_pred --------cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHH
Q 037413 216 --------AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLL 287 (530)
Q Consensus 216 --------~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (530)
.-......||++|.+.+...+++.+..... +.|+.+....+ ..+.++ ....+++++|+++...+.
T Consensus 172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~--k~p~~~~~~~~---~~~~~~--~~~~~l~~~~~~~~gvl~ 244 (422)
T COG0738 172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS--KLPDLQVAAPS---LGASGS--AGLSSLFQNKHLRLGVLA 244 (422)
T ss_pred cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc--cCCcCCccccc---cccccc--chHHHHHhChHHHHHHHH
Confidence 000011158999999988777666655443 22333211101 111111 156788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHH
Q 037413 288 YGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCI 367 (530)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~ 367 (530)
.+++.+......+|++.|+.+..|.+..+++...+....+.++|++++.++..|+...+ .+.....+..+.++
T Consensus 245 ~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-------~Laf~a~~~ill~~ 317 (422)
T COG0738 245 IFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-------YLAFYALIAILLLL 317 (422)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999988763 44444444444455
Q ss_pred HhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchh
Q 037413 368 CLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATG 441 (530)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 441 (530)
.....++.+ .+...++.|++.+..+|..++. ....+ ++...+ |......-+|+++.|++.|. .|..+....
T Consensus 318 ~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~g~~~~ 390 (422)
T COG0738 318 AVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIADMFGIQLT 390 (422)
T ss_pred HHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHHHHHhhhhHHH
Confidence 555555543 4556677899999999999998 45666 443333 44445667789999999888 455544333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-28 Score=236.40 Aligned_cols=338 Identities=14% Similarity=0.042 Sum_probs=249.3
Q ss_pred HHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCc----hhhHHHHHHHHHHHHHHHh
Q 037413 72 FFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPR----YGCAFLIMLSAPTVFSMVF 147 (530)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~ 147 (530)
++..+.......|.+|.+.+++|.|.+++|++.+++.++..++++++|++.||+||| +.+.++..+. .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 333334456677888999999999999999999999999999999999999999984 3333222222 2233444
Q ss_pred hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhH
Q 037413 148 VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRI 226 (530)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~ 226 (530)
++++|.+++.|++.|++.+. .+...++..++ +++|+++++......++|..+|+.+++.+.+.. |||.
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~---------g~~~ 159 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF---------GEQA 159 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---------ChhH
Confidence 68899999999999999885 67666777766 346888888888888999999999999988877 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 227 AFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYF 306 (530)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (530)
.|++.++..++..+ ..+..|+.+++. +++ ++.++..+.+++.+|+|.+|...+..++..........++|.|+
T Consensus 160 ~f~~~~~~~~~~~~-~~~~~~~~~~~~----~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 232 (382)
T PRK11128 160 ILWILTAGVASMLL-GQLLRPTIMPQG----ESR--QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW 232 (382)
T ss_pred HHHHHHHHHHHHHH-HHHccCCCCCcc----ccc--cccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99988765444433 333333321110 000 11111234578889999999888777776666666777888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 037413 307 FDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFS 386 (530)
Q Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (530)
.+ .|.+..+.+.+.+...+..++..++.+++.||+++|+ .+..+..+.++..+++...++.+..++..++.|
T Consensus 233 ~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 233 QA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-------LLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 65 8999999999988888899999999999999999873 455556666666556666677777777788888
Q ss_pred HHhhhhhccccccccccccccccchhhhhhhh-hhHHHHhhhhhhhh-ccCCC
Q 037413 387 ITTQAACGATFGIIPFISRRSLGVISGLTGAG-GNFGSGLTQLLFFT-SSRHS 437 (530)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~~~-~~~~~ 437 (530)
++.+...+....+..+.+++++++..++.+.. ..+|..++|.+.|. .+..+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 305 GTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88877777777776655677778888888744 45677899999888 44444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-28 Score=228.00 Aligned_cols=336 Identities=8% Similarity=0.019 Sum_probs=250.4
Q ss_pred ccccccchHHHHHhcCCChhh-HHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 037413 79 TFAAAPLVPIIRDNLNLIKTD-IGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAA 157 (530)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (530)
+...+...|.+.+++|+|++| .|.+.++++.+|++++++.|.++||+|.|+++.++.+.+++..++.++++++..+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHH--HHHH
Q 037413 158 RFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAP--GCLH 235 (530)
Q Consensus 158 r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~--~~~~ 235 (530)
|++.|++.|...+...++..|+|+++|+++.++..++..+|.++++++++++. .+ |||+-+.+. ...+
T Consensus 122 R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~---------gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 122 EVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL---------GWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc---------CchhHHHHHHHHHHH
Confidence 99999999973388899999999999999999999999999999988888733 22 787655333 2233
Q ss_pred HHHHHHHHHhccCCCCCC---cc---------cccc--CCC---CC---C-------CChhHHHHHhhhchhHHHHHHHH
Q 037413 236 VIMGILVLTLGQDLPDGN---LN---------TLQK--KGD---VP---T-------DKFPKVLWYAITNYRTWIFVLLY 288 (530)
Q Consensus 236 ~~~~~~~~~~~~~~p~~~---~~---------~~~~--~~~---~~---~-------~~~~~~~~~~~~~~~~~~~~~~~ 288 (530)
..+++++.+++|..+++. ++ +.+. +.+ .. + ..++..++...+||.+....+-.
T Consensus 192 ~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWw 271 (511)
T TIGR00806 192 MTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWW 271 (511)
T ss_pred HHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 444455555666433321 00 0000 000 00 0 01244556678888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHH
Q 037413 289 GMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCIC 368 (530)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~ 368 (530)
.+...+++.+.+|......+..+-++...|..-++..+.+.+..+..|++-.++.+ .....+.++.++.+..+++
T Consensus 272 a~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~-----~~~l~l~v~s~~~~gll~~ 346 (511)
T TIGR00806 272 VFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR-----WSKLLIAVVSAIQAGLVFW 346 (511)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh-----hHHHHHHHHHHHHHHHhhh
Confidence 77777777777666655554433222255666667777778888888887554422 2224555555666666778
Q ss_pred hhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 369 LGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
+...++.|+.++..+++...+....++...-+ .....+..|..+|+.+++..+-..+-..+
T Consensus 347 m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 347 MSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 88899999999999999988887777766554 46777788999999988887766555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=272.54 Aligned_cols=350 Identities=11% Similarity=0.018 Sum_probs=255.7
Q ss_pred hhhccccccchHHHHHhcCCChh--hHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH---hhhh
Q 037413 76 FVSTFAAAPLVPIIRDNLNLIKT--DIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV---FVSS 150 (530)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~ 150 (530)
+.+......+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. .+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (1146)
T PRK08633 23 FNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW 102 (1146)
T ss_pred HHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444555667677776544 478999999999999999999999999999999998877666555443 4578
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHH
Q 037413 151 ARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFF 229 (530)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (530)
++.++++|+++|++.+. .++..+++.|++|+++|++++++...+.++|.++|+++++++.......+..+..+|++.+.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~ 182 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAG 182 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHH
Confidence 99999999999999996 67888999999999999999999999999999999999888876521000001114555555
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037413 230 APGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDR 309 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (530)
+.++...++.++..+.+++.|+......++............++.++++|.++...+..++.+........++|.|+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1146)
T PRK08633 183 LVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV 262 (1146)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55544444444444555655543211100111111122345567788888888877777776666667778899999998
Q ss_pred cCCCHH-HHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 037413 310 FNLKLH-TAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSIT 388 (530)
Q Consensus 310 ~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 388 (530)
+|++.. ..+++.+...++.+++.++.+++.||+++++ .+.++.++.+++++++....+.+..++..+++|++
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG-------LVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc-------chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999998 9999999999999999999999999998764 33344444444444444445666667777888888
Q ss_pred hhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 389 TQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 389 ~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.+...+...+++ ...+++.+|+++|+.+++.++|.++++.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 887777777775 46678899999999999999988877777655
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-28 Score=239.41 Aligned_cols=371 Identities=13% Similarity=0.083 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTV 142 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 142 (530)
+.+..+|++.++..+.........+.+..++.-|+..++++..+..+...+.++++|.++||++||++++.+.++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 44555666777777776666666777777778899999999999999999999999999999999999999988877665
Q ss_pred HHHHhh-----hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc
Q 037413 143 FSMVFV-----SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA 216 (530)
Q Consensus 143 ~~~~~~-----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 216 (530)
++.++. .+.|.+++.-++.|++.+. .|+-.+++.+..|+++...++++.+...++...+||.+++.+....
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~--- 166 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF--- 166 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---
Confidence 554432 4788999999999999996 7888899999999999999999999999999999999999999887
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 037413 217 GATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIEL 296 (530)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (530)
|-.++|.+.++..++..+..... +..++. + +..++...++.++.++.+.++|.+....+..++......
T Consensus 167 ------G~~~~f~inalsfl~~i~~l~~~-~~~~~~--~--~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~ 235 (524)
T PF05977_consen 167 ------GAAAAFLINALSFLISILALLRW-KPPPPP--S--SLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFAS 235 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHc-cccccc--c--ccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence 88889998877655544333333 321111 1 111112234456677777778877666555555444444
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
.+...+|.+..+.+|.++...|++.+..+++.++|.++.+++.+|+++++ ++..+.++.++.++.+...++.+
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~-------lv~~~~~~~a~~~~~lal~~~~~ 308 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR-------LVLLASLLFALALLLLALSPSFW 308 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch-------hhHHHHHHHHHHHHHHhcchHHH
Confidence 55667899998999999999999999999999999999999888887763 55566666777777778888888
Q ss_pred HHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHH
Q 037413 377 LSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 454 (530)
...+.+++.|++.........+.++ ..|++.+|++++++++....+..+|..++|. .+..+....+...++..+++.+
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 8888888889888877777777755 7788899999999999999889999999888 5566666666555444443333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=267.59 Aligned_cols=346 Identities=11% Similarity=0.000 Sum_probs=248.1
Q ss_pred HHHHHHhhhhccccccch-HHHHHhcCCCh-hhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHH---HHHHHHHHHH
Q 037413 69 WLSFFTCFVSTFAAAPLV-PIIRDNLNLIK-TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAF---LIMLSAPTVF 143 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~ 143 (530)
++..+.+.+....+..+. ..+..+.+.+. ...++..+++.++++++++++|+++||+|||+++.. ..++.++..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333332 23444444433 447888999999999999999999999999997533 2223333333
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 144 SMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
.....+++++++++|+++|++.+. .++..+++.+++++++|++++|+.+++.++|.++|+.+++++....
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~--------- 171 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG--------- 171 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 333458999999999999999996 7888999999999999999999999999999999999999988765
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037413 223 AWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVI 302 (530)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (530)
+|++.|++.+++.++ +++..+.+++.++.... .+. .....++....++.+.++|.+|...+..++.+.....+..++
T Consensus 172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1140)
T PRK06814 172 NFVILVALLMGIAVL-GWLASLFIPKTGNAAPD-LKI-DRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL 248 (1140)
T ss_pred ccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCC-Cee-ccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999544444444 34444444543322110 000 000111234567788899999998888887777777788899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc-----------
Q 037413 303 AEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR----------- 371 (530)
Q Consensus 303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 371 (530)
|.|+.+.+|.+....+++.+...++.++|.++.|++.++..+++ .+..+.++.++..+.+..
T Consensus 249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL-------YVPIGALLMGLFGLDLAFASSSVPAEPAQ 321 (1140)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee-------eehHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999998776553 111111122111111111
Q ss_pred ---------CCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhc
Q 037413 372 ---------ASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTS 433 (530)
Q Consensus 372 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~ 433 (530)
..+.+..++..+++|++.+...+...+++ ...+++.+|+++|+.+++.+++..+++.+.+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 14556666777788888888777777775 477888999999999999999999999987774
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=231.69 Aligned_cols=324 Identities=13% Similarity=0.123 Sum_probs=234.8
Q ss_pred ccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-----CCchh-hHHHHHHHHHHHHHHHhh---hhH
Q 037413 81 AAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-----GPRYG-CAFLIMLSAPTVFSMVFV---SSA 151 (530)
Q Consensus 81 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~ 151 (530)
..++..|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .++
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 45678899999999999999999655 555555 99999999998 88886 567787888877777776 466
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHH
Q 037413 152 RGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFA 230 (530)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (530)
+.+....++.+++.+. .++..+++.|++|+++|+++.++...+.++|.++++.+++.+......+. ...++||.+|++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~-~~~~~wr~~f~i 162 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT-GLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccccHHHHHH
Confidence 6777778888877776 57778999999999999999999999999999999888877766652111 112249999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 231 PGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYR---TWIFVLLYGMSLGIELTIDNVIAEYFF 307 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (530)
.+++.++..+..++..||+++.++ ++++++++.++.++..+++|. ++...+..++....+.....++|.|+.
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQEDAS-----VPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLL 237 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCcccc-----cchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877766555555555322110 001111123445667777775 666666666666667777888999998
Q ss_pred HhcCCCHHHHHHHHHHHH-HHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc----C-------CcH
Q 037413 308 DRFNLKLHTAGVIAATFG-MANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR----A-------STL 375 (530)
Q Consensus 308 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~ 375 (530)
+ .|++..+.+.+....+ +..+++.++++++.||+++|+ .+..+.++.++...++.. . ++.
T Consensus 238 ~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 238 D-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-------ALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred H-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 7 8999999998877665 577899999999999999874 333333333333322211 1 234
Q ss_pred HHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhh
Q 037413 376 PLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGN 420 (530)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~ 420 (530)
+......++.+++.+...+...++. +..|++++|+..|+.+...+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 5555666677888888888888885 57788999999999887654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=209.13 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=271.6
Q ss_pred cccCCcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHH
Q 037413 55 FSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFL 134 (530)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 134 (530)
....+.+|.........++...+.....+.+.|.+.+..|.+..|..++......+..+++..+|.++|++|||+...+.
T Consensus 70 igfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T 149 (528)
T KOG0253|consen 70 IGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT 149 (528)
T ss_pred cCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence 33456677778888888888877777788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 135 IMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
.+..++..++.+.++|+..+++.|.+.|+|.|+.|...++-.|..|..+|...+-.. ..+.+|.+....+.-.+...+
T Consensus 150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~- 227 (528)
T KOG0253|consen 150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF- 227 (528)
T ss_pred HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999888888899999998888776666 788899988887766666665
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC------cc---------------------------ccccCC
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN------LN---------------------------TLQKKG 261 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~------~~---------------------------~~~~~~ 261 (530)
||||.....+.+..+.+.+ .+.++|.|+-. .+ +.+++.
T Consensus 228 --------gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~ 298 (528)
T KOG0253|consen 228 --------GWRYLLFTSSTPLMFAARF-LVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEE 298 (528)
T ss_pred --------hHHHHHHHHHhHHHHHHHH-HhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhh
Confidence 9999998888665555444 44556665421 00 000000
Q ss_pred -----------CCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------
Q 037413 262 -----------DVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRF--N----------------- 311 (530)
Q Consensus 262 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g----------------- 311 (530)
++...+....+...++...+ ......+...+.+++........++... +
T Consensus 299 ~~~~~~~~~a~ke~rg~~~nLlsp~lrkttl-llw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~ 377 (528)
T KOG0253|consen 299 SDLDDSKSSAAKEVRGGTTNLLSPKLRKTTL-LLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCP 377 (528)
T ss_pred hchhhhhhccccccccchHhhcChHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCC
Confidence 00000111111222332222 2222222333333333222222222110 0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhh
Q 037413 312 LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQA 391 (530)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (530)
.+...--.=..+..+..+.|.++.+++.||+|||+ .++.++++.+++.+++....+........+..-++..+
T Consensus 378 ~s~~~dYrdllitslaefPGlLIt~~iverlGRKk-------TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg 450 (528)
T KOG0253|consen 378 LSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK-------TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG 450 (528)
T ss_pred ccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc
Confidence 11111111233566788999999999999999995 77788888888777776666555556666777788889
Q ss_pred hhcccccccccc-ccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHh
Q 037413 392 ACGATFGIIPFI-SRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALV 459 (530)
Q Consensus 392 ~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (530)
.+...|.+.+++ |...|+++.|.+...+.+|+++.|.+.-. ...+...+..+.+.+++++.++.+++
T Consensus 451 ~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~-~e~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 451 AFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMR-AELSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred hheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHH-hccceeehHHHHHHHHHHHHHHheee
Confidence 999999997765 55689999999999999999999999732 33344455556666666666554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=224.70 Aligned_cols=358 Identities=11% Similarity=0.025 Sum_probs=237.3
Q ss_pred HHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-----CCch-hhHHHHHHHHHHH
Q 037413 69 WLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-----GPRY-GCAFLIMLSAPTV 142 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~ 142 (530)
...++............+|.+-++.|+|.+++|++..+... .+..+++|+++||+ |||| ++.++.++.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34455555555566677888888899999999999776665 58999999999999 8765 7888888888888
Q ss_pred HHHHhh---hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 143 FSMVFV---SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 143 ~~~~~~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
.+.++. ++++.+++..++.++..+. .++..+++.|++|+++|+++.++...+.++|..+++.++..+.+.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------ 156 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------ 156 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc------
Confidence 887776 4578888888888877776 677789999999999999999999988888888887766666542
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTI 298 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..|||..|++.+++.++..+. .+..||+++.+ + ++++.+++..+.+++++++|.++.+.+..++........
T Consensus 157 --~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~-~----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~ 228 (402)
T PRK11902 157 --VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPA-R----PPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA 228 (402)
T ss_pred --ccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccc-c----ccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence 128999999998887665544 34445432211 1 001111224566788899999887776665554433333
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH---HHHHHHHhhcC-C
Q 037413 299 DNVIAEYFFDRFNLKLHTAGVIAATFG-MANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL---GGIFCICLGRA-S 373 (530)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~ 373 (530)
..+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++|+ ....+..+ ..+.+..+... +
T Consensus 229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-------~l~~~~~~~~l~~l~~~~~~~~~~ 301 (402)
T PRK11902 229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-------SLMLFGVLQAVSNLGYWVLAVTPK 301 (402)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556677778999999999876554 468899999999999999873 22222222 22222222332 3
Q ss_pred cHHHHHHHHHH----HHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 374 TLPLSILSMIL----FSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 374 ~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
+.+......++ .+++.+...+....++++.. .++..++.+....++..+++.+.|. .+..++...+...+.+
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~ 378 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSF---SATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVI 378 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 44544444333 33444444444455544222 2334455565666666655556555 5566665555544444
Q ss_pred HHHH
Q 037413 449 IVCC 452 (530)
Q Consensus 449 ~~~~ 452 (530)
.+++
T Consensus 379 ~~~~ 382 (402)
T PRK11902 379 ALPG 382 (402)
T ss_pred HHHH
Confidence 4333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=202.21 Aligned_cols=326 Identities=15% Similarity=0.106 Sum_probs=261.7
Q ss_pred ccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 79 TFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
...++|+++.+++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.++|.++-... +.+.++.+-
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt 106 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGT 106 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 6678899999999999999999999999999999999999999999999999999999999999999887 788899999
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
.+.|.|.+. ....+.++.+.||+ +-+..+|+|....++|..+++.+...+.+.. + +||....+.+.++++
T Consensus 107 ~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~---~-----gW~~aL~~WAl~all 177 (395)
T COG2807 107 LLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHS---G-----GWRGALGFWALLALL 177 (395)
T ss_pred HHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh---c-----cHHHHHHHHHHHHHH
Confidence 999999995 78888999999986 6899999999999999999998877777654 1 799999999999888
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 037413 238 MGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTA 317 (530)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (530)
..+.++.-. ..+. ....+.+ ...-..++|||..|.+.+.+.++...++....|+|.++.| .|+|..++
T Consensus 178 Al~~WlPq~-~r~~-----~~~~~~~-----~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~a 245 (395)
T COG2807 178 ALLIWLPQA-LREQ-----AASIATK-----LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEA 245 (395)
T ss_pred HHHHHhhhc-cccc-----ccccccc-----cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHh
Confidence 776655432 1110 0100010 0112346799999999999999999999999999999988 69999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHHHhhhhhccc
Q 037413 318 GVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST-LPLSILSMILFSITTQAACGAT 396 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~ 396 (530)
|.+.++..+.++...+....+.+|...++ ........+..++++.+.+.+. ..... .+++|++.+..++..
T Consensus 246 G~llsl~~l~~~~~~ll~P~la~R~~n~r------~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~la 317 (395)
T COG2807 246 GSLLSLMQLAQLPTALLIPLLARRSKNQR------PLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLA 317 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHH
Confidence 99999999999999999999999865543 2222222222222222222222 22222 578899999999988
Q ss_pred ccccc--ccccccccchhhhhhhhhhHHHHhhhhhhhhcc
Q 037413 397 FGIIP--FISRRSLGVISGLTGAGGNFGSGLTQLLFFTSS 434 (530)
Q Consensus 397 ~~~~~--~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~ 434 (530)
..++. .-.++..+.-+|+.+.++++-+.+||+++|...
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh 357 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH 357 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence 88754 445677888999999999999999999999843
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=227.99 Aligned_cols=356 Identities=12% Similarity=0.027 Sum_probs=237.6
Q ss_pred HHHHHHhhhhcccc-ccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCC-chhhHHHHHHHHHHHHHHH
Q 037413 69 WLSFFTCFVSTFAA-APLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGP-RYGCAFLIMLSAPTVFSMV 146 (530)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~ 146 (530)
.+.++..+..+..+ +++.+.+.+++|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 566667888999999999999999999999999999999999965 7788888888888888888
Q ss_pred hhhhHHHHHHHHHHHHhhhhh-hhhHHHHH----h----hhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcC
Q 037413 147 FVSSARGYIAARFMIGFSLAT-FVSCQYWM----S----TMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAG 217 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 217 (530)
+.++++.+++.|++.|++.+. .+...++. . |......|.+.+| .+|.++++++++.+...
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~----- 156 (418)
T TIGR00889 88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE----- 156 (418)
T ss_pred HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-----
Confidence 999999999999999998774 44443332 2 2222223444444 46777777766655211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 037413 218 ATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELT 297 (530)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
..|+ +|++.+++.++..++ .+..||.|+.+++ ++ ...++......+..+|+|+++.+.+..++.......
T Consensus 157 ----~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~---~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 226 (418)
T TIGR00889 157 ----LSNI-QLYITAGSSALLGVF-ALTLPDIPVAKST---AK-MSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQI 226 (418)
T ss_pred ----chhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccc---cc-cCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHH
Confidence 0354 466666666655544 4455665432111 00 000111112345678999988877777666555555
Q ss_pred HHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHh
Q 037413 298 IDNVIAEYFFDRFNLK--------LHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICL 369 (530)
Q Consensus 298 ~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 369 (530)
...+++.|+.+ .|.+ ....+...++..+..+++.++.+++.||+++|+ .+.++.++.++.+.++
T Consensus 227 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-------~l~~~~~~~~v~~~l~ 298 (418)
T TIGR00889 227 TNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-------VMLLSLVAWALRFGFF 298 (418)
T ss_pred HHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHH
Confidence 56677877765 4544 356688888889999999999999999999984 5555555555554444
Q ss_pred hcC-Cc---HHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhh-hhhhHHHHhhhhhhhh-ccCC------
Q 037413 370 GRA-ST---LPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTG-AGGNFGSGLTQLLFFT-SSRH------ 436 (530)
Q Consensus 370 ~~~-~~---~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~~~~-~~~~------ 436 (530)
... .+ .+..++..++.+++.+...+....++ +..|++.|+++.|+.+ ....+|.+++|.+.|. .+..
T Consensus 299 ~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~ 378 (418)
T TIGR00889 299 AYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTF 378 (418)
T ss_pred HHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCC
Confidence 332 21 23445566677777776666666664 4678889999999997 5677899999999887 3332
Q ss_pred CcchhHHHHHHHHHHHH
Q 037413 437 STATGISLMGIMIVCCT 453 (530)
Q Consensus 437 ~~~~~~~~~~~~~~~~~ 453 (530)
+++..+...+++.+++.
T Consensus 379 ~~~~~f~~~~~~~~i~~ 395 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILA 395 (418)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444554444444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-26 Score=227.37 Aligned_cols=359 Identities=10% Similarity=-0.055 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHH-HHh--cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh-hCCchhhHHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPII-RDN--LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL-LGPRYGCAFLIMLS 138 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 138 (530)
+.+..+++..+...+..+...+.+|.+ .++ +|++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 345555566666666666666666665 555 89999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCc---chhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKI---IGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
+++.++.+++++++.++++|++.|+|.|. .+...+++++++|+++ |+.+++++....++|..+|+.+++.+.+..
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~- 168 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY- 168 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999996 6788899999998754 888999999999999999999998887765
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcc-CCCCCCccccccCCCCCCCChhH-----------------------
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQ-DLPDGNLNTLQKKGDVPTDKFPK----------------------- 270 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~----------------------- 270 (530)
|||+.|++.++..++.. +.+++.+ ..++.++++.+.+ +++++....
T Consensus 169 --------g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (475)
T TIGR00924 169 --------GYHVGFNLAAVGMVIGL-LTFFAGRHMLRDIGSVPDPLS-GQGKTYGKLLLALLAALALVFFCAWLMHHVVI 238 (475)
T ss_pred --------ChHHHHHHHHHHHHHHH-HHHHHcccccccCCCCCCCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 99999999886555443 3333333 2111110000000 000000000
Q ss_pred -----------------------HHHHh--hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHH
Q 037413 271 -----------------------VLWYA--ITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLH----TAGVIA 321 (530)
Q Consensus 271 -----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~ 321 (530)
..... .|...+..+.+...+.+..+....+.++.+..+..+.+.. ..+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~ 318 (475)
T TIGR00924 239 ANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQ 318 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHH
Confidence 00000 1111233333444444555555566677776664443322 256777
Q ss_pred HHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHHHHHHhhhh
Q 037413 322 ATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR---------ASTLPLSILSMILFSITTQAA 392 (530)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~ 392 (530)
++..+..++..++..++..|+.||........-+.+++++.++++..+.. ..+.+..+...++.+++....
T Consensus 319 ~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~ 398 (475)
T TIGR00924 319 SLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMI 398 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665556665421111112234555555555544431 347788888999999999999
Q ss_pred hcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 393 CGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 393 ~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.|..++++. ..|++.||+..|+......+|..+++.+...
T Consensus 399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~ 439 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF 439 (475)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999965 6677899999999999999999999888655
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=243.76 Aligned_cols=280 Identities=13% Similarity=0.161 Sum_probs=225.3
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM 145 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 145 (530)
+..++.++...+.....+..++.++++|+++.++.|++.+.+.++++++.++.|++.||+|||+++.+++++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 34455667777777788889999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhh---------------------------------------------------hHHHHHHHHHHHHhhhhh-hhhHHH
Q 037413 146 VFVS---------------------------------------------------SARGYIAARFMIGFSLAT-FVSCQY 173 (530)
Q Consensus 146 ~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (530)
++.+ .+..++++|+++|+|.+. ++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8763 256788999999999996 888899
Q ss_pred HHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC--------C----CCC-chhHHHHHHHHHHHHHHH
Q 037413 174 WMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA--------T----PFT-AWRIAFFAPGCLHVIMGI 240 (530)
Q Consensus 174 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~--------~----~~~-~wr~~f~~~~~~~~~~~~ 240 (530)
++.|++|+++|+++++++.....+|.++|+++++.+.......+. . .+. +|+..|++.+++.++.++
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888887765421100 0 001 378889999988888777
Q ss_pred HHHHhccCCCCCCcc-ccc---cCC----CC-C-------CCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 241 LVLTLGQDLPDGNLN-TLQ---KKG----DV-P-------TDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAE 304 (530)
Q Consensus 241 ~~~~~~~~~p~~~~~-~~~---~~~----~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (530)
+.+++.++.|+...+ +.+ ++. .. . .++..+.++.+++||.++...+..++.....+.+.+|+|.
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~ 355 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK 355 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555554543211 100 000 00 0 0112345678899999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHHhhhhhhhHhhhhccCC
Q 037413 305 YFFDRFNLKLHTAGVIAATFGM-ANIFARPLGGLMSDMAARP 345 (530)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r 345 (530)
|+++.+|+++.+++++..+..+ +.+++.+++|+++||++.+
T Consensus 356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 9999999999999998887665 5688999999999999865
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=228.37 Aligned_cols=334 Identities=12% Similarity=0.042 Sum_probs=244.1
Q ss_pred cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh----hCC-chhhHHHHHHHHHHHHHHHhhhh------HH
Q 037413 84 PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL----LGP-RYGCAFLIMLSAPTVFSMVFVSS------AR 152 (530)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~ 152 (530)
.+.+.+.+++|+++.++|++.++..+..++..++.|+++|| +|| |+.++++....+++.+++.+.++ ++
T Consensus 21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 35566788999999999999999999999999999999998 676 45677888888888888776653 45
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHhhhc-cCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHH
Q 037413 153 GYIAARFMIGFSLAT-FVSCQYWMSTMF-NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFA 230 (530)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (530)
.+++.+++.+++.+. ..+..++..|.. ++++|++..++.+.+..+|..+++.+.+.+...+.. ..+..+||+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~--~~~~~g~~~~~~i 178 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG--GDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcccccHHHHHHH
Confidence 677788888888886 456667888887 468899999999888888888777665555543311 1123489999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037413 231 PGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRF 310 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (530)
.++++++..++.++..+|.+++.+ ++++++.+..+.++.+++||.++...+..++..........+.+.|.+...
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSEIP-----KNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL 253 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCCCC-----cccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeec
Confidence 999988887777777666543211 111123345677888899999988887777766666655555555554444
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHh
Q 037413 311 NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA-STLPLSILSMILFSITT 389 (530)
Q Consensus 311 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 389 (530)
+ +....+.+..+..++.+++.++.+++.||+++|+ ....+..+..+..+.+... ++.+...+..++.+++.
T Consensus 254 ~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 325 (437)
T TIGR00792 254 G-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-------LFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQ 325 (437)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 5 4556677777778999999999999999999874 4444444444444333332 34455556667777888
Q ss_pred hhhhcccccccccc--------ccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 390 QAACGATFGIIPFI--------SRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 390 ~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+...+..+++..+. +++.+|.++|+.++...+|..+++.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 326 NFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777764432 24568999999999999999999998776
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=214.52 Aligned_cols=347 Identities=12% Similarity=0.050 Sum_probs=267.0
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-h
Q 037413 90 RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-F 168 (530)
Q Consensus 90 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~ 168 (530)
.++++-+++++|++++.+.+.+.+..++.|.+.||+|+|..+++|++++..+++++++.++|+.++++|.+||+|.++ .
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 344566788999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred hhHHHHHhhhccCC-cchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcc
Q 037413 169 VSCQYWMSTMFNGK-IIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQ 247 (530)
Q Consensus 169 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 247 (530)
+...+++++.||++ +|++++|+...+.++|..+||.+++++++.. |.+.+|++.+++.++-..+.++.++
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---------Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---------GKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---------CCcCcHHHHHHHHHHHHHHHHheeC
Confidence 88899999999965 5799999999999999999999999999988 9999999999999999988888765
Q ss_pred CCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 037413 248 DLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMA 327 (530)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 327 (530)
.....++ ..++ ...+++++++|.++...................++.+..+.+..+.-+.|+.+....+.
T Consensus 249 p~~~~~~------~~~~----~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~ 318 (464)
T KOG3764|consen 249 PTEMDPD------STEQ----GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS 318 (464)
T ss_pred ccccCcc------cccc----CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence 4322210 0111 13467788999998887776665555555556677777787775555888888888999
Q ss_pred HHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccc----ccccccc
Q 037413 328 NIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGAT----FGIIPFI 403 (530)
Q Consensus 328 ~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~ 403 (530)
..++..+.|.+.||++..+ ....+.+++..+..+....+.++...+++..+..+++.+...... .-+++..
T Consensus 319 y~ig~~lfg~la~k~~~~~-----wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~r 393 (464)
T KOG3764|consen 319 YAIGTNLFGKLADKYPHLR-----WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPR 393 (464)
T ss_pred hhccCchHHHHHHhcCchh-----HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchh
Confidence 9999999999999999531 134455555566555556666666555555555555444433332 2223332
Q ss_pred ccc---cccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHHHHHHhh
Q 037413 404 SRR---SLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 404 ~~~---~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
..+ ..|..+++......+|.++||.+.|. .+..+..+.....++.-++..-+..+++
T Consensus 394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 67899999999999999999999887 5566666555555555555444443333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=221.02 Aligned_cols=349 Identities=16% Similarity=0.161 Sum_probs=242.8
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF 147 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 147 (530)
.++.+...++.....+..++.+..|+|- ..+..|+.+...++.+++.++.|+++|.||||++++.+.++..+|.+.++.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3444444455566666778899999995 477899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHH
Q 037413 148 VSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIA 227 (530)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (530)
++|...++++..+.|+|.|........++|..|.|.|....++... ..++...+++.+.+.+. .+.+|||.
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~----~~i~~~~~~~~ia~~~~-----~~~~WRw~ 198 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASI----PFIITTWISPLIAQLFA-----AHSGWRWI 198 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHH----HHHhhhcccHHHHHHhc-----cCCCcchH
Confidence 9999999999999999988655566678999999999877665533 33333345555555542 23399999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCC--ccccc-cCC---------------------------C--CCCCC--------
Q 037413 228 FFAPGCLHVIMGILVLTLGQDLPDGN--LNTLQ-KKG---------------------------D--VPTDK-------- 267 (530)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~-~~~---------------------------~--~~~~~-------- 267 (530)
|++.+++..+.+++.+++.+.++... .++.. ++. . .+-++
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 99999988777766665554322111 00000 000 0 00000
Q ss_pred ----------hhH---------HHHHhhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHH
Q 037413 268 ----------FPK---------VLWYAITNYR-TWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLH---TAGVIAATF 324 (530)
Q Consensus 268 ----------~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 324 (530)
.++ ...+++++++ +...++..++....++....+.|......++.++. ..++.....
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~ 358 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPV 358 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhH
Confidence 000 1134577644 44444555555566777777888888777777653 567777788
Q ss_pred HHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH--HHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-
Q 037413 325 GMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI--FCICLGRASTLPLSILSMILFSITTQAACGATFGIIP- 401 (530)
Q Consensus 325 ~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 401 (530)
+++..+|.++.|.+..+++|-| +.++++..+..+ +++.....++....+...++.+++.+....+....++
T Consensus 359 ~fg~~~g~~i~g~l~~~ir~~K------w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql 432 (599)
T PF06609_consen 359 GFGSCAGAVILGLLFSKIRHIK------WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQL 432 (599)
T ss_pred HHHHHHHHHHHHHHHHHccchh------HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEe
Confidence 8888899999999998887543 333344433333 2232233334444556677778888777666666655
Q ss_pred ccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 402 FISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 402 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
..|++..|++.|+..+++.+|+.++..++..
T Consensus 433 ~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 433 IVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred eeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6678899999999999999999888877643
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=222.70 Aligned_cols=362 Identities=11% Similarity=-0.005 Sum_probs=242.3
Q ss_pred chHHHHHHHHHHHHhhhhccccc-cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh-hCCchhhHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAA-PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL-LGPRYGCAFLIMLS 138 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 138 (530)
+++.+..+++..+...+..+.+. .+...+++++|++.++.+++.+.+.....+..+++|+++|| +|||+++.++.+++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 45556666666666666655544 44556788999999999999999998888889999999999 99999999999999
Q ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHhhhhh-hhhHHHHHhhhccCC--cchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 139 APTVFSMVFVSSARG-YIAARFMIGFSLAT-FVSCQYWMSTMFNGK--IIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
+++.++++++.+... ++++|+++|+|.|. .+...+++.|++|++ +|+++++++..+.++|..+|+.++|++.+..
T Consensus 92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~- 170 (489)
T PRK10207 92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF- 170 (489)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 999999999876444 55899999999996 678889999999877 4577899999999999999999999998876
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCC----------------------CCCChhH--
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDV----------------------PTDKFPK-- 270 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------------------~~~~~~~-- 270 (530)
|||+.|++.++ +++..++.+.+.++..++...+.++++.+ .......
T Consensus 171 --------gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (489)
T PRK10207 171 --------GYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLV 241 (489)
T ss_pred --------ChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999654 44444444444443222110000000000 0000000
Q ss_pred ---------------HH--HHhhhchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHH
Q 037413 271 ---------------VL--WYAITNYRTWIFVLL--YGMSLGIELTIDNVIAEYFFDRFNLKL----HTAGVIAATFGMA 327 (530)
Q Consensus 271 ---------------~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~ 327 (530)
.. .+.+|+|.+..+.+. ..+.+..+......++.|.++..+.+. .....+.++..+.
T Consensus 242 ~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ 321 (489)
T PRK10207 242 LIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFW 321 (489)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHH
Confidence 00 123344443332222 223334444444566766664332211 0123344445556
Q ss_pred HHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHH-------hhc---CCcHHHHHHHHHHHHHHhhhhhcccc
Q 037413 328 NIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCIC-------LGR---ASTLPLSILSMILFSITTQAACGATF 397 (530)
Q Consensus 328 ~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (530)
.++..++.+++.||+++|+.......-+.+++++.+++++. ... ..+.+..+...++.+++.....+...
T Consensus 322 iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~ 401 (489)
T PRK10207 322 VVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGL 401 (489)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 66777888999999998852112222233444444333321 111 12466677788889999999999988
Q ss_pred ccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 398 GII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 398 ~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+++ ...|++.+|.++|+.+...++|+.++..+...
T Consensus 402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~ 437 (489)
T PRK10207 402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF 437 (489)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 885 58888999999999999999999988877543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=199.52 Aligned_cols=358 Identities=16% Similarity=0.165 Sum_probs=256.1
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh-hCCchhhHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL-LGPRYGCAFLIMLSA 139 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~ 139 (530)
+...+...|+..+-.++.....+.+..+++.|.+++.++..++.+.|.+..++.+++.|++.|| +|-|+.-++-+....
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 3344555566666666667777777788899999999999999999999999999999999998 688887777777777
Q ss_pred HHHHHHH---hhhhHHHHHHHHHHHHhhhhhhh-hHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 140 PTVFSMV---FVSSARGYIAARFMIGFSLATFV-SCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 140 ~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
+|.++++ ..+.+|+++++|++.|+|.-... +-..+...||..||.+.++|+..+...+|..+-..+.+++++....
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 8887765 46899999999999999988754 4559999999999999999999999999999999999999988753
Q ss_pred cC-CCCCCchhHHHHHHHHHHHHHHHH---HHHhccCCCCCCccccccC-CCCCCCChhHHHHHhhhchhHHHHHHHHHH
Q 037413 216 AG-ATPFTAWRIAFFAPGCLHVIMGIL---VLTLGQDLPDGNLNTLQKK-GDVPTDKFPKVLWYAITNYRTWIFVLLYGM 290 (530)
Q Consensus 216 ~~-~~~~~~wr~~f~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (530)
.- -.++. --......+...+...+. ..-+..+..|+ ..+.+ +...++....+ ..- -.|.+|.+.+..++
T Consensus 202 ~~~~~ghT-~LG~~l~~~~~tc~~slical~lg~~D~rAer---ilh~e~g~~Ge~pkLtd-v~~-f~ppfw~~~iicv~ 275 (459)
T KOG4686|consen 202 MFPGVGHT-LLGLWLCFEVKTCKQSLICALSLGLSDDRAER---ILHLEEGFLGEEPKLTD-VNT-FYPPFWVLVIICVL 275 (459)
T ss_pred hcccchHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHhhhcCcccCCccccc-ccc-cCccHHHHHHHHHH
Confidence 21 00110 001111111122211111 11122221111 11111 11111110011 111 23788999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 037413 291 SLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG 370 (530)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (530)
.+...+-+.+.-|.++++++|+|+..++.+.+.....+.+..++.|.++||+|++. ++...+.+....+-..+.
T Consensus 276 yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~------~wv~~a~~~tl~~H~~l~ 349 (459)
T KOG4686|consen 276 YYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL------WWVASACILTLLGHSGLF 349 (459)
T ss_pred HHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee------hhHHHHHHHHHHHhhhHH
Confidence 88888888888999999999999999999999888889999999999999999973 222222222222222222
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 371 RASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+ +.+..+..+.+.|+.+.......|..++ .+|.++.|+++|.++.+.++|-++.|++.|.
T Consensus 350 F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 350 F--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred h--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 2 2334556778888888777777888865 6777899999999999999999999999887
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=209.34 Aligned_cols=327 Identities=13% Similarity=0.055 Sum_probs=223.7
Q ss_pred HHhcC--CChhh----HHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 037413 90 RDNLN--LIKTD----IGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV---SSARGYIAARFM 160 (530)
Q Consensus 90 ~~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l 160 (530)
.+.+| .++++ .+.+.+++.+|.++|++..|.++||+|||..+.++.++..++.++..++ +++.+++++|++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i 125 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI 125 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556 44443 4667899999999999999999999999999999998888888777654 789999999999
Q ss_pred HHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMG 239 (530)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (530)
.|+..|. ......++.|..|++.||..-.+.+.+..+|.+++..++- -..++ ....|++.+.+..+++++..
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilG-----t~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLG-----TEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcC-----CCcchHHHHHHHHHHHHHHH
Confidence 9999996 7788899999999999999999998888888877754321 12221 23379999999988887776
Q ss_pred HHHHHhccCCCCCC----cc--cc---------ccC-------------CCCCCCChhHHHHHhhhchhHHHH----HHH
Q 037413 240 ILVLTLGQDLPDGN----LN--TL---------QKK-------------GDVPTDKFPKVLWYAITNYRTWIF----VLL 287 (530)
Q Consensus 240 ~~~~~~~~~~p~~~----~~--~~---------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 287 (530)
++..+ .||+|+.- .+ +. +++ .++..++....+++++++|..... +..
T Consensus 199 ~~l~~-~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v 277 (485)
T KOG0569|consen 199 ALLPF-LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVV 277 (485)
T ss_pred HHHhc-CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHH
Confidence 65554 57766421 00 00 000 000011122345677776654332 222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHH
Q 037413 288 YGMSLG-IELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFC 366 (530)
Q Consensus 288 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~ 366 (530)
.+.... .......|...++ ...|++..++.+.....++...+..+++.++.||+|||. +++.+..+..+..
T Consensus 278 ~~~qq~sGi~ai~~Yst~i~-~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp-------Lll~~~~~~~~~~ 349 (485)
T KOG0569|consen 278 SFAQQFSGINAIFFYSTSIF-KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP-------LLLISLSLMAVAL 349 (485)
T ss_pred HHHHHhcCcceeHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHH
Confidence 222222 2333343444444 457999999999999999999999999999999999994 4444444444433
Q ss_pred HHhhcC----C-c-HH---HHHHHHHHHHHHhhhhh-ccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 367 ICLGRA----S-T-LP---LSILSMILFSITTQAAC-GATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 367 ~~~~~~----~-~-~~---~~~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+++... . . .| ..+.+.+++.++++.+. |+.+-+. +.+|++.|+.+.++......+..++-...+..
T Consensus 350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~ 426 (485)
T KOG0569|consen 350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP 426 (485)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332211 1 1 22 22344555555665553 4445554 57788899999999999999888777777655
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=199.98 Aligned_cols=330 Identities=14% Similarity=0.031 Sum_probs=223.9
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 037413 96 IKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWM 175 (530)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i 175 (530)
+..-.|.+.+.|.+.+.+.++.+|.++||+|||++++++++..++...+.+++.|+..+++.|++.|+..|......+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999777777999999999999999999
Q ss_pred hhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 037413 176 STMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLN 255 (530)
Q Consensus 176 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~ 255 (530)
+|.+++|+|+++++......++|.++||.+++++..+....+ .+-+-.+-++..++...-.....+++||+-..+++
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g---~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~ 222 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG---SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR 222 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc---cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 999999999999999999999999999999999988431111 11111212222222222112223334443211111
Q ss_pred ccccCC-----CCCC--CCh-hHHHHHhhhchhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 037413 256 TLQKKG-----DVPT--DKF-PKVLWYAITNYRTWI-------FVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVI 320 (530)
Q Consensus 256 ~~~~~~-----~~~~--~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (530)
..+..+ +.++ .+. +..-...++|+.... +.+-.+.+...+..+.++...+-.+.+|+++.+.|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~v 302 (451)
T KOG2615|consen 223 NDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKV 302 (451)
T ss_pred cccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheee
Confidence 100000 0000 001 011122344443222 2222333333344444444444457789999999998
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc
Q 037413 321 AATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII 400 (530)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 400 (530)
.+..++...+.+.......+|.+.- ....+...+.++.-.++++........++....+..+......+....++
T Consensus 303 l~~tGl~m~~~ql~~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv 377 (451)
T KOG2615|consen 303 LSTTGLLMLVIQLALVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLV 377 (451)
T ss_pred eehhhHHHHHHHHhccccccccccc-----hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 8877777766666555555554411 11233344444444555556666667788888888888877777777776
Q ss_pred c-ccccccccchhhhhhhhhhHHHHhhhhhhhhc
Q 037413 401 P-FISRRSLGVISGLTGAGGNFGSGLTQLLFFTS 433 (530)
Q Consensus 401 ~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~ 433 (530)
. ..|+++||+.+|+......++-++||.+.|..
T Consensus 378 ~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 378 HKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 5 66778999999999999999999999998773
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=207.17 Aligned_cols=357 Identities=13% Similarity=0.026 Sum_probs=239.4
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHH--HHHHHHHHHHhhhhh-HHHhhhhCCchhhHHHHHHH-HH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNA--GIASVSGSIFSRLVM-GAVCDLLGPRYGCAFLIMLS-AP 140 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~-g~l~dr~Grr~~l~~~~~~~-~~ 140 (530)
+..+...++..........+.+|.+.++.|.|.+++|++ .++..+...+.++++ ++..||+||||..++.+.+. ++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 455667777777777788899999999999999999997 466677777788888 44789999988875555332 22
Q ss_pred HHHHHH---hhhh-HHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 141 TVFSMV---FVSS-ARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 141 ~~~~~~---~~~~-~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
.....+ ...+ ...++..-++.++..+. .+..-++..|+.++++++...+....+..+|..+|+...+.+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-- 160 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-- 160 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 222222 1222 33334444444455554 4455577788888888888888887777788888777666777666
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 037413 216 AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295 (530)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (530)
|||.+|++.+++.++..+..++..++.++++ + .+++....+++.+|+|.++......++.....
T Consensus 161 -------gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 224 (390)
T TIGR02718 161 -------GQRPAFLLVACVPLASLVCVLWLKDRAVASP----E-----APLARRASLFRFFRRPLAWSLLALALLSAMTA 224 (390)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc----c-----cchhhHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 9999999999988877666655544322211 0 01112245678889998888777777776667
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH-HHHHh--h-
Q 037413 296 LTIDNVIAEYFFDRFNLKLHTAGVIAATFGM-ANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI-FCICL--G- 370 (530)
Q Consensus 296 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~--~- 370 (530)
.....+.+.|+.+ .|+++.+.+.+....++ ..+++.++.|++.||+++|+ ....+..+.++ .+... .
T Consensus 225 ~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~ 296 (390)
T TIGR02718 225 VSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-------TFILGVGLAGSLALLWFAQAA 296 (390)
T ss_pred HHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888877 69999999998887764 66677899999999999874 33333322211 11111 1
Q ss_pred --cCCcHHHHHHHHHHHHHHhhhhhcccccc-cccccc-ccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHH
Q 037413 371 --RASTLPLSILSMILFSITTQAACGATFGI-IPFISR-RSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLM 445 (530)
Q Consensus 371 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 445 (530)
...+....+....+.++..+...+..++. ....++ +.+++.+++.+...++|..++|.+.|. .+..++...+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 297 FWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSG 376 (390)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 11233333333344445556666666555 345555 789999999999999999999999887 4445554555444
Q ss_pred HH
Q 037413 446 GI 447 (530)
Q Consensus 446 ~~ 447 (530)
+.
T Consensus 377 ~~ 378 (390)
T TIGR02718 377 TV 378 (390)
T ss_pred HH
Confidence 33
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=214.55 Aligned_cols=358 Identities=11% Similarity=0.066 Sum_probs=252.6
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
+|..+...+..... ....+.++...+.+++++|+|.++++++.++. ..+.+++++.|++.||+|+|+++.++.+++++
T Consensus 26 Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~i 103 (591)
T PTZ00207 26 RFALLVLGAFCSIC-TSFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL 103 (591)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 55544444333332 23345666778899999999999999998774 44566788899999999999999999999999
Q ss_pred HHHHHHhh------hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 141 TVFSMVFV------SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 141 ~~~~~~~~------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
+.++++++ ++++.+++.|++.|+|.+. .+.+...+.+||| ++||+++|+...+.++|.++.+.+...+...
T Consensus 104 G~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~- 181 (591)
T PTZ00207 104 GTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD- 181 (591)
T ss_pred HHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999997 6899999999999999985 6777888999997 6899999999999999987533322222221
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC---------ccc----------------------------
Q 037413 214 RRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN---------LNT---------------------------- 256 (530)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~---------~~~---------------------------- 256 (530)
+|++.|++.+++.++++++.++++++.|... +++
T Consensus 182 ---------~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~ 252 (591)
T PTZ00207 182 ---------NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVIL 252 (591)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHH
Confidence 7888999999998888888888877655211 000
Q ss_pred -------------------------------c----------------c----c-C--C---------------CC----
Q 037413 257 -------------------------------L----------------Q----K-K--G---------------DV---- 263 (530)
Q Consensus 257 -------------------------------~----------------~----~-~--~---------------~~---- 263 (530)
. + + + . +.
T Consensus 253 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (591)
T PTZ00207 253 IILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVE 332 (591)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccc
Confidence 0 0 0 0 0 00
Q ss_pred -C-C---CChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHhhhhhhh
Q 037413 264 -P-T---DKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHT--AGVIAATFGMANIFARPLGG 336 (530)
Q Consensus 264 -~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g 336 (530)
+ + ....+.+++.+++..+|++.+.+++..+....+.+.+.+..+..-|.+.+. ...+.++.++.+.+|++..|
T Consensus 333 ~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g 412 (591)
T PTZ00207 333 TDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMS 412 (591)
T ss_pred ccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHH
Confidence 0 0 011236778888899999999999999888888888887776643663322 33377889999999999999
Q ss_pred HhhhhccCCCCC--cchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhh
Q 037413 337 LMSDMAARPFGM--RGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGL 414 (530)
Q Consensus 337 ~l~dr~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 414 (530)
.+.....+|+.. ..+...+.+..+ +.++.+++...-+...+++..++.|++.|..++.....++++..++.|+-+-+
T Consensus 413 ~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~ 491 (591)
T PTZ00207 413 YFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNF 491 (591)
T ss_pred HHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhH
Confidence 998444444311 122333334444 44433333333232567888899999999999888888765544888887777
Q ss_pred hhhhhhHHHHhh-hhhhhh
Q 037413 415 TGAGGNFGSGLT-QLLFFT 432 (530)
Q Consensus 415 ~~~~~~~g~~~~-~~~~~~ 432 (530)
.....-+|+.+- -.++|.
T Consensus 492 ~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 492 CFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 776666776554 334443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=203.93 Aligned_cols=387 Identities=12% Similarity=0.065 Sum_probs=256.2
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhc-C-------CChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchh
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNL-N-------LIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYG 130 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 130 (530)
.++.+.+.+.-++++.+.+|.+.++.+.|.+...| + .++.-.+.+..+..+|.++||++.|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 34667788888999999999999998888877655 2 345567888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhH
Q 037413 131 CAFLIMLSAPTVFSMVFVS-------SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGIT 202 (530)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 202 (530)
+...++++.+++++++++. -.+++...|++.|+|.|+ +|.+.++.+|...+++||...+...+..++|...|
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999888752 357889999999999999 99999999999999999999999999999999998
Q ss_pred HhHHHHHHHHHHhcCCCC------CCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC-----c-----cccccCC-----
Q 037413 203 QLLTPFIYELIRRAGATP------FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN-----L-----NTLQKKG----- 261 (530)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~-----~-----~~~~~~~----- 261 (530)
.+++-++...+....-.. ..-||..|.+.+++++++...-+. +||++.-. . .+.++..
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~-M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~ 275 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLK-MPETARYTALVSKKLKQAAGDMKKVLSVDIE 275 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhHHHHhhcCHhhhhhccccccccccc
Confidence 888777776664322110 113998888887766654443332 34432211 0 0000000
Q ss_pred --------CCCCCChhHHHHHhhhc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH--------HHHHHH
Q 037413 262 --------DVPTDKFPKVLWYAITN---YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHT--------AGVIAA 322 (530)
Q Consensus 262 --------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~~ 322 (530)
....++....+...+.. ++++..+...++.-..++....+....+.. .|+.+.+ .+....
T Consensus 276 ~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~ 354 (538)
T KOG0252|consen 276 AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNL 354 (538)
T ss_pred hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHH
Confidence 00001111112222222 334445555566666666666666665553 4443322 222222
Q ss_pred HHHH-HHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc----HHHHHHHHHHHH-HHhhhhhccc
Q 037413 323 TFGM-ANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST----LPLSILSMILFS-ITTQAACGAT 396 (530)
Q Consensus 323 ~~~~-~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g-~~~~~~~~~~ 396 (530)
+... ..+.|..+...++|++||+ ++.+.++.+..+..+.+....+ .....+...+.. ++..+.....
T Consensus 355 iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~tt 427 (538)
T KOG0252|consen 355 IIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATT 427 (538)
T ss_pred HHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCcee
Confidence 3333 3444888889999999999 4777777777777766654433 111222222222 2233334444
Q ss_pred ccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-cc-----CCCcchhHHHHHHHHHHHHH
Q 037413 397 FGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SS-----RHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 397 ~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~ 454 (530)
..+ .+.+|.+.|++..|+..+.+-.|++++...+.. .+ ..+....+++++.+..+..+
T Consensus 428 fivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~ 492 (538)
T KOG0252|consen 428 FIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGIL 492 (538)
T ss_pred EEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHh
Confidence 445 346777899999999999999999999999877 33 23444455555544444443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=215.32 Aligned_cols=335 Identities=14% Similarity=0.050 Sum_probs=219.2
Q ss_pred cccccchHHHHHhcC-----CCh--hhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHH
Q 037413 80 FAAAPLVPIIRDNLN-----LIK--TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSAR 152 (530)
Q Consensus 80 ~~~~~~~~~~~~~~~-----~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 152 (530)
...++....++++.. .+. .+.+++.+.+.++..++++++|+++|++|||+.++++.+++.++.+++++++|++
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~ 143 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY 143 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344556666665432 222 3559999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 037413 153 GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAP 231 (530)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (530)
+++++|+++|+|.|. ......+++|..|++.||...+..+....+|..++.+++...... . .+||..+.+.
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-------~-~~Wr~~~~~~ 215 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-------Y-AGWRIPLGLA 215 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-------C-ccHHHHHHHH
Confidence 999999999999996 678889999999999999999999999888887774333322111 0 3899999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccc------------cccCCCCCCCChhH-----------------HHHHh----hhc
Q 037413 232 GCLHVIMGILVLTLGQDLPDGNLNT------------LQKKGDVPTDKFPK-----------------VLWYA----ITN 278 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~------------~~~~~~~~~~~~~~-----------------~~~~~----~~~ 278 (530)
.+.+++..+. .++.||.|+.--+. .....+.+.+.... .++.+ .++
T Consensus 216 ~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (513)
T KOG0254|consen 216 LIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRK 294 (513)
T ss_pred HHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHH
Confidence 9999888888 77777777532110 00000000000000 01111 122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHH
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~ 358 (530)
+.++.+.+..+.+.........|.+.+++. .|.+... .....+.++..+++.+++.++.||+|||+ .++.+
T Consensus 295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~-------lll~s 365 (513)
T KOG0254|consen 295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK-------LLLFG 365 (513)
T ss_pred HHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHh
Confidence 222333333333343444445556666544 5666433 44444667778888888899999999994 44444
Q ss_pred HHHHHHHHHHhhc---C---------CcHHHHHHHHHHHHHHhh-hhhccccccc-cccccccccchhhhhhhhhhHHHH
Q 037413 359 QTLGGIFCICLGR---A---------STLPLSILSMILFSITTQ-AACGATFGII-PFISRRSLGVISGLTGAGGNFGSG 424 (530)
Q Consensus 359 ~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~ 424 (530)
.....++.+++.. . ...+..+...+++-..+. ...+..+.+. +.+|.+.|+.+.++....+.+.+.
T Consensus 366 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 366 AAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNF 445 (513)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHH
Confidence 4444443333221 0 112233333333333333 3344455554 466778899999999999988776
Q ss_pred hhhhhhhh
Q 037413 425 LTQLLFFT 432 (530)
Q Consensus 425 ~~~~~~~~ 432 (530)
+-...+..
T Consensus 446 ~v~~~~~~ 453 (513)
T KOG0254|consen 446 LISFFFPF 453 (513)
T ss_pred HHHHHHHH
Confidence 65555433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=193.88 Aligned_cols=363 Identities=13% Similarity=0.096 Sum_probs=275.2
Q ss_pred cCCcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHH
Q 037413 57 LASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIM 136 (530)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 136 (530)
..++||..+++..+..+.+.+.+..++++.......|+ +....-|+.-+|++.+....+++-++.|++|-|...+++..
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 34568888888888888899999999999888999999 77888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh------hhHH--HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHH
Q 037413 137 LSAPTVFSMVFV------SSAR--GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTP 207 (530)
Q Consensus 137 ~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 207 (530)
+.++|..+-..+ +.++ ....+..+.+.+.-. ......+..-||++++|..+..+-..+..+|.+++.++.|
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 999999987765 2344 555666666666664 3344588899999999999999998898999999998888
Q ss_pred HHHHHHHhcCCCCCCchhH--HHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHH
Q 037413 208 FIYELIRRAGATPFTAWRI--AFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFV 285 (530)
Q Consensus 208 ~l~~~~~~~~~~~~~~wr~--~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (530)
++...-. ..++..|-. .|+..++++.+..++..+..++.|+.+......... +.++.+..++.++|+++....
T Consensus 198 ilV~~~~---~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~--~~~f~~si~~~~~n~~F~il~ 272 (480)
T KOG2563|consen 198 ILVPSSK---DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ--DASFPKSIKSCFKNRQFIILA 272 (480)
T ss_pred eecCCCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh--cCcHHHHHHHHHcCccHHHHH
Confidence 8776431 112235644 466666666666666667767766654332221111 345789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHH
Q 037413 286 LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIF 365 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~ 365 (530)
+.+....+.+++..+.+..-+. ..|++...+|+......++++++.++.|.+.||.++-+ ....+......+.
T Consensus 273 ~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk------~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK------LTTLVLYLFALVG 345 (480)
T ss_pred HHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH------HHHHHHHHHHHHH
Confidence 9998888888877666653333 35788788999999999999999999999999987643 2222333222222
Q ss_pred -HHHhhc---CCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 366 -CICLGR---ASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 366 -~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+.+... ....+..+....++|++.....|+...+ ++...|..-++..|+.+..+++-+++-.++.+.
T Consensus 346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~ 417 (480)
T KOG2563|consen 346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI 417 (480)
T ss_pred HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence 222111 1234456666777888888888888888 778889888999999999999998888888666
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=203.80 Aligned_cols=353 Identities=11% Similarity=-0.008 Sum_probs=226.9
Q ss_pred HHHHHHHHHHhhhhccccccch-HHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh-hCCchhhHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLV-PIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL-LGPRYGCAFLIMLSAPTV 142 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~ 142 (530)
+..+++..+...+..+.+...+ ..+.+++|++.++.+++.+.+........+++|+++|| +|||+++.++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4445555555555544444444 44678999999999998888776666667899999999 599999999999999999
Q ss_pred HHHHhhh-hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCc--chhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 143 FSMVFVS-SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKI--IGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 143 ~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
+++++++ +.+.++++|+++|++.|. .+...+++.+++|+++ |..+++++..+.++|..+|+.+++++.+..
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~----- 177 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY----- 177 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 9998874 567778899999999996 6777799999998643 456788888999999999999998887766
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHH---hccCCCCCCcc-ccccCCC-----------------CCCCChhH-------
Q 037413 219 TPFTAWRIAFFAPGCLHVIMGILVLT---LGQDLPDGNLN-TLQKKGD-----------------VPTDKFPK------- 270 (530)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~---~~~~~p~~~~~-~~~~~~~-----------------~~~~~~~~------- 270 (530)
|||+.|++.++..++..+..++ ..++.++.++. +.+..+. ....+...
T Consensus 178 ----g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (500)
T PRK09584 178 ----GWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVA 253 (500)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999987654443333222 22222111100 0000000 00000000
Q ss_pred ---------H---HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCH------HHHHHHHHHHHHHHHh
Q 037413 271 ---------V---LWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFD--RFNLKL------HTAGVIAATFGMANIF 330 (530)
Q Consensus 271 ---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~------~~~~~~~~~~~~~~~~ 330 (530)
. ..+.-+ ++.+..+. .++....++......+.++.. ....+. ...+++.++..+..++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil 331 (500)
T PRK09584 254 LGIVVIFGKEAFAMKGAAR-RKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMI 331 (500)
T ss_pred HHHHHHHHHHHhhcCHHHH-HHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHH
Confidence 0 000111 22222222 222233334444444444332 111111 1245566677777777
Q ss_pred hhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCC---------cHHHHHHHHHHHHHHhhhhhcccccccc
Q 037413 331 ARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAS---------TLPLSILSMILFSITTQAACGATFGIIP 401 (530)
Q Consensus 331 ~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (530)
..++.+++-+|.++|.. ....+.+++++.+++++.+.... +.+......++.+++.....|...+++.
T Consensus 332 ~~p~~~~~~~~l~~r~~---~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~ 408 (500)
T PRK09584 332 GSPILAAIYNKMGDRLP---MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVA 408 (500)
T ss_pred HHHHHHHHHHHhCcCCC---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77777777777777642 23455566666666655543221 2456777888899999999999999864
Q ss_pred -ccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 402 -FISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 402 -~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
..|++.||..+|+......+|..++..+..
T Consensus 409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 409 QLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999888777777766666643
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-22 Score=192.57 Aligned_cols=354 Identities=16% Similarity=0.134 Sum_probs=251.9
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhC-CchhhHHHHHHHHHHHHHHH
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG-PRYGCAFLIMLSAPTVFSMV 146 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~ 146 (530)
+...+++.+.....+.|..+..-++.|.|..|+|.+.++..+...++++++|.++||++ +|+.+.+..++.++..+...
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666667788888899999999999999999999999999999999986 67788888888888777788
Q ss_pred hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhH-HHHHHHHHHhcCCCCCCch
Q 037413 147 FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLL-TPFIYELIRRAGATPFTAW 224 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~l~~~~~~~~~~~~~~w 224 (530)
..++++.+++.-++..+.... .+..-++..+... +++.-.|-.-.++++|.+++... +..+.... +..+.
T Consensus 87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~------~~~~~ 158 (400)
T PF03825_consen 87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL------GISGT 158 (400)
T ss_pred HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh------ccccc
Confidence 888999998888888887764 5666666666654 34555666667778888777543 22222222 11133
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 225 RIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAE 304 (530)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (530)
.+.+++.+...++.+...+ .+|+.|.++ +.+++.++....+..+++|+|+++.+.+..++.........++.+.
T Consensus 159 ~~~~~i~~~~~~ll~~~~l-~lp~~~~~~-----~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~ 232 (400)
T PF03825_consen 159 SLIFYIAAILSLLLAGFAL-FLPKTPPKR-----SAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSI 232 (400)
T ss_pred cHHHHHHHHHHHHHHHHHH-hCCCCcccc-----ccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665555444333 345555221 1111112222345567899999998888888888778888889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHH-
Q 037413 305 YFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA-STLPLSILSM- 382 (530)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 382 (530)
|+++.-|.+....+.+.++..++.++.-.+.+++..|+|.+ .++.++.....+=..++... ++.+..+...
T Consensus 233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-------~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~ 305 (400)
T PF03825_consen 233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-------WLLLLALVAYAVRWLLYAYFSDPWPFIVALQL 305 (400)
T ss_pred HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99886558888888888888888999889999999999877 47777777777766666555 4444333322
Q ss_pred ---HHHHHHhhhhhcccccccc-ccccccccchhhhhhhhh-hHHHHhhhhhhhh-ccCCCcchhH
Q 037413 383 ---ILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGG-NFGSGLTQLLFFT-SSRHSTATGI 442 (530)
Q Consensus 383 ---~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~ 442 (530)
.+.|+.++..+.....+++ ..|++.|+++.++++... .+|..+|..+.|. .+.++.+..+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 3578888878777778865 678889999999998765 5888999999887 4455555443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=184.82 Aligned_cols=376 Identities=18% Similarity=0.176 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHH-HhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH--HH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIR-DNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS--AP 140 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~~ 140 (530)
..+.....++..++.+....|..+..- +..|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+. ..
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~ 87 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLF 87 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 344455555555566666666677654 458999999999999999999999999999999999666544333222 22
Q ss_pred HH-HHHHhhhhH-HHHHHHHHHHHhhhh----h-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 141 TV-FSMVFVSSA-RGYIAARFMIGFSLA----T-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 141 ~~-~~~~~~~~~-~~l~~~r~l~G~~~~----~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
+. +...+.+-. ..+.++-++.|+..+ + .+..-+++.++.. +.+.=.|-.-.++++|.+++..++|.+.+.
T Consensus 88 ~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i- 164 (412)
T PF01306_consen 88 GPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNI- 164 (412)
T ss_dssp HHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeee-
Confidence 22 222222211 112233333334333 2 3333355544442 334555666677799999999999988875
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHH
Q 037413 214 RRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLG 293 (530)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (530)
+-+..||+....+++..++.++..++.++..... +.++.++++...++..+++|+|++|.+.+.......
T Consensus 165 ---------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~ 234 (412)
T PF01306_consen 165 ---------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-DALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAA 234 (412)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-TTSSS------HHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred ---------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-cccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4578888877766666665555544433332111 111111122224567889999999999998888878
Q ss_pred HHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 037413 294 IELTIDNVIAEYFFDRF---NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG 370 (530)
Q Consensus 294 ~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (530)
.+..+.+.++.|+...+ +.+....|.+.++..+..++...+..++.+|+|.|+ .+.++..++.+=.....
T Consensus 235 ~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~-------~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 235 IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN-------LLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-------HHHHHHHHHHHHHHHHh
Confidence 88888777888887643 344567888888888999999999999999999984 77777777888788888
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhh-hhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHH
Q 037413 371 RASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLT-GAGGNFGSGLTQLLFFT-SSRHSTATGISLMGI 447 (530)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 447 (530)
..++++.+...-.+.++-........+-++. ..+++..++...+. +...++|.++.+.+.|. -|..+.+..+.+++.
T Consensus 308 ~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~ 387 (412)
T PF01306_consen 308 FATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL 387 (412)
T ss_dssp T--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence 8899998888888888888887777777755 67778888888885 66777888888888777 556676777777776
Q ss_pred HHHHHHHHHHHh
Q 037413 448 MIVCCTFPVALV 459 (530)
Q Consensus 448 ~~~~~~~~~~~~ 459 (530)
+.+...+.....
T Consensus 388 iv~~~~li~~f~ 399 (412)
T PF01306_consen 388 IVLPFTLISAFT 399 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHheee
Confidence 655555444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=194.50 Aligned_cols=331 Identities=13% Similarity=0.065 Sum_probs=226.9
Q ss_pred cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh----hCC-chhhHHHHHHHHHHHHHHHhhhh------HH
Q 037413 84 PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL----LGP-RYGCAFLIMLSAPTVFSMVFVSS------AR 152 (530)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~ 152 (530)
.+...+.+++|++..++|.+.++..+..++..++.|.++|| +|| |+.++.+.+..+++.++....++ ++
T Consensus 31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~ 110 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII 110 (444)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 34556888999999999999999999999999999999999 776 56676787777777766554432 45
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHhhhc-cCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHH
Q 037413 153 GYIAARFMIGFSLAT-FVSCQYWMSTMF-NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFA 230 (530)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (530)
.+++..++.+++... ..+..++.+|+. ++++|++..++.....++|..+++.+...+...+... ....+|+..+.+
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~--~~~~g~~~~~~i 188 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG--DEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--chhhhHHHHHHH
Confidence 666677777777665 455568889988 4578999989988888898888877665555443211 123489999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037413 231 PGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRF 310 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (530)
.++++++..++.++..+|.++.+ ++++.+.++.++..++||.++.+.+..++.......... ...|+.+..
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~~--------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~ 259 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTPE--------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYV 259 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCCC--------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhh-hhheeeeee
Confidence 98888777766666655532211 112234567888999999988887776655444443333 333443322
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH-HH-HHhhcCCcHHHHHHHHHHHHHH
Q 037413 311 NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI-FC-ICLGRASTLPLSILSMILFSIT 388 (530)
Q Consensus 311 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~ 388 (530)
-.+....+.+.....+..+++.++.+++.||+++|+ ....+..+..+ .+ +.+...++.+..++..++.+++
T Consensus 260 ~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~ 332 (444)
T PRK09669 260 LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-------AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFI 332 (444)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 223334444555566778888899999999999874 33333322222 12 1122234566666777788888
Q ss_pred hhhhhccccccccccc--------cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 389 TQAACGATFGIIPFIS--------RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 389 ~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.+...+..+++..++. .+..|..+|+.+.+..+|..+++.+.|.
T Consensus 333 ~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 333 QNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888865432 2345677888888889999998888665
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=201.90 Aligned_cols=319 Identities=16% Similarity=0.096 Sum_probs=219.0
Q ss_pred HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-h
Q 037413 90 RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-F 168 (530)
Q Consensus 90 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~ 168 (530)
.+.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++ .
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 456677888899999999999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred hhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccC
Q 037413 169 VSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQD 248 (530)
Q Consensus 169 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (530)
..+..++.|++++++|+.+..+ ......|..+++..++++.. +||+.+++..+++++..++ +++.+|
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----------~Wr~~~~~~~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----------DWRWLFWIISIPSGLFLLL-WFLPPE 256 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHH-HHccCc
Confidence 8889999999999999999998 55555666555555544443 8999999999998877666 555556
Q ss_pred CCCCCccc---------ccc---C---CCCCCCCh----------------hHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 037413 249 LPDGNLNT---------LQK---K---GDVPTDKF----------------PKVLWYAITNYRTWIFVLLYGMSLGIELT 297 (530)
Q Consensus 249 ~p~~~~~~---------~~~---~---~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
.|+....+ .++ . ........ ...+...++.|++....+...+....+ .
T Consensus 257 s~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-~ 335 (521)
T KOG0255|consen 257 SPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-S 335 (521)
T ss_pred ChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-h
Confidence 66431100 000 0 00000000 011234445554333333322222111 1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcH--
Q 037413 298 IDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTL-- 375 (530)
Q Consensus 298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 375 (530)
...+.-.+....+|.+.... ..+.+.....+....+...|+.||| .....+..+.+++++........
T Consensus 336 ~~y~gl~~~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (521)
T KOG0255|consen 336 LVYYGLSLNVSGLGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRR-------PPLFLSLFLAGIGLLLFGWLPDDLG 405 (521)
T ss_pred HHHHhhhhhhhhcCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHhhccch
Confidence 11122222223344444332 2334446677777788999999888 46667777777766666554422
Q ss_pred -HHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 376 -PLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 376 -~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+...+...+..++.+..+...+.+ .+.+|...|+.+.+.......++++++|.+...
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~ 464 (521)
T KOG0255|consen 406 GWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLL 464 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444445555556666666666 456777789999999999999999999999654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=193.97 Aligned_cols=335 Identities=10% Similarity=0.011 Sum_probs=225.1
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhh----hhCC-chhhHHHHHHHHHHHHHHHhhh------hHHH
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCD----LLGP-RYGCAFLIMLSAPTVFSMVFVS------SARG 153 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~ 153 (530)
+...+.+.+|++...+|.+..+..+..++..++.|.++| |+|| |+.++++.+..+++.++....+ .+..
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 445577888999999999999999999999999999999 6697 6777788888888766664432 2345
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhc-cCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMF-NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAP 231 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (530)
+++..++.+++... ..+..++..|.. ++++|.+..++...+.++|..+.+.+...+...+.. .+...+|+....+.
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~i~ 186 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG--GDRGFGFQMFTLVL 186 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CchhhhHHHHHHHH
Confidence 56666777777775 456668889988 588999999987777777766655444333332211 11223788888888
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 037413 232 GCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 311 (530)
+++.++..++.++..||.++.+. .+.+++++.+.++.++.+++||.++.+++..++..........+.+ |+.+...
T Consensus 187 ~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~~ 262 (473)
T PRK10429 187 IAFFIVSTIITLRNVHEVYSSDN---QVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAI-YYFTYVI 262 (473)
T ss_pred HHHHHHHHHHHHcCceecCCccc---cccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhee-eEEEEEC
Confidence 88777766666666666432211 0111223345677778888999888887777766665555555555 4433333
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH---HHHHh--hcCCcHHHHHHHHHHHH
Q 037413 312 LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI---FCICL--GRASTLPLSILSMILFS 386 (530)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~g 386 (530)
.+....+.+.....++.+++.++.+++.||+|+|+ ...++..+..+ .+... ....+.+..++..++.+
T Consensus 263 ~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 335 (473)
T PRK10429 263 GDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-------LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN 335 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 45556666666777888999999999999999984 33333322222 21111 12334555566666777
Q ss_pred HHhhhhhcccccccccc-c-------cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 387 ITTQAACGATFGIIPFI-S-------RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 387 ~~~~~~~~~~~~~~~~~-~-------~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
++.+...+..+++..+. + .+..|..+|....+..++..+++.+.|.
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777765433 2 3446668899999999999888888665
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=184.26 Aligned_cols=389 Identities=9% Similarity=0.026 Sum_probs=248.0
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhh----hhCCchhhHHH-H
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCD----LLGPRYGCAFL-I 135 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~ 135 (530)
.|+++.+.....-+ .+.+....+..+.+.+++|.+..+.+++..+..+...+.+++.|.++| |+|||+.++++ .
T Consensus 3 ~~~li~~~~~~~Gi-q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 3 LRKLLRVASVAAGV-QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 34444444333333 334444455666677899999999999999999999999999999999 59999988774 6
Q ss_pred HHHHHHHHHHHhhhhHHH-----------------HHHHHHHHHhhhhh-hhhHHHHHhhhccCCcc--hhhHhHhhhhh
Q 037413 136 MLSAPTVFSMVFVSSARG-----------------YIAARFMIGFSLAT-FVSCQYWMSTMFNGKII--GLVNGTAAGWG 195 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r--~~~~~~~~~~~ 195 (530)
+..+++.++.+++++++. ++++-.+..++... .++..++++|.+|+++| +.+.++.+.+.
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 666777777777766532 22233333445554 56778999999998765 58999999999
Q ss_pred hhhhhhHHhHHHHHH--HHHHhc--CCCC--CCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc-----ccCCCCC
Q 037413 196 NMGGGITQLLTPFIY--ELIRRA--GATP--FTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTL-----QKKGDVP 264 (530)
Q Consensus 196 ~~G~~~~~~~~~~l~--~~~~~~--~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~ 264 (530)
++|.++|+.++++.. ..+... ...+ -.+.|+.|++.+++.++..++..+..+|.|....++. ++.++..
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~ 241 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHG 241 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccc
Confidence 999999998887642 211100 0000 1267999999999888888888888888653211111 0010111
Q ss_pred CCC-hhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH------HHH---H-HHHHHHHHHHHhh
Q 037413 265 TDK-FPKVLWYAIT-NYRTWIFVLLYGMSLGIELTIDNVIAEYFFD-RFNLKL------HTA---G-VIAATFGMANIFA 331 (530)
Q Consensus 265 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~------~~~---~-~~~~~~~~~~~~~ 331 (530)
.++ +++.++...+ .|.++.+++..++.+..++.+..|.+.|+.+ .++-++ ++. | +....+.+...+.
T Consensus 242 ~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~ 321 (477)
T TIGR01301 242 EEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGIT 321 (477)
T ss_pred hhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222222222 2567889999999999999888888888764 454322 111 2 2333455555666
Q ss_pred hhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc---------------------HHHHHHHHHHHHHHhh
Q 037413 332 RPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST---------------------LPLSILSMILFSITTQ 390 (530)
Q Consensus 332 ~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~ 390 (530)
.++..++.+|+|+|+ ..-.++.++.++++....+..+ .+..++.+.+.|+...
T Consensus 322 s~~l~~l~~~~g~~k------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A 395 (477)
T TIGR01301 322 SIGMEKLCRGWGAGK------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA 395 (477)
T ss_pred HHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence 777888888888542 2323443344433333221110 2556677778888888
Q ss_pred hhhcccccccc-cccc--ccccchhhhhhhhhhHHHHhhhhhhhh-ccCC--CcchhHHHHHHHHHHHHHHH
Q 037413 391 AACGATFGIIP-FISR--RSLGVISGLTGAGGNFGSGLTQLLFFT-SSRH--STATGISLMGIMIVCCTFPV 456 (530)
Q Consensus 391 ~~~~~~~~~~~-~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 456 (530)
..+..-++++. ..++ +..|..+|+.|.+-.+..++.....|. .+.. +....+.+.++..+++.+..
T Consensus 396 ~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 396 ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 88888888865 5553 467999999999998888777766555 2222 23344444455555554443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-20 Score=184.82 Aligned_cols=351 Identities=16% Similarity=0.079 Sum_probs=247.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhh-HHHHHHHHHHHHHHHhh-h-hHHHHHHHHHHHHhhhhh-hhhHHH
Q 037413 98 TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGC-AFLIMLSAPTVFSMVFV-S-SARGYIAARFMIGFSLAT-FVSCQY 173 (530)
Q Consensus 98 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (530)
+..++..++..+..++..++.|.++|+-|+||.+ .+..++..+++++..+. + +++...+.-++.-++.+. .....+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999966554 45555555666666664 3 344444444555555554 556669
Q ss_pred HHhhhccCCcc--------------------------hhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHH
Q 037413 174 WMSTMFNGKII--------------------------GLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIA 227 (530)
Q Consensus 174 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (530)
++.+..+++++ ++..+.-.+.+++|.++..++.-.+....... .++..+-|..
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-~~~~~~~r~~ 228 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-ASNTWAIRVA 228 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-cccchhhhHH
Confidence 99999998888 89888888888888877665543333222111 1123356999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccccccC-CCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 228 FFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKK-GDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYF 306 (530)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (530)
+.+.++.-++..+..++..|+.|..+..+.... -...-++.++.+++..+.|.+..+++..++..-...++......|.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a 308 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA 308 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888776311100000 0001123345567777888899999998888888888888899999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH-HHHHHHhh-------cCCcHHHH
Q 037413 307 FDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG-GIFCICLG-------RASTLPLS 378 (530)
Q Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~ 378 (530)
.+.+|++..+...+..+..+.+++|.++.|++.||+|.|.. + .+.++..+. .+.+..+. -..+.+..
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~---~--~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f 383 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK---R--TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF 383 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---H--HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence 99999999999999999999999999999999999998721 1 222222222 11111111 13466778
Q ss_pred HHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccC-CCcchhHHHHHHHHHHHHH
Q 037413 379 ILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSR-HSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 454 (530)
++..++.|++.+...+..-++ .+..|+++.+..+|++.......+.+||.+++. .+. .+.+.++..+.++.+++.+
T Consensus 384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ 462 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI 462 (477)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 888889999999999988888 558888899999999999999999999999988 332 3355555555444444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=195.82 Aligned_cols=350 Identities=13% Similarity=-0.002 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhC-----CchhhHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG-----PRYGCAFLIML 137 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~ 137 (530)
..+.++...++...+.......+.+.+++++|++.++++...++..+...+-.+ +|+++||++ ||+.++++.++
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 445555666777777644455677778889999999999999999999998555 999999997 77888888777
Q ss_pred HH-HHHHHHHhhhhHHHHH-HHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHh---hhhhhhhhhhHHhHHHHHHH
Q 037413 138 SA-PTVFSMVFVSSARGYI-AARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTA---AGWGNMGGGITQLLTPFIYE 211 (530)
Q Consensus 138 ~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~~~~~~~~l~~ 211 (530)
.+ ++....+..++..... +..++.+++.+. ..++-++..|..+ +++....+.. ....++|..+|+.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 4444444445544444 478899999886 6777899999998 4544433333 23334788888888888877
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCC----C---C----CCCChhHHHHHhhhchh
Q 037413 212 LIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKG----D---V----PTDKFPKVLWYAITNYR 280 (530)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~---~----~~~~~~~~~~~~~~~~~ 280 (530)
.. +||..|++.+++.++..+ ..++.+|.+.....+..++. . . ..++....+++.+++|.
T Consensus 184 ~~---------~~~~~f~~~a~l~ll~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 253 (468)
T TIGR00788 184 KT---------LTRILFLITAALLLLQLF-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLE 253 (468)
T ss_pred hc---------CcchHHHHHHHHHHHHHH-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHH
Confidence 66 999999999888877743 34455553211000000000 0 0 00111234556678888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHH
Q 037413 281 TWIFVLLYGM-SLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQ 359 (530)
Q Consensus 281 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~ 359 (530)
++...+..++ ..........+. .+..+..|+++...|.+....+++.+++..+.+++.+|++.| ..+.++.
T Consensus 254 i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r-------~~l~~~~ 325 (468)
T TIGR00788 254 IAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR-------LLFGVTT 325 (468)
T ss_pred HHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH-------HHHHHHH
Confidence 8776555544 211111111100 022346899999999999999999999999988888888766 3555555
Q ss_pred HHHHHHHHHhh-c---------CCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhh
Q 037413 360 TLGGIFCICLG-R---------ASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQL 428 (530)
Q Consensus 360 ~~~~~~~~~~~-~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 428 (530)
++.+++.+... . .++.+......++.+++.+..+.+...+ .+..|++.+|+.+++.+.+.++|..+++.
T Consensus 326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~ 405 (468)
T TIGR00788 326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF 405 (468)
T ss_pred HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence 55554432221 0 1223334445566677777776666666 45778889999999999999999999998
Q ss_pred hhhh
Q 037413 429 LFFT 432 (530)
Q Consensus 429 ~~~~ 432 (530)
+.+.
T Consensus 406 ~gg~ 409 (468)
T TIGR00788 406 LGVL 409 (468)
T ss_pred HHHH
Confidence 7665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-27 Score=235.68 Aligned_cols=318 Identities=18% Similarity=0.147 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhhhh-hhhHHH
Q 037413 98 TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS---SARGYIAARFMIGFSLAT-FVSCQY 173 (530)
Q Consensus 98 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (530)
.+.+++.+...++..+|+++.|.++||+|||+.+.++.++..++.++.++++ |++.++++|+++|++.|. .+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3578899999999999999999999999999999999999999999999999 999999999999999996 788899
Q ss_pred HHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 037413 174 WMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN 253 (530)
Q Consensus 174 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 253 (530)
++.|..|+++|++..++.+.+..+|..++..++..+.... +..+||+.+++.++++++..+.. +++||+|+.-
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~------~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL 198 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS------DNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWL 198 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccc-ccccccccee
Confidence 9999999999999999999999999888876654442221 12369999999998887665544 5567777431
Q ss_pred ccc---------ccc---------CCCCCCCChh------HHHHHhhhchh----HHHHHHHHHHHHHHH-HHHHHHHHH
Q 037413 254 LNT---------LQK---------KGDVPTDKFP------KVLWYAITNYR----TWIFVLLYGMSLGIE-LTIDNVIAE 304 (530)
Q Consensus 254 ~~~---------~~~---------~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 304 (530)
..+ .++ +.++..++.. ..++++++++. +........+..... .....+.+.
T Consensus 199 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 278 (451)
T PF00083_consen 199 LSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPS 278 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence 100 000 0000000000 11334444432 222222222222222 222333343
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCc----H
Q 037413 305 YFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG-----RAST----L 375 (530)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~ 375 (530)
+.+..+.+.. -.......+...++.+++.++.||+|||+ ....+..+.+++.+.+. ...+ .
T Consensus 279 -i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T PF00083_consen 279 -IFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK-------LLIIGLLLMAICSLILGIIFFLGVSSSSWWS 348 (451)
T ss_pred -cccccccccc--ccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 3344566655 22223455667777888889999999995 33333333333332221 1111 1
Q ss_pred HHHHHHHHHHHHHhh-hhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 376 PLSILSMILFSITTQ-AACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 376 ~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
...+....+..++.+ ...+..+.+ .+.+|.+.|+++.|+....+.++++++|.+...
T Consensus 349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred cccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 122222222222333 334555566 457788899999999999999999999888655
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=177.33 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=201.3
Q ss_pred HhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc-----CC-
Q 037413 146 VFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA-----GA- 218 (530)
Q Consensus 146 ~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~-----~~- 218 (530)
+...+|+.++++-++.|.|.+. .+....++++..+++++++.+++.+.+.++|..++|++++.+....... +.
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3457899999999999999996 8899999999999999999999999999999999998888766321000 00
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 037413 219 -TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELT 297 (530)
Q Consensus 219 -~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
....+|+++|++.+.+.++..+++.+. + .||.++++.++... +++ ...++.+++|.++...+..++..+...+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~-~-~p~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~f~yvg~e~~ 158 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFL-P-LPELQEADVARVSS--GDT--TQKTSAFQFTHLVLGALGIFVYVGAEVS 158 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-CCCCCccccccccc--ccc--cchhhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 001279999998877766655544333 2 23322111111101 111 1123456788888888888888889999
Q ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcH
Q 037413 298 IDNVIAEYFFDR--FNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTL 375 (530)
Q Consensus 298 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (530)
...|++.|+.+. +|+++.+.+...+.+..+.++|+++++++.||+++|+ .+.++..+..++.++....++.
T Consensus 159 ~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-------~l~~~~~l~~~~~~l~~~~~~~ 231 (310)
T TIGR01272 159 AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-------YLAFNAFLAVLLSIGAALTHGY 231 (310)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999864 6999999999999999999999999999999999873 3334444444443333333333
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHH
Q 037413 376 PLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGIS 443 (530)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 443 (530)
. ......+.|++.+..+|...+...+..+++.+++.++. ..+.+|+++.|.+.|. .|..+.+.+++
T Consensus 232 ~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 232 V-AMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 3 33456678899999999988885543344556677775 5677999999998887 56566555554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=189.46 Aligned_cols=332 Identities=13% Similarity=0.081 Sum_probs=253.1
Q ss_pred cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhh----hhCCc-hhhHHHHHHHHHHHHHHHhh-h-------h
Q 037413 84 PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCD----LLGPR-YGCAFLIMLSAPTVFSMVFV-S-------S 150 (530)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr-~~l~~~~~~~~~~~~~~~~~-~-------~ 150 (530)
.+.+.+.+.+|+++..+|.+..+..+..++..++.|.++| |+||| +.++++.+..+++.++.... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4556678889999999999999999999999999999999 89955 56667888888888887765 3 2
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHhhhcc-CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCC-CchhHH
Q 037413 151 ARGYIAARFMIGFSLAT-FVSCQYWMSTMFN-GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPF-TAWRIA 227 (530)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~-~~wr~~ 227 (530)
+..+++..++..++... ..+..++..|..+ +++|.+..+....+..+|..+...+.+.+...+... .. .+|++.
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~---~~~~~~~~~ 179 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG---DTSNGYRWM 179 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC---ccchHHHHH
Confidence 33456677777777775 5666789999997 578999999998888888877777777666554211 11 279999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 228 FFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFF 307 (530)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (530)
.++.+++.++..++.++..||.++ +.++++++.+.++.++..++||.++.+.+..++............+.|.+
T Consensus 180 ~~v~~iv~~v~~~i~~~~~ke~~~------~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~ 253 (428)
T PF13347_consen 180 ALVLAIVGLVFFLITFFFVKERSV------EVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFT 253 (428)
T ss_pred HHHHHHHHHHHhhhhhheeeeccc------cccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999999999888888888777211 11223344456677889999999998888888877777777777777777
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHH
Q 037413 308 DRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA--STLPLSILSMILF 385 (530)
Q Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 385 (530)
...|.+ ...+.+.....++.+++.++.++++||+|+|+ ....+..+.+++.+++... ++.+..++..++.
T Consensus 254 ~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 325 (428)
T PF13347_consen 254 YVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-------VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILA 325 (428)
T ss_pred HHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-------ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 777777 55667777888899999999999999999985 4444444444444443333 4778888888999
Q ss_pred HHHhhhhhccccccccccc--------cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 386 SITTQAACGATFGIIPFIS--------RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
|++.+..+...+++..++- .+..|..+|+.+....++..+++.+.+.
T Consensus 326 gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 326 GIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred HhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999988888888865432 3457888999999999888888877554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=177.40 Aligned_cols=360 Identities=13% Similarity=0.042 Sum_probs=222.0
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLS 138 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~ 138 (530)
+++.+..++...+...+..+.+...+|. +.+++|+++.+.+.+.+.+.....++.+++|+++||+ |||+++.++.++.
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 3444555555555555555555555555 5678999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCC--cchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 139 APTVFSMVFVS-SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGK--IIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 139 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
+++.++.++.+ +...++++..+.++|.|. .+...++++|.+|++ +|..++++.....++|..++|.+.+.+.+..
T Consensus 87 ~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~- 165 (493)
T PRK15462 87 AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY- 165 (493)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 99988776543 223344444555566665 456678999999875 6889999999999999999999888887655
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCCh----------------------hHHH
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKF----------------------PKVL 272 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----------------------~~~~ 272 (530)
|||+.|.+.++.. +.+++.+++.++..++.... +++..++++.. ....
T Consensus 166 --------Gw~~~F~iaaigm-~l~li~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (493)
T PRK15462 166 --------SWAMGFGLAAVGM-IAGLVIFLCGNRHFTHTRGV-NKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEW 235 (493)
T ss_pred --------ChHHHHHHHHHHH-HHHHHHHHHhhhhhccCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876644 44444444333221110000 00000000000 0000
Q ss_pred --------------------HHhh---hchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHH
Q 037413 273 --------------------WYAI---TNYRTWIFVLL---YGMSLGIELTIDNVIAEYFFDR-----FNLKLHTAGVIA 321 (530)
Q Consensus 273 --------------------~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~ 321 (530)
+... .+++.+.+.+. ..+.+..+....+.+..|..+. +|++. ..++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~q 314 (493)
T PRK15462 236 SVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQ 314 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHH
Confidence 0000 01222222222 2222333333333444444432 23221 244566
Q ss_pred HHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc-----C----CcHHHHHHHHHHHHHHhhhh
Q 037413 322 ATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR-----A----STLPLSILSMILFSITTQAA 392 (530)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~g~~~~~~ 392 (530)
++..+..++..++.+++-.|..+|+.......=..+++++.+++++.+.. . .+.++++...++.++|.-+.
T Consensus 315 slNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~ 394 (493)
T PRK15462 315 SINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFI 394 (493)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 67777777777877777777644321111111233445555554433321 1 25566777888889999999
Q ss_pred hcccccccc-ccccccccchhhhhhhhh-hHHHHhhhhhhhh
Q 037413 393 CGATFGIIP-FISRRSLGVISGLTGAGG-NFGSGLTQLLFFT 432 (530)
Q Consensus 393 ~~~~~~~~~-~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~~~ 432 (530)
.|...+++. ..|++.+|..+|+..... .+|..++..+.+.
T Consensus 395 sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 395 DPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred ChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999976 556678999999986643 5676666666444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=184.32 Aligned_cols=329 Identities=10% Similarity=-0.000 Sum_probs=207.3
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh----CCch-hhHHHHHHHHHHHHHH-Hh----hh--hHH
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL----GPRY-GCAFLIMLSAPTVFSM-VF----VS--SAR 152 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~-~l~~~~~~~~~~~~~~-~~----~~--~~~ 152 (530)
+.+.+++.+|++..++|.+.+...+..++..++.|+++||. |||+ .+.++.+...+..++. .. ++ ..+
T Consensus 31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 34567888999999999999999999999999999999996 6665 4456655555444443 21 11 223
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHhhhcc-CCcchhhHhHhhhhhhhh-hhhHHhHHHHHHHHHHhcCCCCCCchhHHHH
Q 037413 153 GYIAARFMIGFSLAT-FVSCQYWMSTMFN-GKIIGLVNGTAAGWGNMG-GGITQLLTPFIYELIRRAGATPFTAWRIAFF 229 (530)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G-~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (530)
.+++..++.+++.+. .++..++..+... +++|.+..++-..+.++| ..++..++|.+....... ...+|.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~---~~~~~~~~~~ 187 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEE---MVSVYHFWTI 187 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---hhhhHHHHHH
Confidence 344555677777775 4455566666554 467888776665444443 223333444443321000 0002222222
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037413 230 APGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDR 309 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (530)
+.++++++..++.+...||.++. +.++.+.++.++.+++||.++...+..++.+..+.....+.+.|+++.
T Consensus 188 ~~~v~~~~~~~~~~~~~~e~~~~---------~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (448)
T PRK09848 188 VLAIAGMVLYFICFKSTRENVVR---------IVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV 258 (448)
T ss_pred HHHHHHHHHHHHHHcCcEeccCC---------CccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee
Confidence 33333333333333333332211 111234566788899999999888888777777777777777778777
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHH
Q 037413 310 FNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA--STLPLSILSMILFSI 387 (530)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 387 (530)
+|.+....++......++.+++.++.+++.||+++|+ .+.++..+..++.+.+... .+.+...+..++.++
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-------~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~ 331 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-------TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASI 331 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 8877766655554445677888999999999999873 4444544444443333332 345555566677888
Q ss_pred Hhhhhhcccccccccc-c-------cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 388 TTQAACGATFGIIPFI-S-------RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 388 ~~~~~~~~~~~~~~~~-~-------~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+.+...+..+++..+. + .+..|..+|+.+....+|..+++.+.+.
T Consensus 332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777775433 2 2356889999999999999998888655
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=172.43 Aligned_cols=335 Identities=11% Similarity=0.041 Sum_probs=258.3
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh----hC-CchhhHHHHHHHHHHHHHHHhhhh------HHH
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL----LG-PRYGCAFLIMLSAPTVFSMVFVSS------ARG 153 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~G-rr~~l~~~~~~~~~~~~~~~~~~~------~~~ 153 (530)
++-.+.+.+|+++..+|.+..+.-+--++..|+.|.+.|| +| ||+.++.+.+..++...++-.+++ ...
T Consensus 35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y 114 (467)
T COG2211 35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY 114 (467)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence 3445778899999999999999999999999999999998 67 456788888999999888877763 455
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhcc-CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMFN-GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAP 231 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (530)
.++..++.+++... ..+-.++..++.+ ++||.+..+.-+.+.++|..+...+.+.+...+...+ ...||+..-.+.
T Consensus 115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~--~~~g~~~~~~~~ 192 (467)
T COG2211 115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGD--KALGYQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhhHHHHHHHH
Confidence 67778888888885 5555677788775 6899999999999999998888877767666653221 144899999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 037413 232 GCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 311 (530)
+++..+..+.+++-.+|++.+. ...+...+.++.+.+...++||.+...++...+.........+....|.+...|
T Consensus 193 ~vi~~i~~l~~~~~v~ER~~~~----~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg 268 (467)
T COG2211 193 GVIGVILLLFCFFNVKERVVET----QPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLG 268 (467)
T ss_pred HHHHHHHHHHHHHHhhcccCcc----ccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcC
Confidence 9999988888888888766532 111112445566677788999999988887777777777777777777777778
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHHh
Q 037413 312 LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA--STLPLSILSMILFSITT 389 (530)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~ 389 (530)
.+.....+.......+.+++.++..++.+|+|+|+ +..++.++..++.+++.+. ++.+..++..++.+++.
T Consensus 269 ~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-------~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~ 341 (467)
T COG2211 269 DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-------LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGT 341 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence 88888878777787788888999999999999984 5555555555555444443 35667777778889999
Q ss_pred hhhhccccccccccc--------cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 390 QAACGATFGIIPFIS--------RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 390 ~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+...+..++++++.. .+..|..+|...++.-+|.+++..+.|.
T Consensus 342 ~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 342 GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976542 4567888999898888888777766443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-18 Score=169.32 Aligned_cols=329 Identities=10% Similarity=-0.012 Sum_probs=212.9
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh----hCCc-hhhHHHHHHHHHHHHHHHhhhh------HHH
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL----LGPR-YGCAFLIMLSAPTVFSMVFVSS------ARG 153 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~ 153 (530)
+...+.+.+|+++..+|.+..+.-+.-++..|+.|.++|| +||| +.++++.+..+++.+++-..++ +..
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4455778899999999999999999999999999999997 6865 6667787888887777654442 445
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhcc-CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMFN-GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAP 231 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (530)
+++..++..++... ..+-.++..|..+ ++||.+..++...+.++|..+++.+...+...... .+...+|+....+.
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~--~~~~~g~~~~~~i~ 189 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG--DNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CchhhhHHHHHHHH
Confidence 66666777777775 4555688888886 78999999999999889888887766555444321 11223789888888
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 037413 232 GCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 311 (530)
+++.+++.++.++..+|.++. ++++.+.++.++..++||.++.+....++..............|.....|
T Consensus 190 ~ii~~i~~~i~~~~~kE~~~~---------~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g 260 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKERVEA---------PPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG 260 (460)
T ss_pred HHHHHHHHHHHHhcceeccCC---------CccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC
Confidence 887777766666555443221 11223466778888999988777655555444433333333333333334
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH-HHHHhhc-CCcHHHHHHHHHHHHHHh
Q 037413 312 LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI-FCICLGR-ASTLPLSILSMILFSITT 389 (530)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~~~ 389 (530)
. ....+.+.....++++++.+++++++||+++|+ ....+..+..+ .+++... ..+.+..++..++.+++.
T Consensus 261 ~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 332 (460)
T PRK11462 261 T-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-------IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLH 332 (460)
T ss_pred C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 3 334455666777888899999999999999873 22211111111 1222111 222333344445566666
Q ss_pred hhhhccccccccccc--------cccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 390 QAACGATFGIIPFIS--------RRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 390 ~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+...+..+++.++.. .+..|..++.......+|..+++.+.+.
T Consensus 333 ~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 333 QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566654332 2334555667667788888777777554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=159.84 Aligned_cols=344 Identities=12% Similarity=0.072 Sum_probs=247.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHhhhhCC-chhhHHHHHHHHHHHHHHHhhhh--HH-HHHHHHHHHHhhhhh-hhhHH
Q 037413 98 TDIGNAGIASVSGSIFSRLVMGAVCDLLGP-RYGCAFLIMLSAPTVFSMVFVSS--AR-GYIAARFMIGFSLAT-FVSCQ 172 (530)
Q Consensus 98 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~-~~~~~ 172 (530)
+..+...++..+..++.+++.|.++|+.|+ |+.+-+...+..++.++..++++ ++ ..++..++..++... .....
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 456778899999999999999999999995 55556666666667777777654 44 445556677777665 55666
Q ss_pred HHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhc---------CCCCCCchhHHHHHHHHHHHHHHHHHH
Q 037413 173 YWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRA---------GATPFTAWRIAFFAPGCLHVIMGILVL 243 (530)
Q Consensus 173 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~---------~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (530)
+++.+..++++-++..++-.....+|..+.-++.-......+.. .......-|..+.+.++..++..+..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 99999999998899888887888888876654321111111000 001223679999999999999999999
Q ss_pred HhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 037413 244 TLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAAT 323 (530)
Q Consensus 244 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 323 (530)
+..++.++..... .+.-...-++.++.+++..+++.+..+.+..++..-...+.......|-...+|++..+..++...
T Consensus 218 ~~v~~~~~~~~~~-~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~ 296 (438)
T COG2270 218 LNVHDAEKISSPP-PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIA 296 (438)
T ss_pred hcccccccccccc-hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 8888765432000 000001112345667888888888888888888877777778888888888899999999999999
Q ss_pred HHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccc
Q 037413 324 FGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGI-IPF 402 (530)
Q Consensus 324 ~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ 402 (530)
..+.+++|+++.|++.||++.|+ .+.++.++..+..+...+.......++..++.|++.+......-++ ...
T Consensus 297 ~~vvA~lg~ii~g~Ld~rfg~k~-------vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~l 369 (438)
T COG2270 297 LSVVAALGAIIAGFLDERFGSKP-------VLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARL 369 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCce-------eehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 99999999999999999999884 4444444444444444444445556666678888888888888888 568
Q ss_pred cccccccchhhhhhhhhhHHHHhhhhhhhhcc--CCCcchhHHHHHHHH
Q 037413 403 ISRRSLGVISGLTGAGGNFGSGLTQLLFFTSS--RHSTATGISLMGIMI 449 (530)
Q Consensus 403 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 449 (530)
+|+++.++.+|+++..+...++++|++.+... ..+...++..+.++.
T Consensus 370 vp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll 418 (438)
T COG2270 370 VPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL 418 (438)
T ss_pred CCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 89999999999999999999999999988833 233344444333333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-15 Score=141.78 Aligned_cols=330 Identities=12% Similarity=0.020 Sum_probs=229.4
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhC-----Cch-hhHHHHHHHHHHHHHHHhh-----h--------
Q 037413 89 IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG-----PRY-GCAFLIMLSAPTVFSMVFV-----S-------- 149 (530)
Q Consensus 89 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~-~l~~~~~~~~~~~~~~~~~-----~-------- 149 (530)
+..|++++..-.+.+.++..+... ..+.+|+.+|+.+ ||. .+..|.++.+.+..+.+++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 567899999999998888877665 6999999999988 664 4556666666666665542 2
Q ss_pred h-HH--HHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 150 S-AR--GYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 150 ~-~~--~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
. .+ ...+.-.+.|+|.+. .++..++++|..|+++|+++.++...+.-+|.+++.++.+.+.+-+... .-.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~------rL~ 158 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE------RLI 158 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH------HHH
Confidence 2 22 233445677888775 6777899999999999999999999998899988887666554432100 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 226 IAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
..+...+++.++..++..+- .|.+.+ +..+..++++.++.+.+++...+|+...+.+..++....++.-...+-+|
T Consensus 159 ~v~~~~a~i~~~l~~ia~wg-~E~r~~---~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPy 234 (403)
T PF03209_consen 159 QVIQGVALIALLLNLIALWG-QEPRRS---RRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPY 234 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cccCCc---ccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCc
Confidence 23333333333333333332 221211 11223345566778888899999998888887777777777777778888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 037413 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILF 385 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (530)
--+.+|++..+...+....+.+..+|..+.|++..|-.+++ +...+.+....+....+++.....+.+.+....+++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~---~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~ 311 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK---RTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL 311 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88999999999999999999999999999998877422221 222233333333333334445666788888899999
Q ss_pred HHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 386 SITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 386 g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
|++.+.......+. .+...+++.|...|.....+.+...++..+.|.
T Consensus 312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988776555554 567778899999999999888877777777665
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-17 Score=154.93 Aligned_cols=261 Identities=11% Similarity=0.058 Sum_probs=178.5
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHH--hcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCC-chhhHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRD--NLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGP-RYGCAFLI 135 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~ 135 (530)
+.+|+.+.+..+..++.......+.+..-+..+ |.+.+.+..|++.++..++.+++++..|....|.+. |+.++.|.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 347888888888888888876665554434444 477888999999999999999999999999999996 88999999
Q ss_pred HHHHHHHHHH-Hhh---h-hHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 136 MLSAPTVFSM-VFV---S-SARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 136 ~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
++..++.++. ++. + ..+.++++|++.|+|.+......+|+++....++|.++++....+..+|..+||.+.+.+.
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 9999999987 332 3 6788999999999999999999999999998899999999998877888888887776665
Q ss_pred HHHHhcCC-----CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHh-hhchhHHHH
Q 037413 211 ELIRRAGA-----TPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYA-ITNYRTWIF 284 (530)
Q Consensus 211 ~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 284 (530)
.... .+. ....-+-.+-|+.+++.++..+..+++.+|.+....++..++.++++.+ .+..+.. +..+..+.+
T Consensus 190 ~Lg~-~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~vc 267 (488)
T KOG2325|consen 190 PLGE-KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSD-IEKVKKPKLDWVAVLVC 267 (488)
T ss_pred hhcC-CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccc-hhhhccCChhHHHHHHH
Confidence 5431 100 0011234566888888888888888888886654322211111001110 0111111 111122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 037413 285 VLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIA 321 (530)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (530)
.+..+.....+....+..+.+....++.+.+++....
T Consensus 268 ~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~ 304 (488)
T KOG2325|consen 268 IFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYN 304 (488)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhh
Confidence 4444444445555455555555566777665554433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-15 Score=143.59 Aligned_cols=360 Identities=12% Similarity=-0.006 Sum_probs=230.8
Q ss_pred hHHHHHHHHHHHHhhhhccccc-cchHHHHHhcC----CChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAA-PLVPIIRDNLN----LIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLI 135 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~ 135 (530)
.+.+..++..-+-..+..+.+. ++.-++..+++ +++++..-+.+.|.--.-...+++|+++||+ |+|+++..|.
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3445556666666666655543 44445666666 9999988888888877777999999999996 9999999999
Q ss_pred HHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhh-hhHHHHHhhhccCC--cchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 136 MLSAPTVFSMVFVS--SARGYIAARFMIGFSLATF-VSCQYWMSTMFNGK--IIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 136 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
++..+|.++.+.+. +...++++-++.++|.|.+ +....++.|.+|++ +|-..++++..+.++|+.++|++.+++.
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 99999999999884 7889999999999999974 77789999999864 4667889999999999999999988888
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccC-CCCCCCChh---------H----------
Q 037413 211 ELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKK-GDVPTDKFP---------K---------- 270 (530)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~---------~---------- 270 (530)
... ||...|.+.++-..+..+..++..+............. +........ .
T Consensus 180 ~~~---------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (498)
T COG3104 180 INY---------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNT 250 (498)
T ss_pred Hhh---------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 877 99999999887766655555444322111110000000 000000000 0
Q ss_pred ---------------HHHHhhh------c-hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHH
Q 037413 271 ---------------VLWYAIT------N-YRTWIFVL---LYGMSLGIELTIDNVIAEYFFDR-----FNLKLHTAGVI 320 (530)
Q Consensus 271 ---------------~~~~~~~------~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~ 320 (530)
.+.+.++ + ++.+..+. .....+..+....+.+..|..+. +|++ ...++.
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~f 329 (498)
T COG3104 251 FSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWF 329 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHH
Confidence 0000111 1 12222222 22222222322233344443332 2221 233455
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc-----C-----CcHHHHHHHHHHHHHHhh
Q 037413 321 AATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR-----A-----STLPLSILSMILFSITTQ 390 (530)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~g~~~~ 390 (530)
.++..+.-++..++..++..+.++++.......-..+++.+++++++++.. . .+.++.+...++.+++.-
T Consensus 330 QslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL 409 (498)
T COG3104 330 QSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGEL 409 (498)
T ss_pred HhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 666667777777777888888655532212222223344444443333221 1 256788888899999999
Q ss_pred hhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 391 AACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 391 ~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
+..|...+++. ..|+...+..+++.......|..++..+.+
T Consensus 410 ~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 410 FISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 99999998855 677777888888888777777777776655
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-19 Score=180.96 Aligned_cols=277 Identities=16% Similarity=0.168 Sum_probs=3.0
Q ss_pred HHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh
Q 037413 69 WLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV 148 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 148 (530)
++..++..+........+..++++|+++.++.|++.+.+-++..+..++..++.+|..|-+++-+|.++++++++++++=
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 34444445555566677889999999999999999999999999999999999999999999999999999999987641
Q ss_pred ----h----------------------------------------------hHHHHHHHHHHHHhhhhh-hhhHHHHHhh
Q 037413 149 ----S----------------------------------------------SARGYIAARFMIGFSLAT-FVSCQYWMST 177 (530)
Q Consensus 149 ----~----------------------------------------------~~~~l~~~r~l~G~~~~~-~~~~~~~i~~ 177 (530)
. -+..++++.++.|+|... ++.+.+|+-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 0 134578899999999996 8999999999
Q ss_pred hccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCC------------CC-chhHHHHHHHHHHHHHHHHHHH
Q 037413 178 MFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATP------------FT-AWRIAFFAPGCLHVIMGILVLT 244 (530)
Q Consensus 178 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~------------~~-~wr~~f~~~~~~~~~~~~~~~~ 244 (530)
..++++-+..+|+..+...+|-++|.++++.+.......+..+ +- .|-.-|++.+++.++.++..++
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999888876653222111 11 3667788888888888888888
Q ss_pred hccCCCCCCcc---------cccc---CC--C--------CCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037413 245 LGQDLPDGNLN---------TLQK---KG--D--------VPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVI 302 (530)
Q Consensus 245 ~~~~~p~~~~~---------~~~~---~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (530)
+-++.|+..+. +.++ +. + ...+++.+.++++++||.+....+...+......++.+++
T Consensus 249 FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~ 328 (539)
T PF03137_consen 249 FPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFL 328 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86666665110 0000 00 0 0113345667888999999999999988888888999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHHhhhhhhhHhhhhccCC
Q 037413 303 AEYFFDRFNLKLHTAGVIAATFGM-ANIFARPLGGLMSDMAARP 345 (530)
Q Consensus 303 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r 345 (530)
|.|++.+++.++.+++++.....+ +.++|.+++|++.+|++-+
T Consensus 329 pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~ 372 (539)
T PF03137_consen 329 PKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS 372 (539)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence 999999999999999987765444 6778999999999998654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-16 Score=153.62 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=224.3
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS 144 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 144 (530)
+.++.+..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|..|-+++-+|++++++++++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence 34445556666665566667788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh--------------------h---------------------------h----HH-HHHHHHHHHHhhhhh-hhhH
Q 037413 145 MVFV--------------------S---------------------------S----AR-GYIAARFMIGFSLAT-FVSC 171 (530)
Q Consensus 145 ~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~~~-~~~~ 171 (530)
+++- + . ++ .++++.++.|+|... ++.+
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 8761 0 0 23 567788999999996 8999
Q ss_pred HHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC-----CC-----CchhHHHHHHHHHHHHHHHH
Q 037413 172 QYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT-----PF-----TAWRIAFFAPGCLHVIMGIL 241 (530)
Q Consensus 172 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~-----~~-----~~wr~~f~~~~~~~~~~~~~ 241 (530)
.+|+-|...+++-...+|+..+...+|-++|.++++++.......+.. .. -.|..-|++.+.+.++.++.
T Consensus 259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888887776443111 00 13777889999999998888
Q ss_pred HHHhccCCCCCCcc----cc--ccCCC---CCC-------CChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 242 VLTLGQDLPDGNLN----TL--QKKGD---VPT-------DKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEY 305 (530)
Q Consensus 242 ~~~~~~~~p~~~~~----~~--~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (530)
.+++-++.|+..++ +. .+++. +.. +++.+.++++++||.+....+...+....+.++.+++|.|
T Consensus 339 ~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKy 418 (735)
T KOG3626|consen 339 LFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKY 418 (735)
T ss_pred HHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHH
Confidence 88887776654321 00 01110 011 1334567889999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-HHHhhhhhhhHhhhhccCC
Q 037413 306 FFDRFNLKLHTAGVIAATFGM-ANIFARPLGGLMSDMAARP 345 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r 345 (530)
+++++|.+...+..+....++ +..+|.+++|++..|+.-+
T Consensus 419 LE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 419 LETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 999999999999998865544 5677889999999998765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-15 Score=143.72 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHhcCCChh-hHHHHHHH----HHHHHHHhhhhhHHHhhhhCCchhhHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKT-DIGNAGIA----SVSGSIFSRLVMGAVCDLLGPRYGCAFLIML 137 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~s~----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 137 (530)
......++-.+...+.........+.....++.... ..+..... ..+...+..+..|.++||+|||..+.+..+.
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence 334444445555555444444555555555443222 22233333 3677788999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhh-h--hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 138 SAPTVFSMVFVSSARGYIAARFMIGFSLA-T--FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-~--~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
..+..+...+.. +|.++ +.|+..+ . +....++++|....++|....|+.......+..+++.+++.+....
T Consensus 102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~- 175 (463)
T KOG2816|consen 102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL- 175 (463)
T ss_pred HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-
Confidence 988888887765 44333 6666666 2 4567799999999999999999999999999999998888888776
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc-cc-------CCCCCCCChhHHHHHhhhchhHHHHHH
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTL-QK-------KGDVPTDKFPKVLWYAITNYRTWIFVL 286 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (530)
|.-.+|.+..+..++..+...+++||+-.++++.. .. .......+..+.....-.+|..+.+++
T Consensus 176 --------~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l 247 (463)
T KOG2816|consen 176 --------GIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLL 247 (463)
T ss_pred --------CchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHH
Confidence 88899999999999888888888877544332220 00 000011111222222223445555455
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhh-HhhhhccCCCCCcchhHHHHHHHHHHHH
Q 037413 287 LYGMSLGIELTIDN-VIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGG-LMSDMAARPFGMRGRLWNLYIVQTLGGI 364 (530)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~~~r~~~~~~~~~~~~~~~~~~~ 364 (530)
..++.......-.. .++.|+...++++..+.+.+.+.......++.++.. .+...++.| ..+..++..-.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-------~~i~lGl~~~~~ 320 (463)
T KOG2816|consen 248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-------RLISLGLLSEFL 320 (463)
T ss_pred HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHhhHHHHHHHH
Confidence 44443333221111 335567778999999999998888888888888877 666777776 366677777777
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 365 FCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
....+.+....|..+....+.++ .....+...+..+ .+.++++|.+.++...+..+.+.++|.+++.
T Consensus 321 ~~~~~af~~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 321 QLLLFAFATETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred HHHHHHHhccchhhhHHHHHHHh-hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 77788888888876666655444 4456666667655 7788999999999999999999999999766
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-14 Score=128.00 Aligned_cols=249 Identities=12% Similarity=0.109 Sum_probs=167.2
Q ss_pred ccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 037413 81 AAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFM 160 (530)
Q Consensus 81 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (530)
..+|..-.+-+++|.++.|++.+....+...++...+.|.++||+|||+..++-+++.+++++.- .+++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHH
Confidence 34455555667899999999999999999999999999999999999999999999999999754 45889999999999
Q ss_pred HHhhhhh-hhhHHH-HHhhhccCCcchhhHhHhhhhhh-hhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQY-WMSTMFNGKIIGLVNGTAAGWGN-MGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 161 ~G~~~~~-~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
.|++... +.+--+ ++.|.-.++.+....+-...-.. ++..+..++++.+.+...... + .|-..+|.....+.++
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~--~-~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF--G-FGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh--C-CCCcchHHHHHHHHHH
Confidence 9999996 655544 45665432222122222111111 334444455555555543211 0 1347888888887777
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCHHH
Q 037413 238 MGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDN-VIAEYFFDRFNLKLHT 316 (530)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 316 (530)
..+++....+|...+. .+..+..++..+.++.+.+||+++.+.+...+.-+..+.+.. |.|. +.. .+ ...-
T Consensus 208 ~~~~I~~~W~ENyg~~-----~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPa-L~~-~~-~~~P 279 (354)
T PF05631_consen 208 AAVLILKTWPENYGDT-----SSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPA-LDP-DD-EELP 279 (354)
T ss_pred HHHHHHhcccccCCCc-----ccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeece-ecC-CC-CCCC
Confidence 7776666555543321 111122234456667788899999999988887776665544 4454 331 11 2234
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhh
Q 037413 317 AGVIAATFGMANIFARPLGGLMSDM 341 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~dr 341 (530)
-|++++.+.++.++|..+..++..+
T Consensus 280 ~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 280 LGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6888888888888888888665543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=120.99 Aligned_cols=135 Identities=18% Similarity=0.209 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCC
Q 037413 104 GIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGK 182 (530)
Q Consensus 104 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~ 182 (530)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++.+++.+++.|++.+. .+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 4556778889999999999999999999999999999999999999999999999999999996 778889999999999
Q ss_pred cchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcc
Q 037413 183 IIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQ 247 (530)
Q Consensus 183 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 247 (530)
+|++.+++.+....+|..+++.+.+.+.+.. +|++.|++.+++.++..+..+++.|
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL---------GWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc---------chHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999998888776544 8999999998888877777666644
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=115.83 Aligned_cols=336 Identities=11% Similarity=0.024 Sum_probs=234.7
Q ss_pred ccccchHHHHHh-cCCChhhHH-HHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 81 AAAPLVPIIRDN-LNLIKTDIG-NAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 81 ~~~~~~~~~~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
.-+.+.|.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++.+.+-+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 334556666665 899988875 466677777888899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 159 FMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 159 ~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
++.|++.+.-.+-.+++-...++++-.++.+...+..-+|-.++.+++.++... +..+.+...++......+.
T Consensus 102 ~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-------~~~sy~~L~~isl~~~~~a 174 (412)
T PF01770_consen 102 FFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-------GGVSYFQLNYISLASVSLA 174 (412)
T ss_pred HHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHH
Confidence 999999999888889998888999889999998888777877777766666553 1225666666665444444
Q ss_pred HHHHHHhccCCCCCC---ccc----------ccc--CC-CC----------CCC-------ChhHHHHHhhhchhHHHHH
Q 037413 239 GILVLTLGQDLPDGN---LNT----------LQK--KG-DV----------PTD-------KFPKVLWYAITNYRTWIFV 285 (530)
Q Consensus 239 ~~~~~~~~~~~p~~~---~~~----------~~~--~~-~~----------~~~-------~~~~~~~~~~~~~~~~~~~ 285 (530)
.+ +.+++|..+++. ++. .++ +. +. .+. ..++.+++..++|.++...
T Consensus 175 ~~-~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WS 253 (412)
T PF01770_consen 175 LL-IALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWS 253 (412)
T ss_pred HH-HHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 44 434455543321 000 000 00 00 000 1234566777889888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHH
Q 037413 286 LLYGMSLGIELTIDNVIAEYFFDR--FNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGG 363 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 363 (530)
+-..+..+++..+.++......+. .+-...-.|..-+...+.+.++.+..|++..++.+. ....+.+..++.+
T Consensus 254 lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-----~~l~l~~~S~l~a 328 (412)
T PF01770_consen 254 LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-----GELALGVFSLLQA 328 (412)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-----HHHHHHHHHHHHH
Confidence 877777777777776666555543 233444566777777778888888888874444331 2234445555666
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 364 IFCICLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
..++++...++.|..++..+++...+....+....- ......+.-|..+|+.++++.+-..+-..+
T Consensus 329 ~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT~i 395 (412)
T PF01770_consen 329 GLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILTLI 395 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheEEE
Confidence 667777888899999999888888777766665544 446677888888888887776655544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=142.39 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhcc
Q 037413 102 NAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFN 180 (530)
Q Consensus 102 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~ 180 (530)
+...+..++.+++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++ ++...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 335667788999999999999999999999999999999999999998888888889998888775 7788899999999
Q ss_pred CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 181 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
.++|++++|+..+...+|.+++|++++.+... +...+|++.+++.++.+++.+++
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----------~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI----------TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888877653 45678888877777666655544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=136.38 Aligned_cols=152 Identities=9% Similarity=0.077 Sum_probs=129.8
Q ss_pred hcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhh
Q 037413 92 NLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVS 170 (530)
Q Consensus 92 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~ 170 (530)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.+++++.+.+++.+++.|++.+. .+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999999999999999999999999999999999998886 566
Q ss_pred HHHHHhhhccCCcchhhHhH-hhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 037413 171 CQYWMSTMFNGKIIGLVNGT-AAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDL 249 (530)
Q Consensus 171 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 249 (530)
...++.+.+|++.|+...+. ++....+|..+++.+.+.+.+.. ||+..|.+.+++.++..++.++..++.
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---------G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---------GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---------CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77899999999888877655 55667789999998888888776 999999999988887777777766654
Q ss_pred CCC
Q 037413 250 PDG 252 (530)
Q Consensus 250 p~~ 252 (530)
|++
T Consensus 407 ~~~ 409 (420)
T PRK09528 407 REL 409 (420)
T ss_pred chh
Confidence 443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=135.27 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=132.8
Q ss_pred cchHHHHHhcCCC--------hhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh----hH
Q 037413 84 PLVPIIRDNLNLI--------KTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS----SA 151 (530)
Q Consensus 84 ~~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~ 151 (530)
...+...++.|.+ .++.+...++..++..++.++.|+++||+|+|+++.++.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 3345555566644 36678999999999999999999999999999999999999988877766632 34
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhh-hhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHH
Q 037413 152 RGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAA-GWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFF 229 (530)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (530)
+.+++.+++.|++.+. .+....++.|++|+++|++++|+.+ ...++|..+|+.+++.+.+..... +..||++.|.
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~---~~~~~~~~f~ 385 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY---GTFDWQTMWL 385 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc---cCCchHHHHH
Confidence 6778889999999986 6777899999999999999999997 567899999999999888765210 1127999999
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 037413 230 APGCLHVIMGILVLTLGQDL 249 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~ 249 (530)
+.+++.++.+++.+++.+|+
T Consensus 386 ~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 99999998888888887764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=128.60 Aligned_cols=333 Identities=15% Similarity=0.115 Sum_probs=196.6
Q ss_pred ccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh---C--CchhhHHHHHHHHHHHHHHHhh----hhHHH
Q 037413 83 APLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL---G--PRYGCAFLIMLSAPTVFSMVFV----SSARG 153 (530)
Q Consensus 83 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~----~~~~~ 153 (530)
....+.+++++|+++++...+.+...+... ..++.|.++|-+ | ||+-++++.++.+++.+..+.. .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 355778999999999999999999988887 688999999997 3 5566677777776656555543 35666
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhcc--CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMFN--GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFA 230 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (530)
..+.-++..+|... ...+-+++.|... +++||...+.......+|.+++..+++.+.+.. ++|+.|.+
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---------~~~~~f~i 159 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---------GPQGVFLI 159 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---------CCeEEehH
Confidence 66667777777774 5666788888774 334677788887788888888887777766554 88999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccccccCCCCC-------CCChhHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHHH
Q 037413 231 PGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVP-------TDKFPKVLWYAITNYRTWIFVL-LYGMSLGIELTIDNVI 302 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 302 (530)
.+++.++..+..+++.+|.++.++.+.....++. .++....+++.++.|.+|...+ ..++............
T Consensus 160 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ 239 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASS 239 (433)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence 9888888877777776653222211111000110 1122345667778888887666 2222211111000000
Q ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHH---Hhhc-----
Q 037413 303 AEYFFDRFN---LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCI---CLGR----- 371 (530)
Q Consensus 303 ~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~----- 371 (530)
-.+..+..+ +++...+.+..+..++.++|..+.. ++.++..+|. +.....++..+..+ ++..
T Consensus 240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~----~~~~~~~~R~---~~~~t~~~~~~~~l~~~~lv~~~n~~ 312 (433)
T PF03092_consen 240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYR----KYFSNWSWRR---IFVVTTLVSVLASLFDLLLVTRWNLD 312 (433)
T ss_pred EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCHHH---HHHHHHHHHHHHhcccEEEEEEEeee
Confidence 001112344 7887777766555555555554444 4433332222 22232222222211 1110
Q ss_pred --CCcHHHHHHHHHHHHHHhhhh-hccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 372 --ASTLPLSILSMILFSITTQAA-CGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 372 --~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.++.+....--++..+..... .|......+..|+..-|+.+++..++.++|..++..+...
T Consensus 313 ~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~ 376 (433)
T PF03092_consen 313 LGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAF 376 (433)
T ss_pred eCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011121122222233323233 3333333567788899999999999999988777776443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=129.52 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=124.0
Q ss_pred chHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 037413 85 LVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGF 163 (530)
Q Consensus 85 ~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (530)
..|. +++++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.+...+......+.++++.+++.+++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3454 567899999999998888888888899999999999999998888776666655555667788888889999988
Q ss_pred hhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 037413 164 SLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILV 242 (530)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (530)
+.+. ......+..|.+|+ +|++++++++...++|..+++.+++.+.+.. ||+..|++.+++.++..++.
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~---------g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW---------NYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 8885 56666788898875 6999999998889999999999999988876 99999998887777765555
Q ss_pred HHh
Q 037413 243 LTL 245 (530)
Q Consensus 243 ~~~ 245 (530)
++.
T Consensus 388 ~~~ 390 (393)
T PRK15011 388 LRI 390 (393)
T ss_pred Hhh
Confidence 543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=132.07 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=127.3
Q ss_pred cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 037413 84 PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGF 163 (530)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (530)
...|.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|+
T Consensus 241 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL 320 (406)
T ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34677777889999999999999999999999999999999999999988877777777777777888888888888898
Q ss_pred hhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 037413 164 SLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILV 242 (530)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (530)
+.+. .+...+++.|.+|+++|++.+|+.+....+|..+++.+++.+.+.. .+|...+++.....++..++.
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--------~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 321 FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--------RSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--------CchHHHHHHHHHHHHHHHHHH
Confidence 8775 6777889999999999999999999999999999998888776532 156677777766665555555
Q ss_pred HHh
Q 037413 243 LTL 245 (530)
Q Consensus 243 ~~~ 245 (530)
++.
T Consensus 393 ~~~ 395 (406)
T PRK11551 393 LLL 395 (406)
T ss_pred HHH
Confidence 544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=130.51 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=117.9
Q ss_pred ccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH---HHhhhhHHHH
Q 037413 79 TFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS---MVFVSSARGY 154 (530)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l 154 (530)
.+......|. +++++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+. ...+++...+
T Consensus 266 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 266 YYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3333345565 45678999888888888889999999999999999999999988887654433322 2234567888
Q ss_pred HHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 037413 155 IAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGC 233 (530)
Q Consensus 155 ~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~ 233 (530)
++++++.|++.+. ......++.|.+|++.|+.++++......++..+++.+.+.+.+.. + +|+.++++..+
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~---~-----~~~~~~~~~~~ 417 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST---Q-----NLMMPAYYLMV 417 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C-----CchHHHHHHHH
Confidence 8899999988775 5566688889999999999999754444555566666666555432 1 57888777766
Q ss_pred HHHHHHHHHHHhccCCCCC
Q 037413 234 LHVIMGILVLTLGQDLPDG 252 (530)
Q Consensus 234 ~~~~~~~~~~~~~~~~p~~ 252 (530)
.+++..+..+ +.||+|..
T Consensus 418 ~~~i~~~~~~-~~pes~~~ 435 (490)
T PRK10642 418 VAVIGLITGV-TMKETANR 435 (490)
T ss_pred HHHHHHHHHH-HhccccCC
Confidence 6666555544 44666553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=130.40 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=123.3
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHH
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSA--RGYIAARFMIG 162 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 162 (530)
..+.+.++++.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999999999999999999888887776643 33456678888
Q ss_pred hhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 163 FSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
++.+. .+....++.|.+|+++|++++|+......+|..+++.+.+.+.+.. ||++.|++.+++.++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---------GFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---------chhhHHHHHHHHHHHh
Confidence 88885 5666788999999999999999999999999999998888887765 9999999987766553
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=128.48 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=127.1
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 164 (530)
..+.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++
T Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455565 3456677888889999999999999999999999999999898888888888888888999999999
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (530)
.+. ++.....+.+.+|+++|+++.++++....+|..+++.+.+.+.+.. ||++.|++.+++.++..++.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---------GYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CHHHHHHHHHHHHHHHHHHHH
Confidence 985 6666777889999999999999999999999988888888877765 899999999888887766666
Q ss_pred HhccC
Q 037413 244 TLGQD 248 (530)
Q Consensus 244 ~~~~~ 248 (530)
++.++
T Consensus 387 ~~~~~ 391 (399)
T PRK05122 387 LLYRR 391 (399)
T ss_pred Hhccc
Confidence 65443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=127.12 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=137.9
Q ss_pred ccchHHHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 037413 83 APLVPIIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMI 161 (530)
Q Consensus 83 ~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 161 (530)
....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.++++.++.
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 3445665555 899999999999999999999999999999998888888888888888888888888888888889999
Q ss_pred Hhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 037413 162 GFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240 (530)
Q Consensus 162 G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 240 (530)
|++.+. .+...+++.+..|++.||+++|++.....+|..+|+.+.+.+.+.. |++..+++.++..++.++
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~---------g~~~~~~~~~~~~~~~~~ 393 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM---------TPVASASASGFGLLIIGV 393 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---------chhhHHHHHHHHHHHHHH
Confidence 998885 4566788999999999999999999999999999999999998877 889999988888887777
Q ss_pred HHHHhccCCCCC
Q 037413 241 LVLTLGQDLPDG 252 (530)
Q Consensus 241 ~~~~~~~~~p~~ 252 (530)
+.+...++.++.
T Consensus 394 ~~~~~~~~~~~~ 405 (417)
T PRK10489 394 LLLLVLGELRRF 405 (417)
T ss_pred HHHHhccccccc
Confidence 777776655443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=125.41 Aligned_cols=157 Identities=20% Similarity=0.306 Sum_probs=137.5
Q ss_pred ccccccchHHHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCch-hhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 037413 79 TFAAAPLVPIIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRY-GCAFLIMLSAPTVFSMVFVSSARGYIA 156 (530)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (530)
........|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+.++..++.++..+.++.+.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 270 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 33344555665555 4999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 037413 157 ARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235 (530)
Q Consensus 157 ~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (530)
..++.|++.+. .+....++.|..|+++|++.+++.+...++|..+++.+.+.+.+.. +|++.+++.+++.
T Consensus 271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---------~~~~~~~~~~~~~ 341 (352)
T cd06174 271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---------GYGGVFLILAALA 341 (352)
T ss_pred HHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------CcchHHHHHHHHH
Confidence 99999999996 7888899999999999999999999999999999998888776544 9999999999988
Q ss_pred HHHHHHHHH
Q 037413 236 VIMGILVLT 244 (530)
Q Consensus 236 ~~~~~~~~~ 244 (530)
++..+..++
T Consensus 342 ~i~~i~~~~ 350 (352)
T cd06174 342 LLAALLLLL 350 (352)
T ss_pred HHHHHHhee
Confidence 877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=124.84 Aligned_cols=167 Identities=13% Similarity=-0.041 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHH
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~ 358 (530)
+.++.+.+..++..........++|.|+++.+|++..+.++..+...++.+++.++.|+++||+|||+ .+.++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-------~~~~~ 79 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR-------YMLLA 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch-------hHHHH
Confidence 45666777777777777777889999999989999999999999999999999999999999999984 55555
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhccCCC
Q 037413 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHS 437 (530)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 437 (530)
..+..+..+++.+.++.+..++...+.+.+.+...+...++. +..++++|+++.|+.+...++|.+++|.+.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g 159 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQS 159 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556555566666666555555555655555555566664 5667888999999999999999999999987744455
Q ss_pred cchhHHHHHHHHHHH
Q 037413 438 TATGISLMGIMIVCC 452 (530)
Q Consensus 438 ~~~~~~~~~~~~~~~ 452 (530)
++..+...+++.++.
T Consensus 160 ~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 160 INLPFWLAAICSAFP 174 (395)
T ss_pred cCcHHHHHHHHHHHH
Confidence 666666554444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=124.96 Aligned_cols=152 Identities=10% Similarity=0.032 Sum_probs=123.1
Q ss_pred hHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhh
Q 037413 86 VPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF-SMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~ 164 (530)
.|.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.. .+..+..++.. +....++.+.++++.++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 4456677899999999999999999999999999999999988654 44444444443 345567888888899999998
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (530)
.+. .+.....+.+..| ++|++++|++.....+|..+|+++++.+.+.. |++..|++.+.+.++.++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~---------g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL---------GLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ChhHHHHHHHHHHHHHHHHHH
Confidence 875 4555677777766 58899999999999999999999999888776 999999999998888777777
Q ss_pred HhccC
Q 037413 244 TLGQD 248 (530)
Q Consensus 244 ~~~~~ 248 (530)
+..+.
T Consensus 378 ~~~~~ 382 (390)
T PRK03545 378 LIFRR 382 (390)
T ss_pred HHccc
Confidence 77654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=124.97 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=128.2
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 164 (530)
..+.+.++.+.+. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++
T Consensus 238 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 238 FVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred HHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444445666553 45667778888899999999999999999999999999999988888888888888999999999
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (530)
.+. .+.....+.+.+|+++|++++|+++....+|..+++.+.+.+.+.. ||++.|.+.+++.++..++.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---------GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CchHHHHHHHHHHHHHHHHHH
Confidence 885 6777788899999999999999999999999999999999888876 999999999988877777666
Q ss_pred Hhc
Q 037413 244 TLG 246 (530)
Q Consensus 244 ~~~ 246 (530)
+..
T Consensus 387 ~~~ 389 (392)
T PRK12382 387 LSF 389 (392)
T ss_pred hhc
Confidence 553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=126.06 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=127.8
Q ss_pred ccchHHHHHhcCCChh----hHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 83 APLVPIIRDNLNLIKT----DIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 83 ~~~~~~~~~~~~~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
.+..+.+..+.+.+.. ..+.+.++..++..++.++.|++.||+|||+.+..+.++.+++.+...+.++.+.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444544444333333 245566777788889999999999999999999999998888888888888899999999
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
++.|++.+. .+....++.+..++++||+.+++......+|..+|+.+++.+.+.. ||++.|++.+++.++
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~---------g~~~~f~~~~~~~l~ 389 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY---------GFRAVFLVTAGVVLF 389 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc---------chhHHHHHHHHHHHH
Confidence 999999996 6777788888899999999999999999999999999888887665 899999999998888
Q ss_pred HHHHHHHhccC
Q 037413 238 MGILVLTLGQD 248 (530)
Q Consensus 238 ~~~~~~~~~~~ 248 (530)
..++.++..++
T Consensus 390 ~~~~~~~~~~~ 400 (408)
T PRK09874 390 NAVYSWNSLRR 400 (408)
T ss_pred HHHHHHHHHHH
Confidence 77777665443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-12 Score=122.70 Aligned_cols=151 Identities=9% Similarity=-0.063 Sum_probs=129.6
Q ss_pred ccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 79 TFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
...+....|.+.+++|.++.++|++.+...++..+..++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+
T Consensus 221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q 300 (382)
T TIGR00902 221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ 300 (382)
T ss_pred HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 33333455665577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhh-hhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAA-GWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHV 236 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~ 236 (530)
++.|++.+. .+....++.+. |+++|+...++++ ...++|..+++.+++.+.+.. |+ ..|++.+.+++
T Consensus 301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------g~-~~~~~~~~~~~ 369 (382)
T TIGR00902 301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------GA-GTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cH-HHHHHHHHHHH
Confidence 999999996 78888999988 8889999999986 466799999999999998876 75 66777777776
Q ss_pred HHHH
Q 037413 237 IMGI 240 (530)
Q Consensus 237 ~~~~ 240 (530)
+..+
T Consensus 370 ~~~~ 373 (382)
T TIGR00902 370 AAFF 373 (382)
T ss_pred HHHH
Confidence 5443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=120.99 Aligned_cols=388 Identities=14% Similarity=0.052 Sum_probs=231.7
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCc-hhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPR-YGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~l~~~~~~~~~~~~ 143 (530)
+..+=+.++..+.....+.|+++.+.+++|+++.+.|.+...-.+..+++.+++|+++|||-+| +.++.+++......+
T Consensus 13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3333344444555566677888889999999999999999999999999999999999999855 555556666666666
Q ss_pred HHHhhh----hHHH----------HHHHHHHHHhhhhh-hhhHH----------HHH------------hhhccCCc---
Q 037413 144 SMVFVS----SARG----------YIAARFMIGFSLAT-FVSCQ----------YWM------------STMFNGKI--- 183 (530)
Q Consensus 144 ~~~~~~----~~~~----------l~~~r~l~G~~~~~-~~~~~----------~~i------------~~~~~~~~--- 183 (530)
+..+.+ +... .-..|..-|++... ...+. ..- +++.+.+.
T Consensus 93 ll~fv~P~~~~~i~~~~~~c~~~~~~~~~~~~~v~l~~~~~s~~~~~~s~pa~~~~~~Eap~~~~~~~~s~~~~~~d~~~ 172 (618)
T KOG3762|consen 93 LLVFVPPVDKNRIHEVFFCCDSSGLDSGRALRGVTLPVNINSCQEGASSRPAKCALEVEAPGFRNPIEESDFLTFEDEHA 172 (618)
T ss_pred heeeccCcccCcccccccccccccCchhhhccCccceechhhhhccccCCcHHHHHhccCccccCCcccchhhhhhhhhh
Confidence 666542 2221 33344444444331 11000 000 00000000
Q ss_pred -------------------------------c----------------------------------------hhhHhHhh
Q 037413 184 -------------------------------I----------------------------------------GLVNGTAA 192 (530)
Q Consensus 184 -------------------------------r----------------------------------------~~~~~~~~ 192 (530)
| ....+...
T Consensus 173 ~i~ps~~~~v~s~~~~~~~~~~s~~~~~~~~rq~~v~~~~v~Ll~~~~~~ef~s~c~~~~~d~~~~~~~~e~~~~~~~~~ 252 (618)
T KOG3762|consen 173 AIAPSVITFVRSYDQALLEPVVSPLFSHRVYRQPEVQKAHVCLLTPIKIGEFFSNCAGTLADAAVFDLLLEAAAITGSLR 252 (618)
T ss_pred ccchhhhcccccCCHHhhccccCcccccchhcccccccceeEEeecccccccccCccccchHHHHHHHHhhhhhhhceee
Confidence 0 00001111
Q ss_pred hhhhhhhhhHHhHHH-HHHHHHHhc------CC--CCCCchhHHHHHHHHHHHHHHHHHHH--hccC-CCCCCcc-----
Q 037413 193 GWGNMGGGITQLLTP-FIYELIRRA------GA--TPFTAWRIAFFAPGCLHVIMGILVLT--LGQD-LPDGNLN----- 255 (530)
Q Consensus 193 ~~~~~G~~~~~~~~~-~l~~~~~~~------~~--~~~~~wr~~f~~~~~~~~~~~~~~~~--~~~~-~p~~~~~----- 255 (530)
.+...|..+..+... .-.++.... +. .+..+|+..+.+.+.++.-..+...- +.-+ .+...-+
T Consensus 253 ~~~~~gW~l~~~~~~~i~~d~~~sf~d~~c~~~~~~e~~n~~~~~~v~gv~~~~A~~~~~~~~~~~~~~~~~v~~~~~~~ 332 (618)
T KOG3762|consen 253 YGASLGWGLAMFLCGQIALDYTYSFSDAPCKGDLGDEEKNYYLCQRVCGVLGTGATGSAADCFFKYDMGHRLVVDSYGAE 332 (618)
T ss_pred ccchhHHHHHHHHHhhhhhhhhhhhhcCCCccccchhhhchhhhhhHHHHHHHHHHHHhcCcEEEeccccccccccccHH
Confidence 222334433333222 111221110 11 12347888888887666544443322 2112 1111000
Q ss_pred --------------ccc-cCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 037413 256 --------------TLQ-KKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVI 320 (530)
Q Consensus 256 --------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (530)
..+ ...+...+..+....+++.++...++.+...+.......+.+++=-++++ .+..+..-|..
T Consensus 333 v~~~l~~~~~~~f~~s~~~~~~~~~~~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~ 411 (618)
T KOG3762|consen 333 VESMLALAASIAFPSSKLGQGEPHSSSVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVV 411 (618)
T ss_pred HHHHHHHHHHhhccccccCCCCchHHHHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeeh
Confidence 000 00011112234444566777776555444444433444444455445555 56666666677
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc
Q 037413 321 AATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII 400 (530)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 400 (530)
......+.++.-++.+++.+|+|+-+ ++..++.+..+=++.+....++|..+..=++-|+..+..+....+++
T Consensus 412 ~a~~~~gEI~~~ffs~klI~kiGHv~-------v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~ 484 (618)
T KOG3762|consen 412 SALCHAGEILFYFFSFKLIEKIGHVN-------VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYA 484 (618)
T ss_pred hhhhccchHHHHHHHHHHHHHhcccc-------eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888899999999999874 66677777777777888888999888888999999999999888887
Q ss_pred c-ccccccccchhhhhhhhhh-HHHHhhhhhhhh-ccCCCcchhHHHHHHHHHHHHHHHHHhh
Q 037413 401 P-FISRRSLGVISGLTGAGGN-FGSGLTQLLFFT-SSRHSTATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 401 ~-~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
+ ..||+.+.++.|+...... +|-.+|.+++|. ...++..+.+...++.+++..+..+.+.
T Consensus 485 s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 485 SHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 6688899999999876654 566777777776 4567777888877777766665554444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=127.32 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
++.+++..+..+..........|. +++++|++..+.++..+...++..++.+++|+++||+|||+.+.+...+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 333444444444444444455664 5678999999999999999999999999999999999999887765544444332
Q ss_pred H--HHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhh-hhhhHHhHHHHHHHH-HHhcCC
Q 037413 144 S--MVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNM-GGGITQLLTPFIYEL-IRRAGA 218 (530)
Q Consensus 144 ~--~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~-~~~~~~ 218 (530)
+ ....++.+.+.+.+++.|++..+ .........|.+|+++||.+.|+.+...++ |..+++.+.+.+.+. ......
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 2 23345677777888888865443 333346667999999999999999888876 667787777777661 000000
Q ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 219 --TPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 219 --~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
....+|+..|++.++..++..+..+++
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 002379999999877777665555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=120.36 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=123.3
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 037413 88 IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT 167 (530)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 167 (530)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999988888777888899999999999999999888877776666666778888888899999999885
Q ss_pred -hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 037413 168 -FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLT 244 (530)
Q Consensus 168 -~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 244 (530)
.+....++.|..|+ +++.+++++....++|..+++.+++.+.+.. ||+..|++.+++.++..++..+
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---------SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHHHhe
Confidence 66777888888875 5679999999999999999999888887766 8999999998877666655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-12 Score=115.74 Aligned_cols=171 Identities=14% Similarity=0.159 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHH
Q 037413 281 TWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360 (530)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~ 360 (530)
++...+.+...+..--.+..-.| ++.+..++|..+.|.+.+.+.+...++.++.|.++||.+.|. .+..+++
T Consensus 31 f~~~fiGYa~fYl~RknF~~a~p-~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-------fm~~gLi 102 (448)
T COG2271 31 FLSIFIGYAAFYLTRKNFNLAMP-ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-------FMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHhHhhccH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-------eehHHHH
Confidence 34444444444554445554455 455667899999999999999999999999999999999984 8888999
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhh--hh-ccCC
Q 037413 361 LGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLF--FT-SSRH 436 (530)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~-~~~~ 436 (530)
+.++..+++.+.++.+.+.+...+-|.+.+...|++...+ .-.++++||+..++.|+..++|+.+.|.+. +. .++.
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888774 577888999999999999999998888887 55 5566
Q ss_pred CcchhHHHHHHHHHHHHHHHHHh
Q 037413 437 STATGISLMGIMIVCCTFPVALV 459 (530)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~ 459 (530)
++..++++-+++.++..++.+..
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777776666554433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=127.31 Aligned_cols=175 Identities=17% Similarity=0.025 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
.+...++..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+.++.++.+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33334444444444344445567788889999998889999999999999999999999999999999999888888877
Q ss_pred HHHhh-----h------hHHHHHHHHHHHHhhhh-h-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 144 SMVFV-----S------SARGYIAARFMIGFSLA-T-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 144 ~~~~~-----~------~~~~l~~~r~l~G~~~~-~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
+.++. + +...+.... +.+.+.+ . .+....++.|.+|+++|++++++.....++|..+++.+.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 365 VLGILGASFVTGSSKSSGNVAIVFIL-LFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred HHHHHhhcccCCcccchhHHHHHHHH-HHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76621 1 222233333 3333333 3 4555677899999999999999999999999999888888777
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccC
Q 037413 211 ELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQD 248 (530)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (530)
+.. +|++.|++.++++++.+++.+++.||
T Consensus 444 ~~~---------~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 444 ESI---------GVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred Hhc---------CccceehhHHHHHHHHHHHHheeccc
Confidence 655 89999999998888888777776555
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=120.71 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=126.1
Q ss_pred ccccchHHH-HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 037413 81 AAAPLVPII-RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARF 159 (530)
Q Consensus 81 ~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 159 (530)
.+....|.+ ++++|++..+.+++.+.+.++..++.++.|++.||+++|+.+.....+.++..++....++.+.+.+..+
T Consensus 223 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (394)
T PRK03699 223 TFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL 302 (394)
T ss_pred HHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 333455654 4778999999999999999999999999999999999999999888887777777777778877777888
Q ss_pred HHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 160 MIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
+.|++.+. ++....+..+..+ +++++..+.......+|..++|.+.+.+.+.. ||+..+++.+++.++.
T Consensus 303 ~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---------g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 303 GLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF---------GLQAALLTANGLYAVV 372 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---------CchhhhhhhHHHHHHH
Confidence 88988775 6666677777665 45677888888888899999999888888776 9999999888887776
Q ss_pred HHHHHHh
Q 037413 239 GILVLTL 245 (530)
Q Consensus 239 ~~~~~~~ 245 (530)
.+.....
T Consensus 373 ~~~~~~~ 379 (394)
T PRK03699 373 FVMCILL 379 (394)
T ss_pred HHHHHHH
Confidence 6554444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=119.56 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=123.1
Q ss_pred hhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhH-HHHHHHHHHHHHHHh-----h
Q 037413 75 CFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCA-FLIMLSAPTVFSMVF-----V 148 (530)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~ 148 (530)
.....+......|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .
T Consensus 234 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 313 (402)
T TIGR00897 234 NTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG 313 (402)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3333344445667777889999999999999999999999999999999999888764 333334443333322 2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHH
Q 037413 149 SSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAF 228 (530)
Q Consensus 149 ~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f 228 (530)
++++.+++..++.|++.+...+....+.+..| ++|++++|+.+....+|..++|.+++.+.+.. ||+..|
T Consensus 314 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---------g~~~~~ 383 (402)
T TIGR00897 314 HSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF---------GAIGVV 383 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------chHHHH
Confidence 46777788889999888864444556667654 58999999999999999999998888888765 999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037413 229 FAPGCLHVIMGILVLTL 245 (530)
Q Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (530)
++.+++.++..++.+|.
T Consensus 384 ~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 384 WIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99998887777776664
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=128.02 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=125.8
Q ss_pred HHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh--CCchhhHH--HHHHHHHHHHHHH
Q 037413 71 SFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL--GPRYGCAF--LIMLSAPTVFSMV 146 (530)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~ 146 (530)
..++...........+|.+.+++|.+..+.+++.++..++..++.++.|++.||. ++|+...+ +.++.+++.++..
T Consensus 249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~ 328 (455)
T TIGR00892 249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA 328 (455)
T ss_pred HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444455666678999999999999999999999999999999984 33433333 3444455556667
Q ss_pred hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 147 FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
+.++++.+++.+++.|++.+. .+...+++.|.+|++++++.+|+++...++|..+|+.+++.+.+... +|+
T Consensus 329 ~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--------~~~ 400 (455)
T TIGR00892 329 LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--------NYK 400 (455)
T ss_pred HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--------Ccc
Confidence 788999999999999999886 67778899999999999999999999999999999988887776541 599
Q ss_pred HHHHHHHHHHHHHHH
Q 037413 226 IAFFAPGCLHVIMGI 240 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~ 240 (530)
+.|++.+++.++..+
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 999998887665544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=118.75 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=120.4
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 164 (530)
.+|.+.++.|.++++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + ...++...++.|++
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~ 298 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence 46767677899999999999999999999999999999999999999988888877665543 2 23444567788887
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (530)
... .+.....+.|..|+++++...+......++|..+||.+++.+.+.. +|++.|.+.+.+.++..+..+
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---------g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---------SDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CccHHHHHHHHHHHHHHHHHH
Confidence 665 7888888899998888888888887888999999999999888876 899999998887776554443
Q ss_pred H
Q 037413 244 T 244 (530)
Q Consensus 244 ~ 244 (530)
.
T Consensus 370 ~ 370 (381)
T PRK03633 370 R 370 (381)
T ss_pred h
Confidence 3
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=123.91 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=114.8
Q ss_pred cccchHHHH-HhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 037413 82 AAPLVPIIR-DNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV--SSARGYIAAR 158 (530)
Q Consensus 82 ~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r 158 (530)
....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+++.++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 334566655 6899999999999999999999999999999999999999988877776665544332 3444454555
Q ss_pred HHHHhhhh-hhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 159 FMIGFSLA-TFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 159 ~l~G~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
++.+.... ..+....++.|.+|+++|++++++......+|..+|+.+++.+.+.. ||+..+.+.+....+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~---------g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL---------DLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC---------ChHHHHHHHHHHHHH
Confidence 55444333 34556678899999999999999999999999999998888887655 899888766654444
Q ss_pred HHH
Q 037413 238 MGI 240 (530)
Q Consensus 238 ~~~ 240 (530)
.++
T Consensus 445 ~~~ 447 (496)
T PRK03893 445 VVI 447 (496)
T ss_pred HHH
Confidence 333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=121.50 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=116.7
Q ss_pred HHHHHHhhhhccccccchHHH-HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHH--HHH
Q 037413 69 WLSFFTCFVSTFAAAPLVPII-RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTV--FSM 145 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~ 145 (530)
....+.............|.+ ++++|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+..+..+.. +..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 225 LGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444445554 47889999999999999999999999999999999999998776555444333 222
Q ss_pred Hh--hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHh-hhhhhhhhhhHHhHHHHHHHHHHhcCCCCC
Q 037413 146 VF--VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTA-AGWGNMGGGITQLLTPFIYELIRRAGATPF 221 (530)
Q Consensus 146 ~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 221 (530)
.+ .++.+.+++..++.|++.+. .+....++.|.+|+++|++++++. +....+|..++|.+++.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~-------- 376 (394)
T TIGR00883 305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT-------- 376 (394)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc--------
Confidence 22 25677777888899998885 778889999999999999999984 4455677878888888877765
Q ss_pred Cc-hhHHHHHHHHHHH
Q 037413 222 TA-WRIAFFAPGCLHV 236 (530)
Q Consensus 222 ~~-wr~~f~~~~~~~~ 236 (530)
| |++.++...+..+
T Consensus 377 -g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 377 -GDWYAIGYYLAALAL 391 (394)
T ss_pred -CcchhHHHHHHHHHH
Confidence 5 8887777655433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-11 Score=116.76 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=122.7
Q ss_pred ccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh-hHHHHHHH
Q 037413 79 TFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS-SARGYIAA 157 (530)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~ 157 (530)
........|.+.+++|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+.++..+.+++.++....+ +...+ .
T Consensus 221 ~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~ 298 (393)
T PRK09705 221 YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--W 298 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--H
Confidence 33344455666667899999999999999999999999999999999999999998888777766554322 22222 2
Q ss_pred HHHHHhhhhh-hhhHHHHHhhhcc-CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 037413 158 RFMIGFSLAT-FVSCQYWMSTMFN-GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235 (530)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (530)
-++.|++.+. ++.......+.++ ++++++.+++.+....++..++|.+.+.+.+... +|...|++.++.+
T Consensus 299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--------~~~~~~~~~~~~~ 370 (393)
T PRK09705 299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--------NYLMDWAFHALCV 370 (393)
T ss_pred HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CchHHHHHHHHHH
Confidence 3456888775 6666666666664 5688999999999999999999998888887651 4888888888777
Q ss_pred HHHHHHHHHhccCCC
Q 037413 236 VIMGILVLTLGQDLP 250 (530)
Q Consensus 236 ~~~~~~~~~~~~~~p 250 (530)
++..+..+.+.||++
T Consensus 371 ~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 371 VGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHhccccc
Confidence 777666666655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=120.76 Aligned_cols=168 Identities=18% Similarity=0.128 Sum_probs=116.8
Q ss_pred HHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchh--hH------HHHHHH
Q 037413 68 SWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYG--CA------FLIMLS 138 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--l~------~~~~~~ 138 (530)
..+..+.............|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+. .. .+.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 333344444444444444554 556789999999999999999999999999999999999861 11 111111
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA 218 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 218 (530)
++........++.+..+...++.+.+.+..+....++.|.+|+++|++++++.+...++|..+++.+.+.+.+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~----- 374 (399)
T TIGR00893 300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT----- 374 (399)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----
Confidence 111222222334444444444444444446777899999999999999999999999999999988888776644
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHHHH
Q 037413 219 TPFTA-WRIAFFAPGCLHVIMGILVLT 244 (530)
Q Consensus 219 ~~~~~-wr~~f~~~~~~~~~~~~~~~~ 244 (530)
| |++.|++.+++.++..+..++
T Consensus 375 ----g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 375 ----GSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH
Confidence 6 999999988887776665544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-11 Score=118.79 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
+...+..++.+.....+..++|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+ .+.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-------~~~~~~~~ 97 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY-------FMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch-------hHHHHHHH
Confidence 333444444444444556677776655 8999999999999999999999999999999999984 66667777
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcc
Q 037413 362 GGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTA 439 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~ 439 (530)
.++..++....++.+.+.+..++.+++.+...+....++. .+++++|+++.|+.+...++|+.++|.+.+. .+..+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 7776666666677777766667778887777777776644 6677889999999999999999999998776 4455666
Q ss_pred hhHHHHHHHH
Q 037413 440 TGISLMGIMI 449 (530)
Q Consensus 440 ~~~~~~~~~~ 449 (530)
..+...++..
T Consensus 178 ~~f~~~~i~~ 187 (434)
T PRK11663 178 YGMMIAGIIA 187 (434)
T ss_pred HHHHHHHHHH
Confidence 6665544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-11 Score=121.30 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=122.7
Q ss_pred ccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhh--hH-H-HHHHHH
Q 037413 83 APLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVS--SA-R-GYIAAR 158 (530)
Q Consensus 83 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r 158 (530)
....|.+.+++|.+.....+......+...++.++.|++.||+|||++++.+.++.+++.++.+... +. + ....+.
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3456778888999887777777788888999999999999999999999999999998888765431 11 1 223344
Q ss_pred HHHHhhhhh-h-hhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHH--HHHhcCCCCCCchhHHHHHHHHH
Q 037413 159 FMIGFSLAT-F-VSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYE--LIRRAGATPFTAWRIAFFAPGCL 234 (530)
Q Consensus 159 ~l~G~~~~~-~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~--~~~~~~~~~~~~wr~~f~~~~~~ 234 (530)
++.+.+.+. + +....++.|.+|+++|+.++|+......+|..+++.+.|.+.. +. .+..+|++.|++.+++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~ 445 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWL-----VAHFHNGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccch-----hhhccCccHHHHHHHH
Confidence 445555543 3 5667999999999999999999999999999888877776551 11 1223899999999888
Q ss_pred HHHHHHHHHHhccCC
Q 037413 235 HVIMGILVLTLGQDL 249 (530)
Q Consensus 235 ~~~~~~~~~~~~~~~ 249 (530)
+++.+++.+++.||+
T Consensus 446 ~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 446 GVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHhccccC
Confidence 887777777665553
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-11 Score=116.29 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
......| ++.+.+|.+..+.+++.+...++..++.++.|+++||++||+ .+..+..+.++..++....++.+
T Consensus 35 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 106 (398)
T TIGR00895 35 AMGFAAP-AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR-------VLLWSILLFSVFTLLCALATNVT 106 (398)
T ss_pred HHHhhHH-HHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHccchH
Confidence 3333444 455668999999999999999999999999999999999884 55566666666666666667777
Q ss_pred HHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHH
Q 037413 377 LSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMI 449 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 449 (530)
..++..++.|++.+...+...+++. ..++++|+++.++.+....+|..++|.+.+. .+..++...+...+.+.
T Consensus 107 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 7777788888888888887777754 5667889999999999999999999998776 44556665555544333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-10 Score=111.31 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=118.1
Q ss_pred hHHHHHhcCCChhhHHHHH-HHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHH
Q 037413 86 VPIIRDNLNLIKTDIGNAG-IASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM---VFV-SSARGYIAARFM 160 (530)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~-s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l 160 (530)
.|.+.+++|.+..+.+++. ....++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4556678999999999997 46678999999999999999999988877666555544332 333 455556666677
Q ss_pred HHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMG 239 (530)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (530)
+.++.|. .....++..+..+++.++...++.++..++|..+++.+.+.+.+.. ||+..|.+.++++++..
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~---------G~~~~f~~~~~~~l~~l 396 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH---------GWPTFYLFSVAAAVPGL 396 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ChHHHHHHHHHHHHHHH
Confidence 6666663 5666788889999999999999999999999888887888888766 99999999988888776
Q ss_pred HHHHHh
Q 037413 240 ILVLTL 245 (530)
Q Consensus 240 ~~~~~~ 245 (530)
++.++.
T Consensus 397 ~~~~~~ 402 (491)
T PRK11010 397 LLLLVC 402 (491)
T ss_pred HHHHHH
Confidence 666655
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=117.20 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhh-ccCCCCCcchhHHHH
Q 037413 280 RTWIFVLLYGMSLGIELTIDNVIAEYFFDR--FNLKLHTAGVIAATFGMANIFARPLGGLMSDM-AARPFGMRGRLWNLY 356 (530)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~r~~~~~~~~~~~ 356 (530)
.++.+.+..++....++....++|.|+.+. +|++..+++.+.+...++..++.+++|+++|| +|||+ .+.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-------~l~ 83 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-------TMV 83 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-------HHH
Confidence 345555666666778888888999999887 89999999999999999999999999999999 79984 666
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccc---cccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 357 IVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRR---SLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
++..+.+++.+++...++.+...+...+.+++.+...+...+++. .++++ +|+++.++.+...++|++++|.+.+.
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666666666777778888777777777754 44443 48889999999999999999999887
Q ss_pred -ccCCCcchhHHHHHHHH
Q 037413 433 -SSRHSTATGISLMGIMI 449 (530)
Q Consensus 433 -~~~~~~~~~~~~~~~~~ 449 (530)
.+..++...+...++.+
T Consensus 164 l~~~~g~~~~f~~~~~~~ 181 (475)
T TIGR00924 164 IAENYGYHVGFNLAAVGM 181 (475)
T ss_pred HHHhcChHHHHHHHHHHH
Confidence 44456666666555433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=118.36 Aligned_cols=138 Identities=16% Similarity=0.232 Sum_probs=112.2
Q ss_pred chH-HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 037413 85 LVP-IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF-SMVFVSSARGYIAARFMIG 162 (530)
Q Consensus 85 ~~~-~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 162 (530)
..| .+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++..+ +....++.+.+.+..++.|
T Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339 (405)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344 45678899999999999999999999999999999999999999888776533332 3344566777777777777
Q ss_pred hhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCc-hhHHHHHH
Q 037413 163 FSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTA-WRIAFFAP 231 (530)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~-wr~~f~~~ 231 (530)
+..+. .+....++.|.+|+++|++++|+.+...++|..+++.+.+.+.+.. | |+..+...
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~---------g~~~~~~~~~ 401 (405)
T TIGR00891 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL---------DEYGTALASL 401 (405)
T ss_pred HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---------cccchhHHhh
Confidence 76664 6677788999999999999999999999999999999999888876 5 77666553
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-10 Score=106.41 Aligned_cols=159 Identities=15% Similarity=0.207 Sum_probs=130.6
Q ss_pred hccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh-hhHHHHHH
Q 037413 78 STFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV-SSARGYIA 156 (530)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~ 156 (530)
....+..+-|.+++..|++.+.++++.-+|.++..++.++.|++.|| +.|+.+.....+.++..+...+. ++.+..++
T Consensus 227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~ 305 (394)
T COG2814 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALA 305 (394)
T ss_pred hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34456667888999999999999999999999999999999999999 99999999888887777776655 55566666
Q ss_pred HHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 037413 157 ARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235 (530)
Q Consensus 157 ~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (530)
.-++.|+..+. .......+++ ..|+.+..+.+++....++|..+|..+++.+.+.. |+....++.+++.
T Consensus 306 ~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~---------g~~~~~~~~a~l~ 375 (394)
T COG2814 306 LLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL---------GYAATGWVGAALL 375 (394)
T ss_pred HHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHH
Confidence 66776666664 4444556666 44678999999999999999999999999999876 9999999999998
Q ss_pred HHHHHHHHHhcc
Q 037413 236 VIMGILVLTLGQ 247 (530)
Q Consensus 236 ~~~~~~~~~~~~ 247 (530)
++..++.+...+
T Consensus 376 ~~a~~~~~~~~~ 387 (394)
T COG2814 376 LLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHh
Confidence 887777666543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=115.13 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=109.6
Q ss_pred cccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh--CCchhh-HHHHHHHHHHHHHHHh--hhhHHH
Q 037413 80 FAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL--GPRYGC-AFLIMLSAPTVFSMVF--VSSARG 153 (530)
Q Consensus 80 ~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~ 153 (530)
+......|. +++++|.+..+.+++...+.++..++.++.|+++||+ |||+.. .....+..++.++..+ ..+.+.
T Consensus 270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV 349 (452)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence 344445666 4555899999999999999999999999999999999 555432 2222333333333222 234555
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhh-HHhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGI-TQLLTPFIYELIRRAGATPFTAWRIAFFAP 231 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (530)
++++.++.|.+... ......+..|.+|+++||+++|+.+....+|..+ ++.+.+.+.+.. ||+..|++.
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~---------g~~~~f~~~ 420 (452)
T PRK11273 350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---------GWDGGFMVM 420 (452)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh---------cchHHHHHH
Confidence 55555555554332 3333456779999999999999998888887654 788888888876 899999999
Q ss_pred HHHHHHHHHHHHHhc
Q 037413 232 GCLHVIMGILVLTLG 246 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~ 246 (530)
++.+++.++....+.
T Consensus 421 ~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 421 IGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHHHHHHh
Confidence 887777666655543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=114.34 Aligned_cols=160 Identities=12% Similarity=-0.002 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
+......++.....+....+++.|+.+..|.+..+.|+..+...+...+..++.|+++||++||+ .+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~-------~l~~~~~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP-------MIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH-------HHHHHHHH
Confidence 34445555666666777778899998889999999999999999999999999999999999984 66677777
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcch
Q 037413 362 GGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTAT 440 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 440 (530)
..+.++.+...++.+.+++..++.|++.+...+...+++ +..++++++++.|+.+...++|..++|.+.+.....+++.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~ 165 (400)
T PRK11646 86 RAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRL 165 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 777777666667777777777888888776677666664 4667889999999999999999999999987743444444
Q ss_pred hHHHHHHH
Q 037413 441 GISLMGIM 448 (530)
Q Consensus 441 ~~~~~~~~ 448 (530)
.++..+..
T Consensus 166 ~f~~~~~~ 173 (400)
T PRK11646 166 VCATGAVL 173 (400)
T ss_pred HHHHHHHH
Confidence 44444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=112.39 Aligned_cols=143 Identities=9% Similarity=0.006 Sum_probs=117.8
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 164 (530)
..|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.++.++++.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34555577999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhh-hhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAA-GWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
.+. .+....++.+. +++++++..++.. ....+|..+|+.+++.+.+.. |+ ..|+..+++.++.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---------g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---------GA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cH-HHHHHHHHHHHHH
Confidence 995 66777888776 5566788888875 445677788888888888776 76 4666666655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-10 Score=112.58 Aligned_cols=152 Identities=19% Similarity=0.141 Sum_probs=134.7
Q ss_pred cchHHH-HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 037413 84 PLVPII-RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIG 162 (530)
Q Consensus 84 ~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 162 (530)
.++|.+ ++++|.+...+|++.+++.+|.++++++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 456765 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 037413 163 FSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGIL 241 (530)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 241 (530)
++... .....+.+.+..|++.||+.++++++....+..+|.++.+.+.+.. |-+..+.+.++..++..++
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~---------g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF---------GVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CHHHHHHHHHHHHHHHHHH
Confidence 99886 6677788999999999999999999999999999999999999887 8999998887766555554
Q ss_pred HHH
Q 037413 242 VLT 244 (530)
Q Consensus 242 ~~~ 244 (530)
.+.
T Consensus 390 ~~~ 392 (524)
T PF05977_consen 390 ALR 392 (524)
T ss_pred HHH
Confidence 443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-10 Score=108.05 Aligned_cols=321 Identities=10% Similarity=0.051 Sum_probs=187.1
Q ss_pred HHHH-HHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhh
Q 037413 100 IGNA-GIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMST 177 (530)
Q Consensus 100 ~~~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~ 177 (530)
.|.. .++....+.+.+++.+.+.|+.|.|+.+.++......-.+..-+ .|-+-++++-.+.|+|.+. +..--.++++
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 3443 67777788889999999999999999999999999887777665 4567788899999999997 6777799999
Q ss_pred hccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh-H----------HHHHHHHHHHHHHHHHHHhc
Q 037413 178 MFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR-I----------AFFAPGCLHVIMGILVLTLG 246 (530)
Q Consensus 178 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr-~----------~f~~~~~~~~~~~~~~~~~~ 246 (530)
..+++.+.+..++..+....+..+|.++.-.+...-...+.... +-+ + ...+.+++..+..+...-..
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~ 208 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITD-GTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD 208 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEeccccccccc-chhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence 99999999999998888888877766543222222111111111 111 1 11111111111101011111
Q ss_pred cCCCCCCccccccCCCCCCCChhHH---HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCH-HHHHHH
Q 037413 247 QDLPDGNLNTLQKKGDVPTDKFPKV---LWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDR--FNLKL-HTAGVI 320 (530)
Q Consensus 247 ~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~~~~~~ 320 (530)
. .|.+.... ..+.. +..+.+. ..+++++|+...+...++........+....|..+.-. .+.+. ...++.
T Consensus 209 ~-~p~~~~~~-~~~~~--~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~ 284 (461)
T KOG3098|consen 209 F-LPSKDVVN-CKSSS--ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIY 284 (461)
T ss_pred e-cCccchhh-hhhhc--cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHH
Confidence 1 12111000 01111 1233333 34556677776666555444333333333444443322 22222 233444
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh--cC----------------CcHHHHHHHH
Q 037413 321 AATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG--RA----------------STLPLSILSM 382 (530)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~~~~~~~ 382 (530)
....+++.+++....+.+.+|..+.. +...+.++..+..+.+++.. .. ++.....+..
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg----~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFG----RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcc----cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 44566777777777777777665542 22233333333333322221 10 1234666677
Q ss_pred HHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhh
Q 037413 383 ILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLF 430 (530)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 430 (530)
++.|++-.......+.++....|+.+..+.++.-.-..+++.++-+..
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 788888888888888888877788888888888887777776655553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=112.64 Aligned_cols=143 Identities=10% Similarity=0.174 Sum_probs=121.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHH
Q 037413 94 NLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQ 172 (530)
Q Consensus 94 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~ 172 (530)
+.+....|.+.++..+...++.++.|++.||+|+|+.+.++.++.+++..+..+++|.+.+++.+++.|++... .....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999888888888999999999999998875 45666
Q ss_pred HHHhhhccCCcchhhHhH-hhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 173 YWMSTMFNGKIIGLVNGT-AAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 173 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
.+..+..+++.++...+. .+....+|..+++.+++.+.+.. ||+.+|.+.+++.++.+++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---------G~~~~f~~~~~~~~i~~~~~~~~ 394 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---------GFQGAYLVLGCIVLLFTLISVFT 394 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888777776655 56677899999999999988876 99999999999988887766554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=112.36 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhc-cCCCCCcchhHHHHH
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMA-ARPFGMRGRLWNLYI 357 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~r~~~~~~~~~~~~ 357 (530)
+.++.++...+.....+++...++|.|+.+.+|++..+++.+...+.....++.+++|+++||+ |||+ .+.+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-------~ili 81 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-------AVML 81 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-------HHHH
Confidence 4566666666777778888889999999998999999999999999999999999999999999 9884 5556
Q ss_pred HHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHhhhhhcccccccc-ccccc--cccchhhhhhhhhhHHHHhhhhhhhh-
Q 037413 358 VQTLGGIFCICLGRAS-TLPLSILSMILFSITTQAACGATFGIIP-FISRR--SLGVISGLTGAGGNFGSGLTQLLFFT- 432 (530)
Q Consensus 358 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~--~~g~~~g~~~~~~~~g~~~~~~~~~~- 432 (530)
+.++..++.+++.... +.....+.+.+..++.+...+...+++. .+|++ +|.++.++.....++|+.++|.+.+.
T Consensus 82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L 161 (493)
T PRK15462 82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA 161 (493)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544443322 2233334444455566655565566654 45554 69999999999999999999999888
Q ss_pred ccCCCcchhHHHHHHHH
Q 037413 433 SSRHSTATGISLMGIMI 449 (530)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (530)
.+..+++..+...++.+
T Consensus 162 ~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 162 QEEYSWAMGFGLAAVGM 178 (493)
T ss_pred HhhhChHHHHHHHHHHH
Confidence 44567777776554433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=113.97 Aligned_cols=134 Identities=15% Similarity=0.070 Sum_probs=110.5
Q ss_pred ccccchHHHHH-hcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh---hhHHHHHH
Q 037413 81 AAAPLVPIIRD-NLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV---SSARGYIA 156 (530)
Q Consensus 81 ~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~ 156 (530)
......|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.+++.++..+. ++.+.+.+
T Consensus 279 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPF 358 (471)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 33445565444 689999999999999999999999999999999999999999988888877766553 34455556
Q ss_pred HHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 157 ARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 157 ~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
..++.|++.+. ++....++.+..|+++++.++++.+....+|..+|+.+++.+.+...
T Consensus 359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888888885 67777888899999999999999999999999999999988877764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=112.08 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHH
Q 037413 288 YGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCI 367 (530)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~ 367 (530)
.++...........+|.++.+.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+..+.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-------VLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-------eEeehhhhhhhHHH
Confidence 33444444445556665677789999999999999999999999999999999999883 55566666665533
Q ss_pred HhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHH
Q 037413 368 CLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLM 445 (530)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 445 (530)
+..+.++.+..++..++.|++.+...+....++. ..++++|+.+.++.+....+|..++|.+.+. .+..+++..++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 78 LLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred HhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 3333366667888888999998888888888855 6677799999999999999999999999887 4455666666666
Q ss_pred HHHHHHHHH
Q 037413 446 GIMIVCCTF 454 (530)
Q Consensus 446 ~~~~~~~~~ 454 (530)
++..++..+
T Consensus 158 ~~~~~~~~i 166 (352)
T PF07690_consen 158 AILSLIAAI 166 (352)
T ss_dssp HHHHHHHHH
T ss_pred cchhhhhhh
Confidence 655555544
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-09 Score=93.06 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=122.5
Q ss_pred HhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh-----
Q 037413 74 TCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV----- 148 (530)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----- 148 (530)
......+.++..-|++++.+|.|.+|...+.++..+|..+ .++.|.+.|++|++.++.+|.+...+|..+...+
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3334577788889999999999999999999999999886 5999999999999999999999999999887653
Q ss_pred --hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh
Q 037413 149 --SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR 225 (530)
Q Consensus 149 --~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr 225 (530)
.++|.+.+..++.|.+.+. ..++.....+.||. +||.+.|+.-+..+++..+-. .+...+-. ...-+
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t----~i~~~~f~-----~~~~~ 161 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFT----QIYSAFFG-----DDPSS 161 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHH----HHHHHHcC-----CChHH
Confidence 4788888888888888775 56666777788875 799999999888877775433 22332211 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC
Q 037413 226 IAFFAPGCLHVIMGILVLTLGQDLPD 251 (530)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~~~~~p~ 251 (530)
. +++.+....++.++..++++..|+
T Consensus 162 f-ll~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 162 F-LLFLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred H-HHHHHHHHHHHHHHHhhheeccCC
Confidence 3 344444444444555555555444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=114.65 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHh
Q 037413 290 MSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICL 369 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 369 (530)
+.+.....+....| ++.+.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+..+.+++.++.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 6 AYYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-------FLPIGLILCAIVNLFF 77 (379)
T ss_pred HHHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee-------hhHHHHHHHHHHHHHH
Confidence 33444444454555 566778999999999999999999999999999999999985 5556666666666666
Q ss_pred hcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhh-hhhh-ccCCCcchhHHHHH
Q 037413 370 GRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQL-LFFT-SSRHSTATGISLMG 446 (530)
Q Consensus 370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~~~~ 446 (530)
...++.+..++..++.|++.+...+...+++. ..++++|+.+.++.+....+|..++|. +.+. .+..++...+...+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 66678888888888888888888888887754 667778999999999999999999994 4333 33445555544444
Q ss_pred HH
Q 037413 447 IM 448 (530)
Q Consensus 447 ~~ 448 (530)
.+
T Consensus 158 ~~ 159 (379)
T TIGR00881 158 II 159 (379)
T ss_pred HH
Confidence 33
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-10 Score=112.91 Aligned_cols=172 Identities=9% Similarity=0.041 Sum_probs=121.9
Q ss_pred hhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhh-ccCCCCCcchh
Q 037413 275 AITNYR-TWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDM-AARPFGMRGRL 352 (530)
Q Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~r~~~~~~~ 352 (530)
.+++|+ ++..++..++....++....+++.|+.+.+|++..+++...+..........+++|+++|| +|||+
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~------ 89 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR------ 89 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH------
Confidence 345664 7777777778888888889999999999999999988887776665555556789999999 59983
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHhhhhhcccccccc-ccccc--cccchhhhhhhhhhHHHHhhhh
Q 037413 353 WNLYIVQTLGGIFCICLGRAS-TLPLSILSMILFSITTQAACGATFGIIP-FISRR--SLGVISGLTGAGGNFGSGLTQL 428 (530)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~--~~g~~~g~~~~~~~~g~~~~~~ 428 (530)
.+..+.++.+++..++.... +.+..++...+.+++.+...+...++.. .++++ ++..+.++.+...++|+.++|.
T Consensus 90 -~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 90 -VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 55566666665555554443 3444555566777877777776666654 44433 3456788888999999999999
Q ss_pred hhhh-ccCCCcchhHHHHHHHHHHHH
Q 037413 429 LFFT-SSRHSTATGISLMGIMIVCCT 453 (530)
Q Consensus 429 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 453 (530)
+.+. .+..+++..+...++...++.
T Consensus 169 i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9887 455666666665544333333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=112.35 Aligned_cols=129 Identities=14% Similarity=0.147 Sum_probs=114.4
Q ss_pred cchHHHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH
Q 037413 84 PLVPIIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSS-ARGYIAARFMI 161 (530)
Q Consensus 84 ~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 161 (530)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455665554 8999999999999999999999999999999999999999988888888888887774 88889999999
Q ss_pred Hhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHH
Q 037413 162 GFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYEL 212 (530)
Q Consensus 162 G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 212 (530)
|++.+. .+....++.|.+|+++|+++.++......+|..+++.+++.+.+.
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 677889999999999999999999999999999999888887764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-10 Score=109.97 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=107.2
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHHh
Q 037413 88 IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF---V-SSARGYIAARFMIGF 163 (530)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 163 (530)
.+.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456778988877666666667777888999999999999999998887766555443322 1 234455556677788
Q ss_pred hhhh-hhhHHHHHhhhccCCcchhhHhHhhhh-hhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 037413 164 SLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGW-GNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGIL 241 (530)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 241 (530)
+.+. .+....++.|.+|++.|+...++.... ..+|..++|.+.+.+.+.. ..+|+.++.+.++..++..+.
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-------~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-------GGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHHH
Confidence 8775 667789999999999998888875433 3366767776666665432 115888888887777766666
Q ss_pred HHHh
Q 037413 242 VLTL 245 (530)
Q Consensus 242 ~~~~ 245 (530)
.+..
T Consensus 429 ~~~~ 432 (438)
T PRK09952 429 ALLM 432 (438)
T ss_pred HHHc
Confidence 5543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=112.32 Aligned_cols=131 Identities=13% Similarity=0.182 Sum_probs=99.0
Q ss_pred ccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 037413 83 APLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIG 162 (530)
Q Consensus 83 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 162 (530)
...+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..++....++.....+.-++.|
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 251 FGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 34567666778999999999999999999999999999999999999999888777666555443322211222233444
Q ss_pred hhhh--h-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 163 FSLA--T-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 163 ~~~~--~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
++.. + ......++.|.+|+++|++++|+......+|..++|.+.+.+.+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 4322 2 3445577899999999999999999999999999998888887655
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=110.11 Aligned_cols=144 Identities=18% Similarity=0.273 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHH
Q 037413 280 RTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQ 359 (530)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~ 359 (530)
.+|...+.++..+...+.+..+.|.++.+.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-------TTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHH
Confidence 4566667777777777778888887788889999999999999999999999999999999999984 556666
Q ss_pred HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 360 TLGGIFCICLGRAS-TLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
++..+..++....+ +.+..++..++.|++.+. ......++ +..++++|+.+.++.....++|..+++.+.+
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 66666666666666 777777777777776443 34444554 4667789999999998777777776666643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=108.78 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=129.9
Q ss_pred chHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCc--hhhHHHHHHHHHHHHHHHh--------hhhHHHH
Q 037413 85 LVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPR--YGCAFLIMLSAPTVFSMVF--------VSSARGY 154 (530)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l 154 (530)
......+++|++..+...+.-+..+..+++++++|++.||+|.| ++++++++++.+..+...+ .++-+.+
T Consensus 304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f 383 (477)
T PF11700_consen 304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF 383 (477)
T ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence 34445669999999999999999999999999999999999999 8999988888666665555 5788899
Q ss_pred HHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 037413 155 IAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGC 233 (530)
Q Consensus 155 ~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~ 233 (530)
++.-++.|+..|. .+.+.++.++..|+++.+..+|++.........+||++.+.+.+... +-|+.+....+
T Consensus 384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--------~~r~g~~~l~~ 455 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--------SQRYGFLFLLV 455 (477)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CchhHHHHHHH
Confidence 9999999999997 88899999999999999999999999999999999988888877762 47888888877
Q ss_pred HHHHHHHHHHHh
Q 037413 234 LHVIMGILVLTL 245 (530)
Q Consensus 234 ~~~~~~~~~~~~ 245 (530)
+.++..++.++.
T Consensus 456 lf~~gl~ll~~v 467 (477)
T PF11700_consen 456 LFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHhhc
Confidence 766665555443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-10 Score=111.52 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
....++| .+.+.+|++..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.++..++....++.+
T Consensus 54 ~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~-------~~~~~~~~~~~~~~~~~~~~s~~ 125 (476)
T PLN00028 54 AAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY-------GSAFLLMLTAPAVFCMSLVSSAT 125 (476)
T ss_pred HHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HHHHHHHHHHHHHHHHHHhcCHH
Confidence 3333444 456679999999999888888899999999999999999983 55556666666666666667777
Q ss_pred HHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 377 LSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
.+++..++.|++.+...+ ...+ .+.+++++||.+.|+.+...++|+.+++.+.+
T Consensus 126 ~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777654433 2333 34567789999999998888888777765543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-10 Score=110.09 Aligned_cols=145 Identities=10% Similarity=-0.003 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 297 TIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
.....+|. +.+.+|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+..+..+..+.....++.+
T Consensus 23 ~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 23 MYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-------VLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-------HHHHHHHHHHHHHHHHHHHccHH
Confidence 33334554 45568999999999999999999999999999999999984 56666666666666666667788
Q ss_pred HHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHH
Q 037413 377 LSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMI 449 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 449 (530)
...+..++.|++.+...+...+++. ..++++|+++.|+.+....+|..++|.+.+. .+..++...+...++..
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 169 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAG 169 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 7777788888888887777777754 5677889999999999999999999999776 34455555554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-10 Score=112.25 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=109.8
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHH
Q 037413 277 TNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLY 356 (530)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~ 356 (530)
+++.++...+.....+.....+....| ++++ .|.++.+.+++.+...++..++.++.|+++||++||+ .+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-------~~~ 95 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV-------FLP 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce-------ehH
Confidence 344445454544444444444444455 4555 5999999999999999999999999999999999984 334
Q ss_pred HHHHHHHHHHHHhhcC----CcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 357 IVQTLGGIFCICLGRA----STLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 357 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
.+..+.++..++.... .+.+...+..++.|++.+...+..... .+.+|+++|++++|+.+....+|+.++|.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 96 AGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 4444444444433322 344455555666777777666655555 44677889999999999999999998887754
Q ss_pred h-cc-CCCcchhHHHHHHHHHH
Q 037413 432 T-SS-RHSTATGISLMGIMIVC 451 (530)
Q Consensus 432 ~-~~-~~~~~~~~~~~~~~~~~ 451 (530)
. .+ ..+++..++..+++.++
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 3 22 34555555554444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=114.41 Aligned_cols=178 Identities=13% Similarity=0.104 Sum_probs=110.4
Q ss_pred HHHHhhhhccccccchHHHHHhcCCChhhHHH------------HHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 71 SFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGN------------AGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
.++...+..+......|.+.++.|.+..+.+. ...+..++..++.++.+++.||+|||++++++.++.
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~ 375 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence 33333333344445577777788876542211 233344566678889999999999999999988888
Q ss_pred HHHHHHHHhhhh---HHHHHHHHHH-HHhh-hhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 139 APTVFSMVFVSS---ARGYIAARFM-IGFS-LATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 139 ~~~~~~~~~~~~---~~~l~~~r~l-~G~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
+++.++.++..+ ....++.-++ ..++ .+..+....+.+|.+|.+.|+++.|+.+....+|..+++.+.+.+.+..
T Consensus 376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 777766654321 1111111111 1121 2224556677899999999999999999999999988888777765521
Q ss_pred Hhc-CCCCCCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 037413 214 RRA-GATPFTAWRIAFFAPGCLHVIMGILVLTLGQDL 249 (530)
Q Consensus 214 ~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 249 (530)
... +.....++...|++.+++.++..+.. +++||+
T Consensus 456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt 491 (502)
T TIGR00887 456 DPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPET 491 (502)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHh-eEeccC
Confidence 000 00001255678888888777665544 454543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=108.56 Aligned_cols=157 Identities=14% Similarity=-0.016 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHH
Q 037413 284 FVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGG 363 (530)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 363 (530)
..+.+.+.+.-........| .+.+++|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+.++.+
T Consensus 13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-------~~~~~~~~~~ 84 (412)
T TIGR02332 13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-------WIAGIMVLWG 84 (412)
T ss_pred HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-------HHHHHHHHHH
Confidence 33333343443444444444 677889999999999999999999999999999999999984 6667777777
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhhcc-------C
Q 037413 364 IFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFTSS-------R 435 (530)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~-------~ 435 (530)
+..++....++.+.+++.-++.|++.+...+....++. .+++++|+++.|+.+....+|..+++.+.+... .
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 77777777778888888888899999888777777655 567788999999999999999999998866521 2
Q ss_pred CCcchhHHHHHHH
Q 037413 436 HSTATGISLMGIM 448 (530)
Q Consensus 436 ~~~~~~~~~~~~~ 448 (530)
.+++..+...++.
T Consensus 165 ~gwr~~f~~~~~~ 177 (412)
T TIGR02332 165 KGWQWLFLLEGFP 177 (412)
T ss_pred cchhHHHHHHHHH
Confidence 3555555544333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=107.60 Aligned_cols=151 Identities=9% Similarity=-0.044 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 037413 293 GIELTIDNVIAEY--FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG 370 (530)
Q Consensus 293 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (530)
..+.....+.|.+ +.+.+|.+..+.+++.+...++..++.++.|+++||++||+ .+..+..+..+..++..
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP-------VLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH-------HHHHHHHHHHHHHHHHH
Confidence 3344444555544 55678999999999999999999999999999999999984 55555556666666666
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 371 RASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
..++.+...+..++.|++.+...+...+++ +.+++++++...+..+....++..++|.+.+. .+..+++..+...+..
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~ 169 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI 169 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 667777777777777777666555555554 46667778888888888888899999998776 4455655555544444
Q ss_pred HH
Q 037413 449 IV 450 (530)
Q Consensus 449 ~~ 450 (530)
.+
T Consensus 170 ~~ 171 (401)
T PRK11043 170 TL 171 (401)
T ss_pred HH
Confidence 33
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=107.18 Aligned_cols=157 Identities=13% Similarity=-0.032 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHH
Q 037413 286 LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIF 365 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~ 365 (530)
+..+............+|.+. +.+|.+..+.++..+...++..++.++.|+++||+|||+ .+..+..+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-------~l~~~~~~~~i~ 81 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-------VAIPGAALFIIA 81 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-------HHHHHHHHHHHH
Confidence 333333344444445566655 448999999999999999999999999999999999984 555666666666
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHH
Q 037413 366 CICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGIS 443 (530)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 443 (530)
..+....++.+..++..++.|++.+...+..++++ +..++++|+++.++.+....++..++|.+.+. .+..++...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 82 SLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 66666667777667777777887777777677664 46678899999999999999999999988766 34455555555
Q ss_pred HHHHHHH
Q 037413 444 LMGIMIV 450 (530)
Q Consensus 444 ~~~~~~~ 450 (530)
..+.+.+
T Consensus 162 ~~~~~~~ 168 (392)
T PRK10473 162 TMAAMGI 168 (392)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=107.95 Aligned_cols=135 Identities=14% Similarity=0.160 Sum_probs=94.4
Q ss_pred ccccccchHHH-HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH-HH---HhhhhHHH
Q 037413 79 TFAAAPLVPII-RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF-SM---VFVSSARG 153 (530)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~---~~~~~~~~ 153 (530)
........|.+ ++.+|++..+.++....+.++..++.+++|+++||+|||+++..+.++..+..+ .. ...+++..
T Consensus 254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR 333 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 33344456664 455899999999999999999999999999999999999988876554433221 11 12234545
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhh-hhhhhHHhHHHHHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGN-MGGGITQLLTPFIYELI 213 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~~~~~l~~~~ 213 (530)
+.+..++.|++.+. .+....++.|.+|+++|+..+++...... ++..++|.+.+.+.+..
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 55556666777775 45556789999999999999998644333 34556777666666654
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-10 Score=107.97 Aligned_cols=181 Identities=17% Similarity=0.045 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
+.....+.+.....+............+-++-|++..+..+......+...+..+++..+.||+|||+.++.+..+..+.
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 33333334444444444445555566688889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhh---hhHH------HHHHHHHHHHhhhh--hhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 142 VFSMVFV---SSAR------GYIAARFMIGFSLA--TFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 142 ~~~~~~~---~~~~------~l~~~r~l~G~~~~--~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
.++.... .+.. ..+++.++..++.+ .-|...-+.+|.+|++.|..++++......++..+-....+.+.
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~ 428 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ 428 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877653 1111 12344555555555 35777899999999999999999998888887777766666766
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 037413 211 ELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDG 252 (530)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 252 (530)
+.+ |= +.|++..+++++..+..++.+||+..+
T Consensus 429 ~~~---------g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 429 NVI---------GP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHh---------cc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 665 43 888889999999999999888776543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=105.44 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=107.1
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHH
Q 037413 276 ITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL 355 (530)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~ 355 (530)
.-+|.++...+.....+...+.+....+.+-.+.+|++..+.+++.++..+...++++..|++.||+|.|+ +.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~-------v~ 103 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR-------WT 103 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HH
Confidence 33466777766666666666666655555545469999999999999999999999999999999999984 55
Q ss_pred HHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 356 YIVQTLGGIFCICLGRA-----STLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 356 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
.++.++..+..+...+. ++++.+++..++.|++ +..++.....+. .+|+++||++.|+....+++|..+++.+
T Consensus 104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 55555555555555543 6788888888888887 556666666665 5677889999999976677666544443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=108.65 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhh-ccCCCCCcchhHHHHH
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDM-AARPFGMRGRLWNLYI 357 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~r~~~~~~~~~~~~ 357 (530)
+.+|.++...++....++....+++.|+++.+|++..+++++...+.....+..+++|+++|| +|||+ .+.+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-------~~~~ 86 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-------TIVL 86 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-------HHHH
Confidence 456666677777778888889999999999999999999988888887778888899999999 99984 6666
Q ss_pred HHHHHHHHHHHhhcCCc-HHHHHHHHHHHHHHhhhhhcccccccc-ccccc--cccchhhhhhhhhhHHHHhhhhhhhh-
Q 037413 358 VQTLGGIFCICLGRAST-LPLSILSMILFSITTQAACGATFGIIP-FISRR--SLGVISGLTGAGGNFGSGLTQLLFFT- 432 (530)
Q Consensus 358 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~--~~g~~~g~~~~~~~~g~~~~~~~~~~- 432 (530)
+.++..++.+......+ ...+++...+.+++.+...+...+++. .+|++ +|+.++++.....++|..++|.+.+.
T Consensus 87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555554443 233445667778888888877777754 56555 45778999999999999999999877
Q ss_pred ccCCCcchhHHHH
Q 037413 433 SSRHSTATGISLM 445 (530)
Q Consensus 433 ~~~~~~~~~~~~~ 445 (530)
.+..+++..|...
T Consensus 167 ~~~~gw~~~F~i~ 179 (489)
T PRK10207 167 ADKFGYSVTYNLC 179 (489)
T ss_pred HHhhChHHHHHHH
Confidence 4456665555543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=106.15 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHH
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~ 358 (530)
+.++...+..+............+|.+. +++|.+..+.+++.+...++..++.++.|++.||+|||+ .+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~ 74 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH-------ILLFL 74 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH-------HHHHH
Confidence 4455566665555555556666677654 558999999999999999999999999999999999984 66677
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCC
Q 037413 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRH 436 (530)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~ 436 (530)
..+.++..++....++.+.+++..++.|++.+...+....+++ ..++++++.+.++......++..++|.+.+. .+..
T Consensus 75 ~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 154 (382)
T PRK10091 75 VALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF 154 (382)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc
Confidence 7777777777777788888888888889888777666655555 4566688999999988888999999988766 3445
Q ss_pred CcchhHHHHHHHH
Q 037413 437 STATGISLMGIMI 449 (530)
Q Consensus 437 ~~~~~~~~~~~~~ 449 (530)
+++..+...+...
T Consensus 155 gwr~~f~~~~~~~ 167 (382)
T PRK10091 155 SWRYTFLLIAVFN 167 (382)
T ss_pred cHHHHHHHHHHHH
Confidence 6665655544443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=106.57 Aligned_cols=146 Identities=9% Similarity=-0.016 Sum_probs=110.6
Q ss_pred hHHHHHhcCCChhhHHHHHHHHH-HHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh------hhhHHHHHHHH
Q 037413 86 VPIIRDNLNLIKTDIGNAGIASV-SGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF------VSSARGYIAAR 158 (530)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r 158 (530)
.+.+.+|.|++++++|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .++...++...
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 34455678999999999988776 466677899999999999999998877766433332221 12334445555
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccC-CcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNG-KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHV 236 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~ 236 (530)
++.+++.+. .+.......+..++ +++++.+++.++..++|..+++.+++.+.+.. ||+..|++.+++.+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---------G~~~~f~~~~~~~l 381 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---------GYAGGFLSGTVLAV 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccHHHHHHHHHHHH
Confidence 666777774 56666777777765 78899999999999999999999999998877 89999998877665
Q ss_pred HHHH
Q 037413 237 IMGI 240 (530)
Q Consensus 237 ~~~~ 240 (530)
+..+
T Consensus 382 ~a~~ 385 (390)
T TIGR02718 382 LAIL 385 (390)
T ss_pred HHHH
Confidence 5443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=107.31 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=111.8
Q ss_pred hHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh-----hhHHHHHHHHH
Q 037413 86 VPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV-----SSARGYIAARF 159 (530)
Q Consensus 86 ~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~ 159 (530)
.|. +.+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++.+++.++..+. .+++.+++.-+
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 444 467789999999998888888899999999999999999999999988888777776653 35677788889
Q ss_pred HHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 160 MIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
+.|++.+. .+....... ..++++||+..+..+....+|..+|+.+++.+.+.. +|....+..++..++.
T Consensus 318 ~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~---------~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG---------GNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC---------chHHHHHHHHHHHHHH
Confidence 99999885 554444433 334578999999998888888877776666654432 5655555555555554
Q ss_pred HHHHHHhccC
Q 037413 239 GILVLTLGQD 248 (530)
Q Consensus 239 ~~~~~~~~~~ 248 (530)
.++...+.++
T Consensus 388 ~~~~~~~~~~ 397 (406)
T PRK15402 388 LLLVRIFLKD 397 (406)
T ss_pred HHHHHHHhcc
Confidence 4444444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=109.46 Aligned_cols=158 Identities=14% Similarity=0.012 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHH
Q 037413 284 FVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGG 363 (530)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 363 (530)
+++..++...-...+...+|.+. +.+|.+..+.+++.+.+.++..++.++.|+++||+|||+ .+..+..+..
T Consensus 11 ~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-------~l~~~~~~~~ 82 (495)
T PRK14995 11 IVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR-------LLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHH
Confidence 33444444444445555677665 458999999999999999999999999999999999984 6777777777
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-ccc-ccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcch
Q 037413 364 IFCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFI-SRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTAT 440 (530)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 440 (530)
++.++....++.+.+++.-++.|++.+...+.....+ ..+ ++++|+++.|+......+|..++|.+.+. .+..+++.
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 7777777778888888888888998887777666654 454 56899999999999999999999999887 45566666
Q ss_pred hHHHHHHHH
Q 037413 441 GISLMGIMI 449 (530)
Q Consensus 441 ~~~~~~~~~ 449 (530)
.++....+.
T Consensus 163 ~f~i~~~~~ 171 (495)
T PRK14995 163 VFLINVPIV 171 (495)
T ss_pred HHHHHHHHH
Confidence 665544333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=111.08 Aligned_cols=160 Identities=13% Similarity=0.014 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHH
Q 037413 285 VLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGI 364 (530)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~ 364 (530)
++..+............+|.+. +.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~ 79 (485)
T TIGR00711 8 MLGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR-------LFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH-------HHHHHHHHHHH
Confidence 3333344344444455566554 558999999999999999999999999999999999984 66667777777
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhH
Q 037413 365 FCICLGRASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGI 442 (530)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~ 442 (530)
+.++....++.+..++..++.|++.+...+...+++ +.+++++|+.+.++......+|..++|.+.+. .+..++...+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 777777778888888888888998888888887775 46678899999999999999999999999877 4556666666
Q ss_pred HHHHHHHHHH
Q 037413 443 SLMGIMIVCC 452 (530)
Q Consensus 443 ~~~~~~~~~~ 452 (530)
+..+...++.
T Consensus 160 ~~~~~~~~~~ 169 (485)
T TIGR00711 160 LINVPIGIIV 169 (485)
T ss_pred hhhhHHHHHH
Confidence 6554444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.9e-08 Score=92.55 Aligned_cols=350 Identities=11% Similarity=0.009 Sum_probs=190.7
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhc-CCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDNL-NLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS 144 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 144 (530)
..+....++.....-++....+.+..+. .-+---.+...-.-.+..++.++..|.+.||..|.+++..++++--++..+
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~ 84 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA 84 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence 3444555555555444444455444443 223333444445555667788899999999999999887776655443333
Q ss_pred HHh------h--h----hHHHH---HHHHHHHHhhhhhhhhH--HHHHhhhc------cCCcchhhHhHhhhhhhhhhhh
Q 037413 145 MVF------V--S----SARGY---IAARFMIGFSLATFVSC--QYWMSTMF------NGKIIGLVNGTAAGWGNMGGGI 201 (530)
Q Consensus 145 ~~~------~--~----~~~~l---~~~r~l~G~~~~~~~~~--~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~ 201 (530)
.+. . . +-+.. ++.-.+.|.-.-....+ .++=.||. +++.+.+.++...-.--+.-++
T Consensus 85 s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll 164 (432)
T PF06963_consen 85 SCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL 164 (432)
T ss_pred HHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 221 1 1 11222 22222222222211222 23334553 2334556666665555667788
Q ss_pred HHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcc----CCCCCC---ccccccCCCC--------CCC
Q 037413 202 TQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQ----DLPDGN---LNTLQKKGDV--------PTD 266 (530)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~----~~p~~~---~~~~~~~~~~--------~~~ 266 (530)
+|++.+.+.... +.+....+.+...++..++=++++. ..|+-. +++.++..+. ...
T Consensus 165 aPl~vG~l~t~~---------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (432)
T PF06963_consen 165 APLFVGLLMTFA---------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDP 235 (432)
T ss_pred HHHHHHHHhhcc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchh
Confidence 887777776654 7888888888887777666554432 223211 1110000000 001
Q ss_pred Chh-----------HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh
Q 037413 267 KFP-----------KVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLG 335 (530)
Q Consensus 267 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
... +.++..+++| .+...+...+.+.....+...+..|+... |+++...|.+-+...+.++.|.++.
T Consensus 236 ~~~~~~~~~~~~~~~~w~~Y~~q~-vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~ 313 (432)
T PF06963_consen 236 SILKRLWNPLRTIIRGWRTYFRQP-VFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVY 313 (432)
T ss_pred hHHHHHHHHHHHHhccHHHHHhCH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122334444 44445555555555566677788888885 9999999999999999999999999
Q ss_pred hHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc---HH---HHHHHHHHHHHHhhhhhcccccc-ccccccccc
Q 037413 336 GLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST---LP---LSILSMILFSITTQAACGATFGI-IPFISRRSL 408 (530)
Q Consensus 336 g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 408 (530)
.++.+|+|..+ ...+.+..-..+..++...+....+ .. .+..+.++.=+|.-+.--...-+ -+.+|+++|
T Consensus 314 p~l~~riGlvr---~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 314 PWLMKRIGLVR---AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER 390 (432)
T ss_pred HHHHHHhcchh---hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence 99999999753 3333333222233333322222222 11 22222222223332222222223 457888999
Q ss_pred cchhhhhhhhhhHHHHhhhhh
Q 037413 409 GVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 409 g~~~g~~~~~~~~g~~~~~~~ 429 (530)
|+.+|+-+..+++...+.-.+
T Consensus 391 g~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 391 GAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999776554444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=105.86 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=95.0
Q ss_pred cccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH--h--hhhHHHHHH
Q 037413 82 AAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV--F--VSSARGYIA 156 (530)
Q Consensus 82 ~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~ 156 (530)
....+|. +.+++|.+..+.+...++..+...+++++.|+++||+|||+.+.++.++.++..+... . .++....+.
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG 341 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3344555 5567899999999988888888889999999999999999988777665443332211 1 223332222
Q ss_pred HHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhh-hhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 037413 157 ARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNM-GGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCL 234 (530)
Q Consensus 157 ~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~ 234 (530)
.-.+.+++.+. ......++.|++|++.|+.++|+.....++ .....+.+.+. +...+ .|...+++.++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~----l~~~g-----~~~~~~~~~~~~ 412 (432)
T PRK10406 342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS----LKSIG-----METAFFWYVTLM 412 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH----HHHhC-----CCcHHHHHHHHH
Confidence 22222233333 344567889999999999999998665443 12224443332 22111 365666666555
Q ss_pred HHHHHHHHHH
Q 037413 235 HVIMGILVLT 244 (530)
Q Consensus 235 ~~~~~~~~~~ 244 (530)
.++..+..++
T Consensus 413 ~~i~~~~~~~ 422 (432)
T PRK10406 413 AVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHH
Confidence 5555554444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-06 Score=86.18 Aligned_cols=280 Identities=11% Similarity=-0.000 Sum_probs=163.7
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCC-----ChhhHHHHHHHHHHHHHHh-hhhhHHHhhhhCCchhhHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNL-----IKTDIGNAGIASVSGSIFS-RLVMGAVCDLLGPRYGCAFL 134 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~ 134 (530)
.++.+....+.+++..+..+. +-.++|.+.+ +...+.++.+...+..++. .++.+++++|++|++++-+.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~ 80 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTV 80 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHH
Confidence 444555555555544444333 4456777765 3357888888887777766 89999999999999998888
Q ss_pred HHHHHHHHHHHHhh----h---------------------------hHHHHHHHHHHHHhhhhh-hh-hHHHHHhhhccC
Q 037413 135 IMLSAPTVFSMVFV----S---------------------------SARGYIAARFMIGFSLAT-FV-SCQYWMSTMFNG 181 (530)
Q Consensus 135 ~~~~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~-~~-~~~~~i~~~~~~ 181 (530)
...+.+..+++++. + +.|...+..+...+-... .. .-..+..|.++.
T Consensus 81 ~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~ 160 (472)
T TIGR00769 81 ISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI 160 (472)
T ss_pred HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 87777777776654 1 123333333444444443 33 446889999999
Q ss_pred CcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHHHHHHHHHHhccCCCCCCc---
Q 037413 182 KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR----IAFFAPGCLHVIMGILVLTLGQDLPDGNL--- 254 (530)
Q Consensus 182 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr----~~f~~~~~~~~~~~~~~~~~~~~~p~~~~--- 254 (530)
+|-.|..++...+.++|..+++.+...+........ .+...|. +.+.+.++.+++...+..++-+....+++
T Consensus 161 ~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (472)
T TIGR00769 161 DEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLG-PGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYN 239 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 999999999988888888777765555543211100 1112452 34444444444433333333222211111
Q ss_pred cccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHhh
Q 037413 255 NTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTA---GVIAATFGMANIFA 331 (530)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~ 331 (530)
.+.++++++++.+..+.++.++++|.++.+++...+.......+....-..+.+.+--+.+.. |.+....++..++.
T Consensus 240 ~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~ 319 (472)
T TIGR00769 240 PALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTM 319 (472)
T ss_pred hhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112233355668999999999988887777666554444443334444455443222222 23334455566666
Q ss_pred hhhhhHhhhhccCC
Q 037413 332 RPLGGLMSDMAARP 345 (530)
Q Consensus 332 ~~~~g~l~dr~~~r 345 (530)
+++.+++.+|+|-+
T Consensus 320 ~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 320 MLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHhhHH
Confidence 66778888888754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=111.16 Aligned_cols=131 Identities=21% Similarity=0.245 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhh-hhhHHHHHhhhcc
Q 037413 104 GIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSA--RGYIAARFMIGFSLAT-FVSCQYWMSTMFN 180 (530)
Q Consensus 104 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~ 180 (530)
..+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+. ++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556677888999999999999999999999999888887776543 4555556666666664 6777899999999
Q ss_pred CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 181 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
++.|+.++|+.+....+|..++|.+.+ +... ++..++++.+...++.+++.+++
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGEK----------WLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH----------HHhhHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988887766 3322 67788888888877776666544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=100.93 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
.+.+++.|+..+.....++..+|. ++++|+.++.+.|.+...+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~ 299 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA 299 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence 455667777777776777766776 6789999999999999999999999999999999999999999999999998888
Q ss_pred HHHhh-------hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 144 SMVFV-------SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 144 ~~~~~-------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
+.++. .+...+++.-+..++..|. ...+..++..++++ +-|.+.|+....+++|...-|...+...+..
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t-- 376 (417)
T COG2223 300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-- 376 (417)
T ss_pred HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc--
Confidence 87765 3444444444444444442 34555666777765 7899999999999999866666555554443
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 037413 216 AGATPFTAWRIAFFAPGCLHVIMGILVLTLG 246 (530)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 246 (530)
+ .+...|++...+.+++.+..+...
T Consensus 377 -g-----~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 377 -G-----SYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred -c-----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 599999999988888877666553
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=99.67 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=121.8
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-
Q 037413 89 IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT- 167 (530)
Q Consensus 89 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~- 167 (530)
-+.++|++..+...+.....+..+++++++|++.||+|.|+++.+++++..+.++..-+...-..+.++-.+.|...|.
T Consensus 279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence 3459999999999999999999999999999999999999999999999998888887777767777888999999996
Q ss_pred hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 037413 168 FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVI 237 (530)
Q Consensus 168 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (530)
...+.++.++..|+++-++.+|++......+..+||++.+.+.+..+ +-|..+....++.++
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--------~~r~g~~~i~vll~i 420 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--------SSRAGVLSIIVLLLI 420 (438)
T ss_pred HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--------chhhHHHHHHHHHHh
Confidence 78889999999999999999999999999999888888777777652 456666666544333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-09 Score=103.31 Aligned_cols=152 Identities=13% Similarity=0.022 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC
Q 037413 293 GIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA 372 (530)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (530)
..+..+...+|.+. +++|.+..+.+++.+.+.++..++.+..|+++||+|||+ .+.................
T Consensus 5 ~~~~~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~-------~~~~~~~~~~~~~~~~~~~ 76 (368)
T TIGR00903 5 AIWVTFSPVLSLVA-EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW-------FLFGSLATFAAAAGRLLDP 76 (368)
T ss_pred HHHHHHHhhHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHHHHHHh
Confidence 34455555666554 558999999999999999999999999999999999873 3322222222222222222
Q ss_pred CcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHH
Q 037413 373 STLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVC 451 (530)
Q Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 451 (530)
++...+++.-++.|++.+...+......+..|+++|+++.++.+....+|..+++.+.+. .+..+++..+...+.+.++
T Consensus 77 ~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~ 156 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA 156 (368)
T ss_pred ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 467777788888888877543333333567888999999999999999999999888766 4456666666554544444
Q ss_pred H
Q 037413 452 C 452 (530)
Q Consensus 452 ~ 452 (530)
.
T Consensus 157 ~ 157 (368)
T TIGR00903 157 G 157 (368)
T ss_pred H
Confidence 3
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=107.48 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=99.5
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhh-hhhHHH
Q 037413 96 IKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV-SSARGYIAARFMIGFSLAT-FVSCQY 173 (530)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (530)
+..+.+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+. .+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888899999999999999999999999999998888887777665 4667778888899999885 677778
Q ss_pred HHhhhcc-------CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 174 WMSTMFN-------GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 174 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
+++|..+ ++++|.++|+.+....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888764 456799999999999999999999888887765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=119.95 Aligned_cols=147 Identities=18% Similarity=0.075 Sum_probs=121.8
Q ss_pred hHHHHHhcCCChh-hHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 037413 86 VPIIRDNLNLIKT-DIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 86 ~~~~~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 164 (530)
.+.+.+.+|.+.. +.+++.+...++.+++.++.|++.||+++|+++.++.++.+++.++..+..+++.++++.++.|++
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3446678999998 999999999999999999999999999999999999999998888888888999999999999999
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 240 (530)
.+. .+...+++.+.+|+++||+++++.+....+|..+++.+++.+.... .++...|++.+.+.++..+
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~ 404 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG--------LSPAGLFYLIALVTLIGTL 404 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHHH
Confidence 996 6677899999999999999999999998898887777666554320 1566667666665544433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=100.51 Aligned_cols=147 Identities=9% Similarity=0.069 Sum_probs=126.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHH
Q 037413 96 IKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYW 174 (530)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~ 174 (530)
+...+|.+.++..+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+. ..+...|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999996 7788899
Q ss_pred HhhhccCCcchhhHhH-hhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCC
Q 037413 175 MSTMFNGKIIGLVNGT-AAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPD 251 (530)
Q Consensus 175 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~ 251 (530)
+.+.+|++-.+....+ .+...++|..+.+.+++.+.+.+ |.+..|++.+.+.++..++..+.+++.++
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~---------G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI---------GFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc---------CcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 9999998877777766 46777888988888999999988 99999999999999889988888766443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.4e-09 Score=100.45 Aligned_cols=162 Identities=13% Similarity=0.216 Sum_probs=129.2
Q ss_pred cchHHHHHhcC-CChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh-hhHHHHHH----H
Q 037413 84 PLVPIIRDNLN-LIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV-SSARGYIA----A 157 (530)
Q Consensus 84 ~~~~~~~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~ 157 (530)
...+..-++.| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+..++ .
T Consensus 228 ~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~ 307 (400)
T PF03825_consen 228 TFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLG 307 (400)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 33455566777 677788888888888999999999999999999999999999999999888887 55544333 3
Q ss_pred HHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhh-hhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 037413 158 RFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGW-GNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235 (530)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (530)
..++|+..+. +.++..++.+..|++.|+++.+++.+. .++|..+|..++|.+.+..... +...|...+.+.+.+.
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~---~~~~~~~~~~v~a~~~ 384 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR---GMFDWSAVFLVFAVMA 384 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch---hhhhHHHHHHHHHHHH
Confidence 4579999996 788899999999999999999998774 5799999999999998876321 2235777777787777
Q ss_pred HHHHHHHHHhccC
Q 037413 236 VIMGILVLTLGQD 248 (530)
Q Consensus 236 ~~~~~~~~~~~~~ 248 (530)
++..++.+++.||
T Consensus 385 ~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 385 LVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHhhccC
Confidence 7777766666554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=9e-09 Score=101.27 Aligned_cols=145 Identities=8% Similarity=0.073 Sum_probs=112.8
Q ss_pred hHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 037413 86 VPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIML-SAPTVFSMVFVSSARGYIAARFMIGFS 164 (530)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~ 164 (530)
.|.+.+++|.+..+.+++.+.+.++..++.++.|++.||.+ |+.+..+.++ .....++....++.+.+.+..++.|++
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999964 4444444444 444445555667788888899999999
Q ss_pred hhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 037413 165 LAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGIL 241 (530)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 241 (530)
.+. .+...+++.+..| ++++++.++.....++|..+|+.+++.+.+.. |++..++..+++.++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~---------g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI---------GLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ChhhHHHHHHHHHHHHHHH
Confidence 886 5666678888876 45678888888888899999999999888765 8898888887766555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-07 Score=97.87 Aligned_cols=160 Identities=13% Similarity=0.016 Sum_probs=121.4
Q ss_pred cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHHHHHHHHHHhhhh--------HHHH
Q 037413 84 PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLSAPTVFSMVFVSS--------ARGY 154 (530)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l 154 (530)
.+...+.+.+|.+.++...+...+....-+..+++|.++|++ |+++.+.++.++..+|.++.+++.. ....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 344556777999999999998888888889999999999995 9999999999999999988876421 2335
Q ss_pred HHHHHHHHhhhhh-hhhHHHHHhhhccCCc---chhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHH
Q 037413 155 IAARFMIGFSLAT-FVSCQYWMSTMFNGKI---IGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFA 230 (530)
Q Consensus 155 ~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (530)
+++-.+..+|.|+ -+...+...|.+++++ |-..+.++..+.++|..+++.+.+.+....... ....+|...|.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f--g~~~~~~~aF~i 166 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF--GCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCcchHHHHHH
Confidence 5667777788886 5677789999987543 566788888888899888887777665432110 112379999999
Q ss_pred HHHHHHHHHHHHHHh
Q 037413 231 PGCLHVIMGILVLTL 245 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (530)
.++..++..++....
T Consensus 167 ~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 167 PAILMILALIVFMAG 181 (654)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998888776665544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=100.32 Aligned_cols=147 Identities=11% Similarity=0.092 Sum_probs=104.8
Q ss_pred hHHHHHhcCCChhhHHHHHHHH-HHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHH
Q 037413 86 VPIIRDNLNLIKTDIGNAGIAS-VSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM---VFV-SSARGYIAARFM 160 (530)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~-~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l 160 (530)
.+.+.+++|+++++++++.+.. .++..++.+++|++.||+|+|+.+.++.++.++..+.. ++. ++.+.+++.-++
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3457778999999999998665 45688999999999999999998887777666554433 343 456666655544
Q ss_pred ----HHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 037413 161 ----IGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235 (530)
Q Consensus 161 ----~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (530)
.|++.+. ......++.+.+|.+++ ++.+...++|..+++.+++.+.+.. ||+..|.+.++++
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~---------G~~~~f~~~~~~~ 379 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAY---------GWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh---------ChHHHHHHHHHHH
Confidence 4455554 45556777777776554 4444445677776667788888887 9999999998888
Q ss_pred HHHHHHHHHh
Q 037413 236 VIMGILVLTL 245 (530)
Q Consensus 236 ~~~~~~~~~~ 245 (530)
++..++.+..
T Consensus 380 ~~~~~~~~~~ 389 (402)
T PRK11902 380 LPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHH
Confidence 7766655444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.7e-09 Score=101.33 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc
Q 037413 292 LGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR 371 (530)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
..........+|.+. +.+|.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+..+..+....
T Consensus 21 ~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-------~~~~~~~~~~~~~~~~~~ 92 (394)
T PRK11652 21 QMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-------VILVGMSIFILGTLVALF 92 (394)
T ss_pred HHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-------HHHHHHHHHHHHHHHHHH
Confidence 333333334455554 558999999999999999999999999999999999984 555555555555555555
Q ss_pred CCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHH
Q 037413 372 ASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
.++.+..++..++.|++.+...+....+.. ..++++++.+.++.+....++..++|.+.+. .+..+++..+...++.
T Consensus 93 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~ 171 (394)
T PRK11652 93 AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL 171 (394)
T ss_pred HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 677777777777788777665555555543 4566788888999888888888999988776 3445555555544433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=96.83 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhhccccccchHHHHH---hcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 67 LSWLSFFTCFVSTFAAAPLVPIIRD---NLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
+..+..+.............+.+.+ .+|+++++.+...+.+..+..++.++.+++.||+|+|+.+.++.++.+++.+
T Consensus 144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333444333 3699999999999999999999999999999999999999888888888777
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 144 SMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
+....++...+ .+-++.|++.+. +|...+...+.++++ .+.+.++. ....+|..+.|.+.+.+.+..
T Consensus 224 l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~--------- 291 (310)
T TIGR01272 224 GAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL--------- 291 (310)
T ss_pred HHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc---------
Confidence 66665554333 355678899885 888888888887753 45666665 456688888888777777765
Q ss_pred chhHHHHHHHH
Q 037413 223 AWRIAFFAPGC 233 (530)
Q Consensus 223 ~wr~~f~~~~~ 233 (530)
|.+..|++..+
T Consensus 292 g~~~a~~v~~~ 302 (310)
T TIGR01272 292 GIQLAFALPVP 302 (310)
T ss_pred cchHHHHHHHH
Confidence 78888875543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-09 Score=102.91 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHH
Q 037413 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLS 378 (530)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (530)
...+|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+..+.++..++....++.+..
T Consensus 11 ~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 11 LPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-------VILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred hccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-------HHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3456666654 8999999999999999999999999999999999984 5666666666666666666777777
Q ss_pred HHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHH
Q 037413 379 ILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMI 449 (530)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 449 (530)
.+..++.|++.+...+...+++. ..++++|+++.++.+....+|..++|.+.+. .+..++...+...+...
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 77788888888777777777754 5677889999999999999999999998766 34445544444444333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-09 Score=100.61 Aligned_cols=131 Identities=12% Similarity=0.095 Sum_probs=102.6
Q ss_pred cccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 037413 82 AAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFM 160 (530)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (530)
.....|.+.+++|.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++.+... .-++
T Consensus 216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 33456776677899999999999999999999999999999999 567777788888888877777665433322 4567
Q ss_pred HHhhhhh-hhhHHHHHhhhcc-CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQYWMSTMFN-GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
.|++.+. ++.....+.+..+ +++++...++.+....+|..++|.+.+.+.+..
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999886 6666666665554 456788899988888888889998888888765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-09 Score=105.92 Aligned_cols=174 Identities=17% Similarity=0.265 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhC--CchhhHHHHHHHHHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLG--PRYGCAFLIMLSAPT 141 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~ 141 (530)
.++...+...+..+........+|...++++.++.+.+.+.++..+...++.+..|.++|+.. ++.+..+++++.+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 455555666666666667777889999999999999999999999999999999999999988 556777888888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhh-HHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCC
Q 037413 142 VFSMVFVSSARGYIAARFMIGFSLATFVS-CQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATP 220 (530)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 220 (530)
.+.+++.++++.++..-++.|++.|.+.. ...++.|....++-..+.|+.....+++.++|+.+.+.+.+...
T Consensus 379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg------ 452 (509)
T KOG2504|consen 379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG------ 452 (509)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC------
Confidence 88999999999999999999999998554 44688999999999999999999999999999988886666541
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 221 FTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
+|...|+..++..++.++++++.
T Consensus 453 --~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 453 --NYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred --CeeeehhhcChHHHHHHHHHHHh
Confidence 59999999999888877666655
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.2e-09 Score=116.03 Aligned_cols=150 Identities=9% Similarity=-0.036 Sum_probs=118.4
Q ss_pred chHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh---------------
Q 037413 85 LVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV--------------- 148 (530)
Q Consensus 85 ~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------- 148 (530)
..|. +.+.+|.+..+.|++.+++.++.+++.++.|++.|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 3454 456689999999999999999999999999999999888777777766666666544443
Q ss_pred -----hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCC
Q 037413 149 -----SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFT 222 (530)
Q Consensus 149 -----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 222 (530)
++.+.++++.++.|++.+. .+...+++.+.+|++.||+++|+.+....+|..+++++++.+.... .
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--------~ 398 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--------F 398 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--------c
Confidence 6778888899999999996 6777899999999999999999999999999988888777765321 1
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 037413 223 AWRIAFFAPGCLHVIMGILV 242 (530)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~ 242 (530)
++...+++.+++.++.+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~ 418 (1140)
T PRK06814 399 SIPWIILFIALANLIVAILI 418 (1140)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 66777766666555444433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-08 Score=98.22 Aligned_cols=148 Identities=11% Similarity=-0.057 Sum_probs=110.5
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 037413 87 PIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLA 166 (530)
Q Consensus 87 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 166 (530)
+.+++.+|.++.+.|++.+...++..+++++.+++.||+++|+++..+. +.++..++.++.++++.+++..++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 3466778999999999999999999999999999999999998888875 445555556667788878888889999988
Q ss_pred h-hhhHHHHHhhhccCCc-chhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 037413 167 T-FVSCQYWMSTMFNGKI-IGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLT 244 (530)
Q Consensus 167 ~-~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 244 (530)
. .++..+.+.+..|++. +|++.++.+...++|..++..+.+.+... |-|..+++.+...++...+.+.
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL----------GVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHH
Confidence 6 5566677777655544 69999999999999998888776655322 5555555544433444444433
Q ss_pred h
Q 037413 245 L 245 (530)
Q Consensus 245 ~ 245 (530)
+
T Consensus 379 ~ 379 (393)
T PRK11195 379 W 379 (393)
T ss_pred H
Confidence 3
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=99.00 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=105.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 037413 306 FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILF 385 (530)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (530)
+.+.++.+..+.++..+++.++..++.++.|+++||+|||+ .+..+..+.+++.++....++.+.+++.-++.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~ 114 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-------VLITGALIFTLACAATLFTTSMTQFLIARFIQ 114 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999984 55566666666666666677888778877888
Q ss_pred HHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHHH
Q 037413 386 SITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIVC 451 (530)
Q Consensus 386 g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 451 (530)
|++.+...+..+.++. ..++++++++.++.+....++..++|.+.+. .+..+++..++..++..++
T Consensus 115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i 182 (413)
T PRK15403 115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLI 182 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8877655555555554 4566788899999999999999999988766 4445666666555444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-08 Score=92.83 Aligned_cols=125 Identities=12% Similarity=0.141 Sum_probs=94.2
Q ss_pred cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh----hCCchh-hHHHHHHHHHHHHHHHhhhhHHH-----
Q 037413 84 PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL----LGPRYG-CAFLIMLSAPTVFSMVFVSSARG----- 153 (530)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~----- 153 (530)
...+++..++|++....+.+-....+...+.+++.|..+|| |||||. +..+.+..+++.++..++.++..
T Consensus 53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred ccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 34556677899999999999888899999999999999998 786654 55666777788888887755433
Q ss_pred ------------HHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchh-hHhHhhhhhhhhhhhHHhHHHH
Q 037413 154 ------------YIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGL-VNGTAAGWGNMGGGITQLLTPF 208 (530)
Q Consensus 154 ------------l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~ 208 (530)
++++-.+.=++.-. ..++.+++.|...++++.+ +++.+..+..+|..+|..++++
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 22233333333332 5678899999998777666 9999999999999999887763
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-08 Score=99.66 Aligned_cols=129 Identities=9% Similarity=-0.026 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc
Q 037413 292 LGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR 371 (530)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
.+..+.+..+.+ .+.+.+|++..+.+.+..+.. ......++.|++.||+|+|+ ++.++.++.+++.++...
T Consensus 40 ~g~~y~fsv~s~-~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~-------vllig~ll~~iG~ll~al 110 (591)
T PTZ00207 40 TSFMYAFNLISG-AMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP-------IFVLSMTVFCLGTLLFAL 110 (591)
T ss_pred HHHHHHHHHHHH-HHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHH
Confidence 344445554455 456779999999998876633 33345667899999999983 666776666666665554
Q ss_pred C------CcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 372 A------STLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 372 ~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
. .+.+.+++..++.|++.+...+.....+....|++||.+.|+......+|+++.+.+
T Consensus 111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 111 TFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred HhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 467777777778888876666655555444457889999999999999999764444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=96.13 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCCHHH-HHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHH
Q 037413 301 VIAEYFFDRFNLKLHT-AGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSI 379 (530)
Q Consensus 301 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (530)
+...++.+.+|++..+ .|.+.+.+..+..+..+.+|+++||+|.|+ ++.++.+.-++..++..+.++...+.
T Consensus 47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-------vL~l~~l~Wsl~t~L~~fa~Sl~~L~ 119 (511)
T TIGR00806 47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-------VLVLQALSFVCVWLLLLLGTSVWHMQ 119 (511)
T ss_pred HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777789999999 999999999999999999999999999983 77777777777777777777888888
Q ss_pred HHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcc
Q 037413 380 LSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTA 439 (530)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 439 (530)
+.-+++|++.+... ....++ .-+|+++|+++.|+.+....+|.++++++.+....+++.
T Consensus 120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr 179 (511)
T TIGR00806 120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWI 179 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999998888 666664 588999999999999999999999999997764344443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-06 Score=83.12 Aligned_cols=308 Identities=12% Similarity=0.071 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhc
Q 037413 101 GNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMF 179 (530)
Q Consensus 101 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~ 179 (530)
+.+.-+-.+...+..+.+-++.+|+..+.=+.+..++.+++.++.++++|.+.=+++-++.+++.|. -.....+ ...+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 4466666677788888889999999866666777778888999999999999989999999999985 4444454 4455
Q ss_pred cCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc-cccc
Q 037413 180 NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL-NTLQ 258 (530)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~ 258 (530)
++ ...+-+.++.+.++++|+..-..+.. . + . +-|..+++...+.++..+..++.++.++.... .+.+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~---g---~-s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~ 208 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-L---G---L-SPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESE 208 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-h---C---c-CHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccC
Confidence 54 34566666666666655543333322 2 0 0 34778888877777666666666654332110 0000
Q ss_pred ------c-----CCCCC--CCChhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCC-HHHHHHHHH
Q 037413 259 ------K-----KGDVP--TDKFPKVLWYAI-TNYRTWIFVLLYGMSLGIELTIDN-VIAEYFFDRFNLK-LHTAGVIAA 322 (530)
Q Consensus 259 ------~-----~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~-~~~~~~~~~ 322 (530)
+ +..+. +...+..+++.+ +-+..+..++-.+..+...+.+++ ..+.........+ ..+..++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~ 288 (402)
T PF02487_consen 209 SEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQL 288 (402)
T ss_pred CCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHH
Confidence 0 00000 001111122111 112222233334444444444433 2333222211222 234445555
Q ss_pred HHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHH---hhcCCcHHHHHHHHHHHHHHhhhhhcccccc
Q 037413 323 TFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCIC---LGRASTLPLSILSMILFSITTQAACGATFGI 399 (530)
Q Consensus 323 ~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 399 (530)
.+.++-++++--..++ |+ ++++++.+...+-.+.+++ +.+.++.|...+.++..|+..|..+...+..
T Consensus 289 ~YQ~GVFISRSS~~~~--ri-------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 289 LYQLGVFISRSSLPFF--RI-------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHhhhhcceeee--eh-------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666666665443222 22 1234444444333333222 2234667777777777788777777776665
Q ss_pred -ccccccccccchhhhhhhhhhHHHHhhhhhh
Q 037413 400 -IPFISRRSLGVISGLTGAGGNFGSGLTQLLF 430 (530)
Q Consensus 400 -~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 430 (530)
.++.++++|..++|.....-.+|..++..+.
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4588899999999999998888888877774
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=87.82 Aligned_cols=320 Identities=13% Similarity=0.134 Sum_probs=170.1
Q ss_pred ccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 037413 81 AAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFM 160 (530)
Q Consensus 81 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (530)
..+|.+-.+-..++....++|.+.-...-..++...+.|-++|+-|||+..+.-++.+.++++ .-.++.|-.++++|++
T Consensus 55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~L 133 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVL 133 (454)
T ss_pred hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhh
Confidence 344555567778899999999998888888888999999999999999976665555544443 2346889999999999
Q ss_pred HHhhhhh-hhhHH-HHHhhhccCCcc--hhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQ-YWMSTMFNGKII--GLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHV 236 (530)
Q Consensus 161 ~G~~~~~-~~~~~-~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~ 236 (530)
.|+..+. +.+-- -++.|.-.++.- .....-+.=...+|..+-.+++++..+.+...- +. |--.+|-..+.+..
T Consensus 134 GGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~--sl-GPVAPFdAAacfLa 210 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF--SL-GPVAPFDAAACFLA 210 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cc-CCCCchHHHHHHHH
Confidence 9999995 66655 456776533211 111111111112333333444444444432110 00 33444544433322
Q ss_pred HHHHHHHHhccCCCCCCccccccCCCCCCCCh----hHHHHHhhhchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Q 037413 237 IMGILVLTLGQDLPDGNLNTLQKKGDVPTDKF----PKVLWYAITNYRTWIFVLLYGMSLGIELTID-NVIAEYFFDRFN 311 (530)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g 311 (530)
+...+.+--..|.-. ...+.+++ +...+.+..++++.++.....+.-+..+.+. .|.|..--+..+
T Consensus 211 igmAvil~~W~ENyg---------dps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~ 281 (454)
T KOG4332|consen 211 IGMAVILSSWSENYG---------DPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE 281 (454)
T ss_pred HHHHHHHhhhhhccC---------ChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc
Confidence 222222211111110 11111222 2233445566776666555544444433322 233321111112
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHH--hhc--C---CcHHHHHHHHHH
Q 037413 312 LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCIC--LGR--A---STLPLSILSMIL 384 (530)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~--~---~~~~~~~~~~~~ 384 (530)
. --|.+++.+.+.+++|.-+..++..|-..|. . ..+.+.+.+....+.+ ... . .++....+.+++
T Consensus 282 i---PhGfiFatFMlASmLGSSla~Rl~s~s~~~v---e--~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~ 353 (454)
T KOG4332|consen 282 I---PHGFIFATFMLASMLGSSLASRLLSRSSPKV---E--SYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCL 353 (454)
T ss_pred C---CchhHHHHHHHHHHHhhHHHHHHHhcCCccc---c--hHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHH
Confidence 2 2356777777777777766666655543331 1 1122222222222222 111 1 134455666777
Q ss_pred HHHHhhhhhcccccc-ccccccccccchhhhhhhhhhH
Q 037413 385 FSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNF 421 (530)
Q Consensus 385 ~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~ 421 (530)
+-...|..+|.++-+ ...+|.+.|++.+-....--++
T Consensus 354 ~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 354 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred HHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence 777788888888777 4467777888755544443333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=99.63 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=94.3
Q ss_pred cccchHHHHHhcCCChhhHHHHHHHHH-HHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh-----------h
Q 037413 82 AAPLVPIIRDNLNLIKTDIGNAGIASV-SGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV-----------S 149 (530)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~ 149 (530)
.....|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+. +
T Consensus 228 ~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T TIGR00901 228 ATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFP 307 (356)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 334455555669999999998887665 6788999999999999999999998888888777655543 4
Q ss_pred hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhh
Q 037413 150 SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGN 196 (530)
Q Consensus 150 ~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 196 (530)
+++.++.+.++.+++.+. .+...+++.|.+|+++||+.+|+.++..+
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 567788889999999995 78888999999999999999999876554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-08 Score=95.29 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh---cCCcH
Q 037413 299 DNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG---RASTL 375 (530)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 375 (530)
...+| .+++.+|.+..+.+++.+...++..++.+..|++.||+|||+ .+..+..+.+++.++.. ..++.
T Consensus 23 ~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-------~~~~g~~l~~~g~~l~~~~~~~~~~ 94 (410)
T TIGR00885 23 NPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-------GILLGLFLYALGAFLFWPAAEIMNY 94 (410)
T ss_pred HHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHHHHHHHHHHHHhhccH
Confidence 34455 457779999999999999999999999999999999999984 66666666666555532 23567
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 376 PLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+...+..++.|++.+...+....++. ..+++++++..++.+....+|..++|.+.+.
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888889998888887777754 5566788999999999999999999988655
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-07 Score=84.39 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=124.2
Q ss_pred hhhhccccccchHHHHHhcCCCh--hhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhh--
Q 037413 75 CFVSTFAAAPLVPIIRDNLNLIK--TDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSS-- 150 (530)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-- 150 (530)
...+........+.+..+++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
T COG0477 14 LGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG 93 (338)
T ss_pred HHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence 33555566667788888887766 58899999999999999999999999999998888888776666677777766
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHhhhccC-CcchhhHhHhhh-hhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHH
Q 037413 151 ARGYIAARFMIGFSLAT-FVSCQYWMSTMFNG-KIIGLVNGTAAG-WGNMGGGITQLLTPFIYELIRRAGATPFTAWRIA 227 (530)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (530)
.+.+++.|+++|++.+. .+....++.+++++ ++|+...+.... ...+|..+++.+++.+... ...+||+.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 166 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-------LLWGWRAA 166 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcchHHH
Confidence 89999999999999996 78888999999987 678888888877 4667777777666555544 12289997
Q ss_pred HHHHHHHHHHH
Q 037413 228 FFAPGCLHVIM 238 (530)
Q Consensus 228 f~~~~~~~~~~ 238 (530)
|.+........
T Consensus 167 ~~~~~~~~~~~ 177 (338)
T COG0477 167 FLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHH
Confidence 77776655443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=93.49 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
..+.+.++.............|.+ ++.+|.++.+.++..+.+.++..++.++.|++.||+|||+ .+..+..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-------~l~~g~~~ 100 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-------GIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHH
Confidence 344444444444555555666765 7789999999999999999999999999999999999994 66666666
Q ss_pred HHHHHHHh---hcCCcHHHHHHHHHHHHHHhhhhhcccccccccccccc-ccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 362 GGIFCICL---GRASTLPLSILSMILFSITTQAACGATFGIIPFISRRS-LGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 362 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
..++.++. ...++.+.+.+..++.|++.+...+....++.+.++++ ++...++.+....+|..++|.+.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 34677888888889999999988888888765566554 4457888899999999999888543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-08 Score=86.81 Aligned_cols=147 Identities=13% Similarity=0.165 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH-HH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS-AP 140 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~-~~ 140 (530)
...+.++++++.+..+-....++. .+++.||+|+...+.+.+....-.++..++.|.++||+|++.+.+.+..+. .+
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~ 343 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL 343 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence 345556666776666655555433 478999999999999999988889999999999999999997766554443 33
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhh-HHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHH
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLATFVS-CQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYEL 212 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 212 (530)
+-....| +++.=+.+..+.|+....... ....++...|+++.|.+.|..++..++|..+.+++++++.+.
T Consensus 344 ~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 344 GHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 3333333 334445667778888776443 457788888999999999999999999999999888877653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-08 Score=96.18 Aligned_cols=144 Identities=11% Similarity=0.023 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhh----ccCCCCCcchhHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDM----AARPFGMRGRLWNLYI 357 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~r~~~~~~~~~~~~ 357 (530)
..++...+..+..+.....+++.|+. .+|.+....+.+.....+.+++..++.|+++|| +|||+ ..+..
T Consensus 7 i~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr------p~il~ 79 (477)
T TIGR01301 7 LRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR------PFIAA 79 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH------HHHHH
Confidence 33344444445555555666777764 589999999999999999999999999999995 88875 23333
Q ss_pred HHHHHHHHHHHhhcCCcH-----------------HHHHHHHHHHHHHhhhhhcccccccc-ccccccc--cchhhhhhh
Q 037413 358 VQTLGGIFCICLGRASTL-----------------PLSILSMILFSITTQAACGATFGIIP-FISRRSL--GVISGLTGA 417 (530)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--g~~~g~~~~ 417 (530)
+.....+.+.++.+..+. +..++.+.+..++.....++..+++. ..|+++| +.++++.+.
T Consensus 80 g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 80 GAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 344444444444443221 22333344455566667777777755 5565543 679999999
Q ss_pred hhhHHHHhhhhhhhh
Q 037413 418 GGNFGSGLTQLLFFT 432 (530)
Q Consensus 418 ~~~~g~~~~~~~~~~ 432 (530)
..++|+.+++.+.+.
T Consensus 160 ~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 160 FMAIGNVLGYAAGAY 174 (477)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=94.70 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhh
Q 037413 311 NLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQ 390 (530)
Q Consensus 311 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 390 (530)
+.+...+|++.+.+.++..+..+..|.++||+||| ..+.+|.+..++...+.....++..++..=++.|++-+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk-------pvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg 136 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK-------PVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG 136 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 34567788999999999999999999999999999 47777777777777777777777444444566676654
Q ss_pred hhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhhc
Q 037413 391 AACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFTS 433 (530)
Q Consensus 391 ~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~ 433 (530)
..++..+++. .+++++|+.+++.++....+|-++||.+++..
T Consensus 137 -nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 137 -NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred -chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 3445566654 55678999999999999999999999998873
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-07 Score=82.39 Aligned_cols=359 Identities=10% Similarity=0.021 Sum_probs=187.8
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhh-----hhCCchhhH-
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCD-----LLGPRYGCA- 132 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~- 132 (530)
+.+++.+..+.+.+.+...-..... .+|.+.+.-|.|.++.+....++ ..+. .-+.|.++.| |+||||.-+
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~s-LKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPFS-LKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHHH-HHHHHHhhhHHHHHHhhccccceee
Confidence 3455667777788888877766666 88988888888888877643332 3333 4678899999 999887532
Q ss_pred HHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhhhhhh-hhHHHHHhhhccCCcchhhHhHhhhhhhhhhh
Q 037413 133 FLIMLSAPTVFSMVF-----------VSSARGYIAARFMIGFSLATF-VSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGG 200 (530)
Q Consensus 133 ~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 200 (530)
-+..+.+..+.+.+. .++...+...-++.-+..+.. .+.-.+.-.+..+++.|-+......+.+.|..
T Consensus 104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 233333333333332 133333333445555555553 34446666667778887777666555556655
Q ss_pred hHHhHHHHHHH--HHH--hcCCCCCCch---hHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHH
Q 037413 201 ITQLLTPFIYE--LIR--RAGATPFTAW---RIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLW 273 (530)
Q Consensus 201 ~~~~~~~~l~~--~~~--~~~~~~~~~w---r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 273 (530)
++..+.-.+-. +.. ...+....|. ..-.++.+.+.++...+..+.-+|.+++. .++.+...+...+.++
T Consensus 184 L~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~----~~e~~~~i~~~yk~l~ 259 (510)
T KOG3574|consen 184 LGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV----DEELELGIHESYKLLR 259 (510)
T ss_pred hhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh----hhhhhcCHHHHHHHHH
Confidence 54432111100 000 0010101111 12234445555555555555544444331 1222222233355677
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCC-CC---c
Q 037413 274 YAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPF-GM---R 349 (530)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~-~~---~ 349 (530)
++++-|.+..++......-..+.+-....+.-+.+ .|.+..+.+++. +..+...++.+++..|+...+ ++ .
T Consensus 260 ~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~----v~~~plqI~l~~~~gk~ta~~~pl~~~l 334 (510)
T KOG3574|consen 260 DVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIA----VPLVPLQIALPLYIGKWTAGPRPLNVFL 334 (510)
T ss_pred HHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeee----eehhhHHHhhhhhheeecCCCCcchHHH
Confidence 88888887777776666666666655556655555 699998877754 344444555566555554321 11 1
Q ss_pred chhHHHHHHHHHHHHHHHHhhc-CC---cHH--HHHHH---HHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhh
Q 037413 350 GRLWNLYIVQTLGGIFCICLGR-AS---TLP--LSILS---MILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGG 419 (530)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~-~~---~~~--~~~~~---~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~ 419 (530)
+..+.=+.+..+..+....... .. ... ..++. ..+.+......+...++..+ ..+|..-|+-+.+.|+..
T Consensus 335 ka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLs 414 (510)
T KOG3574|consen 335 KAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLS 414 (510)
T ss_pred HhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHH
Confidence 1111111111222222222111 11 111 11111 22223333333333444433 556788999999999999
Q ss_pred hHHHHhhhhh
Q 037413 420 NFGSGLTQLL 429 (530)
Q Consensus 420 ~~g~~~~~~~ 429 (530)
++|+-.-..+
T Consensus 415 nLGg~wp~tv 424 (510)
T KOG3574|consen 415 NLGGNWPGTV 424 (510)
T ss_pred HhcCCcHHHH
Confidence 9987554444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.1e-08 Score=96.16 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS 144 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 144 (530)
..+++..++............+.+.++ ++.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++
T Consensus 228 ~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 228 RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL 306 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence 334444444444444444445555444 5544 67788888999999999999999999999999999999999999999
Q ss_pred HHhhh--hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccC-------CcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 145 MVFVS--SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNG-------KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 145 ~~~~~--~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
..+.+ |.+.+++.-++.|++.+. +....++++|..+. ++.|..+|+......+|..++..+.+.+....+
T Consensus 307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 88886 999999999999999996 66777888887762 345888999999999999999988887776653
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=101.65 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=102.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCcHHHHHHHHHHHH
Q 037413 309 RFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLG--RASTLPLSILSMILFS 386 (530)
Q Consensus 309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 386 (530)
.++++..+.|++.+.+.++..++.++.|++.||+|+|+ .+..+.++.++..++.. ...+.+..++.-++.|
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 142 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW-------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQG 142 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 57889999999999999999999999999999999984 44444444444433332 2234556666777888
Q ss_pred HHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccC-CCcchhHHHHHHHHHH
Q 037413 387 ITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSR-HSTATGISLMGIMIVC 451 (530)
Q Consensus 387 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 451 (530)
++.+...+....++. ..|+++|+++.|+.+....+|.+++|.+.+. .+. .++...+.+.++..++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~ 210 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCA 210 (465)
T ss_pred HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHH
Confidence 888888888877754 6677899999999999999999999999776 444 3666666665554433
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-07 Score=83.55 Aligned_cols=333 Identities=12% Similarity=0.066 Sum_probs=213.8
Q ss_pred cchHHHH-HhcCCChhhHH-HHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 037413 84 PLVPIIR-DNLNLIKTDIG-NAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMI 161 (530)
Q Consensus 84 ~~~~~~~-~~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 161 (530)
.+.|.+. .+.++++.|+. -+.-...-.+.+.-++.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3444444 45667766644 233344445556666666789999999999988888888888888999999999999999
Q ss_pred HhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 037413 162 GFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGIL 241 (530)
Q Consensus 162 G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 241 (530)
|...+.-.+-++++-+..+|+++.++.|...+..-.|-.+|..++.++...- ..++...=.+.-.. ..++.+
T Consensus 106 G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-------~~sy~~LN~ISL~~-~~ia~~ 177 (433)
T KOG3810|consen 106 GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-------TLSYTTLNYISLAE-VTIAVL 177 (433)
T ss_pred ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc-------ccchhhhchhhHHH-HHHHHH
Confidence 9998888888899999999999999999987777777777766666655442 11333333333222 223333
Q ss_pred HHHhccCCCCCCc---ccccc-----CCCCCCCC-----------hhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037413 242 VLTLGQDLPDGNL---NTLQK-----KGDVPTDK-----------FPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVI 302 (530)
Q Consensus 242 ~~~~~~~~p~~~~---~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (530)
..+++|..+++.. .+.+. +....+.+ +++.+....+||++....+-..+..++++.+.++.
T Consensus 178 ~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~ 257 (433)
T KOG3810|consen 178 LALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYT 257 (433)
T ss_pred HHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHH
Confidence 4444555443321 00000 00001111 13345566788888777777777666777666655
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 037413 303 AEYFFDRFN-LKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILS 381 (530)
Q Consensus 303 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (530)
.....+... -...-.|..-++..+.++++.+..|.+--++.|. +-..+.++.+..+..++++..+.+.|+.++.
T Consensus 258 Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-----g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~ 332 (433)
T KOG3810|consen 258 QILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-----GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAG 332 (433)
T ss_pred HHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh-----hHHHHHHHHHHhhhhhhhhhcccceehhhhh
Confidence 554444321 1112234445566667777778888876555443 2235555566666667777788889999998
Q ss_pred HHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 382 MILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 382 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
.+++...+....++...- ..+...+.-|..+|+..+++-+-..+-..+
T Consensus 333 yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 333 YVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI 381 (433)
T ss_pred HHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE
Confidence 888887777666655444 457778889999999888777665554444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=100.07 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=98.2
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhh
Q 037413 89 IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV--SSARGYIAARFMIGFSLA 166 (530)
Q Consensus 89 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~ 166 (530)
+++.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+. .+++.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 344567665555555555567788899999999999999999999999888888777664 367777788889999988
Q ss_pred h-hhhHHHHHhhhccCC-------cchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 167 T-FVSCQYWMSTMFNGK-------IIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 167 ~-~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
. .+...++.+|..+.+ ++|...|+.+....+|..+|+.+.+.+.+..
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 677778888877643 3588899999999999999998888776654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-08 Score=101.83 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=94.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCC--------
Q 037413 302 IAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAS-------- 373 (530)
Q Consensus 302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 373 (530)
.-..++++++++..+.|++.+.+.++..++.++.+++.||.+||+ ++.++.++.+++.++....+
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-------~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-------VIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce-------EEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 333456779999999999999999999999999999999999985 33344444444433332110
Q ss_pred -------------------------------------------cHHHHHHHHHHHHHHhhhhhcccccccc-cccccccc
Q 037413 374 -------------------------------------------TLPLSILSMILFSITTQAACGATFGIIP-FISRRSLG 409 (530)
Q Consensus 374 -------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g 409 (530)
.+..+++.-++.|++.+..++...++++ .+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 1234556777888888888888888865 66788999
Q ss_pred chhhhhhhhhhHHHHhhhhhhhh
Q 037413 410 VISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 410 ~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
...|+.+....+|..+|+.+.+.
T Consensus 208 ~~~~i~~~~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 208 LYIGILESIAVFGPAFGYLLGSF 230 (633)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999888765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-09 Score=97.06 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
..+++...+.+.-.+.+...++. .++.++.++...|++...+.+...+..++.|++.||+.|+. ++.++..+
T Consensus 36 ~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-------v~~vG~~i 107 (493)
T KOG1330|consen 36 VILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR-------VIAVGIFI 107 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce-------EEeeHHHH
Confidence 34444444444444444443332 44668999999999999999999999999999999999984 66666666
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhhcc--CCCc
Q 037413 362 GGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFTSS--RHST 438 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~ 438 (530)
-.+..+...+...+|.+.++=.+.|+|.+...+...++++ .++.++|++++++.++...+|+.+|-....... ...+
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 6666666666677888888889999999999999999976 556679999999999999999888877766522 3347
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 037413 439 ATGISLMGIMIVCCTFPVA 457 (530)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~ 457 (530)
+.++...+++.+++.++..
T Consensus 188 r~af~~~avl~vi~~~L~~ 206 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVF 206 (493)
T ss_pred EEEEEeehHHHHHHHHHHH
Confidence 7888877777766665543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.1e-05 Score=72.51 Aligned_cols=283 Identities=11% Similarity=-0.007 Sum_probs=156.6
Q ss_pred CCcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCC---hhhHHHHHHHHHH-HHHHhhhhhHHHhhhhCCchhhHH
Q 037413 58 ASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLI---KTDIGNAGIASVS-GSIFSRLVMGAVCDLLGPRYGCAF 133 (530)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~ 133 (530)
++..++.+..+.+.++...+... ++-.++|.+.++ +..+.++-+...+ +.++..++.+++.+++.+.+++-+
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~ 97 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI 97 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 34455555555554444444332 233456666544 5567777777777 667888899999999999999988
Q ss_pred HHHHHHHHHHHHHhh---------hh-----------------------HHHHHHHHHHHHhhhhh-hh-hHHHHHhhhc
Q 037413 134 LIMLSAPTVFSMVFV---------SS-----------------------ARGYIAARFMIGFSLAT-FV-SCQYWMSTMF 179 (530)
Q Consensus 134 ~~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~~~-~~-~~~~~i~~~~ 179 (530)
-+..+....+++++. ++ .|..-+..++.=+=... .. .-.....|.+
T Consensus 98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit 177 (509)
T COG3202 98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT 177 (509)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888887763 11 12222222222222221 22 2246677888
Q ss_pred cCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh-cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc----
Q 037413 180 NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR-AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL---- 254 (530)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~---- 254 (530)
..+|-.|..++++.+.+++..++..+...+...... ........-+..+.+.++.++++..+..+.-+..++.+.
T Consensus 178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~ 257 (509)
T COG3202 178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLR 257 (509)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHH
Confidence 888889999999888888876665544443331100 000000013445555555555555555554444444332
Q ss_pred cccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHH-HHh
Q 037413 255 NTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVI---AATFGMA-NIF 330 (530)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~-~~~ 330 (530)
...++++++.+-+..+.++.+.++|.++.+++...++..+...+....-.-..+.+....+...+. ....++. .++
T Consensus 258 ~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~ 337 (509)
T COG3202 258 AKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVV 337 (509)
T ss_pred HhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 122223344455667888999999988888777666554444333333222333333333333332 2233333 344
Q ss_pred hhhhhhHhhhhccC
Q 037413 331 ARPLGGLMSDMAAR 344 (530)
Q Consensus 331 ~~~~~g~l~dr~~~ 344 (530)
...+++-+.+|.|-
T Consensus 338 ~~~~~s~~ir~~GW 351 (509)
T COG3202 338 FLFPGSNLIRRVGW 351 (509)
T ss_pred HHhhhHHHHHHhhH
Confidence 45566667666663
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.4e-08 Score=95.92 Aligned_cols=156 Identities=11% Similarity=0.013 Sum_probs=120.1
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHH
Q 037413 91 DNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFV----------SSARGYIAARFM 160 (530)
Q Consensus 91 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 160 (530)
+.+|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 5789999999999999999999999999999999999999999999999888664311 344455666788
Q ss_pred HHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMG 239 (530)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (530)
.+++.+. +.+...++.+..|++.+|...++..+..++|..+++.+++.+.+.+.... +.++.++...+...+.-+..
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~--~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC--DNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--ccccchHHHHHHHHHHHHHH
Confidence 9999885 77889999999999999999999999999999999999999888774111 11233444433333333333
Q ss_pred HHHHHhccC
Q 037413 240 ILVLTLGQD 248 (530)
Q Consensus 240 ~~~~~~~~~ 248 (530)
+...+++|+
T Consensus 439 l~~~~llP~ 447 (468)
T TIGR00788 439 LPLLHLLPR 447 (468)
T ss_pred HHHHHhCCC
Confidence 334446665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-07 Score=82.65 Aligned_cols=164 Identities=13% Similarity=0.155 Sum_probs=127.0
Q ss_pred hhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHHHHHHHHHHhhhhHHH
Q 037413 75 CFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLSAPTVFSMVFVSSARG 153 (530)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (530)
..+..+..-..+|.+..|-|+|..+.|++.+...+..+..++..-.+++|. ++|+..+...+++.++.+.+.+.+.-..
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~ 299 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP 299 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333445555678999999999999999999999999999999999999976 5888888888888888888877764433
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHhhhccC-CcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 037413 154 YIAARFMIGFSLAT-FVSCQYWMSTMFNG-KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAP 231 (530)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (530)
++- -+++|+|.|. ++.+...+.+..+. ++-+...++.|..+.+=...||.+.+.+.+... +|+.+....
T Consensus 300 ~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--------sw~~~~~~l 370 (395)
T COG2807 300 ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--------SWSAPLVLL 370 (395)
T ss_pred HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--------ChHHHHHHH
Confidence 333 4999999995 99999888887764 444667777776666666666666666665542 899999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 037413 232 GCLHVIMGILVLTLGQ 247 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~~ 247 (530)
+...+++.+..+..-|
T Consensus 371 ~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 371 ALATLLMLIFGLRAGR 386 (395)
T ss_pred HHHHHHHHHHHhhcch
Confidence 8888888777776633
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-08 Score=81.49 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=86.6
Q ss_pred HHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccc-c
Q 037413 323 TFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGII-P 401 (530)
Q Consensus 323 ~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~ 401 (530)
...++..++.++.+++.||++||+ ....+..+..+..+.....++.+......++.+++.+...+....+. +
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKP-------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456778888999999999999984 44455555555555555556777777778888888888777777774 4
Q ss_pred ccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHH
Q 037413 402 FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGI 447 (530)
Q Consensus 402 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 447 (530)
..++++|+++.++.+....+|..++|.+.+. .+..++...+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAI 125 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHH
Confidence 6677899999999999999999999999777 333444444444333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-08 Score=90.16 Aligned_cols=144 Identities=10% Similarity=0.074 Sum_probs=123.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHh
Q 037413 310 FNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITT 389 (530)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 389 (530)
.+-+..+.|++++...+.+++..++.|.+.||+|+| ..+++++.++....+++.+.++++..+++=.+-|+|.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~-------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK-------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGS 173 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc-------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhH
Confidence 355678899999999999999999999999999999 4777888888888889999999998889999999999
Q ss_pred hhhhcccccccc-ccccc-cccchhhhhhhhhhHHHHhhhhhhhhc-cCCCcchhHHHHHHHHHHHHHHHHHhh
Q 037413 390 QAACGATFGIIP-FISRR-SLGVISGLTGAGGNFGSGLTQLLFFTS-SRHSTATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 390 ~~~~~~~~~~~~-~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
+.......++.. .++.+ .|++++|+...+..+|-.+||.++|.. +..++...|.++++++++-..+..++.
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 999988888855 55555 579999999999999999999999884 457888899988888877776655544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.5e-08 Score=69.92 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred hhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHH
Q 037413 76 FVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYI 155 (530)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 155 (530)
...++.+.|++|.+++|.++|.++.|++.+...+||.+|++...++.++..+++.+..+++...+..+.+++.++++...
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 45688899999999999999999999999999999999999999999998899999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=91.63 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=131.9
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-
Q 037413 89 IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT- 167 (530)
Q Consensus 89 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~- 167 (530)
-.+|++..+.-.|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+..++..|.|+.+...+++|+..+.
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 3577887888888888888888899999999999999999999999999999999999999999999999999999996
Q ss_pred hhhHHHHHhhhccCCcchhhHhHhhh-hhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 037413 168 FVSCQYWMSTMFNGKIIGLVNGTAAG-WGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLG 246 (530)
Q Consensus 168 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 246 (530)
+.+..+|++...||+-|..+.++.+. ..++|-.+|.++++.+...+ +-|..|.+.++.+++.+++...+-
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---------g~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF---------GARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999988766 45688889999999988876 889999999988887776665553
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.8e-05 Score=73.27 Aligned_cols=284 Identities=12% Similarity=0.031 Sum_probs=152.8
Q ss_pred CCcchHHHHHHHHHHHHhhhhccccccchHHHHHhcC---CChhhHHHHHHHHHH-HHHHhhhhhHHHhhhhCCchhhHH
Q 037413 58 ASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLN---LIKTDIGNAGIASVS-GSIFSRLVMGAVCDLLGPRYGCAF 133 (530)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~ 133 (530)
.+..++.+..+.+.+++..+..... -.++|.+= .....+..+-....+ ...+...+..++++++++.+++-+
T Consensus 19 ~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~ 94 (491)
T PF03219_consen 19 HRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI 94 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3445555555555555544443222 22232221 134455565444344 344557788999999999998887
Q ss_pred HHHHHHHHHHHHHhh---------h----------------------hHHHHHHHHHHHHhhhhh-hh-hHHHHHhhhcc
Q 037413 134 LIMLSAPTVFSMVFV---------S----------------------SARGYIAARFMIGFSLAT-FV-SCQYWMSTMFN 180 (530)
Q Consensus 134 ~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~r~l~G~~~~~-~~-~~~~~i~~~~~ 180 (530)
.+..+.....++++. + +.|.+.+..++.-+-... .. .-..+..|.++
T Consensus 95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777766666665542 1 112222222222222222 22 23577889999
Q ss_pred CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHH----HHHHHHHHHHHHhccCCCCCC---
Q 037413 181 GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPG----CLHVIMGILVLTLGQDLPDGN--- 253 (530)
Q Consensus 181 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~----~~~~~~~~~~~~~~~~~p~~~--- 253 (530)
.+|-.+..+++..+.++|.++++.+...+..........+...|...+.... +.+++...+....-+...+.+
T Consensus 175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~ 254 (491)
T PF03219_consen 175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY 254 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 8898999999988888888777766555555111111122336764443222 222222222222222211111
Q ss_pred ccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHh
Q 037413 254 LNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTA---GVIAATFGMANIF 330 (530)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~ 330 (530)
....++++++++.+..+.++.++++|.+..+++...++......+....-..+.+.+.-+.+.. |-.....++..++
T Consensus 255 ~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii 334 (491)
T PF03219_consen 255 PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTII 334 (491)
T ss_pred hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1122233344555668889999999988888777666555444444444444545443332222 2334455666666
Q ss_pred hhhhhhHhhhhccCC
Q 037413 331 ARPLGGLMSDMAARP 345 (530)
Q Consensus 331 ~~~~~g~l~dr~~~r 345 (530)
..++++.+.+|+|-+
T Consensus 335 ~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 335 MMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHHHHhhHH
Confidence 667777787777754
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-08 Score=88.32 Aligned_cols=127 Identities=17% Similarity=0.294 Sum_probs=93.9
Q ss_pred HHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh-hhhhHHHHHhhhccCCcchh
Q 037413 108 VSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLA-TFVSCQYWMSTMFNGKIIGL 186 (530)
Q Consensus 108 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~r~~ 186 (530)
.+.-.-|.++.+.+.||+|||+.+....+++++..++...+.+-..+.+.-+..-++.. ++.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34555688999999999999999999999999999987766433222222222223333 46677889999999999999
Q ss_pred hHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 187 VNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 187 ~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
..|...++..+|+++.|+++ ...+. .-..+..+.+.+.++.++...++
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~----------s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAEL----------STSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhcc----------ceeehHHHHHHHHHHHHHHheee
Confidence 99999999999998888776 22221 34456667777777777777666
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.4e-07 Score=89.28 Aligned_cols=174 Identities=12% Similarity=0.099 Sum_probs=115.2
Q ss_pred hhchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcch
Q 037413 276 ITNYRTWIFVLLYGMSLGI----ELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGR 351 (530)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~ 351 (530)
+++++++..+...++.... .......++ +.....|-+ ....++.....+...++.++.|.++|.+|||
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~-~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr------ 108 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILP-YINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRR------ 108 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcch------
Confidence 4556666554444333222 222223344 444556665 3455666777888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 352 LWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
+..+.+.++..++.++....++....+....+.|++.+..........+.+|.+.|+.+.++.....-+...++|.+..
T Consensus 109 -~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 109 -YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred -HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 5888888888889999888899988999999999987665543333345778888887776665444344445666654
Q ss_pred h-ccCCCcchhHHHHHHHHHHHHHHHHH
Q 037413 432 T-SSRHSTATGISLMGIMIVCCTFPVAL 458 (530)
Q Consensus 432 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (530)
. ....++++.+++..+...++.+...+
T Consensus 188 ~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 188 LFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4 23456777777666655555444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=92.17 Aligned_cols=118 Identities=13% Similarity=0.045 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhh-hhhHHH
Q 037413 97 KTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF--VSSARGYIAARFMIGFSLAT-FVSCQY 173 (530)
Q Consensus 97 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (530)
++..+.+.....+...++.+++++++||+|+|+.+.++.++.+++.+...+ .++.+.+++..++.|++.+. .+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888889999999999999999999888766654443222 35777788888999999996 677778
Q ss_pred HHhhhcc-------CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 174 WMSTMFN-------GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 174 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
+++|..+ +++.|..++.......+|..+|+.+++.+.+...
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888775 2234667888888889999999998888877664
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-06 Score=78.79 Aligned_cols=158 Identities=17% Similarity=0.226 Sum_probs=130.8
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhh-hhCCchhhHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHH
Q 037413 87 PIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCD-LLGPRYGCAFLIMLSAPTVFSMVF---VSSARGYIAARFMIG 162 (530)
Q Consensus 87 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G 162 (530)
|+=.+-||+|..|...++.....|..++-...|++.. |.+++++..+++.+.+++..+..+ ..+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4445779999999999999999999999999999888 678888888888888887776544 467889999999999
Q ss_pred hhhhhh-hhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCC-CCCCchhHHHHHHHHHHHHHHH
Q 037413 163 FSLATF-VSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGA-TPFTAWRIAFFAPGCLHVIMGI 240 (530)
Q Consensus 163 ~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~-~~~~~wr~~f~~~~~~~~~~~~ 240 (530)
++.|.+ ....+...+...+++.|..+|.+.....+...++.++++.+.+....... ....+|-.+|.+.++..++...
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999974 56668889999988999999999999999999999999999888765443 3455889999999877666555
Q ss_pred HHHH
Q 037413 241 LVLT 244 (530)
Q Consensus 241 ~~~~ 244 (530)
+...
T Consensus 393 ll~~ 396 (403)
T PF03209_consen 393 LLGR 396 (403)
T ss_pred HHHH
Confidence 4433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=84.59 Aligned_cols=178 Identities=11% Similarity=0.065 Sum_probs=137.8
Q ss_pred hhch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhc-cCCCCCc
Q 037413 276 ITNY-RTWIFVLLYGMSLGIELTIDNVIAEYFFDRFN----LKLHTAGVIAATFGMANIFARPLGGLMSDMA-ARPFGMR 349 (530)
Q Consensus 276 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~r~~~~ 349 (530)
+++| .++.+...-+.--+.+|+....+..|+....+ ++.+++.-+++.+....-+..+++||++||+ |+|
T Consensus 17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~---- 92 (498)
T COG3104 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR---- 92 (498)
T ss_pred CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh----
Confidence 3444 45666666677778888888889889888777 9999988888888777777889999999996 666
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHhhhhhcccccccc-ccccc--cccchhhhhhhhhhHHHH
Q 037413 350 GRLWNLYIVQTLGGIFCICLGRAS--TLPLSILSMILFSITTQAACGATFGIIP-FISRR--SLGVISGLTGAGGNFGSG 424 (530)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~--~~g~~~g~~~~~~~~g~~ 424 (530)
..++.+.++..++.+++...+ +...+++.+.++++|.|..=+...+++. ..+++ +|-.++++..+..++|++
T Consensus 93 ---~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl 169 (498)
T COG3104 93 ---RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL 169 (498)
T ss_pred ---HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence 377777888888877777663 5667888888888999888888877765 44432 477788999999999999
Q ss_pred hhhhhhhh-ccCCCcchhHHHHHHHHHHHHHHHHHhh
Q 037413 425 LTQLLFFT-SSRHSTATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 425 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
++|.+.+. .+.+++..+|...++-+..+.+...+..
T Consensus 170 ~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999887 5677888888777777776666554444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=87.01 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=93.5
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhh-hh
Q 037413 96 IKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF-----VSSARGYIAARFMIGFSLAT-FV 169 (530)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~-~~ 169 (530)
+....+++.+...++..++.++++++.||+|+|+.+.++.++..++.+...+ .++.+.+++.-++.|++.+. ..
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888999999999999999999999888877766655432 35677777788889999886 66
Q ss_pred hHHHHHhhhcc-------CCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 170 SCQYWMSTMFN-------GKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 170 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
...++++|..+ +++.|..++.......+|..+++.+.+.+.+...
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77788888855 3334668899988889999999988888877653
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=87.09 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=116.4
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHH
Q 037413 309 RFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAS--TLPLSILSMILFS 386 (530)
Q Consensus 309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 386 (530)
.+.++..+-+++.+....+.+++.+.+|++.||+|.|+ ++..+.++.++..++.+... +.+.+++.=++.|
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~-------v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARR-------VFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG 139 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchH-------HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence 57889999999999999999999999999999999984 66666666666655554332 3446677788899
Q ss_pred HHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhh-ccC-CCcchhHHHHHHHHHHHHHHHHHhh
Q 037413 387 ITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSR-HSTATGISLMGIMIVCCTFPVALVH 460 (530)
Q Consensus 387 ~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (530)
++.+..+|....+. .-.|+++|++..++.....++|.+++-++.|. .+. .++...+++.+.+.++..++...++
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998885 47788999999999999999999888877776 444 7888889888888777666544444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-09 Score=108.52 Aligned_cols=160 Identities=17% Similarity=0.083 Sum_probs=105.2
Q ss_pred cccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH--h---hhh----
Q 037413 80 FAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV--F---VSS---- 150 (530)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~~---- 150 (530)
.......+.+.+..+.+.. -.......+...++.++...+.||+|||+.++.+.++.+++.+..+ . .++
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344445667777777666 2222333344556777777999999999999999999888877764 1 121
Q ss_pred -HHHHHHHHHHHHhhhh--hhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHH
Q 037413 151 -ARGYIAARFMIGFSLA--TFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIA 227 (530)
Q Consensus 151 -~~~l~~~r~l~G~~~~--~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (530)
+..+ +.-.+...+.+ ..+....+..|.+|.+.|++..++......++..+++.+.+.+.+.. +-...
T Consensus 348 ~~~~i-~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~---------~~~~~ 417 (451)
T PF00083_consen 348 SILSI-VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL---------GGWGV 417 (451)
T ss_pred ccccc-eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------ccccc
Confidence 2222 22222222222 24555688899999999999999999988888888877766665543 32455
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 037413 228 FFAPGCLHVIMGILVLTLGQDLPD 251 (530)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~ 251 (530)
+++.+.++++..+..++++||+..
T Consensus 418 ~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 418 FLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred chhhHHHHHHHHhheeEEEeeCCC
Confidence 666666667777777777666543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-07 Score=89.62 Aligned_cols=179 Identities=11% Similarity=0.111 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHH--------HH-HHHHHHHHHhhhhhHHHhhhhCCchhhHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGN--------AG-IASVSGSIFSRLVMGAVCDLLGPRYGCAF 133 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~-s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 133 (530)
+.+...+..+++.-...+..+.....+-+.+++.+.+... .. -+...+++.+..+...+.|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5555666666666666667777777788877775544333 11 22233444577888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhh----HHHHHHHHHHHHhhhhh--hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHH
Q 037413 134 LIMLSAPTVFSMVFVSS----ARGYIAARFMIGFSLAT--FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTP 207 (530)
Q Consensus 134 ~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~--~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 207 (530)
|.+++++..+..+...| -..+++...+..+.... ......+-+|.||.+-|+...|+..+.+-+|.++|.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999998888755 22334444444444332 2334467799999999999999999999899877775443
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 208 FIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 208 ~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
.+.. .......+.|++|++.+.++++..+..+++
T Consensus 464 ~~t~----~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 464 YLTD----HNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred Hhhh----ccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 3333 112223388999999999888776666555
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=72.48 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHh
Q 037413 290 MSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICL 369 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 369 (530)
...+..+.+..|.|. +++.+|++.++...+.....++..+| ++.|.+.|+++.+ ..+.++.....+++.++
T Consensus 13 ~~~Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-------~~l~iG~~~~~~GY~~~ 83 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-------VVLLIGAVLGFVGYGLL 83 (250)
T ss_pred HhcCcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-------HHHHHHHHHHHHHHHHH
Confidence 344455666665554 56779999999999988888888775 8889999999987 35566666666655544
Q ss_pred hc--C-----CcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 370 GR--A-----STLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 370 ~~--~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.. . .+.|...+..++.+.+........... +.++ |++||++.|+.-....+++.+-..++..
T Consensus 84 ~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 84 WLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred HHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHHHH
Confidence 32 1 234444444444444433332332222 3455 5789999999999999998887777544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.6e-06 Score=67.52 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccC
Q 037413 103 AGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNG 181 (530)
Q Consensus 103 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~ 181 (530)
-.++......+.+++.+.+.+++|.|+.+++|.+...+-.+.. +-++.+.++.+-++.|++.+. +.+.-.++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3566667778888899999999999999999999998655544 457788999999999999996 77777999999999
Q ss_pred CcchhhHhHhhhhhhhhhhhHHhH
Q 037413 182 KIIGLVNGTAAGWGNMGGGITQLL 205 (530)
Q Consensus 182 ~~r~~~~~~~~~~~~~G~~~~~~~ 205 (530)
++|++-.+++......+.++|.++
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777777666654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=81.93 Aligned_cols=176 Identities=15% Similarity=0.036 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS 144 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 144 (530)
+..+.+..+..+..........+.+-+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++
T Consensus 297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~ 375 (513)
T KOG0254|consen 297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI 375 (513)
T ss_pred HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence 33444444444444555556677777777776543 45555566666777777899999999999999999999999998
Q ss_pred HHhhhhH-------------HH-HHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 145 MVFVSSA-------------RG-YIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 145 ~~~~~~~-------------~~-l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
.+..... .. ...+-++..+..+..+....+.+|.+|.+-|+++.++......+...+-....+.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~ 455 (513)
T KOG0254|consen 376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT 455 (513)
T ss_pred HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8754221 11 111222333333334455578899999999999988876655444432222222222
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHH-HHHHhccCCC
Q 037413 211 ELIRRAGATPFTAWRIAFFAPGCLHVIMGI-LVLTLGQDLP 250 (530)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~~~~p 250 (530)
... ++...|...+..+.+..+ ..+++.||+.
T Consensus 456 ~~~---------~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 456 EAL---------GIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred Hhc---------cccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 111 246677777777766666 5666655543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-06 Score=81.98 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=106.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 037413 308 DRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSI 387 (530)
Q Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (530)
+..++...+.+.+.+++.++.+++.+.++.+.||++-. ..+....++.++..++.....+.+.+++.-++.|+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls-------~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl 146 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLS-------KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGL 146 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45567778889999999999999999999999999944 24444444444433333346788888889999999
Q ss_pred Hhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh-------ccCCCcchhHHHHHHHHHHHHH
Q 037413 388 TTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT-------SSRHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 388 ~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 454 (530)
..+..+|....+.. -+.++++|..+|+..+...+|+++|+.+... ....++++.|.+-+++.+...+
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 99999999988866 5667799999999999999999999998443 2345667777766665555544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=86.51 Aligned_cols=117 Identities=16% Similarity=0.043 Sum_probs=99.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 037413 308 DRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSI 387 (530)
Q Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (530)
+....+.....+..+++.++..+|.++.|.++||+||| .++..+.++..++-+...+.++.+...+.-++.|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH-------HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 34556777788888899999999999999999999999 47778888888877888888999999999999999
Q ss_pred Hhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 388 TTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 388 ~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+.+......+.+ .+.+++++|+.+..+ ......++.+++.+.+.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~ 228 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAY 228 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999888888888 568899999999999 77777788777777655
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-05 Score=77.69 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHH
Q 037413 286 LLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIF 365 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~ 365 (530)
+.-+.....+.....++..|+.+..|+++..+|.+..+.-+...+.-++.|.++||...|.+.++ .++.++.+..++.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~r--p~il~g~i~~~i~ 93 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFR--PWVLFGALPFGIV 93 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcc--hhHhHHHHHHHHH
Confidence 33333444555566788999999999999999999999999999999999999998765543222 3333444444444
Q ss_pred HHHhhcCC--c----HHHHHHHHHHHHHHhhhhhccccccccccc--cccccchhhhhhhhhhHHHHhhhhh
Q 037413 366 CICLGRAS--T----LPLSILSMILFSITTQAACGATFGIIPFIS--RRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 366 ~~~~~~~~--~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
+.++...+ + .....+..+++.+++.....+..++..+.. +++|++..+.......+|+.+++.+
T Consensus 94 ~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 94 CVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333222 1 223444445566677777777777755443 5689999999998888887776655
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-05 Score=70.93 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=113.9
Q ss_pred hccccccchHHHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 037413 78 STFAAAPLVPIIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIA 156 (530)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (530)
........++.+.++ .|.++.+.+...+.+..+..+|.++...+..|+...+.+.+..++..+-++..++++++..++
T Consensus 251 ~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~- 329 (422)
T COG0738 251 AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY- 329 (422)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-
Confidence 344444455665555 889999999999999999999999999999999999999999988888888889999966554
Q ss_pred HHHHHHhhhh-hhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 037413 157 ARFMIGFSLA-TFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLH 235 (530)
Q Consensus 157 ~r~l~G~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (530)
+-++.|+..+ ++|...+...+..+ +.....|..-.+..+|+++-|.+.+.+.+.. |-...+.+...+|
T Consensus 330 ~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~---------g~~~~~~~~pllc 398 (422)
T COG0738 330 ALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMF---------GIQLTFLIVPLLC 398 (422)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Confidence 4567788888 58988888888887 2333344444556788888887777777766 6676666555555
Q ss_pred HHHH
Q 037413 236 VIMG 239 (530)
Q Consensus 236 ~~~~ 239 (530)
.+..
T Consensus 399 ~lyV 402 (422)
T COG0738 399 YLYV 402 (422)
T ss_pred HHHH
Confidence 4443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.4e-06 Score=59.35 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=59.0
Q ss_pred HHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 69 WLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
-..+++.+.......|.+|...++.|++..|+|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3445555556666778888888899999999999999999999999999999999999988887766554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.8e-05 Score=73.50 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 283 IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
.....-+.....+.....|+..|+.+..|+++..+|.++.+.=+..++.-++.|.++||..+|.+.++ .+++.+.+..
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfR--P~lL~g~ip~ 93 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFR--PWLLWGAIPF 93 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccccc--HHHHHHhHHH
Confidence 34444444555566667789999999999999999999999999999999999999999877654432 3333443334
Q ss_pred HHHHHHhhcCC------cHHHHHHHHHHHHHHhhhhhcccccccccc--ccccccchhhhhhhhhhHHHHhhhhhh
Q 037413 363 GIFCICLGRAS------TLPLSILSMILFSITTQAACGATFGIIPFI--SRRSLGVISGLTGAGGNFGSGLTQLLF 430 (530)
Q Consensus 363 ~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~ 430 (530)
++...+....+ +....++...++++++.....+..++.++. .+++|.+..+.-..+..+|+.+...+.
T Consensus 94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333222 345566677788888888888888886644 456899999998888888866554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.3e-05 Score=73.85 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhhhhccccc-cchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhH-HHhhhhCCchhhHHHHHHHHH
Q 037413 63 TTFHLSWLSFFTCFVSTFAAA-PLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMG-AVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~ 140 (530)
..+.++....+....+..... ...-.+...+++++.+.+...+.......+++++.. .+...+|-|+++..|++.-.+
T Consensus 241 ~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~ 320 (463)
T KOG2816|consen 241 LLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFL 320 (463)
T ss_pred cchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHH
Confidence 334444445554444433222 223346678999999999888888888888888777 777788999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 141 TVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
..+..+++++.|+++...++.++.....+...+.++.+..++++|+++++....-.+...+++.+-..+....
T Consensus 321 ~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 321 QLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999888889999999999999999999999999988888888887666665554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00032 Score=66.63 Aligned_cols=344 Identities=11% Similarity=0.051 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHH---HHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIML---SAP 140 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~---~~~ 140 (530)
...+.++..+-....+..+-...+...+++-.+.. .......+.+...+..++...+--+..-|.-..++..+ ..+
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il 97 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL 97 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666677777777654433 22333334443333444444433333322211111111 111
Q ss_pred HHHHHHhh---------hhHHHHHHHHHHHHhhhhhhh-hHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 141 TVFSMVFV---------SSARGYIAARFMIGFSLATFV-SCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 141 ~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
..+.+.++ ..|+..++.-.+.+++.|.+. ......+ .+|++.-+-.+ ++.++++.+..+.. ++.
T Consensus 98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~ytqavm----~G~a~aG~l~Sl~~-i~t 171 (406)
T KOG1479|consen 98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYTQAVM----SGQALAGTLTSLLR-ILT 171 (406)
T ss_pred HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHHHHHH----hcchhHhHHHHHHH-HHH
Confidence 11122221 345666677777788877644 3334444 45554332222 23334343333221 222
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc-----cc----cccCCCCCCCCh---hHHHHHhhhc
Q 037413 211 ELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNL-----NT----LQKKGDVPTDKF---PKVLWYAITN 278 (530)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~----~~~~~~~~~~~~---~~~~~~~~~~ 278 (530)
..... +...+ -..|.+.+.+.++++++.+...++.|--+. .+ .++++.+++.+. ....+.++++
T Consensus 172 ka~~~---~~~~s-A~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~k 247 (406)
T KOG1479|consen 172 KAAFS---DSRTS-ALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLSNEDDSLWDIFKK 247 (406)
T ss_pred HHhcC---CCCce-eehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccccccchHHHHHHH
Confidence 22111 11112 234555555555555656656565542110 00 011111111111 1123344432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHH-HHHHHHhhhhhhhHhhhhccCCCCCcchhHH
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLK---LHTAGVIAAT-FGMANIFARPLGGLMSDMAARPFGMRGRLWN 354 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~ 354 (530)
.+...+.. +..+......+|.+..+..+-. ....-++... +++...+|.+...++-++-.|.. ++
T Consensus 248 --~~~~~~~i---~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l------~i 316 (406)
T KOG1479|consen 248 --IKDLAFNI---FLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKL------TI 316 (406)
T ss_pred --HHHHhhch---heeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCcee------hH
Confidence 12222211 2223333335666666544222 2233344445 77888888777766655443321 11
Q ss_pred HHHHHHHHHHHHH-Hh-----hcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhh
Q 037413 355 LYIVQTLGGIFCI-CL-----GRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQ 427 (530)
Q Consensus 355 ~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~ 427 (530)
....=.+..-.+. .- ....+.+..++...++|+..|-.....+.+.+ .++++++-.+-.+...+-..|-+.|.
T Consensus 317 ~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 317 PVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred HHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111111111 11 12335566777778888888777777777765 55555554444444444444444444
Q ss_pred hh
Q 037413 428 LL 429 (530)
Q Consensus 428 ~~ 429 (530)
.+
T Consensus 397 ~~ 398 (406)
T KOG1479|consen 397 LL 398 (406)
T ss_pred HH
Confidence 44
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=64.79 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=61.9
Q ss_pred CcchhhHhHhhhhhhhhhhhHHhHHHHHHH-HHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccC
Q 037413 182 KIIGLVNGTAAGWGNMGGGITQLLTPFIYE-LIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKK 260 (530)
Q Consensus 182 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 260 (530)
|+|+....+...+.++|.++..+ |++.. .... ....+|++++.+.+++.++.+++..++-++....... .+++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i--pF~~~~~~~~---~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~ 75 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI--PFLISSSVVI---ALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQE 75 (267)
T ss_pred CccceeeeeccccchhhHHHHHh--hHHhcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccc
Confidence 56777777777788888877653 33333 1110 0112799999999998888777777664442211111 0111
Q ss_pred CCCCCCChhHHHHHhhhchhHHHHHHHHHHH
Q 037413 261 GDVPTDKFPKVLWYAITNYRTWIFVLLYGMS 291 (530)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (530)
+.+...+......+.+|++..|...+.+...
T Consensus 76 k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 76 KENSTLSKKPSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred cccccccccchHHHHHccchHHHHHHHHHHH
Confidence 1111222236778899999999888776543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00083 Score=66.31 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=79.1
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCH-HHHHHHHHHHHHHHHhhhhhhhHhhhhccCCC
Q 037413 272 LWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRF----NLKL-HTAGVIAATFGMANIFARPLGGLMSDMAARPF 346 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~ 346 (530)
++.++| +.|...+..++.+.. ....+|.+..+.. +.+. ...-.+...++++-.+|+.+..+.. .-.+|.
T Consensus 264 ~~~v~k--ki~~~~~~vf~~F~v---TL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~ 337 (437)
T TIGR00939 264 VWVVFT--KVWLLAFSVVFVFTV---TLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDS 337 (437)
T ss_pred HHHHHH--HHHHHHHHHHHHHHH---HHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCc
Confidence 344443 445555544443332 2334555533211 2222 2344566788999999998665431 111111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhh---------cCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhh
Q 037413 347 GMRGRLWNLYIVQTLGGIFCICLG---------RASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTG 416 (530)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~ 416 (530)
+.+....+.=++....+++.. ..++.+..++.++++|+..|-..+..+.+.+ .+++++|..+..+..
T Consensus 338 ---~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~ 414 (437)
T TIGR00939 338 ---RWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMV 414 (437)
T ss_pred ---cchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 011111111111111212211 1235566777788889888877777777644 667777877777777
Q ss_pred hhhhHHHHhhhhh
Q 037413 417 AGGNFGSGLTQLL 429 (530)
Q Consensus 417 ~~~~~g~~~~~~~ 429 (530)
.+..+|-.+|..+
T Consensus 415 ~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 415 IFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777766
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0016 Score=63.27 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=126.2
Q ss_pred HHHHHHHHhhhhccccccchHHHHHh--cCCChhhHHHHHHHHHHHHHHhhhhhHHHhh-----hhCCchhhHH-HHHHH
Q 037413 67 LSWLSFFTCFVSTFAAAPLVPIIRDN--LNLIKTDIGNAGIASVSGSIFSRLVMGAVCD-----LLGPRYGCAF-LIMLS 138 (530)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~-~~~~~ 138 (530)
++.+.+++...-.......+|.+.++ -++|.+|.+... +....+. .-++|.++.| |+||||.-++ .-.+.
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 45556666665544443567887777 678888877642 2222222 3445555555 6898876332 22222
Q ss_pred HHHHHHHHhhh----------------------hH--HHHHHHHHHHHhhhhhh-hhHHHHHhhhccCCcchhhHhHhhh
Q 037413 139 APTVFSMVFVS----------------------SA--RGYIAARFMIGFSLATF-VSCQYWMSTMFNGKIIGLVNGTAAG 193 (530)
Q Consensus 139 ~~~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~ 193 (530)
++..+..+... +. ..+...-++.=+-.+.. .+.-.+.-.+..+++++.+..-...
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 22222222111 11 11122222222222322 2222444445566777777665544
Q ss_pred hhhhhhhhHHhHHHHHHHHHHhc--------CCCCCCch---hHHHHHHHHHHHHHHHHHHHhccCCCCCCccc-c----
Q 037413 194 WGNMGGGITQLLTPFIYELIRRA--------GATPFTAW---RIAFFAPGCLHVIMGILVLTLGQDLPDGNLNT-L---- 257 (530)
Q Consensus 194 ~~~~G~~~~~~~~~~l~~~~~~~--------~~~~~~~w---r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~---- 257 (530)
+.++|..++. .+.-.+.+. ......|. ..-..+.|.+.+++.+...++.+|.|+.+... .
T Consensus 162 G~~~Gyfls~----tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~ 237 (544)
T PF13000_consen 162 GQTAGYFLSF----TVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPIN 237 (544)
T ss_pred HhhhhHHHHH----HHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccc
Confidence 4444444433 333222210 11111121 12234455555666667777767765322100 0
Q ss_pred --c---c----CCCCCC-------CCh---hHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 037413 258 --Q---K----KGDVPT-------DKF---PKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAG 318 (530)
Q Consensus 258 --~---~----~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 318 (530)
+ + +..+.+ .+. .+.+++++|.|.+..+.+.....-..+.........=+.+ .|++.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LA 316 (544)
T PF13000_consen 238 KSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLA 316 (544)
T ss_pred cccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhH
Confidence 0 0 000000 111 2234566777887777776666555554444434434445 799998887
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhccC
Q 037413 319 VIAATFGMANIFARPLGGLMSDMAAR 344 (530)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~l~dr~~~ 344 (530)
++.. ..+...++.|+++.|+.+
T Consensus 317 l~~l----i~~P~qii~~~~~~Kws~ 338 (544)
T PF13000_consen 317 LLVL----IDFPFQIILPYYIGKWSA 338 (544)
T ss_pred HHHH----HhhhHHHHHHHHhhhhhc
Confidence 7543 344445566666666543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00064 Score=69.14 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHHHhhhhccc-cccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFA-AAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLS 138 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~ 138 (530)
.|+.............+.... ...++..+.++++.+...+.-..+.+.-...+..+.++.++|-| ||-+++.++.++.
T Consensus 35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~ 114 (571)
T KOG1237|consen 35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLIS 114 (571)
T ss_pred hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555444444444444333 35677888999999888888888888888888999999999997 8999999999998
Q ss_pred HHHHHHHHhhhhH-------------------------HHHHHHHHHHHhhhhh-hhhHHHHHhhhcc---CCcc---hh
Q 037413 139 APTVFSMVFVSSA-------------------------RGYIAARFMIGFSLAT-FVSCQYWMSTMFN---GKII---GL 186 (530)
Q Consensus 139 ~~~~~~~~~~~~~-------------------------~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~---~~~r---~~ 186 (530)
.+|.++..++... ..++.+.-+..+|.|+ -+.....-+|-++ ++++ ..
T Consensus 115 ~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~ 194 (571)
T KOG1237|consen 115 LLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPS 194 (571)
T ss_pred HHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCccc
Confidence 8887665543211 2456666777778887 5777788889888 3222 25
Q ss_pred hHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 037413 187 VNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVL 243 (530)
Q Consensus 187 ~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (530)
.+.++....++|..++..+.. +.+. ..+|.+.|.+..+..++..++.+
T Consensus 195 fFnW~yf~~~~g~l~a~t~~v----yiq~-----~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 195 FFNWFYFSQNGGALLAQTVLV----YIQD-----NVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred chhHHHHHHHHHHHHHHHHHH----hhhh-----cccceeeccHHHHHHHHHHHHHH
Confidence 566666666666655544333 3322 22999999998877766555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.9e-05 Score=53.68 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCC
Q 037413 283 IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPF 346 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~ 346 (530)
.+-..+++.++....+..++|.|+.+ .|+++.+.|.+.++..+..+++.++.|.++||.++++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 34455666777777888899999987 7999999999999999999999999999999999985
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=59.15 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=73.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 037413 308 DRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSI 387 (530)
Q Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (530)
+.+|++..+++.++....+.+.+...+.|.++||+|||+ ..++..++..+.++ .-..++.+.+++.=++.|+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-------~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGi 133 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK-------ACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGI 133 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHH
Confidence 468999999999999988999999999999999999984 44444444444444 3344678888888888898
Q ss_pred Hhhhhhcccccc-cc-----ccccccccchhhhhh
Q 037413 388 TTQAACGATFGI-IP-----FISRRSLGVISGLTG 416 (530)
Q Consensus 388 ~~~~~~~~~~~~-~~-----~~~~~~~g~~~g~~~ 416 (530)
+....+...-+. +. .+|++..+..++...
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 888887776554 32 234444555555444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0031 Score=57.01 Aligned_cols=309 Identities=13% Similarity=0.076 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhh
Q 037413 100 IGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTM 178 (530)
Q Consensus 100 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~ 178 (530)
.|.+.-+-.+...+..+.+..+.||+---.=+.+..++.+.+.++.+++++.++-+++-.+..++.|. -..-..+ +..
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSR 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hcc
Confidence 45566666777788888888899997655555666777888889999999999999999988888884 3333333 333
Q ss_pred ccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc-c
Q 037413 179 FNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNT-L 257 (530)
Q Consensus 179 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~ 257 (530)
+++ ...+-++++.+..+++|. .-+..+... -...-|...++...+.++.+...++.+++ ||+.... .
T Consensus 143 Y~~----~~i~~WSSGTGgAGliGa----~SYa~lT~~---~~~spk~Tlli~l~lP~lfa~~yf~lL~~-pes~~~ptl 210 (409)
T KOG3880|consen 143 YPS----IVIAGWSSGTGGAGLIGA----SSYAFLTSW---ANLSPKSTLLIMLFLPALFAFAYFFLLKS-PESVYSPTL 210 (409)
T ss_pred CCC----ceeccccCCCCcchhhhh----hHHHHHhhh---cCCChhhHHHHHHHHHHHHHHHHHheeCC-CccccCCCc
Confidence 333 223334444444444443 333333211 01156788888888877777777777665 5443210 0
Q ss_pred cc------C------CCCCC--CChhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-hcCCCHHH---H
Q 037413 258 QK------K------GDVPT--DKFPKVLWYAIT-NYRTWIFVLLYGMSLGIELTIDNVI-AEYFFD-RFNLKLHT---A 317 (530)
Q Consensus 258 ~~------~------~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~~~~---~ 317 (530)
++ + ..+++ .+.....++-++ -+..+..++-.+..+...+.++.-+ +..+.+ ..|++... .
T Consensus 211 ~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqY 290 (409)
T KOG3880|consen 211 QPSTEIIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQY 290 (409)
T ss_pred CccceeccCCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcc
Confidence 00 0 00111 001111121111 1122223333334444444443322 222211 12433322 2
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHH---HHhhcCCcHHHHHHHHHHHHHHhhhhhc
Q 037413 318 GVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFC---ICLGRASTLPLSILSMILFSITTQAACG 394 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (530)
-++...+.++ ....|-.-+.-....++.+.+...+-.+.. ..+.+.++.+...+..+.-|+..|..+.
T Consensus 291 RwyqvlYQlG---------VFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV 361 (409)
T KOG3880|consen 291 RWYQVLYQLG---------VFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV 361 (409)
T ss_pred hhhheeeeee---------EEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence 3433344433 222222211111123344444444433333 2345667777666666666766666655
Q ss_pred ccccc-ccccccccccchhhhhhhhhhHHHHhhhhhh
Q 037413 395 ATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLF 430 (530)
Q Consensus 395 ~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 430 (530)
..+-- ..+.+|+.|--+++.....-.+|..++..+.
T Consensus 362 NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 362 NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 55443 4578999999999998888888877776663
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=69.41 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCC---cchhhHhHhhhhh
Q 037413 129 YGCAFLIMLSAPTVFSMVFVS---------SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGK---IIGLVNGTAAGWG 195 (530)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 195 (530)
|+++++.++..+|.++..++. +.+.++++-++.++|.|+ =+....+++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 578889999999998855442 236789999999999997 577889999999865 3567788888999
Q ss_pred hhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 037413 196 NMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTL 245 (530)
Q Consensus 196 ~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (530)
++|..++..+.+++.+.. +|.+.|.+.++..++..+..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~~---------~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY---------GWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS----------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhcccc---------chhhhhhHHHHHHHHHHHHHHhC
Confidence 999988887777766433 99999999988877665554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00095 Score=64.07 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=88.6
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHH---
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFS--- 144 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--- 144 (530)
+.+.++..+.....+.+.+. ...++.-..++..+...+|.+|-.++.--...+ |+-+-+.+.+-..+..+..++
T Consensus 252 L~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~ 328 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSW 328 (402)
T ss_pred HHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655554433221 112333445677888888888776654332221 332222222222222222222
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH
Q 037413 145 MVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY 210 (530)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 210 (530)
.-+.++.|.+++.-+..|+..|. +.-+...+.+..++++|..++|..+.+-++|..++.+++-.+-
T Consensus 329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23458899999999999999996 8888888888899999999999999999999877776654443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.031 Score=51.30 Aligned_cols=101 Identities=13% Similarity=0.191 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHH
Q 037413 62 MTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPT 141 (530)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 141 (530)
.+.+.++..++++.+........+...+..++|. .+ .+...+..+...++.+.+..++|.|+++.++.......
T Consensus 28 ~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~----~s--l~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly 101 (390)
T KOG3097|consen 28 LKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGT----VS--LGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY 101 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc----ch--hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445556666666555544444333334334431 11 12233444555666668999999999999988877654
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhh-hh
Q 037413 142 VFSMVFVSSARGYIAARFMIGFSLAT-FV 169 (530)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~ 169 (530)
.... +-+.|..++-.-.+.|++.+. +.
T Consensus 102 iA~N-l~pr~~tlVPa~~~~G~aa~p~W~ 129 (390)
T KOG3097|consen 102 IAAN-LEPRYETLVPAGLVLGMAAGPIWA 129 (390)
T ss_pred HHhh-cchhHHhhccHHHhhccccccccc
Confidence 3332 336788899999999999985 54
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=64.96 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC-C-cHHHHH
Q 037413 303 AEYFFD-RFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA-S-TLPLSI 379 (530)
Q Consensus 303 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 379 (530)
-.|+++ ..+-+....|+..+...++..++.++.|+...|.++-+ .++....+..++..+.++.+... + ..+++.
T Consensus 58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k---~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL 134 (488)
T KOG2325|consen 58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK---KPLIVSFLIAIIGNLLYLALAYVPNGVKYLML 134 (488)
T ss_pred chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc---cCHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 345544 24667788899999999999999999999999888521 23333334344444444233332 2 455666
Q ss_pred HHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 380 LSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
++-++.|+|.+. ....-.++. ...++.|.++.+..+...-+|.++||.+
T Consensus 135 ~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 135 VARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 666676766533 334455543 4445667777777776666666666666
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0029 Score=65.72 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCC-
Q 037413 295 ELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAS- 373 (530)
Q Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 373 (530)
++++...+..|+.+.+|++...+..++..+....-+..+++|+++|++-.|. +.+.++.++..++..++....
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~------~tIl~~~ii~~lG~~llai~a~ 76 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF------KTILYLSIVYVVGHALLSFGAI 76 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHhccC
Confidence 3455566777888889999998888888777777788899999999754332 355555555555554443321
Q ss_pred -------cHHHHHHHHHHHHHHhhhhhcccccccc-ccccc---cccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 374 -------TLPLSILSMILFSITTQAACGATFGIIP-FISRR---SLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 374 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.....++++.+..+|.+..-+...+... ...++ .+-..+.+.....++|+.+++.+.+.
T Consensus 77 ~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 77 PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223556677777788888777777743 44332 46677888888888999998888766
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0027 Score=63.12 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=109.1
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHh
Q 037413 94 NLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVF----------VSSARGYIAARFMIGF 163 (530)
Q Consensus 94 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 163 (530)
|.++...|.+..+..++..++..+..+..-++.-|+++..+.++.++..+.... .++.+-.+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 388999999998899999999999999888889889988888877766654221 1222333334466666
Q ss_pred hhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 037413 164 SLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILV 242 (530)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (530)
.... +.+...++++..|+...|...++..+..++|..++..++..+...+.... ++..+-.+..++..+..++...+.
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~-~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR-DDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccccchHHHHHHHHHHHHHHHHHH
Confidence 6664 77888999999999999999999999999999999999988888774211 123334455555555554444443
Q ss_pred HHh
Q 037413 243 LTL 245 (530)
Q Consensus 243 ~~~ 245 (530)
.++
T Consensus 410 ~lL 412 (433)
T PF03092_consen 410 FLL 412 (433)
T ss_pred HHc
Confidence 343
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=60.08 Aligned_cols=148 Identities=15% Similarity=0.090 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH-HHHHH----HH
Q 037413 294 IELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL-GGIFC----IC 368 (530)
Q Consensus 294 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~-~~~~~----~~ 368 (530)
+...+.......+...+|.+....+.+.+++.++..+|..+++++.++..++. ...-+...+ .++.. ..
T Consensus 29 ~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~~~e~~i~l~~~~~~~ll~~~ 102 (521)
T PRK03612 29 CGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------VAVELLLALLGGLSALILYAA 102 (521)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555667888888888888888888888887777653322221 111111111 11111 11
Q ss_pred hhcCCc-HHHHHHHHHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh--ccCCCcchhHHHH
Q 037413 369 LGRAST-LPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT--SSRHSTATGISLM 445 (530)
Q Consensus 369 ~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~ 445 (530)
..+... ....+...++.++..|+..|....+......++.|...|-......+|+++|+.+.+. ....+........
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~ 182 (521)
T PRK03612 103 FAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT 182 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 111111 1122333444556666666665554433333345666777788888888888888665 3345544444443
Q ss_pred HH
Q 037413 446 GI 447 (530)
Q Consensus 446 ~~ 447 (530)
+.
T Consensus 183 a~ 184 (521)
T PRK03612 183 GS 184 (521)
T ss_pred HH
Confidence 33
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=57.23 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=81.4
Q ss_pred HHHHHHHHHHh-cCCCHHHHHH-HHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 299 DNVIAEYFFDR-FNLKLHTAGV-IAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 299 ~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
..++..|+.+. .|++..+..- ++-...=..++..+....+.|.++.| .++++..+...+...++.+.++..
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-------pviil~~~~~i~t~~lll~~~sv~ 95 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-------PVIILQALSYIITWLLLLFGTSVL 95 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHCcHH
Confidence 34677788876 8898877653 22233334445556778899999988 366566655556666666778888
Q ss_pred HHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 377 LSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
.+-+.-+++|++.+. -...++++ ..+++++.-++.+...+..-+|.+++..++-
T Consensus 96 ~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 96 AMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877644 34445553 5667776666666666666655555555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.064 Score=54.48 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=81.2
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHH--HH-HHHHHHHhhhhH-----HHHHHHHHH
Q 037413 89 IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIML--SA-PTVFSMVFVSSA-----RGYIAARFM 160 (530)
Q Consensus 89 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~~-~~~~~~~~~~~~-----~~l~~~r~l 160 (530)
+.--+|-+..+.+.+.+++.+|.++|+.+++++.++--++.. .+-+.+ .+ ++..+......+ ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888899999999999999999999988643222221 111111 11 111111111111 122334456
Q ss_pred HHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHH-HHHhcCCCCCCchhHHHHHHHHHHHHH
Q 037413 161 IGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYE-LIRRAGATPFTAWRIAFFAPGCLHVIM 238 (530)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (530)
.|+..|+ +|....+..+.. .++-+...|-......+|.++|.++.+++.- .+ |-....++.+.+.+++
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l---------G~~~t~~~~a~l~~~~ 189 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL---------GLIRTAALTGSLNLLA 189 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHH
Confidence 6777775 565555554422 2234566777778888999888887776654 33 5444444555555544
Q ss_pred HHHH
Q 037413 239 GILV 242 (530)
Q Consensus 239 ~~~~ 242 (530)
+++.
T Consensus 190 a~~~ 193 (521)
T PRK03612 190 ALVF 193 (521)
T ss_pred HHHH
Confidence 4433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=56.82 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
..+...++..+.++....++.....+...-|+++..+|..-+...+....+.+...++.+|+|..+.-.+++..-.++..
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~ 338 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA 338 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 34555666666666655666666666666699999999999999999999999999999999988887777665554444
Q ss_pred HHHhh---hh--HHHHHHHHHHHHhhhh-----hh-hhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHH
Q 037413 144 SMVFV---SS--ARGYIAARFMIGFSLA-----TF-VSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQ 203 (530)
Q Consensus 144 ~~~~~---~~--~~~l~~~r~l~G~~~~-----~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 203 (530)
++..+ +. +...-+.-++.|+..+ ++ ....-++.|..|+++||...|.-.+..++-.++-.
T Consensus 339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 43321 11 0122233344444444 33 35568889999999999999998777766654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.039 Score=53.14 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC------CcH
Q 037413 302 IAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA------STL 375 (530)
Q Consensus 302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 375 (530)
...|..+.|| +...+-++..++.+..+...+.+.|+.||+|-| ....++..+.+++..+=... +.+
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR-------~a~llgt~ln~iGa~Ir~iss~p~v~~~f 138 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR-------TALLLGTVLNGIGAWIRLISSLPFVPPLF 138 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH-------HHHHHHHHHHHHHHHHhhhccCccccccc
Confidence 3345555667 666677778889999999999999999999988 35555666655555432211 122
Q ss_pred H--HHHHHHHHHHHHhhhhhcccccc----c-cccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 376 P--LSILSMILFSITTQAACGATFGI----I-PFISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 376 ~--~~~~~~~~~g~~~~~~~~~~~~~----~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
+ +...+-.+.+ ...+....+ . .-+++++|+++..+..+.+.+|.+++-.+
T Consensus 139 ~~~l~~~Gq~iaa----~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 139 RRPLTHTGQSIAA----AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred hhhhhHHhHHHHH----HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 2 2223333322 223333332 1 24688999999999888888887666555
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.036 Score=45.93 Aligned_cols=101 Identities=9% Similarity=0.005 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc
Q 037413 322 ATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP 401 (530)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (530)
++......+..++.+.+.+++|.| +.++++.+...+..... ..++.+.++....+.|++.+..+...-.++.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K-------~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPK-------WSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhH-------HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 344555666778888999999988 46666665555443333 3445677788888899998888877766644
Q ss_pred -ccccccccchhhhhhhhhhHHHHhhhhhh
Q 037413 402 -FISRRSLGVISGLTGAGGNFGSGLTQLLF 430 (530)
Q Consensus 402 -~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 430 (530)
...++.+++..|+...+.+.+.++|..+.
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888887777776663
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.18 Score=49.75 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhh---hCCchhhHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHH
Q 037413 101 GNAGIASVSGSIFSRLVMGAVCDL---LGPRYGCAFLIMLSAPTVFSMVFV------------------SSARGYIAARF 159 (530)
Q Consensus 101 ~~~~s~~~~~~~~~~~~~g~l~dr---~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~ 159 (530)
+...-...++..++..+.+.+.+| +||++.+.++..+..++.++.-.+ +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 333444455566666777777755 789999999999988888876543 25667788889
Q ss_pred HHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHH
Q 037413 160 MIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFI 209 (530)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 209 (530)
+.|++.+. ....+.++...+ +++|..+.++...-..++..++.+..+..
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999997 567778888888 56788888887777777776655544443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.00055 Score=69.52 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=1.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC
Q 037413 293 GIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA 372 (530)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (530)
+...++....-+-++.+++++..++|++.+.+-++.++..++..++.+|..|- .++..+.++.+++.+++...
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp-------rwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP-------RWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-------ceeeecHHHHHHHHHHHhcc
Confidence 33333333333456778999999999999999999999888888887775443 35556666666555443210
Q ss_pred C--------------------------------------------------cHHHHHHHHHHHHHHhhhhhcccccccc-
Q 037413 373 S--------------------------------------------------TLPLSILSMILFSITTQAACGATFGIIP- 401 (530)
Q Consensus 373 ~--------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 401 (530)
+ ....++++.++.|+|....++...++++
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 0 0113333444555555556666667766
Q ss_pred ccccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 402 FISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 402 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
.+++++.+...|+..+...+|-++|-.+++
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~ 198 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGS 198 (539)
T ss_dssp ------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHH
Confidence 566777888888888877777665555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.043 Score=39.78 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCc
Q 037413 295 ELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAST 374 (530)
Q Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
-+.+...+|... ++.++|..+.+++.+...++..+|.+...++.++..++ ..+..+.++..+..+.+...++
T Consensus 8 RFayTplLP~M~-~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 8 RFAYTPLLPLMQ-ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-------RLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHHhHhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344555677655 55799999999999999999999999999888875544 3556666666676666666665
Q ss_pred HH
Q 037413 375 LP 376 (530)
Q Consensus 375 ~~ 376 (530)
.+
T Consensus 80 ~~ 81 (85)
T PF06779_consen 80 FW 81 (85)
T ss_pred hH
Confidence 44
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.3 Score=48.52 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccccc
Q 037413 375 LPLSILSMILFSITTQAACGATFGIIPFISRRS 407 (530)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 407 (530)
.+..++..++.|++.+...+..+.+...+|++.
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~ 138 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAGVFPSTY 138 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcccCCHHH
Confidence 445556666777777788888888888888764
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.24 Score=46.32 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCC--cHH
Q 037413 301 VIAEYFFDRFNLKL--HTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRAS--TLP 376 (530)
Q Consensus 301 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 376 (530)
..+.+..+ .+.+. ...++..+...+...++.++.|.+.||.|||+ ....+........+...... ..+
T Consensus 24 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 24 ALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-------VLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-------HHHHHHHHHHHHHHHHHhCccchHH
Confidence 34444444 34444 46778888888888888899999999998872 33333222222222222222 355
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccc--ccccchhhhhhh-hhhHHHHhhhhhhhh
Q 037413 377 LSILSMILFSITTQAACGATFGIIPFISR--RSLGVISGLTGA-GGNFGSGLTQLLFFT 432 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~-~~~~g~~~~~~~~~~ 432 (530)
.........|++.+...+...++..+..+ +.++...+.... ...++..++|.+.+.
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGL 154 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555677777677777777554444 477888888777 466777777766544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.041 Score=53.09 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHH
Q 037413 284 FVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGG 363 (530)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 363 (530)
.....+...+++..-..+.++|+++ .|.+....+.+....-+.+.+.+++.|..+||...|...|+.... .+.....
T Consensus 37 v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~--~~s~~i~ 113 (498)
T KOG0637|consen 37 VASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFIL--AGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHH--HhhHHHH
Confidence 3333334444445556688888877 799998888888888888899999999999986555443333333 3333333
Q ss_pred HHHHHhhcCC--------c--H--HHHHHHHHHHH-----HHhhhhhccccccc-cccccccccc-hhhhhhhhhhHHHH
Q 037413 364 IFCICLGRAS--------T--L--PLSILSMILFS-----ITTQAACGATFGII-PFISRRSLGV-ISGLTGAGGNFGSG 424 (530)
Q Consensus 364 ~~~~~~~~~~--------~--~--~~~~~~~~~~g-----~~~~~~~~~~~~~~-~~~~~~~~g~-~~g~~~~~~~~g~~ 424 (530)
+.++++.+.. + . ....+..+++| +......++.-++. +...++++.+ +++....+..+|+.
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv 193 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV 193 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence 3333433221 1 1 11222233333 33445555666663 3333333333 77888888877877
Q ss_pred hhhhhhh
Q 037413 425 LTQLLFF 431 (530)
Q Consensus 425 ~~~~~~~ 431 (530)
+|-.+.+
T Consensus 194 LGY~~g~ 200 (498)
T KOG0637|consen 194 LGYALGS 200 (498)
T ss_pred eeeeccc
Confidence 7665543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.56 Score=46.84 Aligned_cols=145 Identities=7% Similarity=-0.081 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhh-hhhhhHhhhhccCCCCCcchh
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNL-----KLHTAGVIAATFGMANIFA-RPLGGLMSDMAARPFGMRGRL 352 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~~~r~~~~~~~ 352 (530)
|+++...+.+++..+.++. ---+.|..+. +.+...++.....+...+. .++.+++++|++|++. .
T Consensus 7 ~k~~~~~l~fF~il~~Y~i-----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l----f 77 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTI-----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL----F 77 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh----H
Confidence 4555555555554444332 1224455444 3356666666554544444 7888999999999842 1
Q ss_pred HHHHHHHHHHHHHH--HHhhcCC--------------------------cHHHHHHHHHHHHHHhhhhhc-ccccccc-c
Q 037413 353 WNLYIVQTLGGIFC--ICLGRAS--------------------------TLPLSILSMILFSITTQAACG-ATFGIIP-F 402 (530)
Q Consensus 353 ~~~~~~~~~~~~~~--~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~-~ 402 (530)
......+....+.+ ++....+ +.|...+..+...+......+ ..|++++ .
T Consensus 78 ~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi 157 (472)
T TIGR00769 78 YTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222222221111 1111111 122222222333333333444 5677765 4
Q ss_pred cccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 403 ISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 403 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
..+++..+-+++....+++|.++++.+...
T Consensus 158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 158 TTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788899999999999999999988544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.078 Score=54.89 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHH
Q 037413 281 TWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQT 360 (530)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~ 360 (530)
+..+.....+......++....-+-+.++++++..+.|++.+.+-++..+...+..+...|..|-+ ++.++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr-------~Ig~G~~ 170 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR-------WIGIGLV 170 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc-------eeeechh
Confidence 333333333333433344444444567789999999999988888888888888888877777653 3334444
Q ss_pred HHHHHHHHhhcC--------------------C-----------------------------c--HH-HHHHHHHHHHHH
Q 037413 361 LGGIFCICLGRA--------------------S-----------------------------T--LP-LSILSMILFSIT 388 (530)
Q Consensus 361 ~~~~~~~~~~~~--------------------~-----------------------------~--~~-~~~~~~~~~g~~ 388 (530)
+.+++.++.... + + ++ +++++.++.|+|
T Consensus 171 ~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG 250 (735)
T KOG3626|consen 171 LMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG 250 (735)
T ss_pred HHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence 444433332110 0 0 11 333444555556
Q ss_pred hhhhhccccccccc-cccccccchhhhhhhhhhHHHHhhhhhhh
Q 037413 389 TQAACGATFGIIPF-ISRRSLGVISGLTGAGGNFGSGLTQLLFF 431 (530)
Q Consensus 389 ~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~~ 431 (530)
....++...+++++ +.+++.....|+..++..+|-++|-.+++
T Consensus 251 ~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS 294 (735)
T KOG3626|consen 251 ATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGS 294 (735)
T ss_pred CCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHH
Confidence 55566666667764 44557777788887777766555555543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1 Score=43.44 Aligned_cols=36 Identities=8% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccc
Q 037413 375 LPLSILSMILFSITTQAACGATFGIIPFISRRSLGV 410 (530)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~ 410 (530)
++...+...+.+++.+...+..+.....+|++....
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqa 152 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQA 152 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHH
Confidence 445566666777777788888888888999886443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=2.6 Score=40.15 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhh-----hccCCCCCcchhHH
Q 037413 280 RTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSD-----MAARPFGMRGRLWN 354 (530)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~~~r~~~~~~~~~ 354 (530)
++..+.+.+. .++.-++....+|..++ ..|.|-++.+.......= .--.++...+.| |+|||+.+
T Consensus 32 ~illLl~LYl-lQGiP~GL~~~iP~lL~-ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksW------ 101 (510)
T KOG3574|consen 32 SILLLLFLYL-LQGIPLGLIGAIPLLLQ-AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSW------ 101 (510)
T ss_pred hHHHHHHHHH-HcCCchhHhhhhHHHhc-CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccce------
Confidence 4444444443 34444555556777665 357776665554332211 112356666777 99999744
Q ss_pred HHHHHHHHHHHHHHhhcCC-----------cHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHH
Q 037413 355 LYIVQTLGGIFCICLGRAS-----------TLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFG 422 (530)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g 422 (530)
+.-+..+.+..+.++.... +.......++++-+..+.---..... .....+++.|-++.......+.|
T Consensus 102 vvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G 181 (510)
T KOG3574|consen 102 VVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG 181 (510)
T ss_pred eeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence 2233333444343333211 12222223334444333332333333 34556677776666666666677
Q ss_pred HHhhhhhhhh
Q 037413 423 SGLTQLLFFT 432 (530)
Q Consensus 423 ~~~~~~~~~~ 432 (530)
.+++..++-.
T Consensus 182 yfL~~~ifLa 191 (510)
T KOG3574|consen 182 YFLGNVVFLA 191 (510)
T ss_pred HHhhcceeeE
Confidence 7776666433
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.037 Score=52.32 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=2.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhh
Q 037413 374 TLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
+.+..++.++++|+..|-..+..+.+. +.++++++..+..+...+-.+|-.+|..+
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --------------------HHHH---------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888777777776664 46667777777677776666676666655
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.65 E-value=5 Score=41.37 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHh
Q 037413 290 MSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICL 369 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 369 (530)
+-...++++...+-.|+...++.+...+.-....+........+++++++|-+--|. +.+.++.++..+++.++
T Consensus 48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry------~tI~~~s~i~~~G~~~l 121 (571)
T KOG1237|consen 48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY------FTINIGSLISLLGLFGL 121 (571)
T ss_pred HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHH
Confidence 344555555666778888888988877777777777777888899999999876543 34444443333332221
Q ss_pred h-------cC-------------Cc-----HHHHHHHHHHHHHHhhhhhcccccc-ccccc---cc---cccchhhhhhh
Q 037413 370 G-------RA-------------ST-----LPLSILSMILFSITTQAACGATFGI-IPFIS---RR---SLGVISGLTGA 417 (530)
Q Consensus 370 ~-------~~-------------~~-----~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~---~~---~~g~~~g~~~~ 417 (530)
. .. .. ...++..+.+..+|.++.-+...+. .+.++ ++ ....-+.....
T Consensus 122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf 201 (571)
T KOG1237|consen 122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYF 201 (571)
T ss_pred HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHH
Confidence 1 00 00 1244555556666777777777777 44454 22 22344555555
Q ss_pred hhhHHHHhhhhhhhhc-cCCCcchhHHHHHHHHHHHHHH
Q 037413 418 GGNFGSGLTQLLFFTS-SRHSTATGISLMGIMIVCCTFP 455 (530)
Q Consensus 418 ~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 455 (530)
..++|..++..+.... +..++..++.....+..++.++
T Consensus 202 ~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 202 SQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred HHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence 5667776666664443 4566666666655555554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.6 Score=43.17 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=24.9
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHH---HHHHHHHhhhhhhhHhhhhccCCCCC
Q 037413 301 VIAEYFFD-RFNLKLHTAGVIAA---TFGMANIFARPLGGLMSDMAARPFGM 348 (530)
Q Consensus 301 ~~~~~~~~-~~g~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~~~r~~~ 348 (530)
..|..+++ ..+.+-.+.+.+.. .+.+=-.-+.++=...+.|+|||+.+
T Consensus 22 siPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSW 73 (544)
T PF13000_consen 22 SIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSW 73 (544)
T ss_pred cchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchh
Confidence 46766655 23556555554322 22222222334445667789999743
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.30 E-value=7.2 Score=36.70 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=65.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhc-cCCCCCcchhHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHH
Q 037413 310 FNLKLHTAGVIAATFGMANIFARPLGGLMSDMA-ARPFGMRGRLWNLYIVQTLGGIFCICLGRA--STLPLSILSMILFS 386 (530)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 386 (530)
.|-+..+.+.+.+.+-....+|+.+.-++.|.- -.|... .-..+.+++-+...+.++.+... .+.++++....++|
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~-vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG 116 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVD-VELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIG 116 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHH-HHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 455666666666655555555555554444321 111000 00111122222222223233322 34567777777788
Q ss_pred HHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh--ccCCCcchhHHHHHHHHHHHH
Q 037413 387 ITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT--SSRHSTATGISLMGIMIVCCT 453 (530)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 453 (530)
.-.|.-.|..+.+.+.-..+.. ...+.....-++|+..+..++.. ..+.+.-.+-...+++-++.+
T Consensus 117 ~LVG~EiPL~mrml~~r~a~~k-~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aA 184 (508)
T COG4262 117 VLVGAEIPLLMRMLQRRQAKAK-DLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAA 184 (508)
T ss_pred HHHhcchHHHHHHHHHHHHHHH-hhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Confidence 8788777877776554111111 12222233366777666666544 233443333333444444333
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.15 Score=48.21 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHHHH---HHHHH----------HhhhhHHHHHHHHHHHHhhhhh-
Q 037413 103 AGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLSAP---TVFSM----------VFVSSARGYIAARFMIGFSLAT- 167 (530)
Q Consensus 103 ~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~---~~~~~----------~~~~~~~~l~~~r~l~G~~~~~- 167 (530)
...+|.++-.+|....++..=+- .+|++. +..+.-.+ ..++| .+.+|-+..++.-++.|+..|-
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 46678888888888777632111 244433 33222221 11222 1223556777888999999995
Q ss_pred hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhH
Q 037413 168 FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLL 205 (530)
Q Consensus 168 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 205 (530)
...+..+..+..++++|..+-.+......+|..+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888899999999888877777777777666654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=88.29 E-value=3.6 Score=42.02 Aligned_cols=26 Identities=4% Similarity=0.017 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccCCC
Q 037413 321 AATFGMANIFARPLGGLMSDMAARPF 346 (530)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~dr~~~r~ 346 (530)
...+.+.+.++..+++++...++.++
T Consensus 303 i~~y~~~~~iaGy~S~~~yk~~~g~~ 328 (521)
T PF02990_consen 303 IILYALTSFIAGYVSARLYKSFGGKK 328 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence 33555666666677777777676653
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.29 E-value=2.6 Score=39.93 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhccccccchHHHHHhcCC-ChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHH
Q 037413 68 SWLSFFTCFVSTFAAAPLVPIIRDNLNL-IKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVF 143 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 143 (530)
+.+++++.....-++.........+++- |-...+.-...-.....+..++.|...|+..|+|++...+++--++..
T Consensus 32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~ 108 (503)
T KOG2601|consen 32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI 108 (503)
T ss_pred hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence 4445554444433343344444444442 222233333333445566778888999999999998877665444333
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=44 Score=34.69 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCC
Q 037413 312 LKLHTAGVIAATFGMANIFARPLGGLMSDMAARP 345 (530)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r 345 (530)
-+....+..+..++++..+--++.+....|+.+|
T Consensus 322 g~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk 355 (571)
T PRK00293 322 GDLLLGGLTLYLLALGMGLPLILITTFGNKLLPK 355 (571)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555666666766655555555555554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.9 Score=42.07 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccc-cccc---ccccchhhhhhhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHHH
Q 037413 376 PLSILSMILFSITTQAACGATFGIIP-FISR---RSLGVISGLTGAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMIV 450 (530)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~---~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 450 (530)
+.+++++.+.++|.|+.-+...++.. .+++ +++...+..+....++|+.+++.+.+. .++.++..+|.+..+..+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 57788888899999999888888743 4443 356667778888889999999888766 446666666666555555
Q ss_pred HHHH
Q 037413 451 CCTF 454 (530)
Q Consensus 451 ~~~~ 454 (530)
++.+
T Consensus 114 ~~~~ 117 (372)
T PF00854_consen 114 LALI 117 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.53 E-value=14 Score=33.51 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhCCc--hhhHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHHhhhhh-hh
Q 037413 100 IGNAGIASVSGSIFSRLVMGAVCDLLGPR--YGCAFLIMLSAPTVFSMVFV----S---SARGYIAARFMIGFSLAT-FV 169 (530)
Q Consensus 100 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~~~-~~ 169 (530)
-|.+++.+++...+|+-+..++..|-..| ..+.+..++.++...+..+. + +...=+++-.+.-.+.|. +|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48899999999999999998888876544 45555555555444443322 1 122224455555667775 78
Q ss_pred hHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 037413 170 SCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILV 242 (530)
Q Consensus 170 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (530)
....+-++..|+++|...+.++-.-.++=..+ .+.. . +.. .-..+-|..|-++.+...+..+..
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvCl------vLyn-l-h~~-~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCL------VLYN-L-HVD-AFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhh------hhee-c-ccc-cCccccchhhhhhHHHHHHHHHHH
Confidence 88889999999999999888775433321111 1111 0 000 011256788888877666554443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.30 E-value=23 Score=33.96 Aligned_cols=88 Identities=14% Similarity=0.022 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHH
Q 037413 283 IFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 362 (530)
.+.+.+++....--.+..-...|+.+..|-+....+....+-+....+...+.|...|+..|+|..+..+.+--.+.+++
T Consensus 31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~va 110 (503)
T KOG2601|consen 31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVA 110 (503)
T ss_pred hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHH
Confidence 33344444443333444445556666666565555555555555555556666777899988865444444444455555
Q ss_pred HHHHHHhh
Q 037413 363 GIFCICLG 370 (530)
Q Consensus 363 ~~~~~~~~ 370 (530)
+..++.+.
T Consensus 111 gglvi~~l 118 (503)
T KOG2601|consen 111 GGLVITLL 118 (503)
T ss_pred HHHHhhhe
Confidence 55444443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.33 E-value=5.5 Score=36.85 Aligned_cols=135 Identities=15% Similarity=0.079 Sum_probs=84.5
Q ss_pred HHHHHHHHhhhhccccccch--HHHHHhcCCCh-hhHHHHHHHHHHHHHHhhhhhHHHhhhhCCc--h---hhHHHHHHH
Q 037413 67 LSWLSFFTCFVSTFAAAPLV--PIIRDNLNLIK-TDIGNAGIASVSGSIFSRLVMGAVCDLLGPR--Y---GCAFLIMLS 138 (530)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~---~l~~~~~~~ 138 (530)
-++..++..++.+....+.+ |- ...+..+. .|.-|....|.+|..+..--.-. +--+ + .+..-.+++
T Consensus 255 PL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~----~~~p~l~~LailQ~vNl~f 329 (409)
T KOG3880|consen 255 PLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRSSINL----FTMPYLWLLAILQFVNLLF 329 (409)
T ss_pred HHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEeccceE----EechHHHHHHHHHHHHHHH
Confidence 34566666666665554322 21 34444443 45778888877664432211110 1111 1 122233344
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHH
Q 037413 139 APTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLT 206 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 206 (530)
.+.-.+..+.+++|..++.-+..|+-.|. +.-..--+.+-.++++|..+++.....-++|..++.+++
T Consensus 330 f~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 330 FLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 44455566789999999999999999885 777777777777888999999999888888886665443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.21 E-value=47 Score=31.58 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=69.3
Q ss_pred HHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH-------HHHHHHh--hhhHHHHHHH
Q 037413 88 IIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP-------TVFSMVF--VSSARGYIAA 157 (530)
Q Consensus 88 ~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-------~~~~~~~--~~~~~~l~~~ 157 (530)
.+... +|-+.-|.+.+.+.|.....+|+...-++.|.--.-+.+..-.++..+ ..+.+++ .++-+.++++
T Consensus 32 tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~l 111 (508)
T COG4262 32 TLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYAL 111 (508)
T ss_pred HHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHH
Confidence 34444 355667889999999999999998888877754322222221211111 1112221 2466788888
Q ss_pred HHHHHhhhhh-hhhHHHHHhhhc-cCCcchhhHhHhhhhhhhhhhhHHhHHHHH
Q 037413 158 RFMIGFSLAT-FVSCQYWMSTMF-NGKIIGLVNGTAAGWGNMGGGITQLLTPFI 209 (530)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 209 (530)
-++.|.-.|. .|..+.++.... ..+.-+ +.....-.+|...+.++-|++
T Consensus 112 t~vIG~LVG~EiPL~mrml~~r~a~~k~~~---s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 112 TAVIGVLVGAEIPLLMRMLQRRQAKAKDLG---SRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhh---hhhhhhHhhhhhhHHHHHHHH
Confidence 9999999997 788777766522 222111 122222466776666555544
|
|
| >PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine | Back alignment and domain information |
|---|
Probab=81.90 E-value=33 Score=29.57 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHhhhchhHHHHHH
Q 037413 271 VLWYAITNYRTWIFVL 286 (530)
Q Consensus 271 ~~~~~~~~~~~~~~~~ 286 (530)
.+.--+.||+.+...+
T Consensus 104 g~~~~~~NPk~il~~~ 119 (191)
T PF01810_consen 104 GFLLNLLNPKAILFWL 119 (191)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333445666554443
|
A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 530 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 1e-18 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 74/427 (17%), Positives = 132/427 (30%), Gaps = 55/427 (12%)
Query: 69 WLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVS-GSIFS---------RLVM 118
W F F A ++R N L + G + G S + +M
Sbjct: 27 WQIFLGIFFGYAAYY----LVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIM 82
Query: 119 GAVCDLLGPRYGCAFLIMLSAPTVFSMVFV----SSARGYIAARFMIGFSLAT-FVSCQ- 172
G+V D PR ++L+A + M FV SS F+ G+ + C
Sbjct: 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR 142
Query: 173 ---YWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFF 229
+W S G I+ + N N+GGGI LL F W A +
Sbjct: 143 TMVHWWSQKERGGIVSVWNCAH----NVGGGIPPLLFLLGMAW--------FNDWHAALY 190
Query: 230 APGCLHVIMGILVLTLGQDLPD------------GNLNTLQKKGDVPTDKFPKVLWYAIT 277
P +++ + + +D P + +K + + Y +
Sbjct: 191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250
Query: 278 NYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGL 337
N W + + I + Y + + L + + A I L G
Sbjct: 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310
Query: 338 MSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATF 397
MSD R G RG ++ + A + ++ MI+
Sbjct: 311 MSDKVFR--GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP-VMLI 367
Query: 398 GIIP--FISRRSLGVISGLTGAGGNFGSGLTQLL---FFTSSRHSTATGISLMGIMIVCC 452
G+ +++ G +G TG G G + + + ++G I+
Sbjct: 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427
Query: 453 TFPVALV 459
+ ++
Sbjct: 428 ILLIVVM 434
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 530 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.4 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.37 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.34 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.26 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.18 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=327.58 Aligned_cols=379 Identities=17% Similarity=0.168 Sum_probs=309.7
Q ss_pred cchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHH
Q 037413 60 PHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSA 139 (530)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 139 (530)
.+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3567777888888889989899999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 140 PTVFSMVF----VSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 140 ~~~~~~~~----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
++.+++++ ++|++.++++|+++|++.+. .+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~- 182 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF- 182 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 99999999 99999999999999999996 7888999999999999999999999999999999998888877655
Q ss_pred hcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCC-----------CCCChhHH-HHHhhhchhH
Q 037413 215 RAGATPFTA-WRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDV-----------PTDKFPKV-LWYAITNYRT 281 (530)
Q Consensus 215 ~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~ 281 (530)
+ ||++|++.+++.++..++.+++.||.|+..+...+++.++ ++.+..+. .++.+++|.+
T Consensus 183 --------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 183 --------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp --------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence 7 9999999999988888888888887765432111111000 01112222 4677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhc--cCCCCCcchhHHHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMA--ARPFGMRGRLWNLYIVQ 359 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~r~~~~~~~~~~~~~~ 359 (530)
+...+..++.......+..++|.|+.+.+|++..+.+++.+...++.+++.++.+++.||+ ++|+ ...++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-------~~~~~~ 327 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-------ATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-------hHHHHH
Confidence 9999988888888888899999999988999999999999999999999999999999999 7763 333443
Q ss_pred HHHH-HHHHHhhcC--CcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhH-HHHhhhhhhhh-c
Q 037413 360 TLGG-IFCICLGRA--STLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNF-GSGLTQLLFFT-S 433 (530)
Q Consensus 360 ~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~~~-~ 433 (530)
.+.. ++++++... .+.+......++.|++.+...+....+. +..|++.+|++.|+.+...++ |..++|.+.+. .
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 444444443 3566677777778888777777777774 567778899999999999999 99999999887 5
Q ss_pred cCCCcchhHHHHHHHHHHHHHH
Q 037413 434 SRHSTATGISLMGIMIVCCTFP 455 (530)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~ 455 (530)
+..++...+...+++.+++.++
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHH
Confidence 5566666666665555554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=310.90 Aligned_cols=370 Identities=13% Similarity=0.073 Sum_probs=294.7
Q ss_pred chHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHH
Q 037413 61 HMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAP 140 (530)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 140 (530)
++..+..+++.++...++....++..|.+.+++|++..+.|++.+++.+++.++.+++|+++||+|||+++.++.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 56667777788888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHH-HHHHh
Q 037413 141 TVFSM---VFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIY-ELIRR 215 (530)
Q Consensus 141 ~~~~~---~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~~~~ 215 (530)
+.+++ +++++++.++++|+++|++.+. .+...+++.|++|+++|++++++.+.+.++|..+++.+++.+. .....
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999 8889999999999999999996 7888999999999999999999999999999999998877776 22100
Q ss_pred ----------------cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhch
Q 037413 216 ----------------AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNY 279 (530)
Q Consensus 216 ----------------~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (530)
.+.....+||+.|++.+++.++..++.++. + .||+++++ ++++++++..+.+++.+++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~-~p~~~~~~---~~~~~~~~~~~~~~~~~~~~ 258 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT-K-FPALQSDN---HSDAKQGSFSASLSRLARIR 258 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CCCCTTTC---CCCSSTTSHHHHHHHHTTCS
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-c-CCcccccc---cccccccchhhhHHHHHhCh
Confidence 000000019999998888777666554443 2 23332211 11223344567788899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHH
Q 037413 280 RTWIFVLLYGMSLGIELTIDNVIAEY-FFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIV 358 (530)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~ 358 (530)
.++...+..++..........++|.| +++.+|++..+++.+.+...++.+++.++.+++.||++||+ .+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~~~~~ 331 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-------VLAAY 331 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHH
Confidence 99999998888888888888999999 88878999999999999999999999999999999999883 55555
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccchhhhhhhhhhHHHHhhhhhhhh-ccCC
Q 037413 359 QTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGI-IPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT-SSRH 436 (530)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-~~~~ 436 (530)
.++..+.++++...++.+. ...+++.+++.+...+..+++ .+..+++ ++.+.++.. ...+|+.++|.+.|. .+..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 332 ALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5666666655555555543 444577788888888888888 5566655 788888777 677999999999887 4444
Q ss_pred C-cchhHHHH
Q 037413 437 S-TATGISLM 445 (530)
Q Consensus 437 ~-~~~~~~~~ 445 (530)
+ +...+...
T Consensus 409 g~~~~~~~~~ 418 (438)
T 3o7q_A 409 GNIPTAELIP 418 (438)
T ss_dssp TSSGGGGHHH
T ss_pred cchHHHHHHH
Confidence 4 55666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=290.41 Aligned_cols=342 Identities=13% Similarity=0.021 Sum_probs=276.0
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM 145 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 145 (530)
..+++..+...+....+.+.+|.+.+++|.++++.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 44566677777778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCch
Q 037413 146 VFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAW 224 (530)
Q Consensus 146 ~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~w 224 (530)
+++++++.+++.|+++|++.+. .+...+++.|++|+++|++++++.+...++|..+++.+++.+.+.. +|
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~ 153 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW---------NW 153 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH---------HH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc---------cH
Confidence 9999999999999999999996 7888899999999999999999999999999999998888776655 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037413 225 RIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVIAE 304 (530)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (530)
|+.|++.+++.++..++.++..||.+++++ +++ +.++.+++.+++|+++...+..++.......+..+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETRPVDA-----PRT----RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCSTTTC-----CCC----CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccCCCCc-----ccc----cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877766655555555443211 111 11223456678899998888888888888888889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHH-HHHHHHHHHhhc--CCcHHHHHHH
Q 037413 305 YFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQ-TLGGIFCICLGR--ASTLPLSILS 381 (530)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~ 381 (530)
|+++.+|.++.+.+.+.+...++.+++.++.+++.||.+++ ....... ...++.++.... .++.+...+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 99888899999999999999999999999999999998763 1111111 111111111111 1245555667
Q ss_pred HHHHHHHhhhhhccccccccccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 382 MILFSITTQAACGATFGIIPFISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 382 ~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
.++.+++.+...+...++..+..|+++|++.|+.+...++|..++|.+.+.
T Consensus 298 ~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888654444899999999999999999999999776
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=283.32 Aligned_cols=377 Identities=11% Similarity=0.021 Sum_probs=266.5
Q ss_pred HHHHHHHHHHhhhhcccc-ccchHHHHHh-----cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhh-hCCchhhHHHHHH
Q 037413 65 FHLSWLSFFTCFVSTFAA-APLVPIIRDN-----LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL-LGPRYGCAFLIML 137 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~ 137 (530)
+..+++..+......+.. ..+.+.+.++ +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 444444444444444433 3334445555 99999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCc--chhhHhHhhhhhhhhhhhHHhHHHHHHHHHH
Q 037413 138 SAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKI--IGLVNGTAAGWGNMGGGITQLLTPFIYELIR 214 (530)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~ 214 (530)
.+++.+++++++|++.++++|+++|++.+. .+...++++|++|+++ |+.++++++...++|..+++.+++.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 173 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA- 173 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 999999999999999999999999999996 7888999999999988 777888888999999999998888887765
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHH----------------------
Q 037413 215 RAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVL---------------------- 272 (530)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---------------------- 272 (530)
|||++|++.++..++..++.++..++..++..++.+. +..+++..+..
T Consensus 174 --------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ 243 (491)
T 4aps_A 174 --------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTD--PLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW 243 (491)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSC--CCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCC--ccccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999998877766665555433322111000000 00000000000
Q ss_pred ---------------------------------HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 037413 273 ---------------------------------WYAITNYRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGV 319 (530)
Q Consensus 273 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (530)
....+....+...+..++.+..+.....+++.|+.+..+.+....+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4aps_A 244 NSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW 323 (491)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG
T ss_pred cccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH
Confidence 00111122344444444445555556667888888877887667777
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHHHHHHhh
Q 037413 320 IAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGR---------ASTLPLSILSMILFSITTQ 390 (530)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~ 390 (530)
+.....+..+++.++.+++.||++||+... ...+..+..+.+++++++.. ..+.+...+..++.+++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 401 (491)
T 4aps_A 324 FQSLNPLFIMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM 401 (491)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 777888888999999999999999985321 22333444444444433322 1255666677788888888
Q ss_pred hhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhccCCCcchhHHHHHHHHHHHHH
Q 037413 391 AACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 391 ~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (530)
...+..+.++ +..|++.||++.|+.+...++|..++|.+.+...+.+....+...+.+.+++.+
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHH
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 8788787775 467788899999999999999999999998885555555555555554444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=278.19 Aligned_cols=357 Identities=12% Similarity=0.019 Sum_probs=237.6
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhcCC--------ChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDNLNL--------IKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIML 137 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 137 (530)
.+..++.++..+|...++..+|.++++++. +.++.|++.+++.+|..++++++|+++||+|||++++++.++
T Consensus 15 ~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l 94 (491)
T 4gc0_A 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344566677777888888889999888743 345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhh
Q 037413 138 SAPTVFSMV------------------FVSSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMG 198 (530)
Q Consensus 138 ~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 198 (530)
+.++.++++ +++|+++++++|+++|++.|+ .+.+..+++|+.|+++|++..++.+.+..+|
T Consensus 95 ~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 95 FFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 999999998 478999999999999999996 8899999999999999999999998888888
Q ss_pred hhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCC--------------CCC
Q 037413 199 GGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKG--------------DVP 264 (530)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------------~~~ 264 (530)
..+++.++..+.... ........+||+.+.+..+..++..+. .+..||+|+....+.+.++ .++
T Consensus 175 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~ 252 (491)
T 4gc0_A 175 QLLVYCVNYFIARSG-DASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA 252 (491)
T ss_dssp HHHHHHHHHHHHTTS-CTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhcccc-ccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH
Confidence 877766554443221 111122346888888887766655443 3344555431100000000 000
Q ss_pred CCChh---------HHHHHhhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 037413 265 TDKFP---------KVLWYAITNYRTWIFVLLYGMSLG-IELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPL 334 (530)
Q Consensus 265 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 334 (530)
..... ......++.++.........+... ....+..+.+ ++.+..+.+.........+.++..+++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4gc0_A 253 VQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVL 331 (491)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHH
Confidence 00000 000112223333333333333333 2333344444 444557888888877778888999999999
Q ss_pred hhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHh----hcCCcHHHHHHHHHHHHHHhhh-hhccccccc-cccccccc
Q 037413 335 GGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICL----GRASTLPLSILSMILFSITTQA-ACGATFGII-PFISRRSL 408 (530)
Q Consensus 335 ~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~-~~~~~~~~ 408 (530)
++++.||+|||+ ....+.....++++.+ ......+...+..+++..+.+. ..+..+.+. +.+|++.|
T Consensus 332 ~~~l~dr~Grr~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 332 AIMTVDKFGRKP-------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHCSHH-------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHhhcCcc-------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 999999999984 3333333333322222 1222333333333333333333 334556665 46677899
Q ss_pred cchhhhhhhhhhHHHHhhhhhhhh
Q 037413 409 GVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 409 g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+++.|+.+.++++++++++.+++.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=257.25 Aligned_cols=364 Identities=15% Similarity=0.121 Sum_probs=237.2
Q ss_pred HHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHH---H
Q 037413 68 SWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTV---F 143 (530)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~ 143 (530)
.....+..+.......+.+|. +++++|++..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++. +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333333444444444556666 567799999999999999999999999999999999999999999888776532 2
Q ss_pred HHHhhhhHH-HHHHHHHHHHhhhhh-hhhHHHHHhhhccC--CcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 144 SMVFVSSAR-GYIAARFMIGFSLAT-FVSCQYWMSTMFNG--KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 144 ~~~~~~~~~-~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
...+++... .++..+++.|++.+. ++.....+.++.++ ++++...+......++|..+++.+++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~------- 164 (417)
T 2cfq_A 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI------- 164 (417)
T ss_dssp HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 222332221 234556666666553 33333444444432 3567778888888899999999888877653
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTID 299 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
+||+.|++.+++.++..+..++..||+|+..+++ ++++.+.++...+.+++.+++|+++...+..++....+..+.
T Consensus 165 ---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 165 ---NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp ---CSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSS-SSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHcCcccccccccc-cccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 8999999887765444433333223322211000 110111111223456778899998877766555555555666
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcCCcHH
Q 037413 300 NVIAEYFFDRFNL---KLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRASTLP 376 (530)
Q Consensus 300 ~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
+++|.|+.+.++. +....+++.++..++.+++.++.++++||++||+ .+..+..+.++.++.+...++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~ 313 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-------ALLLAGTIMSVRIIGSSFATSAL 313 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-------HHHHHHHHHHHHHHHHHHhccHH
Confidence 6788888765542 2345567777778888899999999999999883 44455555555555555556666
Q ss_pred HHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhh-hhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHH
Q 037413 377 LSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLT-GAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMI 449 (530)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 449 (530)
...+..++.+++.+...+..+.+++ ..|++.||++.++. +....+|++++|.+.|. .+..++...+...+++.
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 5555555566665555555566654 66778899999994 88888999999999887 34444444444434333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=246.87 Aligned_cols=356 Identities=13% Similarity=0.068 Sum_probs=221.9
Q ss_pred HHHHHHhhhhccccccch-HHHHHhcC------CChhhHHHHHHHHHHHHHHhhhhhHHHhhhh-CCchhhHHHHHHHHH
Q 037413 69 WLSFFTCFVSTFAAAPLV-PIIRDNLN------LIKTDIGNAGIASVSGSIFSRLVMGAVCDLL-GPRYGCAFLIMLSAP 140 (530)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~ 140 (530)
++..+......+...+.+ +.+.+++| ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333333333433333334 45778899 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-hHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhH---hhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 141 TVFSMVFVS-SARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGT---AAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 141 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
+.++.++++ +++.++++|+++|++.+. .+...+++.|++|+++|+++.+. .....++|..+++.+++.+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-- 175 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-- 175 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 999999999 999999999999999996 78889999999999999876666 88888899988888877776543
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCC--------CCCCChhHH----------------
Q 037413 216 AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGD--------VPTDKFPKV---------------- 271 (530)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------~~~~~~~~~---------------- 271 (530)
+||++|++.+++.++..++.++..++.++.+.++....+. +++....+.
T Consensus 176 -------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (524)
T 2xut_A 176 -------GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYA 248 (524)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHT
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhh
Confidence 9999999998887766555444333222111100000000 000000000
Q ss_pred -------------------------------HH---------HhhhchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 037413 272 -------------------------------LW---------YAITNYRTWIFVLLYGM---SLGIELTIDNVIAEYFFD 308 (530)
Q Consensus 272 -------------------------------~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 308 (530)
.. .....++.+........ .+..+......++.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 249 LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 00 00011222212111111 111111111123333222
Q ss_pred hcCCCH-HHHHHHHHHHHHHHHhhhhhhhHhh-hhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC---------CcHHH
Q 037413 309 RFNLKL-HTAGVIAATFGMANIFARPLGGLMS-DMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA---------STLPL 377 (530)
Q Consensus 309 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~-dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 377 (530)
.+.+. ...+.+.....++.+++..+.+++. ++.+||.........+.++..+.+++++++... .+.+.
T Consensus 329 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (524)
T 2xut_A 329 -MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFW 407 (524)
T ss_dssp -SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHH
T ss_pred -cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 23221 1244444444444444455555443 222222100112233445555555555554432 35556
Q ss_pred HHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHHHHhhhhhhhhcc
Q 037413 378 SILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFGSGLTQLLFFTSS 434 (530)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~ 434 (530)
..+..++.+++.+...+..+.++ +..|++.||+++|+.+...++|+.++|.+.+...
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777888888888888888875 4677889999999999999999999999988743
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=138.52 Aligned_cols=173 Identities=12% Similarity=0.135 Sum_probs=139.8
Q ss_pred HHHHHHHHHHhhhhccccccchHHHHHh-cCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhh--CCchhhHHHHHHHH-H
Q 037413 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDN-LNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLL--GPRYGCAFLIMLSA-P 140 (530)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~ 140 (530)
+....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3334444444444444455566665555 899999999999999999999999999999999 99999988887776 6
Q ss_pred HHHHHHhh--hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhh-hhhhHHhHHHHHHHHHHhc
Q 037413 141 TVFSMVFV--SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNM-GGGITQLLTPFIYELIRRA 216 (530)
Q Consensus 141 ~~~~~~~~--~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~~ 216 (530)
+.++..+. .+.+.+++..++.|++.+. .+....++.|.+|+++|++++|+.+....+ |..+++.+.+.+.+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--- 410 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--- 410 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 66666665 4788888888999998885 677789999999999999999999999999 9999998888877654
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 037413 217 GATPFTAWRIAFFAPGCLHVIMGILVLTLG 246 (530)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 246 (530)
||+..|++.+++.++..++.++..
T Consensus 411 ------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 411 ------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988887777666653
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=127.58 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhh-ccCCCCCcchh
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDR-----FNLKLHTAGVIAATFGMANIFARPLGGLMSDM-AARPFGMRGRL 352 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~r~~~~~~~ 352 (530)
+.++...+..++....++....+++.|+.+. +|.+..+.+++.+...++..++.++.|+++|| +|||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------- 85 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------- 85 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence 3566666667777777788888999999988 99999999999999999999999999999999 8998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-cccccc--ccchhhhhhhhhhHHHHhhhhh
Q 037413 353 WNLYIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRS--LGVISGLTGAGGNFGSGLTQLL 429 (530)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--~g~~~g~~~~~~~~g~~~~~~~ 429 (530)
..+..+.++.+++.++....++.+.+++..++.|++.+...+...+++. .+++++ |+.+.++.+...++|..++|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 3677777777777777777888888888888999999888888888855 566766 7778888999999999999999
Q ss_pred hhh-ccCCCcchhHHHHHHHHHHHHH
Q 037413 430 FFT-SSRHSTATGISLMGIMIVCCTF 454 (530)
Q Consensus 430 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 454 (530)
.+. .+..++...+...++..+++.+
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 877 4456666666665544444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-12 Score=123.92 Aligned_cols=146 Identities=11% Similarity=0.066 Sum_probs=119.6
Q ss_pred ccccchHHH--HHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037413 81 AAAPLVPII--RDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAAR 158 (530)
Q Consensus 81 ~~~~~~~~~--~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (530)
......|.+ ++.+|.+..+.+++.+.+.++..++.++.|++.||+|||+++.++.++.+++.++..+.++.+.++..
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 354 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL- 354 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-
Confidence 333344544 45569999999999999999999999999999999999999999999999999998888887765554
Q ss_pred HHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCc-hhHHHHHHHHHHH
Q 037413 159 FMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTA-WRIAFFAPGCLHV 236 (530)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~-wr~~f~~~~~~~~ 236 (530)
++.|++.+. ++....+..|.+|++ ++.+.++.. ...+|..+++.+.+.+.+.. | ++..|++.++..+
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---------g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---------GNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---------TSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHH
Confidence 888888885 788888889999865 888888776 56689999998888888876 7 8999887765544
Q ss_pred HH
Q 037413 237 IM 238 (530)
Q Consensus 237 ~~ 238 (530)
+.
T Consensus 424 ~~ 425 (438)
T 3o7q_A 424 VI 425 (438)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-12 Score=123.85 Aligned_cols=143 Identities=10% Similarity=0.124 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHHHHH
Q 037413 97 KTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQYWM 175 (530)
Q Consensus 97 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i 175 (530)
..+.+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+. .+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888775 56667899
Q ss_pred hhhccCCcchhhHhH-hhhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccC
Q 037413 176 STMFNGKIIGLVNGT-AAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQD 248 (530)
Q Consensus 176 ~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (530)
.|.+|++.|+.+.++ ++....+|..++|.+++.+.+.. |++..|.+.+++.++..++.++..++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999998 47788899999999888887754 78999999888888777766665554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-11 Score=121.59 Aligned_cols=185 Identities=13% Similarity=0.069 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHH
Q 037413 66 HLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSM 145 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 145 (530)
.......+........+....+.+.+..+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence 33333333333334444455677888888888888888888888999999999999999999999999998888877766
Q ss_pred Hhh----hhHHHHHHHHHH--HHhhhhhhhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHhcCCC
Q 037413 146 VFV----SSARGYIAARFM--IGFSLATFVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGAT 219 (530)
Q Consensus 146 ~~~----~~~~~l~~~r~l--~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 219 (530)
+.. .+.+..++.-++ .+.+.+..+....+.+|.+|.+.|+.++|+......+|..+++.+.|.+.......
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~--- 436 (491)
T 4gc0_A 360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV--- 436 (491)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH---
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 543 122222222222 23333335667789999999999999999999999999999888877764432100
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 037413 220 PFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGN 253 (530)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 253 (530)
...++.+.|++.++++++..++.++++||+..+.
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 0115678899999999999998888887765543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-11 Score=120.21 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=128.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhhhhhhhHhhhhc-cCCCCCcch
Q 037413 279 YRTWIFVLLYGMSLGIELTIDNVIAEYFFDRFN------LKLHTAGVIAATFGMANIFARPLGGLMSDMA-ARPFGMRGR 351 (530)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~r~~~~~~ 351 (530)
+.+|.+.+..++....++....+++.|+.+.+| .+..+.+++.+...++..++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 456666677777777777888899999998889 9999999999999999999999999999999 9983
Q ss_pred hHHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhh---hhhhhhHHHHhh
Q 037413 352 LWNLYIVQTLGGIFCICLGRAS-TLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGL---TGAGGNFGSGLT 426 (530)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~---~~~~~~~g~~~~ 426 (530)
.+.++.++.+++.++....+ +.+..++..++.|++.+...+...+++. .+++++|++..+. .+...++|..++
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667666666666 8888888888899999888888888854 6677888766666 888889999999
Q ss_pred hhhhhh-ccCCCcchhHHHHHHH
Q 037413 427 QLLFFT-SSRHSTATGISLMGIM 448 (530)
Q Consensus 427 ~~~~~~-~~~~~~~~~~~~~~~~ 448 (530)
|.+.+. .+..++...+...+++
T Consensus 165 ~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 165 SLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp HHTSTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHH
Confidence 999776 4445555555544444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-11 Score=114.16 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHH
Q 037413 284 FVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGG 363 (530)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 363 (530)
+.+..++.......+...+|.+ .+.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~ 76 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP-------VILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hHHHHHHHHH
Confidence 3444444444555555566654 4558999999999999999999999999999999999986 3334455555
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHhhhhhcccccccc-ccccccccchhhhhhhhhhHHHHhhhhhhhh
Q 037413 364 IFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP-FISRRSLGVISGLTGAGGNFGSGLTQLLFFT 432 (530)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~ 432 (530)
+..++....++.+..++..++.|++.+...+...+++. ..++++|+++.++.+....+|..++|.+.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555567777888888889998888888888755 5677899999999999999999999999877
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 530 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-11 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (153), Expect = 2e-11
Identities = 66/406 (16%), Positives = 129/406 (31%), Gaps = 11/406 (2%)
Query: 65 FHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDL 124
F + + ++ A +P + + + D+G A FS+ +MG+V D
Sbjct: 27 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDR 85
Query: 125 LGPRYGCAFLIMLSAPTVFSMVFVSSARG----YIAARFMIGF-SLATFVSCQYWMSTMF 179
PR ++L+A + M FV A F+ G+ + C M +
Sbjct: 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 145
Query: 180 NGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWR----IAFFAPGCLH 235
+ K G + N+GGGI LL A + +A FA +
Sbjct: 146 SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205
Query: 236 VIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295
L ++ + + +K + + Y + N W + +
Sbjct: 206 DTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 265
Query: 296 LTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNL 355
I + Y + + L + + A I L G MSD R ++ +
Sbjct: 266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325
Query: 356 YIVQTLGGIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIPFISRRSLGVISGLT 415
+V ++ + T+ + + +I F I + +++ G +G T
Sbjct: 326 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH-ALELAPKKAAGTAAGFT 384
Query: 416 GAGGNFGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHF 461
G G G + + M ++ + L+
Sbjct: 385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 49/418 (11%), Positives = 105/418 (25%), Gaps = 11/418 (2%)
Query: 64 TFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVC 122
F + L FF F A P PI + D ++ K+D G A S+ + + G +
Sbjct: 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67
Query: 123 DLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLATFVSCQYWMSTMFNGK 182
D LG R ++I + + + + +
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI-VGGIYLGFCFNAGAPAVE 126
Query: 183 IIGLVNGTAAGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILV 242
+ + + + + I T + + L + + +
Sbjct: 127 AFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186
Query: 243 LTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIELTIDNVI 302
N + + K L+ + ++V+ + +
Sbjct: 187 AKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246
Query: 303 AEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLG 362
FF G + + N G L + T+
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP-------LIINRIGGKNALLLAGTIM 299
Query: 363 GIFCICLGRASTLPLSILSMILFSITTQAACGATFGIIP--FISRRSLGVISGLTGAGGN 420
+ I A++ ++ L F I F R S +
Sbjct: 300 SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKS 478
+L G L+ ++ +++ G + L + +E +
Sbjct: 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA 417
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 530 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.51 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.35 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-39 Score=319.68 Aligned_cols=387 Identities=18% Similarity=0.182 Sum_probs=305.0
Q ss_pred CcchHHHHHHHHHHHHhhhhccccccchHHHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHH
Q 037413 59 SPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLS 138 (530)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 138 (530)
+.+|..+..++++++..++++..++.+.|.++ |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 34677888888899999999888888888775 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHHHhhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhhhhhhHHhHHHHHHHHH
Q 037413 139 APTVFSMVFV----SSARGYIAARFMIGFSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGITQLLTPFIYELI 213 (530)
Q Consensus 139 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 213 (530)
+++.++++++ ++++.+++.|++.|++.+. ++....++.|++|+++|++++++.+.+..+|..+++.+++.+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999998876 4778999999999999996 7888999999999999999999999999999998888777665543
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCC------------CCCCCChhHHHHHhhhchhH
Q 037413 214 RRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKG------------DVPTDKFPKVLWYAITNYRT 281 (530)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 281 (530)
.+||+.|++.+++.++..++.+++.++.|++......++. +++........+..++++.+
T Consensus 180 --------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (447)
T d1pw4a_ 180 --------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 251 (447)
T ss_dssp --------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred --------hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchH
Confidence 1899999999999999999888888887765422111110 11111223445677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHH
Q 037413 282 WIFVLLYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTL 361 (530)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~ 361 (530)
+......++.....+....+.+.|+.+..+.+..+.+....+..+..+++.++.|++.||++|+. +.........+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~ 327 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN----RGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----HHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc----cccccchhHHH
Confidence 99998888888888888999999999999999999999999999999999999999999999874 22222222223
Q ss_pred HHHHHHHhh--cCCcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhhhhhhhHH-HHhhhhhhhh-ccCC
Q 037413 362 GGIFCICLG--RASTLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLTGAGGNFG-SGLTQLLFFT-SSRH 436 (530)
Q Consensus 362 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g-~~~~~~~~~~-~~~~ 436 (530)
..+...... ...+.+...+..++.+++.+...+....+. +..|++.+|++.|+.+.+.+++ .+++|.+.+. .+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 328 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333322 334566677777777887777777776664 4677888999999999988875 4667888776 5667
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 037413 437 STATGISLMGIMIVCCTFPVAL 458 (530)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~ 458 (530)
++...+.....+.+++.++...
T Consensus 408 g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 408 GWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665555555444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.8e-28 Score=236.93 Aligned_cols=374 Identities=14% Similarity=0.095 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHhhhhccccccchHH-HHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHH
Q 037413 64 TFHLSWLSFFTCFVSTFAAAPLVPI-IRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTV 142 (530)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 142 (530)
.++.+.+.++..++......+.+|. +++++|+|.+++|++.+++.+++.++++++|+++||+|||++++++..+..++.
T Consensus 8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~ 87 (417)
T d1pv7a_ 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3445555556666666666677776 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHH----HHHHHHHHhhhhh-hhhHHHHHhhhccC--CcchhhHhHhhhhhhhhhhhHHhHHHHHHHHHHh
Q 037413 143 FSMVFVSSARGY----IAARFMIGFSLAT-FVSCQYWMSTMFNG--KIIGLVNGTAAGWGNMGGGITQLLTPFIYELIRR 215 (530)
Q Consensus 143 ~~~~~~~~~~~l----~~~r~l~G~~~~~-~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 215 (530)
++..+..+.... ++.+++.+.+.+. .........+..++ +++.+..+........|..+++.+++.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 164 (417)
T d1pv7a_ 88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--- 164 (417)
T ss_dssp HHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---
Confidence 888887666554 3444554544443 33333333333222 2445666777777788888888888777665
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCCCChhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 037413 216 AGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPDGNLNTLQKKGDVPTDKFPKVLWYAITNYRTWIFVLLYGMSLGIE 295 (530)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (530)
+|++.+........+..++.++..++.|+..+++.+++... +........+..+++..+.............
T Consensus 165 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (417)
T d1pv7a_ 165 -------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH-SAFSLKLALELFRQPKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC-CCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred -------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc-ccccccccccccccccccchhhhhHHHHHHH
Confidence 78888888888777777777777777665543332222222 2222344455555555555544444443333
Q ss_pred HHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCcchhHHHHHHHHHHHHHHHHhhcC
Q 037413 296 LTIDNVIAEYFFD---RFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPFGMRGRLWNLYIVQTLGGIFCICLGRA 372 (530)
Q Consensus 296 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (530)
.......+.+... ..+.+....+.......++..++..+.+++.||.++| ..+.++..+.++..+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-------~~~~~~~~~~~~~~~~~~~~ 309 (417)
T d1pv7a_ 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-------NALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHTC
T ss_pred Hhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc-------cchhhhHHHHHHhhhccccc
Confidence 3333333333222 2233445666777788888999999999999999987 36667777777777778888
Q ss_pred CcHHHHHHHHHHHHHHhhhhhccccccc-cccccccccchhhhh-hhhhhHHHHhhhhhhhh-ccCCCcchhHHHHHHHH
Q 037413 373 STLPLSILSMILFSITTQAACGATFGII-PFISRRSLGVISGLT-GAGGNFGSGLTQLLFFT-SSRHSTATGISLMGIMI 449 (530)
Q Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 449 (530)
++.+..++..++.+++.+...+...+++ +.+|++.|+++.|+. +....+|..++|.+.|. .+..++...+.+.+++.
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 8888888888899999988888888885 477888999999985 45667899999999877 55666666666666555
Q ss_pred HHHHHH
Q 037413 450 VCCTFP 455 (530)
Q Consensus 450 ~~~~~~ 455 (530)
++..++
T Consensus 390 ~~~~~~ 395 (417)
T d1pv7a_ 390 LGFTLI 395 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=3.4e-14 Score=136.82 Aligned_cols=146 Identities=10% Similarity=0.116 Sum_probs=130.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh-hhhHH
Q 037413 94 NLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSARGYIAARFMIGFSLAT-FVSCQ 172 (530)
Q Consensus 94 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~ 172 (530)
+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+. .+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34556677888888999999999999999999999999999999999999999999999999999999999996 78888
Q ss_pred HHHhhhccCCcchhhHhHh-hhhhhhhhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhccC
Q 037413 173 YWMSTMFNGKIIGLVNGTA-AGWGNMGGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQD 248 (530)
Q Consensus 173 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (530)
.++.|.+|+++|+++.++. +....+|..+++.+.+.+.+.. ||++.|++.+++.++..++.++.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---------g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 4566789999999999998887 99999999999988888877777654
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.8e-12 Score=123.97 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=115.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHhhhhhHHHhhhhCCchhhHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHH
Q 037413 88 IIRDNLNLIKTDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMV-----FVSSARGYIAARFMIG 162 (530)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G 162 (530)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+..+... ...+.+..+++-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999988655444443333222222 2357788888888889
Q ss_pred hhhhh-hhhHHHHHhhhccCCcchhhHhHhhhhhhh-hhhhHHhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 037413 163 FSLAT-FVSCQYWMSTMFNGKIIGLVNGTAAGWGNM-GGGITQLLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGI 240 (530)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 240 (530)
++.+. .+....+..|.+|++.|+.++|+.+...++ |..+++.+.+.+.+.. ||+..|++.+...++..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~---------g~~~~~~~~~~~~~~~~~ 425 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---------GWDGGFMVMIGGSILAVI 425 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---------CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ChHHHHHHHHHHHHHHHH
Confidence 88875 677778999999999999999998777666 4556677666666544 999999988887777766
Q ss_pred HHHHhcc
Q 037413 241 LVLTLGQ 247 (530)
Q Consensus 241 ~~~~~~~ 247 (530)
+.+++.+
T Consensus 426 ~~~~~~~ 432 (447)
T d1pw4a_ 426 LLIVVMI 432 (447)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|