Citrus Sinensis ID: 037418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLLF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccHEEHccEEEEEcccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAvsyeykpecigegqKILFYTALGLIAFGMSghlvsiggfmadqmtdsrAEQVSMRSAKLFFFSFCGVVLVPIIALiafpyikpwkirfgipAIFTVVATLVFLsgtcsyrrrkplgspltTVFRVFVASALKLFYRiprnaselyerdnvdeiYVVQHTRSLRCLDKAAiilpdktleqqegnrwrlCRVTEIEETKGLLRMIPICLTfiipgvvssiGFTYFLEQADHLnrkvgklsvplpILLLFYDIARTQFTNLYAKFLNSfgesqskkyapaiGFATSMVLAILCCITAAKVETRRLDVirshglidkpddkipmsmfWLLPQFLLLGGFDGVCEVSIAcffidqfppllf
Flexible Loop (DISEMBL)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTcsyrrrkplgsplttVFRVFVASALKLFYRIPrnaselyerdnvDEIYVVQHTRSLRCLDKAAIIlpdktleqqegnrwrlcRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVetrrldvirshglidkpddkipMSMFWLLPQFLLLGGFDGVCEVSIACFFIdqfppllf
Low Complexity Region (SEG)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMllvsslaysavsyEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLLF
Disordered region (IsUnstruct)
*FWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQM********SMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPP***
Disordered Region (DISOPRED)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTD*******MRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRN********************SLRCLDKAA******************CRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLLF
Disordered Region (DISEMBL)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLLF
Disordered Region (DISPRO)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP****
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
O80436	521	Putative peptide/nitrate	yes	no	0.978	0.802	0.442	9e-90
Q9M1I2	555	Probable peptide/nitrate	no	no	0.960	0.738	0.315	6e-47
P46032	585	Peptide transporter PTR2	no	no	0.955	0.697	0.312	7e-46
Q9LFB8	570	Peptide transporter PTR5	no	no	0.957	0.717	0.283	6e-43
Q9M390	570	Peptide transporter PTR1	no	no	0.976	0.731	0.284	2e-42
P0CI03	575	Putative peptide/nitrate	no	no	0.925	0.686	0.291	7e-42
Q9M331	602	Probable peptide/nitrate	no	no	0.936	0.664	0.280	8e-38
Q0WSZ6	561	Probable peptide/nitrate	no	no	0.967	0.736	0.286	6e-37
Q9SX20	596	Probable nitrite transpor	no	no	0.922	0.661	0.306	7e-37
Q93Z20	590	Probable peptide/nitrate	no	no	0.934	0.676	0.293	2e-35

>sp|O80436|PTR29_ARATH Putative peptide/nitrate transporter At2g38100 OS=Arabidopsis thaliana GN=At2g38100 PE=2 SV=1

 Score =  330 bits (847), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 271/436 (62%), Gaps = 18/436 (4%)

Query: 1   LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW 60
           L WA   A + +W+++ YLTN  K+    AAAIVN F G   +  L +Q+LVD  IG++W
Sbjct: 4   LSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIGHFW 63

Query: 61  MLLVSSLAYSA----VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMT 116
           ML +S+LA+S     ++    P   G GQK LFY AL +I+ G+ G  +S+G F  DQ+ 
Sbjct: 64  MLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLE 123

Query: 117 DSRAEQVSMRSAKL--FFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFL 174
           D R +      AKL  F     G  +  ++A IA P I PW +RF IP+   V+A L+F+
Sbjct: 124 DGRNKG---NPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAMLIFI 180

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLR 234
           SG CSY+R KP GSPLTTVFRVF+ASA K+      N+S+LYE+   D+  +  HT SLR
Sbjct: 181 SGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQ-DIKPHTSSLR 239

Query: 235 CLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYF 294
            LD+AA+IL  ++LEQQ  NRW+LCRVTE+E+TK ++R +P+  T +I G+V S+G T+F
Sbjct: 240 YLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFF 299

Query: 295 LEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNL----YAKFLNSFGESQSKKYAPAIG 350
           LEQA+H++ K G  ++PLP+LLLF + AR     L      +    F ES  +   P  G
Sbjct: 300 LEQANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDFPESPKQTKTP-YG 358

Query: 351 FATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVC 410
              S++L+I CC  AA VE+RRL V+ + GL+    + +PMS+FWLLPQ++LLG   G+ 
Sbjct: 359 IPVSIILSIFCCSIAAHVESRRLKVVSTQGLL---HETVPMSVFWLLPQYILLGSITGIY 415

Query: 411 EVSIACFFIDQFPPLL 426
           E S A +  +  P  L
Sbjct: 416 ENSFALYLEETVPEEL 431

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 226/453 (49%), Gaps = 43/453 (9%)

Query: 4   ADIFAAYAMWV-MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWML 62
           A+ FA Y +   +IT+LTN    S   AA  +N + G   M P+   +L D+I+G +  +
Sbjct: 28  AERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPILGAFLADSILGRFKTV 87

Query: 63  LVSSLAY--SAVSYEYKPECIGEG-QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR 119
           L++S  Y    V        +    ++ +F+ AL ++A G  GH   +  F ADQ  ++ 
Sbjct: 88  LLTSFIYLLGIVMLPLSVTVVARRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEAN 147

Query: 120 AEQVSMRSAKLFFFSF--CGVVLVPIIALIAFPYIKP---WKIRFGIPAIFTVVATLVFL 174
           AE+   ++AK  FF++    +VL   IA++A  +I+    W + F I A   V+A ++FL
Sbjct: 148 AEE---KAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFL 204

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASEL-YERD--------NVDEIY 225
            G   YR++ P+GSP T V +V VA+  K      R+   L YE +        N +++Y
Sbjct: 205 IGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVY 264

Query: 226 VVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGV 285
           ++  T   R LDKA II  D+    +  N WRLC V ++EE K +LR+IPI ++ I+   
Sbjct: 265 LLARTNQFRFLDKATII--DEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCA 322

Query: 286 VSSIGFTYFLEQADHLNRKVGK------------LSVPLPILLLFYDIARTQFTNLYAKF 333
             +   T+FL+Q   ++R +G             + V + IL+  YD     F  +  K 
Sbjct: 323 TLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYD---RVFVPMVRKI 379

Query: 334 LNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSM 393
            N      S +    +G   +    ++C +    VE +RL V R HGLID P + +PMS 
Sbjct: 380 TNHHSGITSLQRI-GVGLFVATFNMVICGL----VEAKRLKVARDHGLIDSPKEVVPMSS 434

Query: 394 FWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL 426
            WLLPQ++L+G  D    V +   F DQ P  +
Sbjct: 435 LWLLPQYILVGIGDVFTIVGMQELFYDQMPETM 467

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  185 bits (469), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 205/435 (47%), Gaps = 27/435 (6%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLL---------VS 65
           +ITYLT       V AA  V  + GT  + PL    L D   G YW +          +S
Sbjct: 69  LITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMS 128

Query: 66  SLAYSAVSYEYKP-ECIGE-------GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTD 117
           +L  SA     KP ECIG+        Q  +F+  L LIA G  G    +  F ADQ  D
Sbjct: 129 ALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDD 188

Query: 118 SRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLS 175
           + + +   +++    F+FS     LV    L+     + W + FGIP +F  +A   F  
Sbjct: 189 TDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFF 248

Query: 176 GTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYV----VQHTR 231
           GT  YR +KP GSP+T + +V VAS  K   ++P +A+ LYE  + +        ++HT 
Sbjct: 249 GTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTD 308

Query: 232 SLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGF 291
             + LDKAA+I  +++      N WRLC VT++EE K L+RM PI  + II   V +   
Sbjct: 309 DCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMS 368

Query: 292 TYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGE---SQSKKYAPA 348
           T F++Q   +N K+G   +P   L  F   +   +  LY +F+           K +   
Sbjct: 369 TMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEI 428

Query: 349 IGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDG 408
                 + +++LC   AA VE  RL +    GL++     +P+S+ W +PQ+ +LG  + 
Sbjct: 429 QRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES-GAPVPISVLWQIPQYFILGAAEV 487

Query: 409 VCEVSIACFFIDQFP 423
              +    FF DQ P
Sbjct: 488 FYFIGQLEFFYDQSP 502

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  175 bits (444), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 210/438 (47%), Gaps = 29/438 (6%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLL---------VS 65
           +I YL     +  V A+  V+ + GT    PL   ++ D  +G YW +          ++
Sbjct: 53  LINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMT 112

Query: 66  SLAYSAVSYEYKPECIGE------GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR 119
            L  SA      P C GE      GQ  + + AL LIA G  G    +  F ADQ  D+ 
Sbjct: 113 LLTISASVPGLTPTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTD 172

Query: 120 AEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVFLSG 176
            ++   +S+   +F F  + +  +IA     +I+    W    G+P +   +A + F +G
Sbjct: 173 EKEKESKSSFFNWFYFV-INVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAG 231

Query: 177 TCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYV----VQHTRS 232
           +  YR +KP GSPLT + +V VAS  K   +IP + S LYE  + +   +    ++HT+ 
Sbjct: 232 SNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKI 291

Query: 233 LRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFT 292
           L   DKAA+          + + W+LC VT++EE K L+R++PI  T I+   V S   T
Sbjct: 292 LTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGT 351

Query: 293 YFLEQADHLNRKVG-KLSVPLPILLLFYDIARTQFTNLYAKFLNSFGE---SQSKKYAPA 348
            F+ Q + L++ +G    +P   L LF  ++   +  +Y K +  F        + +   
Sbjct: 352 VFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQL 411

Query: 349 IGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDG 408
                 +V++I   ++A  +E  RL+ +++H L +  ++ IPM++FW +PQ+ L+G  + 
Sbjct: 412 QRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYN--EETIPMTIFWQVPQYFLVGCAEV 469

Query: 409 VCEVSIACFFIDQFPPLL 426
              +    FF DQ P  +
Sbjct: 470 FTFIGQLEFFYDQAPDAM 487

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 212/446 (47%), Gaps = 29/446 (6%)

Query: 8   AAYAMWV-MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLL--- 63
           A Y M   ++ YL +        AA  V  + GT  + PL   ++ D  +G YW +    
Sbjct: 44  AYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFV 103

Query: 64  ------VSSLAYSAVSYEYKP-ECIGE------GQKILFYTALGLIAFGMSGHLVSIGGF 110
                 ++ L  SA     KP  C  +       Q  +F+ AL +IA G  G    +  F
Sbjct: 104 FIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSF 163

Query: 111 MADQMTDSRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVV 168
            ADQ  ++   +   +S+    F+FS     L+    L+       W   FG+P +  V+
Sbjct: 164 GADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVI 223

Query: 169 ATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYE----RDNVDEI 224
           A   F  G+  YR ++P GSPLT +F+V VA+  K+  ++P + S L+E      N+   
Sbjct: 224 AVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGS 283

Query: 225 YVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPG 284
             + HT +L+  DKAA+     +++  E N WRLC VT++EE K ++ ++P+  T I+  
Sbjct: 284 RKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFA 343

Query: 285 VVSSIGFTYFLEQADHLNRKVGK-LSVPLPILLLFYDIARTQFTNLYAKFLNSFGES--- 340
            V S   T F+ Q + +++ +GK   +P   L LF  ++   +T +Y +F+         
Sbjct: 344 TVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTR 403

Query: 341 QSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQF 400
             + +         +V++I   ITA  +E  RLD +++H   D+   +I MS+FW +PQ+
Sbjct: 404 NERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQK--QIHMSIFWQIPQY 461

Query: 401 LLLGGFDGVCEVSIACFFIDQFPPLL 426
           LL+G  +    +    FF DQ P  +
Sbjct: 462 LLIGCAEVFTFIGQLEFFYDQAPDAM 487

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 212/436 (48%), Gaps = 41/436 (9%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++ YLT +    L  A   VN++ G   ++PL   ++ D  +G Y  +LV++  Y     
Sbjct: 66  LVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVLVATTIYLMGLV 125

Query: 70  --------SAVSYEYKPECIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR 119
                     +   ++  C+   +  ++ F+ A+ LI+ G  GH  S+  F ADQ  D  
Sbjct: 126 LLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLESFGADQFDDDH 185

Query: 120 AEQVSMRSAKLFFFSFCGVVLVP--IIALIAFPYIKP---WKIRFGIPAIFTVVATLVFL 174
            E+   R  K+ FF++  V L    + A+ A  YI+    W +   I  +   ++ ++F 
Sbjct: 186 VEE---RKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFF 242

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVD--EIYVVQHTRS 232
            G   YR R P GSPLT + +VFVA+  K     P + S L+E    +     ++ HT  
Sbjct: 243 IGKPFYRYRTPSGSPLTPILQVFVAAIAKRNLPYPSDPSLLHEVSKTEFTSGRLLCHTEH 302

Query: 233 LRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFT 292
           L+ LDKAAII     L  ++ + WRL  +T++EETK ++ +IPI  + +  G+ ++   T
Sbjct: 303 LKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQAST 362

Query: 293 YFLEQADHLNRKVGKLSVP----LPILLLFYDIARTQFTNLYAKFLNSFGESQSK-KYAP 347
           +F++QA  ++R +G  +VP      +  L   I+ T +  L    L S   +Q       
Sbjct: 363 FFIKQAITMDRHIGGFTVPPASMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQ 422

Query: 348 AIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFD 407
            IG  T M+ +++  I AA VE +RL         D+ ++  PMS+ WL PQF+++G  D
Sbjct: 423 RIG--TGMIFSLITMIIAALVEKQRL---------DRTNNNKPMSVIWLAPQFMVIGFAD 471

Query: 408 GVCEVSIACFFIDQFP 423
               V +  +F  Q P
Sbjct: 472 AFTLVGLQEYFYHQVP 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 208/439 (47%), Gaps = 39/439 (8%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++ YLT +    L  A    N++ G   ++PL   ++ D  +G Y  +L+++  Y     
Sbjct: 65  LVVYLTTILHQDLKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLI 124

Query: 70  --------SAVSYEYKPECIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR 119
                     +   ++  C+   +  +I F+ A+ LI+ G  GH  S+  F ADQ  D  
Sbjct: 125 LLTLSWFIPGLKACHEDMCVEPRKAHEIAFFIAIYLISIGTGGHKPSLESFGADQFEDGH 184

Query: 120 AEQVSMRSAKLFFFSF-----CGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFL 174
            E+   R  K+ +F++     C  +L  +  ++       W +   I  I    +  +F 
Sbjct: 185 PEE---RKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFR 241

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVD--EIYVVQHTRS 232
            G   YR R P GSPLT + +VFVA+  K     P ++S L+E  N +  +  ++  +++
Sbjct: 242 IGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYTKGRLLSSSKN 301

Query: 233 LRCLDKAAIILP-DKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGF 291
           L+ LDKAA+I   ++  + ++ + WRL  VT++EE K L+ MIPI    +  GV ++   
Sbjct: 302 LKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSS 361

Query: 292 TYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQF--TNLYAKFL-----NSFGESQSKK 344
           T F++QA  ++R +   S  +P   LF  IA +      +Y K L      + G  +   
Sbjct: 362 TLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGIS 421

Query: 345 YAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLG 404
               IG    MV ++   I AA +E +RLD  + H +    +  + +S  WL PQFL+LG
Sbjct: 422 ILQRIGVG--MVFSLFAMIIAALIEKKRLDYAKEHHM----NKTMTLSAIWLAPQFLVLG 475

Query: 405 GFDGVCEVSIACFFIDQFP 423
             D    V +  +F DQ P
Sbjct: 476 VADAFTLVGLQEYFYDQVP 494

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 216/446 (48%), Gaps = 33/446 (7%)

Query: 4   ADIFAAYAMWV-MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWML 62
           A+ FA Y +   +I+YLT     S   AAA VN + G   +LPL   ++ D  +G Y  +
Sbjct: 45  AERFANYGIGSNLISYLTGPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITI 104

Query: 63  LVSSLAY---------SAVSYEYKPECIGEGQKIL---FYTALGLIAFGMSGHLVSIGGF 110
           +++S  Y         SA       E        L   F+ +L L+A G SGH   +  F
Sbjct: 105 IIASFIYVLGLAFLTLSAFLIPNNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAF 164

Query: 111 MADQMTDSRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVV 168
            ADQ  +   ++ S RS+    ++ S C  + + I+ ++       W + FGIP +F V+
Sbjct: 165 GADQFDEKNPQENSDRSSFFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVI 224

Query: 169 ATLVFLSGTCSYR----RRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEI 224
           + ++F+ G  SYR    R++   +P T + RVF  +    F     N+S+L + + ++  
Sbjct: 225 SLVLFVLGRKSYRFSKTRQEEETNPFTRIGRVFFVA----FKNQRLNSSDLCKVELIEAN 280

Query: 225 YVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPG 284
              +    L  L+KA +++P+ + E +       C+  ++E+   L+R+IP+ LT +   
Sbjct: 281 RSQESPEELSFLNKA-LLVPNDSDEGEVA-----CKSRDVEDATALVRLIPVWLTTLAYA 334

Query: 285 VVSSIGFTYFLEQADHLNRKV-GKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSK 343
           +  +   T+F +Q   + R +   + +P   L +   I+   F  +Y + L   G S +K
Sbjct: 335 IPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITK 394

Query: 344 KYAPAIGF---ATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQF 400
                       T MVLA L  + AA VE++RL+  + +GLID+P   +PMS++WL PQ+
Sbjct: 395 DPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQY 454

Query: 401 LLLGGFDGVCEVSIACFFIDQFPPLL 426
           +LLG  D    V +  FF  Q P  L
Sbjct: 455 MLLGLADVHTLVGMQEFFYSQVPTEL 480

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  155 bits (391), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 208/453 (45%), Gaps = 59/453 (13%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           MI+YLT    + L +AA  +  F GT  + PL   ++ D+  G +W +  +S+ Y     
Sbjct: 51  MISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMT 110

Query: 70  ----SAVSYEYKPE-CIGE--------GQKILFYTALGLIAFGMSGHLVSIGGFMADQMT 116
               SA+    +P  C GE         Q  + Y AL L A G  G    +  F ADQ  
Sbjct: 111 LLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFD 170

Query: 117 DSRAEQVSMRSAKLFFFSFC--GVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFL 174
           +S   Q +       ++ FC    VL+ +  L+       W +  GIP +   ++ + F+
Sbjct: 171 ESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFV 230

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVV----QHT 230
            G   YR   P GSP T + +V VA+  K   R+  + S LY  D +D    +     HT
Sbjct: 231 GGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHT 290

Query: 231 RSLRCLDKAAIILPDKTLE-QQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSI 289
           + +  LDKAAI+  +  L+  Q  N WRL  V  +EE K ++RM PI  + I+     + 
Sbjct: 291 KHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQ 350

Query: 290 GFTYFLEQADHLNRKV--------GKLSVPLPILLL----FYD-----IARTQFTNLYA- 331
             T+ L+QA  +NR +        G +SV   + +L    FYD     +AR +FT L   
Sbjct: 351 QGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVAR-KFTGLERG 409

Query: 332 -KFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIP 390
             FL+  G          IGF    V++I+  + A  VE +R  V   HGL+DKP   +P
Sbjct: 410 ITFLHRMG----------IGF----VISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVP 455

Query: 391 MSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
           +S  WL+PQ+ L G  +    +    FF DQ P
Sbjct: 456 ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAP 488

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 198/439 (45%), Gaps = 40/439 (9%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           +ITY T+    S V AA+ V  + GT  + PL    + D+  G YW +   S  Y     
Sbjct: 80  LITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMA 139

Query: 70  ----SAVSYEYKPECIGEG-----------QKILFYTALGLIAFGMSGHLVSIGGFMADQ 114
               SA     KP                 Q  +F+T L LIA G  G    +  F ADQ
Sbjct: 140 LLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQ 199

Query: 115 MTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKP---WKIRFGIPAIFTVVATL 171
             D+   +  +R A  F + +  + +   I+     +++    W + F IP +F  V+  
Sbjct: 200 FDDTDPRE-RVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIA 258

Query: 172 VFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYV----V 227
            F  GT  YR +KP GSP+T V +V VA+  KL   +P + S LYE    + +      +
Sbjct: 259 SFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKI 318

Query: 228 QHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVS 287
           QHT   + LDKAA+I   ++      N W+LC VT++EE K L+RM PI  + I+  V+ 
Sbjct: 319 QHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLY 378

Query: 288 SIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQS---KK 344
           S   T F++Q   +NR +    +P     +F  +       +Y +FL  F    +   K 
Sbjct: 379 SQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKG 438

Query: 345 YAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLG 404
                     + L++L    AA VET RL + +         D + MS+FW +PQ++L+G
Sbjct: 439 LTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQ---------DFVAMSIFWQIPQYILMG 489

Query: 405 GFDGVCEVSIACFFIDQFP 423
             +    +    FF D+ P
Sbjct: 490 IAEVFFFIGRVEFFYDESP 508

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
297827361	521	proton-dependent oligopeptide transport	0.978	0.802	0.447	3e-90
15224443	521	proton-dependent oligopeptide transport-	0.978	0.802	0.442	6e-88
449463497	586	PREDICTED: peptide transporter PTR2-like	0.953	0.694	0.330	4e-47
302759054	575	hypothetical protein SELMODRAFT_165561 [	0.948	0.704	0.324	9e-47
168043497	593	predicted protein [Physcomitrella patens	0.957	0.689	0.300	3e-46
116788004	594	unknown [Picea sitchensis]	0.939	0.675	0.328	8e-46
356512257	584	PREDICTED: peptide transporter PTR2-like	0.955	0.698	0.310	9e-46
116789064	604	unknown [Picea sitchensis]	0.929	0.657	0.306	1e-45
149900503	583	peptide transporter [Hakea actites]	0.948	0.694	0.319	2e-45
356525018	584	PREDICTED: peptide transporter PTR2-like	0.955	0.698	0.310	2e-45

>gi|297827361|ref|XP_002881563.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297327402|gb|EFH57822.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 274/436 (62%), Gaps = 18/436 (4%)

Query: 1   LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW 60
           L WA   A + +W+++ YLTN  K+    AAAIVN F G   +  L++Q+LVD  IG++W
Sbjct: 4   LSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLSMQFLVDAFIGHFW 63

Query: 61  MLLVSSLAYSA----VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMT 116
           ML +S+LA+S     ++    P   G GQK LFY AL +I+ G+ G  +S+G F  DQ+ 
Sbjct: 64  MLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLE 123

Query: 117 DSRAEQVSMRSAKL--FFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFL 174
           + R +      AKL  F     G ++  ++A IA P I PW +RF IP+   V+A ++FL
Sbjct: 124 EGRNKG---NPAKLVSFVIGNVGNLVFLLLAAIAMPQISPWFVRFAIPSGCEVLAMMIFL 180

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLR 234
           SGTCSYRR KP GSPLT +FRVFVASA K+    P N+S+LYE+   D+  +  HT SLR
Sbjct: 181 SGTCSYRRVKPGGSPLTAIFRVFVASASKMSCAYPNNSSQLYEKAECDQ-DIKPHTSSLR 239

Query: 235 CLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYF 294
           CLD+AA+IL  + LEQQ  NRW+LCRVTE+E+TK ++R +P+  T +I G+V S+G T+F
Sbjct: 240 CLDRAAMILQTEPLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFF 299

Query: 295 LEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNL----YAKFLNSFGESQSKKYAPAIG 350
           LEQA+H++ K G  ++PLP+LLLF + AR     L      +      ES  +   P  G
Sbjct: 300 LEQANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDLPESPKQTKTP-YG 358

Query: 351 FATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVC 410
              S++L+I CC  AA VE+RRL V+R+ GL+    + +PMS+FWLLPQ++LLG   G+ 
Sbjct: 359 IPVSIILSIFCCSIAAHVESRRLKVVRTQGLL---YETVPMSVFWLLPQYILLGSITGIY 415

Query: 411 EVSIACFFIDQFPPLL 426
           E S A +  +  P  L
Sbjct: 416 ENSFALYLEETVPEEL 431

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224443|ref|NP_181345.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana] gi|75223187|sp|O80436.1|PTR29_ARATH RecName: Full=Putative peptide/nitrate transporter At2g38100 gi|3335358|gb|AAC27159.1| putative peptide/amino acid transporter [Arabidopsis thaliana] gi|330254395|gb|AEC09489.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana]

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 271/436 (62%), Gaps = 18/436 (4%)

Query: 1   LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW 60
           L WA   A + +W+++ YLTN  K+    AAAIVN F G   +  L +Q+LVD  IG++W
Sbjct: 4   LSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIGHFW 63

Query: 61  MLLVSSLAYSA----VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMT 116
           ML +S+LA+S     ++    P   G GQK LFY AL +I+ G+ G  +S+G F  DQ+ 
Sbjct: 64  MLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLE 123

Query: 117 DSRAEQVSMRSAKL--FFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFL 174
           D R +      AKL  F     G  +  ++A IA P I PW +RF IP+   V+A L+F+
Sbjct: 124 DGRNKG---NPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAMLIFI 180

Query: 175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLR 234
           SG CSY+R KP GSPLTTVFRVF+ASA K+      N+S+LYE+   D+  +  HT SLR
Sbjct: 181 SGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQ-DIKPHTSSLR 239

Query: 235 CLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYF 294
            LD+AA+IL  ++LEQQ  NRW+LCRVTE+E+TK ++R +P+  T +I G+V S+G T+F
Sbjct: 240 YLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFF 299

Query: 295 LEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNL----YAKFLNSFGESQSKKYAPAIG 350
           LEQA+H++ K G  ++PLP+LLLF + AR     L      +    F ES  +   P  G
Sbjct: 300 LEQANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDFPESPKQTKTP-YG 358

Query: 351 FATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVC 410
              S++L+I CC  AA VE+RRL V+ + GL+    + +PMS+FWLLPQ++LLG   G+ 
Sbjct: 359 IPVSIILSIFCCSIAAHVESRRLKVVSTQGLL---HETVPMSVFWLLPQYILLGSITGIY 415

Query: 411 EVSIACFFIDQFPPLL 426
           E S A +  +  P  L
Sbjct: 416 ENSFALYLEETVPEEL 431

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463497|ref|XP_004149470.1| PREDICTED: peptide transporter PTR2-like [Cucumis sativus] gi|449526938|ref|XP_004170470.1| PREDICTED: peptide transporter PTR2-like [Cucumis sativus]

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 214/436 (49%), Gaps = 29/436 (6%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++TYLTN      V AA  V  + GT  + PL    L D   G YW +   S  Y     
Sbjct: 69  LVTYLTNKLHQGNVSAARNVTTWQGTCYLTPLIGAILADAYWGRYWTIAAFSTIYFIGMC 128

Query: 70  ----SAVSYEYKP-ECIG-------EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTD 117
               SA     KP EC+G         Q ++F+  L LIA G  G    +  F ADQ  D
Sbjct: 129 TLTLSASVPALKPAECVGFMCPPASAAQYMVFFLGLYLIALGTGGIKPCVSSFGADQFDD 188

Query: 118 SR-AEQVSMRSA-KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLS 175
           +  AE+V   S    F+FS     L+    L+       W + FGIPA+F  +A + F S
Sbjct: 189 TDPAERVKKGSFFNWFYFSINIGALISSSFLVWIQDNAGWGLGFGIPAVFMGLAIVSFFS 248

Query: 176 GTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDN----VDEIYVVQHTR 231
           GT  YR +KP GSP+T + +V VAS  K    +P +++ LYE  +    ++    ++H+ 
Sbjct: 249 GTKLYRFQKPGGSPITRMCQVLVASFHKRNLTVPSDSNLLYEVQDKSSAIEGSRKLEHSD 308

Query: 232 SLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGF 291
            LRCLDKAA+I   +       + WRLC VT+IEE K L+RM PI  T I+   V +   
Sbjct: 309 ELRCLDKAAVISDAELKSGDFSDPWRLCTVTQIEEFKILIRMFPIWATGIVFAAVYAQMS 368

Query: 292 TYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQF-TNLYAKFLNSFGE---SQSKKYAP 347
           T F+EQ   L++ +G   +P P  L  +D+    F   +Y +F+    +    + + +  
Sbjct: 369 TLFVEQGTMLDKTIGSFRIP-PASLSTFDVVSVIFWVPVYDRFIVPIAKKFTGKERGFTE 427

Query: 348 AIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFD 407
                  + +++LC   AA VE +RL++ R   L+ KP + +P+S+ W +PQ+ LLG  +
Sbjct: 428 IQRMGIGLFISVLCMSAAAVVEIKRLELARELDLVHKP-EAVPLSILWQIPQYFLLGAAE 486

Query: 408 GVCEVSIACFFIDQFP 423
               +    FF DQ P
Sbjct: 487 VFTFIGQLEFFYDQSP 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302759054|ref|XP_002962950.1| hypothetical protein SELMODRAFT_165561 [Selaginella moellendorffii] gi|300169811|gb|EFJ36413.1| hypothetical protein SELMODRAFT_165561 [Selaginella moellendorffii]

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 213/437 (48%), Gaps = 32/437 (7%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW---------MLLVS 65
           ++ YLTNV   S   AA+ VN + GT  +  L   ++ D+ +G YW         +L + 
Sbjct: 56  LVRYLTNVLHQSNATAASNVNLWTGTSSITALIGGFISDSYLGRYWTTTLFLFVYLLGMI 115

Query: 66  SLAYSAVSYEYKPECIGEG---------QKILFYTALGLIAFGMSGHLVSIGGFMADQMT 116
            L  SA     KP     G         Q  +F+ A+ L A     +        ADQ  
Sbjct: 116 LLTLSAALPSLKPPSCDTGVDCQPASPAQTGVFFFAVYLGALASGAYQPCNSSLGADQFD 175

Query: 117 DSRAEQVSMRSAKLFFF---SFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVF 173
           +   +++   +A   +F      G +L   + L     +  W   FGI  I   +A +VF
Sbjct: 176 EENPDELPKMTAYFNWFYQSMTVGALLASTLVLYTQENVS-WSFGFGICTIAMGLAVVVF 234

Query: 174 LSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYE----RDNVDEIYVVQH 229
           L GT  YR   P G+PL  VF+V VA+  K+  + P +AS LYE    + ++     +QH
Sbjct: 235 LIGTPLYRNHGPGGNPLVRVFQVLVATVRKMGLKNPNDASLLYEVADDKPSIKGSRKIQH 294

Query: 230 TRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSI 289
           T +L+ LDKAAIILP    + +E N WRLC V+++EE K ++RM+PI L+ I+  +V S 
Sbjct: 295 TTNLQFLDKAAIILPS---DLEEVNPWRLCTVSQVEEVKCIIRMLPILLSSIVYSIVYSQ 351

Query: 290 GFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGE---SQSKKYA 346
             T FLEQ   ++  +G+  +P   L +F +++    T  Y  FL           K   
Sbjct: 352 MATLFLEQGGTMDTHLGRYKIPPGSLSVFENLSILVCTPTYEWFLVPLLRRFTKHPKGLT 411

Query: 347 PAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGF 406
                 T +V+ +L  + AA VE RRL V R HG +D P   +PMS+FWL+PQ+ L+G  
Sbjct: 412 DLQRIGTGLVVIMLSMVVAALVEIRRLGVARDHGQLDSPAAVLPMSVFWLVPQYFLVGAS 471

Query: 407 DGVCEVSIACFFIDQFP 423
           +    + +  FF DQ P
Sbjct: 472 EVFTFIGLIEFFYDQSP 488

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168043497|ref|XP_001774221.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674489|gb|EDQ60997.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 222/443 (50%), Gaps = 34/443 (7%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++TYLT+V   S   AA  V+ + G   + PL   +L D   G YW  +V  L Y     
Sbjct: 68  LVTYLTSVMHQSNSAAATNVSNWNGAGYVTPLIGAFLADGYWGRYWAAVVCCLIYIIGMI 127

Query: 70  ----SAVSYEYKPE-CIGE---------GQKILFYTALGLIAFGMSGHLVSIGGFMADQM 115
               SA     +P+ C  E         GQ    + AL +I  G  G   ++  F ADQ 
Sbjct: 128 FLTFSASLRSLRPQQCSTEDVLCTHSSLGQAAFLFFALYVIDVGAGGVQATVTSFGADQF 187

Query: 116 TDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLV 172
            +  +++ + +++  F + +   +L  ++A   F YI+    W + FG   I  ++ T+ 
Sbjct: 188 DEEDSKEKTQKTS-FFNWFYQSTILGGLLAATFFVYIQDNVSWGLGFGASLIAVIIGTIS 246

Query: 173 FLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYV-----V 227
           F++GT  YR   P G+PLT + +V VASA K  ++IP   SELYE   V    +     +
Sbjct: 247 FIAGTPFYRHHPPGGNPLTRIGQVIVASARKWHHKIPV-GSELYEVREVTNSVIQGGRKI 305

Query: 228 QHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVS 287
           +HT+  R LDKAA+ +    + +   + WRLC +T++EE K +LRMIPI +T  +   V 
Sbjct: 306 RHTKEFRFLDKAAVEMQGDRINESHVDPWRLCTITQVEEVKVVLRMIPIMITSAMFSTVY 365

Query: 288 SIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYA----KFLNSFGESQSK 343
           +  +T F+ Q   ++ ++G   +P   L +F  ++ T +  +Y     +F++ F ++  +
Sbjct: 366 NQLYTLFIIQGSSMDLRMGNFKIPPASLSVFELLSVTVWVQVYDFVLIRFVSKFTKN-PR 424

Query: 344 KYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLL 403
            +         + ++I   I AA +E  RL V R HGL+D P+  +P+S+FW +PQF L+
Sbjct: 425 GFTELQRIGIGLFISIFGMIAAALLEIERLKVARHHGLLDNPEVPVPLSVFWQVPQFSLV 484

Query: 404 GGFDGVCEVSIACFFIDQFPPLL 426
           G  +    + I  FF  + P  +
Sbjct: 485 GASEVFGYIGIFEFFYGESPDAM 507

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116788004|gb|ABK24723.1| unknown [Picea sitchensis]

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 204/444 (45%), Gaps = 43/444 (9%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++TYLT         AA  V  + GT  + PL    L D   G YW +   S  Y     
Sbjct: 77  LVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIYFIGMA 136

Query: 70  -----SAVSYEYKPECIGE-------GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTD 117
                ++VS    P CIG         Q  +F+  L LIA G  G    +  F ADQ  D
Sbjct: 137 TLTLSASVSSLKPPSCIGSDCPTANLAQYGVFFLGLYLIALGTGGIKPCVSSFGADQFDD 196

Query: 118 SRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLS 175
           +  ++   + +    F+FS     LV    L+       W   FGIP +F  +A   F S
Sbjct: 197 TDPKEKKKKGSFFNWFYFSINVGALVSSSVLVWVQDNVGWGWGFGIPTLFMGLAIGSFFS 256

Query: 176 GTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYE-RDNVDEIY---VVQHTR 231
           GT  YR +KP GSP+T + +V VAS  KL   +P + S LYE +D    I     ++HT 
Sbjct: 257 GTPLYRLQKPGGSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQDRNSAIQGSRKLEHTD 316

Query: 232 SLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGF 291
             +CLDK+AII  D   +    N WRLC VT++EE K LLRM PI  T I+   V S   
Sbjct: 317 EFKCLDKSAIITDDDVRKGGFSNPWRLCTVTQVEEMKILLRMFPIWATGIVFAAVYSQIS 376

Query: 292 TYFLEQADHLNRKVG-KLSVPLPILLLF-----------YDIARTQFTNLYAKFLNSFGE 339
           T F+EQ   L+  +G +  +P   L +F           YD       + Y K    F E
Sbjct: 377 TMFVEQGMTLDTSIGSRFHIPPASLSVFDVVSVMIWVPVYDRVIVPIVSKYTKRERGFTE 436

Query: 340 SQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQ 399
            Q             + ++IL  + AA VE RRL++++++ L+      +PMS+FW +PQ
Sbjct: 437 LQR--------MGIGLFISILAMVAAALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQ 488

Query: 400 FLLLGGFDGVCEVSIACFFIDQFP 423
           + L+G  +    V    FF DQ P
Sbjct: 489 YFLVGASEVFTFVGQLEFFYDQSP 512

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512257|ref|XP_003524837.1| PREDICTED: peptide transporter PTR2-like [Glycine max]

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 207/435 (47%), Gaps = 27/435 (6%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++TYLT       V AA  V  + GT  + PL    L D   G YW + + S  Y     
Sbjct: 69  LVTYLTQKLHEGNVSAARNVTTWQGTCYLAPLIGAVLADAYWGRYWTIAIFSTIYFIGMG 128

Query: 70  ----SAVSYEYKP-ECIGEG-------QKILFYTALGLIAFGMSGHLVSIGGFMADQMTD 117
               SA     KP EC+G         Q  +F+  L LIA G  G    +  F ADQ  D
Sbjct: 129 TLTLSASVPALKPAECLGPACPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDD 188

Query: 118 SRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLS 175
           +   +   + +    F+FS     LV    ++       W + FGIPA+F  +A   F  
Sbjct: 189 TDPGERIKKGSFFNWFYFSINIGALVSSTFIVWIQENAGWGLGFGIPALFMALAIGSFFL 248

Query: 176 GTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDN----VDEIYVVQHTR 231
           GT  YR +KP GSP+T + +V VAS  K    +P ++S LYE  +    ++    ++H+ 
Sbjct: 249 GTPLYRFQKPGGSPITRMCQVVVASVRKRNLVVPEDSSLLYETPDKSSAIEGSRKLEHSD 308

Query: 232 SLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGF 291
            L+CLD+AA+    ++      N+WRLC VT++EE K L+RM P+  T I+   V +   
Sbjct: 309 ELKCLDRAAVASAAESKSGDYSNKWRLCTVTQVEELKILIRMFPVWATVIVFAAVYAQMS 368

Query: 292 TYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGE---SQSKKYAPA 348
           T F+EQ   +N  VG   +P   L  F  I+   +  +Y + +           + ++  
Sbjct: 369 TLFVEQGTMMNTNVGSFKIPPASLSSFDVISVIVWVPVYDRIIVPIARKFTGNERGFSEL 428

Query: 349 IGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDG 408
                 + +++LC   AA VE  RL + + HGL+D+P   +P+++FW +PQ+ LLG  + 
Sbjct: 429 QRMGIGLFISVLCMSAAAIVEIVRLQLAKEHGLVDEP-VPVPLNIFWQIPQYFLLGAAEV 487

Query: 409 VCEVSIACFFIDQFP 423
              +    FF DQ P
Sbjct: 488 FTFIGQLEFFYDQSP 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789064|gb|ABK25104.1| unknown [Picea sitchensis]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 217/450 (48%), Gaps = 53/450 (11%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSY 74
           ++TYLTN+   + V A   VN + GT  MLPL   ++ D+ +G Y  +L+SS+ Y     
Sbjct: 75  LVTYLTNIMHQTTVTAVKNVNVWAGTASMLPLFGAFVADSYLGRYRTILISSIVYLLGLS 134

Query: 75  E---------YKP--------ECI-GEGQKI-LFYTALGLIAFGMSGHLVSIGGFMADQM 115
                     ++P         C+   G ++  F+ +L L+A G  GH   +  F ADQ 
Sbjct: 135 LLTLSASLSSFRPPPCDITSYTCLKASGSQVGFFFFSLYLVALGQGGHKPCLQAFGADQF 194

Query: 116 TDSRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVF 173
            +   E+   RS+    ++F  C  ++V I  L+       W + FGIP +   +A  VF
Sbjct: 195 DERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQENVGWGLGFGIPTMAMAIALTVF 254

Query: 174 LSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTR-- 231
           L GT  YR + P  SPLT + +VFVA+ LK    +P    +         IYV+Q  +  
Sbjct: 255 LCGTRLYRHKLPGASPLTRIAQVFVATILKWNVPVPSQGEK--------NIYVIQEEQLL 306

Query: 232 ------------SLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLT 279
                        LR LDKA + + D   + ++ N WRLC VT++EE K +LR++PI + 
Sbjct: 307 KGEKSRELLPKNQLRFLDKATVAV-DLDYKHKDIN-WRLCTVTQVEEAKLVLRLLPIWVA 364

Query: 280 FIIPGVVSSIGFTYFLEQADHLNRKVGK-LSVPLPILLLFYDIARTQFTNLYAKFLNSFG 338
            ++ GVV +   T+F +Q   ++RK+G+   +P   L  F  ++      +Y +      
Sbjct: 365 CLMYGVVFAQSPTFFTKQGSTMDRKIGENFEIPAASLQSFISLSILVLVPVYDRIFVPVA 424

Query: 339 ESQSKKYA-----PAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSM 393
            S +K          IG    + ++IL    AA  E +RL V + +G  D P   IP+S+
Sbjct: 425 RSITKNERGITLLQRIGIG--IFISILSMTVAALTEMKRLQVAKDYGFEDMPHATIPLSI 482

Query: 394 FWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
           FWLLPQ++L G  D    + +  +F DQ P
Sbjct: 483 FWLLPQYILFGISDVFTMIGLQEYFYDQMP 512

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149900503|gb|ABR32183.1| peptide transporter [Hakea actites]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 215/438 (49%), Gaps = 33/438 (7%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++TYLT+        AA  V  + GT  + PL    L D+  G YW + V S+ Y     
Sbjct: 68  LVTYLTSKLHEGNASAARNVTTWSGTCYLAPLIGAVLADSYWGRYWTIAVFSIIYFIGMG 127

Query: 70  ----SAVSYEYKPE-CIGE-------GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTD 117
               SA    +KP  C+G         Q  +F+  L LIA G  G    +  F ADQ  D
Sbjct: 128 TLTLSASVAAFKPSPCVGSVCPAATPAQYAVFFCGLYLIALGTGGIKPCVSSFGADQFDD 187

Query: 118 SRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLS 175
           +   +   + +    F+FS     L+    L+       W + FGIP +F  VA + F S
Sbjct: 188 TDPVERVQKGSFFNWFYFSINIGALISSSFLVWIQDNAGWGLGFGIPTLFMGVAIISFFS 247

Query: 176 GTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDN----VDEIYVVQHTR 231
           GT  YR +KP GSPL  + +VFVAS  K    +P+++S L+E  +    ++    ++H+ 
Sbjct: 248 GTPLYRFQKPGGSPLMRMCQVFVASFRKWNLDVPQDSSLLFELPDKTSAIEGSRKLEHSD 307

Query: 232 SLRCLDKAAIILPDKTLEQQEG---NRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSS 288
            LRCLDKAA++     L+ Q+G   N WRLC VT++EE K L+RM PI  T I+   V +
Sbjct: 308 ELRCLDKAAVV---SDLDVQQGDLTNPWRLCTVTQVEELKILIRMFPIWATGIVFSAVYA 364

Query: 289 IGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGE---SQSKKY 345
              T F+EQ   L+  +G  ++P   L  F  ++   +  +Y + L         + + +
Sbjct: 365 QMSTMFVEQGMVLDTTIGSFTIPPASLSTFDVLSVIVWVPMYDRLLVPLARKFTGKERGF 424

Query: 346 APAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGG 405
           +        + ++IL    AA VE RRL + +S GL+D+ +  +PMS+ W +PQ+ L+G 
Sbjct: 425 SELQRMGIGLFISILSMTAAAIVEIRRLQIAKSLGLVDQ-NVAVPMSILWQIPQYFLVGA 483

Query: 406 FDGVCEVSIACFFIDQFP 423
            +    +    FF DQ P
Sbjct: 484 SEIFTFIGQLEFFYDQSP 501

Source: Hakea actites

Species: Hakea actites

Genus: Hakea

Family: Proteaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525018|ref|XP_003531124.1| PREDICTED: peptide transporter PTR2-like [Glycine max]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 208/435 (47%), Gaps = 27/435 (6%)

Query: 15  MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY----- 69
           ++TYLT       V AA  V  + GT  + PL    L D   G YW + + S  Y     
Sbjct: 69  LVTYLTQKLHEGNVSAARNVTTWQGTCYLAPLIGAVLADAYWGRYWTIAIFSTIYFIGMG 128

Query: 70  ----SAVSYEYKP-ECIGEG-------QKILFYTALGLIAFGMSGHLVSIGGFMADQMTD 117
               SA     KP EC+G         Q  +F+  L LIA G  G    +  F ADQ  D
Sbjct: 129 TLTLSASVPALKPAECLGTACPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDD 188

Query: 118 SRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLS 175
           +  ++   + +    F+FS     LV    ++       W + FGIPA+F  +A   F  
Sbjct: 189 TDPQERIKKGSFFNWFYFSINIGALVSSTFIVWIQENAGWGLGFGIPALFMALAIGSFFL 248

Query: 176 GTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDN----VDEIYVVQHTR 231
           GT  YR +KP GSP+T + +V VAS  K    +P +++ LYE  +    ++    + H+ 
Sbjct: 249 GTPLYRFQKPGGSPITRMCQVVVASVWKRNLVVPEDSNLLYETPDKSSAIEGSRKLGHSD 308

Query: 232 SLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGF 291
            L+CLD+AA++   ++      N+WRLC VT++EE K L+RM P+  T I+   V +   
Sbjct: 309 ELKCLDRAAVVSDAESKSGDYSNQWRLCTVTQVEELKILIRMFPVWATGIVFAAVYAQMS 368

Query: 292 TYFLEQADHLNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGE---SQSKKYAPA 348
           T F+EQ   +N   G   +P   L  F  I+   +  +Y + +         + + ++  
Sbjct: 369 TLFVEQGTMMNTNFGSFRIPPASLSSFDVISVIFWVPVYDRIIVPIARKFTGKERGFSEL 428

Query: 349 IGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDG 408
                 + +++LC   AA VE  RL V + HGL+D+P   +P+++FW +PQ+ LLG  + 
Sbjct: 429 QRMGIGLFISVLCMSAAAIVEIVRLKVAKEHGLVDEP-VPVPLNIFWQIPQYFLLGAAEV 487

Query: 409 VCEVSIACFFIDQFP 423
              V    FF DQ P
Sbjct: 488 FTFVGQLEFFYDQSP 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2042937	521	AT2G38100 [Arabidopsis thalian	0.971	0.796	0.434	4.9e-85
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.805	0.588	0.333	1.2e-45
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.925	0.711	0.312	1.2e-42
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.786	0.589	0.3	1.8e-39
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.789	0.565	0.298	9.2e-39
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.772	0.571	0.306	1.8e-38
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.798	0.598	0.304	5.5e-38
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.770	0.557	0.303	6.9e-38
TAIR|locus:4515102750	561	AT1G72125 [Arabidopsis thalian	0.960	0.730	0.279	3e-37
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.763	0.566	0.319	6.8e-37

TAIR|locus:2042937 AT2G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 188/433 (43%), Positives = 262/433 (60%)

Query:     1 LFWADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW 60
             L WA   A + +W+++ YLTN  K+    AAAIVN F G   +  L +Q+LVD  IG++W
Sbjct:     4 LSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIGHFW 63

Query:    61 MXXXXXXXXXXX----XXEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMT 116
             M                    P   G GQK LFY AL +I+ G+ G  +S+G F  DQ+ 
Sbjct:    64 MLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLE 123

Query:   117 DSRAEQVSMRSAKL--FFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFL 174
             D R +      AKL  F     G  +  ++A IA P I PW +RF IP+   V+A L+F+
Sbjct:   124 DGRNKG---NPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAMLIFI 180

Query:   175 SGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLR 234
             SG CSY+R KP GSPLTTVFRVF+ASA K+      N+S+LYE+   D+  +  HT SLR
Sbjct:   181 SGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQD-IKPHTSSLR 239

Query:   235 CLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYF 294
              LD+AA+IL  ++LEQQ  NRW+LCRVTE+E+TK ++R +P+  T +I G+V S+G T+F
Sbjct:   240 YLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFF 299

Query:   295 LEQADHLNRKVGKLSVPLPILLLFYDIART---QFTNLYAK-FLNSFGESQSKKYAPAIG 350
             LEQA+H++ K G  ++PLP+LLLF + AR    +   + AK     F ES  +   P  G
Sbjct:   300 LEQANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDFPESPKQTKTP-YG 358

Query:   351 FATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVC 410
                S++L+I CC  AA VE+RRL V+ + GL+    + +PMS+FWLLPQ++LLG   G+ 
Sbjct:   359 IPVSIILSIFCCSIAAHVESRRLKVVSTQGLLH---ETVPMSVFWLLPQYILLGSITGIY 415

Query:   411 EVSIACFFIDQFP 423
             E S A +  +  P
Sbjct:   416 ENSFALYLEETVP 428

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0015210 "uracil transmembrane transporter activity" evidence=ISS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 122/366 (33%), Positives = 181/366 (49%)

Query:    77 KP-ECIGE-------GQKILFYTALGLIAFGMSGHLVSIGGFMADQM--TDSRAEQVSMR 126
             KP ECIG+        Q  +F+  L LIA G  G    +  F ADQ   TDSR E+V   
Sbjct:   140 KPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSR-ERVRKA 198

Query:   127 SA-KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKP 185
             S    F+FS     LV    L+     + W + FGIP +F  +A   F  GT  YR +KP
Sbjct:   199 SFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKP 258

Query:   186 LGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYV----VQHTRSLRCLDKAAI 241
              GSP+T + +V VAS  K   ++P +A+ LYE  + +        ++HT   + LDKAA+
Sbjct:   259 GGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAV 318

Query:   242 ILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHL 301
             I  +++      N WRLC VT++EE K L+RM PI  + II   V +   T F++Q   +
Sbjct:   319 ISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAM 378

Query:   302 NRKVGKLSVPLPILLLFYDIARTQ-FTNLYAKFLNSFGESQS---KKYAPAIGFATSMVL 357
             N K+G   +P P  L  +D A    +  LY +F+       +   K +         + +
Sbjct:   379 NCKIGSFQLP-PAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFV 437

Query:   358 AILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACF 417
             ++LC   AA VE  RL +    GL++     +P+S+ W +PQ+ +LG  +    +    F
Sbjct:   438 SVLCMAAAAIVEIIRLHMANDLGLVES-GAPVPISVLWQIPQYFILGAAEVFYFIGQLEF 496

Query:   418 FIDQFP 423
             F DQ P
Sbjct:   497 FYDQSP 502

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 137/439 (31%), Positives = 217/439 (49%)

Query:    15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMXXXXXXXXXXXXX 74
             +IT+LTN    S   AA  +N + G   M P+   +L D+I+G +               
Sbjct:    40 LITFLTNELGQSTATAAKNINTWIGVSCMFPILGAFLADSILGRFKTVLLTSFIYLLGIV 99

Query:    75 EYKPECIGEGQKI---LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLF 131
                       +++   +F+ AL ++A G  GH   +  F ADQ  ++ AE+   ++AK  
Sbjct:   100 MLPLSVTVVARRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEE---KAAKTS 156

Query:   132 FFSF--CGVVLVPIIALIAFPYIKP---WKIRFGIPAIFTVVATLVFLSGTCSYRRRKPL 186
             FF++    +VL   IA++A  +I+    W + F I A   V+A ++FL G   YR++ P+
Sbjct:   157 FFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPV 216

Query:   187 GSPLTTVFRVFVASALKLFYRIPRNASEL-YERD--------NVDEIYVVQHTRSLRCLD 237
             GSP T V +V VA+  K      R+   L YE +        N +++Y++  T   R LD
Sbjct:   217 GSPFTRVAQVMVAALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLD 276

Query:   238 KAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFII-PGVVSSIGFTYFLE 296
             KA II  D+    +  N WRLC V ++EE K +LR+IPI ++ I+    ++ +  T+FL+
Sbjct:   277 KATII--DEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLN-TFFLK 333

Query:   297 QADHLNRKVGK-LSVP---------LPILLLF--YDIARTQFTNLYAKFLNSFGESQSKK 344
             Q   ++R +G   ++P         + IL+L   YD  R  F  +  K  N      S +
Sbjct:   334 QGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYD--RV-FVPMVRKITNHHSGITSLQ 390

Query:   345 YAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLG 404
                 +G   +    ++C +    VE +RL V R HGLID P + +PMS  WLLPQ++L+G
Sbjct:   391 RI-GVGLFVATFNMVICGL----VEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVG 445

Query:   405 GFDGVCEVSIACFFIDQFP 423
               D    V +   F DQ P
Sbjct:   446 IGDVFTIVGMQELFYDQMP 464

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 105/350 (30%), Positives = 180/350 (51%)

Query:    85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPII 144
             Q  +F+ AL +IA G  G    +  F ADQ  D   E   ++ +  F + +  + +  +I
Sbjct:   138 QTAVFFVALYMIALGTGGIKPCVSSFGADQF-DENDENEKIKKSSFFNWFYFSINVGALI 196

Query:   145 ALIAFPYIKP---WKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASA 201
             A     +I+    W   FG+P +  V+A   F  G+  YR ++P GSPLT +F+V VA+ 
Sbjct:   197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256

Query:   202 LKLFYRIPRNASELYE----RDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWR 257
              K+  ++P + S L+E      N+     + HT +L+  DKAA+     +++  E N WR
Sbjct:   257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWR 316

Query:   258 LCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGK-LSVPLPILL 316
             LC VT++EE K ++ ++P+  T I+   V S   T F+ Q + +++ +GK   +P   L 
Sbjct:   317 LCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLS 376

Query:   317 LFYDIARTQFTNLYAKFLNSFGESQSKK---YAPAIGFATSMVLAILCCITAAKVETRRL 373
             LF  ++   +T +Y +F+       ++    +         +V++I   ITA  +E  RL
Sbjct:   377 LFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRL 436

Query:   374 DVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
             D +++H   D+   +I MS+FW +PQ+LL+G  +    +    FF DQ P
Sbjct:   437 DYVKTHNAYDQK--QIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAP 484

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
 Identities = 105/352 (29%), Positives = 165/352 (46%)

Query:    85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFC--GVVLVP 142
             Q  + Y AL L A G  G    +  F ADQ  +S   Q +       ++ FC    VL+ 
Sbjct:   139 QLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLA 198

Query:   143 IIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASAL 202
             +  L+       W +  GIP +   ++ + F+ G   YR   P GSP T + +V VA+  
Sbjct:   199 VTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFR 258

Query:   203 KLFYRIPRNASELYERDNVDE-IYV---VQHTRSLRCLDKAAIILPDKTLEQ-QEGNRWR 257
             K   R+  + S LY  D +D  I +   + HT+ +  LDKAAI+  +  L+  Q  N WR
Sbjct:   259 KRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWR 318

Query:   258 LCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKV-GKLSVPLPILL 316
             L  V  +EE K ++RM PI  + I+     +   T+ L+QA  +NR +     +P   + 
Sbjct:   319 LSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMS 378

Query:   317 LFYDIARTQ----FTNLYAKFLNSF-GESQSKKYAPAIGFATSMVLAILCCITAAKVETR 371
             +F  +A       +  ++ K    F G  +   +   +G     V++I+  + A  VE +
Sbjct:   379 VFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIG--FVISIIATLVAGFVEVK 436

Query:   372 RLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
             R  V   HGL+DKP   +P+S  WL+PQ+ L G  +    +    FF DQ P
Sbjct:   437 RKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAP 488

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
 Identities = 107/349 (30%), Positives = 170/349 (48%)

Query:    85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSA---KLFFFSFCGVVL- 140
             Q  + Y +L LIA G  G   SI GF +DQ  D   ++ +  +    + FFF   G +L 
Sbjct:   140 QMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLA 199

Query:   141 VPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVAS 200
             V ++  +     + W   +GI  +   +A ++FL GT  YR +K  GSP+  +F+V  A+
Sbjct:   200 VTVLVYMQDEVGRSWA--YGICTVSMAIAIVIFLCGTKRYRYKKSQGSPVVQIFQVIAAA 257

Query:   201 ALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEG----NRW 256
               K    +P++   LYE DN + I + +HT     LDKAAI+      +  +G    N W
Sbjct:   258 FRKRKMELPQSIVYLYE-DNPEGIRI-EHTDQFHLLDKAAIVAEGDFEQTLDGVAIPNPW 315

Query:   257 RLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILL 316
             +L  VT++EE K ++R++PI  T II     +   T+ +EQA  + R +G   +P   L 
Sbjct:   316 KLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNIGSFKIPAGSLT 375

Query:   317 LFYDIARTQFTNLYAKFLNSFGESQSKK--YAPAIGFATSMVLAILCCITAAKVETRRLD 374
             +F+  A      +Y + +  F +    K  ++     A  +VL+      AA VE +RL 
Sbjct:   376 VFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGMAAAALVEQKRLS 435

Query:   375 VIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
             V +S          +P+S+F L+PQF L+G  +         FFI Q P
Sbjct:   436 VAKSSS-----QKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSP 479

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 111/365 (30%), Positives = 185/365 (50%)

Query:    78 PECIGE------GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLF 131
             P C GE      GQ  + + AL LIA G  G    +  F ADQ  D+  ++   +S+  F
Sbjct:   125 PTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSS--F 182

Query:   132 FFSFCGVVLV-PIIALIAFPYIKP---WKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLG 187
             F  F  V+ V  +IA     +I+    W    G+P +   +A + F +G+  YR +KP G
Sbjct:   183 FNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGG 242

Query:   188 SPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYV----VQHTRSLRCLDKAAIIL 243
             SPLT + +V VAS  K   +IP + S LYE  + +   +    ++HT+ L   DKAA+  
Sbjct:   243 SPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query:   244 PDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFII-PGVVSSIGFTYFLEQADHLN 302
                     + + W+LC VT++EE K L+R++PI  T I+   V S +G T F+ Q + L+
Sbjct:   303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMG-TVFVLQGNTLD 361

Query:   303 RKVG-KLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQS---KKYAPAIGFATSMVLA 358
             + +G    +P   L LF  ++   +  +Y K +  F    +   + +         +V++
Sbjct:   362 QHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVIS 421

Query:   359 ILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFF 418
             I   ++A  +E  RL+ +++H L +  ++ IPM++FW +PQ+ L+G  +    +    FF
Sbjct:   422 IFSMVSAGILEVARLNYVQTHNLYN--EETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFF 479

Query:   419 IDQFP 423
              DQ P
Sbjct:   480 YDQAP 484

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
 Identities = 106/349 (30%), Positives = 167/349 (47%)

Query:    85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPII 144
             Q  +F+T L LIA G  G    +  F ADQ  D+   +  +R A  F + +  + +   I
Sbjct:   170 QYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRE-RVRKASFFNWFYFSINIGSFI 228

Query:   145 ALIAFPYIKP---WKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASA 201
             +     +++    W + F IP +F  V+   F  GT  YR +KP GSP+T V +V VA+ 
Sbjct:   229 SSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAY 288

Query:   202 LKLFYRIPRNASELYERDNVDEIYV----VQHTRSLRCLDKAAIILPDKTLEQQEGNRWR 257
              KL   +P + S LYE    + +      +QHT   + LDKAA+I   ++      N W+
Sbjct:   289 RKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWK 348

Query:   258 LCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLL 317
             LC VT++EE K L+RM PI  + I+  V+ S   T F++Q   +NR +    +P     +
Sbjct:   349 LCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGV 408

Query:   318 FYDIARTQFTNLYAKFLNSFGESQS---KKYAPAIGFATSMVLAILCCITAAKVETRRLD 374
             F  +       +Y +FL  F    +   K           + L++L    AA VET RL 
Sbjct:   409 FDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQ 468

Query:   375 VIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
             + +         D + MS+FW +PQ++L+G  +    +    FF D+ P
Sbjct:   469 LAQ---------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 124/443 (27%), Positives = 209/443 (47%)

Query:     4 ADIFAAYAMWV-MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNY--- 59
             A+ FA Y +   +I+YLT     S   AAA VN + G   +LPL   ++ D  +G Y   
Sbjct:    45 AERFANYGIGSNLISYLTGPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITI 104

Query:    60 ------WMXXXXXXXXXXXXXEYKPECIGEGQKIL---FYTALGLIAFGMSGHLVSIGGF 110
                   ++                 E        L   F+ +L L+A G SGH   +  F
Sbjct:   105 IIASFIYVLGLAFLTLSAFLIPNNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAF 164

Query:   111 MADQMTDSRAEQVSMRSA--KLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVV 168
              ADQ  +   ++ S RS+    ++ S C  + + I+ ++       W + FGIP +F V+
Sbjct:   165 GADQFDEKNPQENSDRSSFFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVI 224

Query:   169 ATLVFLSGTCSYR----RRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEI 224
             + ++F+ G  SYR    R++   +P T + RVF  +    F     N+S+L + + ++  
Sbjct:   225 SLVLFVLGRKSYRFSKTRQEEETNPFTRIGRVFFVA----FKNQRLNSSDLCKVELIEAN 280

Query:   225 YVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPG 284
                +    L  L+KA +++P+   +  EG     C+  ++E+   L+R+IP+ LT +   
Sbjct:   281 RSQESPEELSFLNKA-LLVPN---DSDEGEV--ACKSRDVEDATALVRLIPVWLTTLAYA 334

Query:   285 VVSSIGFTYFLEQADHLNRKVGK-LSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSK 343
             +  +   T+F +Q   + R +   + +P   L +   I+   F  +Y + L   G S +K
Sbjct:   335 IPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITK 394

Query:   344 K---YAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQF 400
                         T MVLA L  + AA VE++RL+  + +GLID+P   +PMS++WL PQ+
Sbjct:   395 DPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQY 454

Query:   401 LLLGGFDGVCEVSIACFFIDQFP 423
             +LLG  D    V +  FF  Q P
Sbjct:   455 MLLGLADVHTLVGMQEFFYSQVP 477

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.8e-37, P = 6.8e-37
 Identities = 113/354 (31%), Positives = 182/354 (51%)

Query:    83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVP 142
             +  ++ F+ A+ LI+ G  GH  S+  F ADQ  D   E+   R  K+ FF++  V L  
Sbjct:   149 KAHEVAFFIAIYLISIGTGGHKPSLESFGADQFDDDHVEE---RKMKMSFFNWWNVSLCA 205

Query:   143 --IIALIAFPYIKPWKIRFGIPAIF-TVV---ATLVFLSGTCSYRRRKPLGSPLTTVFRV 196
               + A+ A  YI+  ++ +G+  I  TVV   + ++F  G   YR R P GSPLT + +V
Sbjct:   206 GILTAVTAVAYIED-RVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQV 264

Query:   197 FVASALKLFYRIPRNASELYERDNVDEIY--VVQHTRSLRCLDKAAIILPDKTLEQQEGN 254
             FVA+  K     P + S L+E    +     ++ HT  L+ LDKAAII     L  ++ +
Sbjct:   265 FVAAIAKRNLPYPSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQS 324

Query:   255 RWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVP--- 311
              WRL  +T++EETK ++ +IPI  + +  G+ ++   T+F++QA  ++R +G  +VP   
Sbjct:   325 PWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPAS 384

Query:   312 -LPILLLFYDIARTQFTNLYAKFLNSFGESQSK-KYAPAIGFATSMVLAILCCITAAKVE 369
                +  L   I+ T +  L    L S   +Q        IG  T M+ +++  I AA VE
Sbjct:   385 MFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIG--TGMIFSLITMIIAALVE 442

Query:   370 TRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFP 423
              +RLD         + ++  PMS+ WL PQF+++G  D    V +  +F  Q P
Sbjct:   443 KQRLD---------RTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVP 487

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80436	PTR29_ARATH	No assigned EC number	0.4426	0.9789	0.8023	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_4001571 annotation not avaliable (521 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
pfam00854	372	pfam00854, PTR2, POT family	1e-25
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-07

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  107 bits (268), Expect = 1e-25
 Identities = 86/378 (22%), Positives = 154/378 (40%), Gaps = 34/378 (8%)

Query: 60  WMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR 119
              ++ ++ +  ++    P  +   Q  LFY  L LIA G  G   ++  F ADQ  +++
Sbjct: 6   LGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQ 65

Query: 120 AEQVSMRSAKLFFFS-FCGVVLVPIIALIAFPYIKP---WKIRFGIPAIFTVVATLVFLS 175
             +        F+FS   G     +IA I  PY++    + + FG+PA+  ++A LVFL 
Sbjct: 66  DPRRD-GFFSWFYFSINAG----SLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLL 120

Query: 176 GTCSYRR-RKPLGSPLTTVFRVFVASALKLFY-RIPRNASELYE-RDNVDEIYVVQHTRS 232
           G+  Y++   P GSP T      + +A K    ++P+++  LY   +  ++  + Q   +
Sbjct: 121 GSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQ---T 177

Query: 233 LRCLDKAAIILPDKT---LEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSI 289
                 A I +P      L  Q+G+ W           + +L M+PI   +I+P  + + 
Sbjct: 178 KVHTRVAVIFIPLPKFWALFDQQGSVW---------LLQAILLMLPIWAFWILPDQMWTQ 228

Query: 290 GFTYFLEQADHLNRKVGKL-SVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPA 348
             T  + Q   ++R +  L  +P      F  +A      +    +      +     P 
Sbjct: 229 LATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRLKRGLTLPQ 288

Query: 349 IGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDG 408
             F   M + I+    AA VE +R     + GL       +P+ + W LP+  +     G
Sbjct: 289 -RFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPG-WTVPLFILWSLPELFI----SG 342

Query: 409 VCEVSIACFFIDQFPPLL 426
           V       F  D  P  +
Sbjct: 343 VGLAGALEFAPDALPSSM 360

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 23/271 (8%)

Query: 7   FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVS 65
           F+ Y M  +++ YL N    +   A  I + F     + PL    + D+ +G +  +L  
Sbjct: 1   FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60

Query: 66  SLAYSAV----SYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAE 121
           SL Y       S    P         L    L LIA G  G    +  F  DQ  + +  
Sbjct: 61  SLVYVVGHALASLGAVPSLGHPLHDALSLVGLALIALGTGGIKPCVSAFGGDQFEERQLS 120

Query: 122 QVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKP----------WKIRFGIPAIFTVVATL 171
                  + F F +  +    + + I  P ++           + + FG+P I   +A +
Sbjct: 121 LRF----RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALI 176

Query: 172 VFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTR 231
           VF  G+  Y+++ P+G+ ++ V +  V +  K F     +   L+  D     Y+++  R
Sbjct: 177 VFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLHWLDWAAPKYLIRMIR 236

Query: 232 SLRCLDKAAIILPD----KTLEQQEGNRWRL 258
           S + L +   +         L  Q+G+RW L
Sbjct: 237 STKRLLRVLFLFIPLPMFWALFDQQGSRWTL 267

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10054	395	putative transporter; Provisional	99.58
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.54
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.53
TIGR00900	365	2A0121 H+ Antiporter protein.	99.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.41
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.41
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
PRK03545	390	putative arabinose transporter; Provisional	99.4
PRK09528	420	lacY galactoside permease; Reviewed	99.39
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
TIGR00895	398	2A0115 benzoate transport.	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.35
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.35
TIGR00901	356	2A0125 AmpG-related permease.	99.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.33
PRK10504	471	putative transporter; Provisional	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.31
PRK12382	392	putative transporter; Provisional	99.29
PRK05122	399	major facilitator superfamily transporter; Provisi	99.29
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.29
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.28
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.27
PRK03699	394	putative transporter; Provisional	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.26
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.24
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.24
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.23
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.22
PRK10489	417	enterobactin exporter EntS; Provisional	99.22
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.2
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.2
PRK09848	448	glucuronide transporter; Provisional	99.19
PRK11043	401	putative transporter; Provisional	99.18
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.18
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.18
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
PRK15011	393	sugar efflux transporter B; Provisional	99.17
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.16
TIGR00898	505	2A0119 cation transport protein.	99.15
PRK03633	381	putative MFS family transporter protein; Provision	99.14
PRK10133	438	L-fucose transporter; Provisional	99.14
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.14
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.13
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.12
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.12
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.11
PRK03893	496	putative sialic acid transporter; Provisional	99.1
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.1
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.1
PRK09705	393	cynX putative cyanate transporter; Provisional	99.09
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.07
PLN00028	476	nitrate transmembrane transporter; Provisional	99.06
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.05
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.05
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.05
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.04
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.03
PRK11663	434	regulatory protein UhpC; Provisional	99.02
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.95
PRK09669	444	putative symporter YagG; Provisional	98.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.92
PRK10429	473	melibiose:sodium symporter; Provisional	98.91
PRK09952	438	shikimate transporter; Provisional	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.88
PRK10642	490	proline/glycine betaine transporter; Provisional	98.87
PRK15075	434	citrate-proton symporter; Provisional	98.85
PRK11902	402	ampG muropeptide transporter; Reviewed	98.82
KOG2532	466	consensus Permease of the major facilitator superf	98.78
PF13347	428	MFS_2: MFS/sugar transport protein	98.78
PRK11010	491	ampG muropeptide transporter; Validated	98.73
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.67
PRK05122	399	major facilitator superfamily transporter; Provisi	98.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.61
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.61
PRK03699	394	putative transporter; Provisional	98.6
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.58
PRK15011	393	sugar efflux transporter B; Provisional	98.55
PRK09705	393	cynX putative cyanate transporter; Provisional	98.55
TIGR00805	633	oat sodium-independent organic anion transporter.	98.54
PRK09952	438	shikimate transporter; Provisional	98.53
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.53
TIGR00893	399	2A0114 d-galactonate transporter.	98.53
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.53
PRK03633	381	putative MFS family transporter protein; Provision	98.51
PRK10642	490	proline/glycine betaine transporter; Provisional	98.46
PRK11462	460	putative transporter; Provisional	98.44
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.43
PRK09874	408	drug efflux system protein MdtG; Provisional	98.43
PRK11663	434	regulatory protein UhpC; Provisional	98.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.42
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.41
TIGR00891	405	2A0112 putative sialic acid transporter.	98.4
PRK03545	390	putative arabinose transporter; Provisional	98.39
PRK03893	496	putative sialic acid transporter; Provisional	98.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.37
PRK10489	417	enterobactin exporter EntS; Provisional	98.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.31
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.31
PRK12382	392	putative transporter; Provisional	98.3
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.3
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.28
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.28
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.26
COG2211	467	MelB Na+/melibiose symporter and related transport	98.26
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.25
PRK09528	420	lacY galactoside permease; Reviewed	98.24
PRK15075	434	citrate-proton symporter; Provisional	98.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.22
PTZ00207	591	hypothetical protein; Provisional	98.2
PLN00028	476	nitrate transmembrane transporter; Provisional	98.2
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.2
PRK11010	491	ampG muropeptide transporter; Validated	98.19
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.17
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.16
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.15
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.15
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.14
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.14
PRK10091	382	MFS transport protein AraJ; Provisional	98.13
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.12
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.12
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.1
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.09
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.06
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.06
PF13347	428	MFS_2: MFS/sugar transport protein	98.05
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.04
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.03
KOG0254	513	consensus Predicted transporter (major facilitator	98.02
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.02
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.01
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.0
PRK10133	438	L-fucose transporter; Provisional	97.99
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.98
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.97
KOG0569	485	consensus Permease of the major facilitator superf	97.96
TIGR00895	398	2A0115 benzoate transport.	97.95
PRK10504	471	putative transporter; Provisional	97.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.94
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.93
TIGR00900	365	2A0121 H+ Antiporter protein.	97.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.91
PRK11902	402	ampG muropeptide transporter; Reviewed	97.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.88
PRK12307	426	putative sialic acid transporter; Provisional	97.87
PRK10054	395	putative transporter; Provisional	97.86
PRK09848	448	glucuronide transporter; Provisional	97.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.8
PRK09669	444	putative symporter YagG; Provisional	97.77
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.76
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.75
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.75
TIGR00901	356	2A0125 AmpG-related permease.	97.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.68
KOG2533	495	consensus Permease of the major facilitator superf	97.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.57
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.5
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.49
PRK10429	473	melibiose:sodium symporter; Provisional	97.48
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.45
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.43
KOG2615	451	consensus Permease of the major facilitator superf	97.39
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.38
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.38
PRK11043	401	putative transporter; Provisional	97.37
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.33
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.31
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.29
TIGR00898	505	2A0119 cation transport protein.	97.28
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.25
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.2
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.19
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.13
PF12832	77	MFS_1_like: MFS_1 like family	97.13
PRK11462	460	putative transporter; Provisional	97.1
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.03
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.03
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.0
KOG2532	466	consensus Permease of the major facilitator superf	96.94
COG2211	467	MelB Na+/melibiose symporter and related transport	96.76
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.49
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.37
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.26
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.22
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.13
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.94
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.84
KOG0569	485	consensus Permease of the major facilitator superf	95.84
PRK10207	489	dipeptide/tripeptide permease B; Provisional	95.8
COG0477	338	ProP Permeases of the major facilitator superfamil	95.7
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.65
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	95.57
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.49
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.4
KOG2563	480	consensus Permease of the major facilitator superf	95.06
KOG2533	495	consensus Permease of the major facilitator superf	94.46
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.12
KOG3626	735	consensus Organic anion transporter [Secondary met	93.24
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.15
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	92.97
PRK09584	500	tppB putative tripeptide transporter permease; Rev	92.82
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.89
PRK03612	521	spermidine synthase; Provisional	91.25
COG2270	438	Permeases of the major facilitator superfamily [Ge	90.29
TIGR00805	633	oat sodium-independent organic anion transporter.	89.65
PTZ00207	591	hypothetical protein; Provisional	89.64
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	89.02
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	88.89
KOG3762	618	consensus Predicted transporter [General function	88.24
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	86.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	86.44
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	85.93
KOG2615	451	consensus Permease of the major facilitator superf	83.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	82.38
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	81.09
PF01891	205	CbiM: Cobalt uptake substrate-specific transmembra	80.18

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=4.3e-68  Score=552.21  Aligned_cols=414  Identities=32%  Similarity=0.485  Sum_probs=366.4

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---------h
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---------V   72 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---------~   72 (427)
                      ..||++|||+. +|+.|++..++.+..+|+..++.|.|..++.|++||++||.++|||+||.++++++.+         .
T Consensus        47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~  126 (571)
T KOG1237|consen   47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAM  126 (571)
T ss_pred             HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999 9999999999999999999999999999999999999999999999999999999887         2


Q ss_pred             hhcCCC-C---------CCC--CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHH
Q 037418           73 SYEYKP-E---------CIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGV  138 (427)
Q Consensus        73 ~~~~~~-~---------~~~--~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~i  138 (427)
                      ++.+.+ .         |..  ..+...++.+|.++++|+|+.|||+.++++||+|+.++++   ++.+.++||  |+.+
T Consensus       127 ~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~---~~~~~~fFnW~yf~~  203 (571)
T KOG1237|consen  127 IPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVE---VKGIPSFFNWFYFSQ  203 (571)
T ss_pred             hhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcch---hhCcccchhHHHHHH
Confidence            232222 1         221  3456789999999999999999999999999999887776   666778998  9999


Q ss_pred             HHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHHHhcccceeecCCCCChhHHHHHHHHHHHhhccCCCCCCCccc
Q 037418          139 VLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASEL  215 (427)
Q Consensus       139 NiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~~v~~~a~~~~~~~~~~~~~~l  215 (427)
                      |+|.+++.++..|+|   ||.++|+++++.|++++++|+.|++.|++.+|.|+|++.+.+|++++.+|++.+.+.+.+..
T Consensus       204 ~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~  283 (571)
T KOG1237|consen  204 NGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEEL  283 (571)
T ss_pred             HHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhc
Confidence            999999999999998   99999999999999999999999999999999999999999999999999988776553332


Q ss_pred             cccCCcccccccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHH
Q 037418          216 YERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFL  295 (427)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~  295 (427)
                       +.+. ......++++.++++|+|+++.+.+..++...+||++|+++||||.|++++++|+|.+.++||+++.|+.|.++
T Consensus       284 -~~~~-~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v  361 (571)
T KOG1237|consen  284 -YYDC-TDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV  361 (571)
T ss_pred             -cccc-cccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence             1110 11123355788899999999876655445567899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCC-ceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037418          296 EQADHLNRKVGK-LSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQS---KKYAPAIGFATSMVLAILCCITAAKVETR  371 (427)
Q Consensus       296 ~qa~~~d~~~~~-~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~---~~~s~~~ki~iG~~l~~ls~l~~~~~~~~  371 (427)
                      .|+.+||+++++ +++|+++++.+..+.+++++|+++++++|+.+|..   +++++++|+++|+++..++|.+++++|.+
T Consensus       362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~k  441 (571)
T KOG1237|consen  362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAK  441 (571)
T ss_pred             hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHH
Confidence            999999999998 99999999999999999999999999998876533   45799999999999999999999999999


Q ss_pred             HHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          372 RLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       372 ~~~~~~~~g~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                      |++.+.++     ..+.+++|++||+|||+++|+||+|.+++++||+|+|||++|
T Consensus       442 rl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM  491 (571)
T KOG1237|consen  442 RLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM  491 (571)
T ss_pred             Hhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH
Confidence            99877651     224589999999999999999999999999999999999998

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-68  Score=531.23  Aligned_cols=372  Identities=19%  Similarity=0.247  Sum_probs=301.0

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcC----CchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWK----ISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEY   76 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~----~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~   76 (427)
                      +-||||||||| +|++|++.+++    +++++|..++++|++++|++|++|||+|||+||+|||+.+|++++.+ |+.+.
T Consensus        31 ~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~  110 (498)
T COG3104          31 LWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA  110 (498)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence            46999999999 99999999888    99999999999999999999999999999999999999999999999 44433


Q ss_pred             CCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec-
Q 037418           77 KPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK-  153 (427)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~-  153 (427)
                      .++   ......++++|+++++|+|++|||++++++|||+++|||       ||..|+  |+++|+|++++++++++++ 
T Consensus       111 ~~~---~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-------rD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         111 ISS---VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-------RDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             ccc---cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-------cCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            210   134678999999999999999999999999999999986       699999  9999999999999999998 


Q ss_pred             --cchhHhHHHHHHHHHHHHHHHhcccceeecC--CCCChhHH---------H-HHHHHHHHhhccCCCCCCCccccccC
Q 037418          154 --PWKIRFGIPAIFTVVATLVFLSGTCSYRRRK--PLGSPLTT---------V-FRVFVASALKLFYRIPRNASELYERD  219 (427)
Q Consensus       154 --g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~--p~g~pl~~---------~-~~v~~~a~~~~~~~~~~~~~~l~~~~  219 (427)
                        ||+.+|++++++|.+++++|+++++++.+..  |+.+|+..         + .++++..+... +  ..+        
T Consensus       181 ~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l--~~~--------  249 (498)
T COG3104         181 NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-L--NQN--------  249 (498)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-H--HHH--------
Confidence              9999999999999999999999999887653  33344321         0 11111110000 0  000        


Q ss_pred             CcccccccccCCCcch-hhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHH
Q 037418          220 NVDEIYVVQHTRSLRC-LDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQA  298 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~-ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa  298 (427)
                                  ..+. +....+...    .+......+ ..+.+ |||||+++++|+++..++||++|+|++|++++|+
T Consensus       250 ------------~~~~~~~~~~i~~~----~~~~~~~~~-~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a  311 (498)
T COG3104         250 ------------TFSGVLLVISILIA----IIYFAEAFR-SPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYA  311 (498)
T ss_pred             ------------HHHHHHHHHHHHHH----HHHHHHHhc-cCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence                        0000 000000000    000000000 11234 8999999999999999999999999999999999


Q ss_pred             HH-hcCCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037418          299 DH-LNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIR  377 (427)
Q Consensus       299 ~~-~d~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~  377 (427)
                      ++ +|++..|+++||+|+|++||++++++.|+++++|+|+.++ +++|+++.|+++|+++++++++++.......     
T Consensus       312 ~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~-~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~-----  385 (498)
T COG3104         312 DRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG-NKQPSTPIKFALGLILAGLGFLILLLAGIWF-----  385 (498)
T ss_pred             HHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            55 8898777999999999999999999999999999999888 7899999999999999999999987765321     


Q ss_pred             hcCCCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          378 SHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       378 ~~g~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                        |     ++..++|+||++++|+++++||+|+||+|+|.++++||++|
T Consensus       386 --~-----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~  427 (498)
T COG3104         386 --G-----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL  427 (498)
T ss_pred             --c-----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence              1     01357999999999999999999999999999999999875

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=9.7e-52  Score=423.84  Aligned_cols=372  Identities=16%  Similarity=0.142  Sum_probs=287.4

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECI   81 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~   81 (427)
                      +.|||+|||++ .+..|+++.+|+++.+++.+++.+....++++++||+++||++||||++++|.+++.+....+..   
T Consensus        19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~---   95 (493)
T PRK15462         19 IWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA---   95 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH---
Confidence            56999999999 99999999999999999999999999999999999999999999999999999988872221210   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK  156 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~  156 (427)
                      .......+++++.++++|.|+++||.+++++|+|+++|++       |++.|+  |+++|+|+++++.++++++   ||+
T Consensus        96 ~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~-------R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         96 SEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR-------RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             hhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc-------ccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            0112234667888899999999999999999999887654       577888  9999999999999999996   999


Q ss_pred             hHhHHHHHHHHHHHHHHHhcccceeecCC-CCChhHH--HHHHH-----HHH-----HhhccCCCCCCCccccccCCccc
Q 037418          157 IRFGIPAIFTVVATLVFLSGTCSYRRRKP-LGSPLTT--VFRVF-----VAS-----ALKLFYRIPRNASELYERDNVDE  223 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif~~~~~~~~~~~p-~g~pl~~--~~~v~-----~~a-----~~~~~~~~~~~~~~l~~~~~~~~  223 (427)
                      ++|.+++++|++++++++.++|++.+..+ +.+|.++  ..+..     ...     .......   +.       ... 
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~-  237 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFW---KE-------WSV-  237 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHH-
Confidence            99999999999999999998887654311 1223211  00000     000     0000000   00       000 


Q ss_pred             ccccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHH-Hhc
Q 037418          224 IYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQAD-HLN  302 (427)
Q Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~~d  302 (427)
                                ..+-......       ....-+...+..+.|||||+..++++++..++||+.|+|++++++++++ ++|
T Consensus       238 ----------~~~~~~~~~~-------~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd  300 (493)
T PRK15462        238 ----------YALIVATIIG-------LGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVN  300 (493)
T ss_pred             ----------HHHHHHHHHH-------HHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence                      0000000000       0000000000122478999999999999999999999999999999995 599


Q ss_pred             CCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 037418          303 RKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLI  382 (427)
Q Consensus       303 ~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~  382 (427)
                      ++++|+++|++|+|++||++|+++.|++.++|.++.|+ +++||.++|+++|++++++||+++.+....    ++++   
T Consensus       301 ~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~-~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~---  372 (493)
T PRK15462        301 RDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG-NRTVRIWGKFALGLGLMSAGFCILTLSARW----SAMY---  372 (493)
T ss_pred             chhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC---
Confidence            99999999999999999999999999999999998776 679999999999999999999998876521    1111   


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          383 DKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       383 ~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                            .++|++|++..|+++++||+|++|.+++++++.||+++
T Consensus       373 ------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~  410 (493)
T PRK15462        373 ------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV  410 (493)
T ss_pred             ------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence                  25899999999999999999999999999999999874

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=8.4e-51  Score=429.78  Aligned_cols=327  Identities=21%  Similarity=0.331  Sum_probs=280.9

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCC--CCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYK--PECI   81 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~--~~~~   81 (427)
                      ||||||+ +|++|+++.+|+++++|+.+++.|.+++|++|++||++||+++||||+++++.+++.+..  ..+.  ++-.
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            7999999 999999999999999999999999999999999999999999999999999999988722  2121  1100


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec------
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK------  153 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~------  153 (427)
                      ...+....+++|+++++|+|++|||++++++|||++++++      +++++|+  |+++|+|+++++++.++++      
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~------~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f  154 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS------LRSRFFSFFYFAINAGSLISTIITPILRGDVGCF  154 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            1123455779999999999999999999999999875543      3789999  9999999999999999886      


Q ss_pred             ----cchhHhHHHHHHHHHHHHHHHhcccceeecCCCCChhHHHHHHHHHHHhhccCCCCCCCccccccCCccccccccc
Q 037418          154 ----PWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQH  229 (427)
Q Consensus       154 ----g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  229 (427)
                          ||+++|++|+++|++++++|..++|+|++.+|+++++.++.+++..+.+++......                  +
T Consensus       155 g~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------~  216 (654)
T TIGR00926       155 GCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------H  216 (654)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------c
Confidence                499999999999999999999999999888889999998889888887765322110                  0


Q ss_pred             CCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHHHhcCCCCCce
Q 037418          230 TRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLS  309 (427)
Q Consensus       230 ~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~~d~~~~~~~  309 (427)
                       ...+|+|+++...                .++++||+|++++++++++..++||++++|++|++++|+++||+++++++
T Consensus       217 -~~~~~ld~a~~~~----------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~  279 (654)
T TIGR00926       217 -WPLHWLDYAKDKH----------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFE  279 (654)
T ss_pred             -cchhHHHHhcccc----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEe
Confidence             0135777765432                24678999999999999999999999999999999999999999999999


Q ss_pred             ecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037418          310 VPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLD  374 (427)
Q Consensus       310 ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~  374 (427)
                      +|++++|++|+++++++.|+++..++|..+|++.++++++|+++|++++++++++++++|.++++
T Consensus       280 ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~  344 (654)
T TIGR00926       280 IQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNP  344 (654)
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999997666665554678999999999999999999999999987753

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.3e-46  Score=389.55  Aligned_cols=371  Identities=13%  Similarity=0.113  Sum_probs=285.2

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPEC   80 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~   80 (427)
                      +.|||+||+++ ++.+|+++++|+++++++.+++.+.+..|+++++||+++||++||||++++|.+++.+ +++....  
T Consensus        24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--  101 (489)
T PRK10207         24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--  101 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--
Confidence            57999999999 9999999999999999999999999999999999999999988999999999999888 3332211  


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cc
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PW  155 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~  155 (427)
                        ......+++++.+.++|.|+++||..++++|+|+++++|       +++.|+  |+++|+|+++|+.+++++.   ||
T Consensus       102 --~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~-------~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207        102 --LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR-------LDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             --ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-------hhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence              112234668899999999999999999999999876643       466777  9999999999999999997   99


Q ss_pred             hhHhHHHHHHHHHHHHHHHhcccceeec--CCCCChhH--HHHHHH------HHHHhhccCCCCCCCccccccCCccccc
Q 037418          156 KIRFGIPAIFTVVATLVFLSGTCSYRRR--KPLGSPLT--TVFRVF------VASALKLFYRIPRNASELYERDNVDEIY  225 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~~~~~~~~~~--~p~g~pl~--~~~~v~------~~a~~~~~~~~~~~~~~l~~~~~~~~~~  225 (427)
                      +++|.++++++.++++.+..+++++++.  +|++++..  ......      ....... .... +...           
T Consensus       173 ~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~-----------  239 (489)
T PRK10207        173 SVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWL-MHNV-EVAN-----------  239 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHH-Hhhh-hHHH-----------
Confidence            9999999999999999999888777553  23343331  111000      0010000 0000 0000           


Q ss_pred             ccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHH-HhcCC
Q 037418          226 VVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQAD-HLNRK  304 (427)
Q Consensus       226 ~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~~d~~  304 (427)
                              ..+........       ...-++..+.+ .+++++.+..+++++..++||.+++|+.+++++|++ ++|++
T Consensus       240 --------~~~~~~~~i~~-------~~f~~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~  303 (489)
T PRK10207        240 --------LVLIVLSIVVT-------IIFFREAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHE  303 (489)
T ss_pred             --------HHHHHHHHHHH-------HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccc
Confidence                    00000000000       00000001112 345677777888899999999999999999999997 58988


Q ss_pred             CCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 037418          305 VGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDK  384 (427)
Q Consensus       305 ~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~~~  384 (427)
                      ..|+++|++++|++||++++++.|+.++++.|+.+| ++++++++|+++|+++++++++++++.+...   +..      
T Consensus       304 ~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r-~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~------  373 (489)
T PRK10207        304 ILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK-GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA------  373 (489)
T ss_pred             ccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC------
Confidence            889999999999999999999999999999999887 8899999999999999999998876654211   111      


Q ss_pred             CCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          385 PDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       385 ~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                         ..++|+||+++.|+++|+||.|++|+++|++++.+|++|
T Consensus       374 ---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~  412 (489)
T PRK10207        374 ---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL  412 (489)
T ss_pred             ---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence               124789999999999999999999999999999999986

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=3.5e-45  Score=378.17  Aligned_cols=375  Identities=14%  Similarity=0.123  Sum_probs=285.4

Q ss_pred             hhHHHHHHhHH-HHHHHhhHh--cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNV--WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPE   79 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~--l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~   79 (427)
                      +.||++||++. ++.+|++++  +|++..+++.+++.+....++++++||+++||++||||++.++.+++.+....+.. 
T Consensus        20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~-   98 (475)
T TIGR00924        20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM-   98 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh-
Confidence            67999999999 999999988  99999999999999999999999999999999889999999999988872221110 


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---c
Q 037418           80 CIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---P  154 (427)
Q Consensus        80 ~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g  154 (427)
                         ..+.+.+++++.+.++|.|+++|+.+++++|+++++++++      +++.|+  |++.|+|+++|+.+++++.   |
T Consensus        99 ---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        99 ---SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR------RDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             ---cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc------ccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               1235567788999999999999999999999998765322      466777  9999999999999999987   9


Q ss_pred             chhHhHHHHHHHHHHHHHHHhcccceeecCCCCChhHHH-----H--HH----HHHHHhhccCCCCCCCccccccCCccc
Q 037418          155 WKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTV-----F--RV----FVASALKLFYRIPRNASELYERDNVDE  223 (427)
Q Consensus       155 ~~~~F~i~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~-----~--~v----~~~a~~~~~~~~~~~~~~l~~~~~~~~  223 (427)
                      |+++|.++++.++++.++++..++.+++.+++++++.+.     .  +.    +....+...........          
T Consensus       170 ~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  239 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA----------  239 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH----------
Confidence            999999999999999999988888776554433332110     0  00    00011110000000000          


Q ss_pred             ccccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHH-HHhc
Q 037418          224 IYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQA-DHLN  302 (427)
Q Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa-~~~d  302 (427)
                       ....+     ..+.+...+...    ....|    +.+++ |+++..++++++++.++||++|+|+.+++.+|+ +++|
T Consensus       240 -~~~~~-----~~~~~~~~~~~~----~~~~~----~~~~~-~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~  304 (475)
T TIGR00924       240 -NILLM-----TVTLAVIIFFFR----LAFKP----RLDAV-ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMH  304 (475)
T ss_pred             -HHHHH-----HHHHHHHHHHHH----HHHhc----cCCHH-HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence             00000     000011110000    00011    12333 445556789999999999999999999987766 5699


Q ss_pred             CCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 037418          303 RKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLI  382 (427)
Q Consensus       303 ~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~  382 (427)
                      ++++++++|+++++++|++++++++|+++++|.++.+| ++++++..|+++|++++++|++.+++...    .++.    
T Consensus       305 ~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~----  375 (475)
T TIGR00924       305 HEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GKDPTTPLKFTLGMLFCGASFLTFAASIW----FADA----  375 (475)
T ss_pred             ccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC----
Confidence            99999999999999999999999999999999888887 78899999999999999999999887631    1111    


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          383 DKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       383 ~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                           ..++|+||++++|++.|+||++++|+++|+++++||+++
T Consensus       376 -----~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~  414 (475)
T TIGR00924       376 -----GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL  414 (475)
T ss_pred             -----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence                 236899999999999999999999999999999999875

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=8.5e-45  Score=364.20  Aligned_cols=343  Identities=30%  Similarity=0.415  Sum_probs=235.6

Q ss_pred             HHHHHHHHHHHHH-hhhc-CC--CC-CCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHH
Q 037418           59 YWMLLVSSLAYSA-VSYE-YK--PE-CIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFF  133 (427)
Q Consensus        59 ~~~i~~g~~~~~~-~~~~-~~--~~-~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f  133 (427)
                      ||||++|++++.+ ++.+ +.  ++ .....+.+.+++||.++++|+|++|||++++++|||+++++++      +|++|
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~------~~~~F   74 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR------RDSFF   74 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH------HHHHH
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh------hhhhH
Confidence            7999999999998 2221 11  11 1124457899999999999999999999999999999875433      79999


Q ss_pred             H--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHHHhcccceeec-CCCCChhHH-HHHHHHHHHhhccC
Q 037418          134 S--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVFLSGTCSYRRR-KPLGSPLTT-VFRVFVASALKLFY  206 (427)
Q Consensus       134 ~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif~~~~~~~~~~-~p~g~pl~~-~~~v~~~a~~~~~~  206 (427)
                      +  ||++|+|++++.+..+++|   ||+++|++|+++|++++++|+.++++|++. +|.++++.+ ...+...+.+++..
T Consensus        75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (372)
T PF00854_consen   75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKL  154 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCC
T ss_pred             HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhc
Confidence            8  9999999999999999999   999999999999999999999999999988 678888887 44555666666544


Q ss_pred             CCCCCCccccccCCcccccccccCCCcchhhhhhccCCCccchhccCCcccc-cchhhHHHHHhhccchhhhhhhHhhHh
Q 037418          207 RIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRL-CRVTEIEETKGLLRMIPICLTFIIPGV  285 (427)
Q Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~-~~~~~ve~~k~~~~~l~l~~~~~~f~~  285 (427)
                      ..+.....+++......  .....+.....+.+.....       ....|.. ++++++|+.|.+.+.+|.+.+.++|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~  225 (372)
T PF00854_consen  155 AVPKGSSWLDWALFQYS--ERSIFGIIVFIRAAVIFFP-------EIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQ  225 (372)
T ss_dssp             CH-HHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHCC-------CHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHH
T ss_pred             ccccchHHHHHhhhhhh--hhhhhhhhhhccchhhhhh-------hhhhcccCCccceeeeeeeeeeccccCeEEEEeee
Confidence            43311110111000000  0000000011111111110       0111221 567889999999999999999999999


Q ss_pred             hhcccchhHHHHHHHhcCCCCC-ceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHH
Q 037418          286 VSSIGFTYFLEQADHLNRKVGK-LSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCIT  364 (427)
Q Consensus       286 ~~~Q~~s~~~~qa~~~d~~~~~-~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~  364 (427)
                      .+.|..+....|+.++|+.+++ +++|++++|++|++++++++|+++++++|+.++ ++++++++|+++|++++.+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~~~~~~k~~~G~~~~~~~~~~  304 (372)
T PF00854_consen  226 MYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQPSPPQKFGIGMVFAILAMFV  304 (372)
T ss_dssp             HCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-------HHHHHHH-HHHHHHHHT
T ss_pred             hhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cccchhhhhhhHHHHHHHHHHHH
Confidence            9999988888999999999999 999999999999999999999999999999887 88999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHH----HHHhcCCCCC
Q 037418          365 AAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIAC----FFIDQFPPLL  426 (427)
Q Consensus       365 ~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~le----f~~~~aP~~m  426 (427)
                      ++.+|.+|...++.+|         +.+.+|++|.|++.+++|++++++++|    ++++++|+.|
T Consensus       305 ~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m  361 (372)
T PF00854_consen  305 AAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSM  361 (372)
T ss_dssp             TTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSS
T ss_pred             HHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHH
Confidence            9999987765544433         456699999999999999999999999    6666666655

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=5.2e-42  Score=356.63  Aligned_cols=369  Identities=14%  Similarity=0.131  Sum_probs=278.5

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECI   81 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~   81 (427)
                      +.||++||+++ .+..|+++++|+++++++.+.+.+....+..++++|+++||++|||+++.++.+++.+.......   
T Consensus        31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~---  107 (500)
T PRK09584         31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW---  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH---
Confidence            67999999999 99999999999999999999999999999999999999999889999999999888762221110   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK  156 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~  156 (427)
                      .....+.+++++.+.++|.|+++|+.+++++|+|++++++       +++.++  |+++|+|+++|+.+++++.   ||+
T Consensus       108 ~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~-------~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~  180 (500)
T PRK09584        108 SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR-------LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS  180 (500)
T ss_pred             hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh-------hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence            0123456678889999999999999999999999876543       355666  9999999999999999997   999


Q ss_pred             hHhHHHHHHHHHHHHHHHhcccceeec--CCCCChhHH------HHHHHHHHHh-hccCCCCCCCccccccCCccccccc
Q 037418          157 IRFGIPAIFTVVATLVFLSGTCSYRRR--KPLGSPLTT------VFRVFVASAL-KLFYRIPRNASELYERDNVDEIYVV  227 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif~~~~~~~~~~--~p~g~pl~~------~~~v~~~a~~-~~~~~~~~~~~~l~~~~~~~~~~~~  227 (427)
                      ++|.++++.+.++++.++..++.+++.  +|+++|...      ...+...... ....+.+.    ...        ..
T Consensus       181 ~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~  248 (500)
T PRK09584        181 VAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE----IAR--------MA  248 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch----HHH--------HH
Confidence            999999999999998888877666543  233333221      1111111111 10000000    000        00


Q ss_pred             ccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHHH-hcCCCC
Q 037418          228 QHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADH-LNRKVG  306 (427)
Q Consensus       228 ~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-~d~~~~  306 (427)
                           ..+........          ...+.+..+ .+|+|+.+..+++++..++||++++|+.+.++.|+.+ +|+++.
T Consensus       249 -----~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~  312 (500)
T PRK09584        249 -----LGVVALGIVVI----------FGKEAFAMK-GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL  312 (500)
T ss_pred             -----HHHHHHHHHHH----------HHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc
Confidence                 00000000000          000001122 3456677777889999999999999999999999855 898999


Q ss_pred             CceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 037418          307 KLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPD  386 (427)
Q Consensus       307 ~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~~~~~  386 (427)
                      |+.+|++++|++|++++++++|+++++|.|+.+|    +++.+|+++|++++++++++++....    .+++        
T Consensus       313 g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r----~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~--------  376 (500)
T PRK09584        313 GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR----LPMPHKFAIGMVLCSGAFLVLPLGAK----FAND--------  376 (500)
T ss_pred             ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC----CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCC--------
Confidence            9999999999999999999999999999777544    56899999999999999999876542    1111        


Q ss_pred             CCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          387 DKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       387 ~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                       ...+|++|++++|+++|+||++++|+++|++++++|++|
T Consensus       377 -~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~  415 (500)
T PRK09584        377 -AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL  415 (500)
T ss_pred             -CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH
Confidence             246899999999999999999999999999999999976

>PRK10054 putative transporter; Provisional

Probab=99.58  E-value=3.1e-13  Score=136.68  Aligned_cols=156  Identities=14%  Similarity=0.137  Sum_probs=120.2

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECI   81 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~   81 (427)
                      +.-.++++... .+..|+++++|++..+++.+.+.+.....+..++.|+++||+ |||+++.++.++..+......  . 
T Consensus        17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~~~~~~~~--~-   92 (395)
T PRK10054         17 LLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFASGFIAIP--L-   92 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHHHHHH--H-
Confidence            34567777777 889999999999999999999998888888999999999995 999999998877766222111  0 


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchh
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKI  157 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~  157 (427)
                       ..+.+.+++...+.+.+.+.+.|...+...|..++++         +.+.++  |...|+|..+++.+.+++.  ||+.
T Consensus        93 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~  162 (395)
T PRK10054         93 -VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS---------KTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINL  162 (395)
T ss_pred             -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence             1234455555666777777888888888888875432         344555  8899999999999998876  9999


Q ss_pred             HhHHHHHHHHHHHHH
Q 037418          158 RFGIPAIFTVVATLV  172 (427)
Q Consensus       158 ~F~i~~v~~~i~~ii  172 (427)
                      .|.+.++..+++++.
T Consensus       163 ~f~~~~~~~~i~~i~  177 (395)
T PRK10054        163 PFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888777766543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.54  E-value=2.7e-12  Score=130.14  Aligned_cols=156  Identities=11%  Similarity=0.054  Sum_probs=124.0

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCC
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIG   82 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~   82 (427)
                      .-+++++.+. .+..|+.+++|++..+.+.+.+.......++.+++|.++||+ |||+++.++..+..+......    .
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~----~   95 (400)
T PRK11646         21 LVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMA----I   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHH----H
Confidence            4567777777 888999999999999999999999988899999999999995 999999999888877222211    0


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchhH
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKIR  158 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~~  158 (427)
                      ..+.+.+++...+.+++.|...|...+++.|..++++         +.+.++  +...++|..+|+.+++++.  ||++.
T Consensus        96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~  166 (400)
T PRK11646         96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ---------RGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLV  166 (400)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            1345677788889999999999999999988775432         344444  7888999999999888876  99999


Q ss_pred             hHHHHHHHHHHHHHH
Q 037418          159 FGIPAIFTVVATLVF  173 (427)
Q Consensus       159 F~i~~v~~~i~~iif  173 (427)
                      |.+.++..+++.++.
T Consensus       167 f~~~~~~~~~~~i~~  181 (400)
T PRK11646        167 CATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998877766655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.53  E-value=5.6e-13  Score=130.90  Aligned_cols=153  Identities=18%  Similarity=0.261  Sum_probs=122.6

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECI   81 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~   81 (427)
                      ..++..... .+..++.+++|.+..+.+.+.+.+.....++.++.|+++||+ ||||++.++.++..+.  +..+.    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----   82 (352)
T PF07690_consen    8 SGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFA----   82 (352)
T ss_dssp             HHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhh----
Confidence            334444444 444488889999999999999999999999999999999995 9999999998888773  22221    


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK  156 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~  156 (427)
                        .+.+.+.++..+.++|.+...|...+++.|.+++++         |...++  ..+.++|..+++.+++++.   ||+
T Consensus        83 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~  151 (352)
T PF07690_consen   83 --SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE---------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWR  151 (352)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC---------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC
T ss_pred             --hhHHHHhhhccccccccccccccccccccccchhhh---------hhhccccccchhhhhhhcccchhhhhhhccccc
Confidence              244578889999999999999999999999988743         344455  7889999999999998876   899


Q ss_pred             hHhHHHHHHHHHHHHHH
Q 037418          157 IRFGIPAIFTVVATLVF  173 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif  173 (427)
                      +.|.+.++..+++.++.
T Consensus       152 ~~~~~~~~~~~~~~il~  168 (352)
T PF07690_consen  152 WAFLISAILSLIAAILF  168 (352)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhH
Confidence            99999999888887643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.48  E-value=1.1e-11  Score=122.14  Aligned_cols=156  Identities=11%  Similarity=0.002  Sum_probs=117.5

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGE   83 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~   83 (427)
                      ++..... .+..|.. +++.+..+.+.+...+.....++.++.|+++||+ ||||+++++..+..+.  +....+ ....
T Consensus        13 ~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-~~~~   89 (365)
T TIGR00900        13 IGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVA-LLGG   89 (365)
T ss_pred             HHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence            3333344 5666766 4899999999999999999999999999999995 9999999988776551  111110 0001


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhH
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIR  158 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~  158 (427)
                      .+.+.++++..+.+++.|...|...+++.|.+++++         |.+.++  ..+.++|.++++.+++++.   ||+..
T Consensus        90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~  160 (365)
T TIGR00900        90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ---------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA  160 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            356778888999999999999999999999886542         344444  6888999999998888775   99999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 037418          159 FGIPAIFTVVATLVFL  174 (427)
Q Consensus       159 F~i~~v~~~i~~iif~  174 (427)
                      |.+.++..+++.+...
T Consensus       161 ~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       161 IWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888777666554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.41  E-value=9.6e-11  Score=120.98  Aligned_cols=146  Identities=14%  Similarity=0.106  Sum_probs=115.4

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ....++.+++|.+..+.+.+.+.+.....++.+++|+++||+ ||||.+.++..++.+......    ...+.+.+.++.
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~   97 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCG----VAPNLELMIIFR   97 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHh----CcCCHHHHHHHH
Confidence            456677788999999999999999999999999999999995 999999999888877222111    023567788899


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.++|.|...|...+++.|.+++++         |...+.  +.+.++|..+++.+++++.   ||++.|.+.+...++
T Consensus        98 ~~~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~  168 (485)
T TIGR00711        98 VIQGFGGGPLIPLSFSTLLNIYPPEK---------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGII  168 (485)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHH
Confidence            99999999999999999999886432         333444  6788999999998888775   999999887666555


Q ss_pred             HHHHH
Q 037418          169 ATLVF  173 (427)
Q Consensus       169 ~~iif  173 (427)
                      +.++.
T Consensus       169 ~~~~~  173 (485)
T TIGR00711       169 VVVVA  173 (485)
T ss_pred             HHHHH
Confidence            54443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.41  E-value=4.9e-11  Score=116.52  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=125.5

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECI   81 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~   81 (427)
                      +.+.++++... .+..|. +++|.+..+.+.+.........+..++.|+++||+ ||||++.++.++..+.......   
T Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~---   83 (352)
T cd06174           9 FLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAF---   83 (352)
T ss_pred             HHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHH---
Confidence            56777777777 666666 46799999999999999999999999999999995 9999999999888772221110   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK  156 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~  156 (427)
                       ..+.+.++++..+.+++.+...+...++..|.+++++         |...++  +.+.++|..+++.+.+.+.   +|+
T Consensus        84 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  153 (352)
T cd06174          84 -ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE---------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWR  153 (352)
T ss_pred             -hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             1356778889999999999999999999999887632         344444  7889999999999888776   799


Q ss_pred             hHhHHHHHHHHHHHHHHH
Q 037418          157 IRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif~  174 (427)
                      ..|.+.++..+++.+...
T Consensus       154 ~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         154 WLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988887777665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.41  E-value=4.4e-11  Score=119.30  Aligned_cols=146  Identities=14%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGL   95 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   95 (427)
                      ..++.+++|.++.+++.+.+.+.....+..++.|+++||+ ||||.+..+..+..+......    ...+.+.+.++..+
T Consensus        28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l  102 (385)
T TIGR00710        28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLA----LSNNIETLLVLRFV  102 (385)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHHH
Confidence            3456778999999999999999999999999999999995 999999999877776222111    02345677788899


Q ss_pred             HHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHH
Q 037418           96 IAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        96 i~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~  170 (427)
                      .++|.+...+...+++.|.+++++         +.+.+.  +...++|..+++.+.+++.   ||+..|.+.++..++..
T Consensus       103 ~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  173 (385)
T TIGR00710       103 QAFGASAGSVISQALVRDIYPGEE---------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS  173 (385)
T ss_pred             HHcchhHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999876432         333444  6788888888888888765   89999988777766665


Q ss_pred             HHHHh
Q 037418          171 LVFLS  175 (427)
Q Consensus       171 iif~~  175 (427)
                      +....
T Consensus       174 ~~~~~  178 (385)
T TIGR00710       174 ALIFF  178 (385)
T ss_pred             HHHHH
Confidence            55443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=1.1e-10  Score=115.98  Aligned_cols=158  Identities=10%  Similarity=0.035  Sum_probs=108.8

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHH-HHHHHHh--hhcCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVS-SLAYSAV--SYEYKP   78 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g-~~~~~~~--~~~~~~   78 (427)
                      +.-.+++.... .+..|+.+++|.+..+.+.+.+.+.....+..++.|.++||+ ||||.+++. ..+..+.  +...  
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~--   83 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAW--   83 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHh--
Confidence            44456666667 899999999999999999999999888888888899999996 998876554 4443331  1112  


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---  153 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---  153 (427)
                          ..+.+.+++...+.+.+.+...|...++..|..++++ +      .+.....  +.+.++|..+++.+.+++.   
T Consensus        84 ----~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  152 (375)
T TIGR00899        84 ----NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-R------EAVMFSSVMRAQISLAWVIGPPLAFWLALGF  152 (375)
T ss_pred             ----cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h------hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc
Confidence                1244555555556666666667777777666543211 1      1111122  5678999999998888774   


Q ss_pred             cchhHhHHHHHHHHHHHHHHH
Q 037418          154 PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif~  174 (427)
                      ||++.|.+.++..++..++.+
T Consensus       153 ~~~~~f~~~~~~~~~~~~~~~  173 (375)
T TIGR00899       153 GFTVMFLTAALAFVLCGVLVW  173 (375)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence            999999988887666654443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.40  E-value=7.3e-11  Score=118.86  Aligned_cols=143  Identities=12%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGL   95 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   95 (427)
                      ...+.+++|.+..+.+.+.+.+.....++.++.|+++||+ ||||.+..+.++..+......    ...+.+.++++..+
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~r~~  106 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSA----LAWNFTVLLISRIG  106 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHH
Confidence            4566778999999999999999888888888889999996 999999999888776221111    02356777888889


Q ss_pred             HHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHH
Q 037418           96 IAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        96 i~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~  170 (427)
                      .+++.+...|...+++.|.+++++         |.+.++  ..+.++|..+++.+.+.+.   ||++.|.+.++..++..
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~  177 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGK---------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITL  177 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhh---------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            999999999999999999886532         233444  6778899999988887765   99999998877665554


Q ss_pred             HH
Q 037418          171 LV  172 (427)
Q Consensus       171 ii  172 (427)
                      +.
T Consensus       178 ~~  179 (390)
T PRK03545        178 LL  179 (390)
T ss_pred             HH
Confidence            43

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.39  E-value=7.3e-11  Score=120.13  Aligned_cols=164  Identities=9%  Similarity=-0.024  Sum_probs=100.7

Q ss_pred             hhhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCC
Q 037418            2 FWADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPE   79 (427)
Q Consensus         2 ~~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~   79 (427)
                      ++...++++... .+..|+++++|++..+++.+.+.+.....+++++.|+++||+ ||||+++++..+..+. .+.....
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~   97 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVLFGPFFIYV   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            345556676666 899999999999999999999999999999999999999995 9999998876554431 1100000


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cc
Q 037418           80 CIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PW  155 (427)
Q Consensus        80 ~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~  155 (427)
                      .. .........+..+.++..|..-+...+...+.. ++.+++      +...++  ....++|..+++.+.+++.  +|
T Consensus        98 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~  169 (420)
T PRK09528         98 FA-PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVSRR------SGFEYGRARMWGSLGWALCAFIAGILFNINP  169 (420)
T ss_pred             HH-HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHHhh------ccccchhhHHhhhHHHHHHHHHHHHHHhcCc
Confidence            00 000001112222223333332222222222221 111111      111233  6677899999998888775  89


Q ss_pred             hhHhHHHHHHHHHHHHHHH
Q 037418          156 KIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~  174 (427)
                      +..|.+.++..+++.++.+
T Consensus       170 ~~~f~~~~~~~~~~~~~~~  188 (420)
T PRK09528        170 QINFWLGSGSALILLVLLF  188 (420)
T ss_pred             hHhHHHHHHHHHHHHHHHh
Confidence            9999887777666655544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=1.3e-10  Score=115.17  Aligned_cols=147  Identities=16%  Similarity=0.119  Sum_probs=115.5

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ....++.+++|.+..+.+.+.+++.....+..++.|+++||+ |||+++.++.++..+......    ...+.+.++++.
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   89 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQA----FAGAYVSLYILR   89 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHH----HHcCHHHHHHHH
Confidence            445667889999999999999999999999999999999995 999999999887766221111    012567888899


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.++|.|...|...+++.|.+++++         |.+.++  ..+.++|.++++.+.+++.   ||++.|.+.++..++
T Consensus        90 ~l~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        90 VLLGAAEAPFFPGIILIVASWFPASE---------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHH---------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999876432         344444  6788999999988888654   999999987776655


Q ss_pred             HHHHHH
Q 037418          169 ATLVFL  174 (427)
Q Consensus       169 ~~iif~  174 (427)
                      ..++..
T Consensus       161 ~~~~~~  166 (399)
T TIGR00893       161 WGVLWL  166 (399)
T ss_pred             HHHHhh
Confidence            554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.36  E-value=1.7e-10  Score=116.43  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=116.5

Q ss_pred             hHHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCC
Q 037418            4 ADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         4 ~eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~   83 (427)
                      .|-+..+........+.+++|.++.+++.+.+.+.....+.+++.|+++||+ ||||++.++.++..+......    ..
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~  100 (406)
T PRK11551         26 LEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFSLATA----QA  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHH----Hh
Confidence            4444444444444566678999999999999999999999999999999995 999999999877766211111    02


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhH
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIR  158 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~  158 (427)
                      .+.+.+.+...+.+++.|...|...+++.|.+++++         +.+..+  +.+.++|.++++.++..+.   +|+..
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  171 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHI  171 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence            356677788899999999999999999999886432         334444  7888999999988876654   89999


Q ss_pred             hHHHHHHHHHHHHH
Q 037418          159 FGIPAIFTVVATLV  172 (427)
Q Consensus       159 F~i~~v~~~i~~ii  172 (427)
                      |.+.++..++..++
T Consensus       172 ~~~~~~~~~~~~~~  185 (406)
T PRK11551        172 FYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98877665554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=2.8e-10  Score=114.06  Aligned_cols=154  Identities=16%  Similarity=0.202  Sum_probs=115.1

Q ss_pred             hhHHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCC
Q 037418            3 WADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIG   82 (427)
Q Consensus         3 ~~eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~   82 (427)
                      +.+.+.++-+......+.+++|.+..+++.+.+.+.....+..++.|+++||+ |||+++.++.++..+......    .
T Consensus        22 ~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~----~   96 (405)
T TIGR00891        22 LLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACG----F   96 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH----H
Confidence            44555555555455677788999999999999999999999999999999995 999999999877766211111    0


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec-----cc
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK-----PW  155 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~-----g~  155 (427)
                      ..+.+.++.+..+.++|.|...+...++..|.+++++         +.....  ..+.++|..+++.+.+.+.     +|
T Consensus        97 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w  167 (405)
T TIGR00891        97 APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL---------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW  167 (405)
T ss_pred             hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence            2356677888999999999999999999999886532         233333  5677888888887776653     49


Q ss_pred             hhHhHHHHHHHHHHH
Q 037418          156 KIRFGIPAIFTVVAT  170 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~  170 (427)
                      ++.|.+.++..++.+
T Consensus       168 ~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       168 RALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999987665554443

>TIGR00895 2A0115 benzoate transport

Probab=99.35  E-value=3.4e-10  Score=112.94  Aligned_cols=145  Identities=15%  Similarity=0.202  Sum_probs=110.8

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ....++.+++|.+..+++.+.+.+.....+..+++|+++||+ |||+++.++..+..+.......    ..+.+.++++.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  112 (398)
T TIGR00895        38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCAL----ATNVTQLLILR  112 (398)
T ss_pred             hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHH----ccchHHHHHHH
Confidence            445666778999999999999998888889999999999995 9999999998777662211110    13456777888


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.++|.|...+...+++.|.+++++         +...++  ..+.++|..+++.+.+++.   ||+..|.+.++...+
T Consensus       113 ~~~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  183 (398)
T TIGR00895       113 FLAGLGLGGLMPNLNALVSEYAPKRF---------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL  183 (398)
T ss_pred             HHHhcccccchhhHHHHHHHHcCHHh---------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence            99999999999999999999876432         233444  6788899999988887765   999999887644444


Q ss_pred             HHHH
Q 037418          169 ATLV  172 (427)
Q Consensus       169 ~~ii  172 (427)
                      ..++
T Consensus       184 ~~~~  187 (398)
T TIGR00895       184 LLLL  187 (398)
T ss_pred             HHHH
Confidence            4433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.35  E-value=2.9e-10  Score=114.67  Aligned_cols=153  Identities=16%  Similarity=0.050  Sum_probs=105.7

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHH-----HHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRA-----AAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKP   78 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A-----~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~   78 (427)
                      ...+++... .+..|++ ++|.+..++     +.+.+.+.....+..++.|+++||+ |||+.+..+.++..+...... 
T Consensus        26 ~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~-  102 (408)
T PRK09874         26 TGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMVLMG-  102 (408)
T ss_pred             HHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHHHHH-
Confidence            334444445 5666664 588886553     6677777777788889999999995 999999998877766222111 


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---  153 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---  153 (427)
                         ...+.+.++++..+.+++.+. .|...+...|++++++         +....+  ..+.++|.++++.+.+++.   
T Consensus       103 ---~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  169 (408)
T PRK09874        103 ---LAQNIWQFLILRALLGLLGGF-VPNANALIATQVPRNK---------SGWALGTLSTGGVSGALLGPLAGGLLADSY  169 (408)
T ss_pred             ---HHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               023456677777888887654 4667777778764422         233333  5778899999998888774   


Q ss_pred             cchhHhHHHHHHHHHHHHHH
Q 037418          154 PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif  173 (427)
                      ||+..|.+.++..+++.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~  189 (408)
T PRK09874        170 GLRPVFFITASVLFLCFLVT  189 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999998887766655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.35  E-value=3e-10  Score=118.37  Aligned_cols=143  Identities=13%  Similarity=0.066  Sum_probs=112.6

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ...+.+++|.+..+.+.+.+.|......+.+++|+++||+ |||+++.++..+..+.  +...      ..+.+.+.++.
T Consensus        29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~------a~~~~~li~~r  101 (495)
T PRK14995         29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAF------SPTASWLIATR  101 (495)
T ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH------cCCHHHHHHHH
Confidence            3455678999999999999999998888999999999995 9999999999888772  2222      23577888899


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.++|.|+..|...+.+.+.+.+++  +      |.+.++  ....++|..+|+.+++++.   ||++.|.+.....++
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~--~------r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~  173 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEK--Q------RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLV  173 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHH--H------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence            99999999999988888877764422  2      344454  7788999999999998885   999999987665555


Q ss_pred             HHHHH
Q 037418          169 ATLVF  173 (427)
Q Consensus       169 ~~iif  173 (427)
                      .+++.
T Consensus       174 ~~~l~  178 (495)
T PRK14995        174 VMGLT  178 (495)
T ss_pred             HHHHH
Confidence            54443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.34  E-value=5.4e-10  Score=110.87  Aligned_cols=145  Identities=16%  Similarity=0.137  Sum_probs=98.2

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc----cchHHHH-HHHHHHHHHh--hhcCCCCCCCCchhHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI----IGNYWML-LVSSLAYSAV--SYEYKPECIGEGQKIL   88 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~----lGr~~~i-~~g~~~~~~~--~~~~~~~~~~~~~~~~   88 (427)
                      ...+.+++|+|.++.+.....  +..+...++.|.++||+    +||||.+ +.+.++..+.  .....++   ..+.+.
T Consensus        11 ~~~~~~~~g~s~~~~g~~~~~--~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---~~~l~~   85 (356)
T TIGR00901        11 LPYWLRSKNVSLKTIGFFSLV--GLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---STDLPL   85 (356)
T ss_pred             HHHHHHHcCCCHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---chhHHH
Confidence            344445789999999888544  33344578999999997    5999985 4555555442  1112211   234444


Q ss_pred             HHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---c--------c
Q 037418           89 FYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---P--------W  155 (427)
Q Consensus        89 ~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g--------~  155 (427)
                      ++....+.+++.+...+...+++.|..++++         |....+  ..+.++|.++++.+++++.   |        |
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w  156 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEE---------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW  156 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            5555556678888899999999999885432         233333  5788899998888876664   6        9


Q ss_pred             hhHhHHHHHHHHHHHHHHH
Q 037418          156 KIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~  174 (427)
                      +..|.+.++..+++.++.+
T Consensus       157 r~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       157 GYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988887776654433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.33  E-value=5.9e-10  Score=112.51  Aligned_cols=152  Identities=11%  Similarity=0.017  Sum_probs=104.0

Q ss_pred             HHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhc--C-CCCCCCC
Q 037418            9 AYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYE--Y-KPECIGE   83 (427)
Q Consensus         9 ~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~--~-~~~~~~~   83 (427)
                      +..+. .+..|+++++|++..+.+.+.+.+.....++.+++|+++||+ ||||.++.+.....+ ..+.  . ..+....
T Consensus        18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (396)
T TIGR00882        18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFIYVFGPLLQS   96 (396)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            33444 688899999999999999999999999999999999999995 999999887665544 1111  0 0000000


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchhHh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKIRF  159 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~~F  159 (427)
                      .....+.++..+.+++.+...|...++..|.-    ++       +...|+  ....|+|..+++.+++.+.  ||+..|
T Consensus        97 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~-------~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f  165 (396)
T TIGR00882        97 NILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----RN-------SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVF  165 (396)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----hh-------cccccchhhhhcccHHHHHHHHHhhhhccCchHHH
Confidence            01122334455667777777777776655421    11       111233  6778999999999988876  999999


Q ss_pred             HHHHHHHHHHHHH
Q 037418          160 GIPAIFTVVATLV  172 (427)
Q Consensus       160 ~i~~v~~~i~~ii  172 (427)
                      .+.++..++..++
T Consensus       166 ~~~~~~~~~~~~~  178 (396)
T TIGR00882       166 WLGSGFALILMLL  178 (396)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877766655433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.33  E-value=4.8e-10  Score=113.48  Aligned_cols=142  Identities=11%  Similarity=0.079  Sum_probs=106.1

Q ss_pred             HhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHH
Q 037418           18 YLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIA   97 (427)
Q Consensus        18 yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~   97 (427)
                      .+.+++|.+..+.+...+.+.....+..++.|.++||+ ||||.+.++..+..+......    ...+.+.++....+.+
T Consensus        38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~----~~~~~~~l~~~~~l~G  112 (406)
T PRK15402         38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAIL----LAQSIEQFTLLRFLQG  112 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHHHHH
Confidence            35578999999999999999888889999999999995 999999999877766221111    0124566777888889


Q ss_pred             hhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHH
Q 037418           98 FGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus        98 ~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~ii  172 (427)
                      ++.+...+...+.+.|.+++++         +.+..+  +...++|..+++.+.+++.   ||++.|.+.++..+++.+.
T Consensus       113 ~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        113 IGLCFIGAVGYAAIQESFEEAD---------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             hHhhhHHHHHHHHHHHHhChhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            9999888888888888876532         223333  4556678888888877664   9999998877776666544


Q ss_pred             H
Q 037418          173 F  173 (427)
Q Consensus       173 f  173 (427)
                      .
T Consensus       184 ~  184 (406)
T PRK15402        184 L  184 (406)
T ss_pred             H
Confidence            3

>PRK10504 putative transporter; Provisional

Probab=99.32  E-value=9.3e-10  Score=113.58  Aligned_cols=158  Identities=11%  Similarity=0.039  Sum_probs=116.8

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECI   81 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~   81 (427)
                      +.+-+.++.+. .+-.|. +++|.+..+++.+.+.+.....++.+++|+++||+ ||||.++.+..+..+......    
T Consensus        20 ~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~----   93 (471)
T PRK10504         20 FMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCA----   93 (471)
T ss_pred             HHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHH----
Confidence            34445666666 555554 56999999999999888888888999999999995 999999988776665221111    


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK  156 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~  156 (427)
                      ...+.+.++++..+.++|.|...|...+.+.|.+++++         +.+.+.  ....++|..+++.+.+++.   ||+
T Consensus        94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~  164 (471)
T PRK10504         94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ---------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH  164 (471)
T ss_pred             HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence            02345677788999999999999999999988775422         233444  6777899999998888775   999


Q ss_pred             hHhHHHHHHHHHHHHHHHh
Q 037418          157 IRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif~~  175 (427)
                      +.|.+......++.+....
T Consensus       165 ~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        165 WIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887666555554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.31  E-value=5.8e-10  Score=112.09  Aligned_cols=140  Identities=9%  Similarity=-0.071  Sum_probs=97.9

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccch----HHHHHHHHHHHHHhhhcCCCCCCCCchhHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGN----YWMLLVSSLAYSAVSYEYKPECIGEGQKILF   89 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr----~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~   89 (427)
                      .+..|++ ++|.|..+++.+.+++.....++.+++|.++||+ ||    +|.+.++..+..+.....      ..+.+.+
T Consensus        26 ~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l   97 (382)
T PRK11128         26 FWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAVAFWFG------AHSFWLL   97 (382)
T ss_pred             hHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHh------cccHHHH
Confidence            4667775 5899999999999999999999999999999996 87    344433333222221111      2356777


Q ss_pred             HHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHHHHHH
Q 037418           90 YTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFT  166 (427)
Q Consensus        90 ~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~  166 (427)
                      ++...+.+++.+...|...++..|. .++..        ++........++|..+|+.+++++.   ||+..|.+.++..
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~--------~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~  168 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTW-QKQIG--------LDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV  168 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHH-Hhhcc--------CCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            7778888999999999888877764 22111        1111115666899999999998875   9999998777655


Q ss_pred             HHHH
Q 037418          167 VVAT  170 (427)
Q Consensus       167 ~i~~  170 (427)
                      ++..
T Consensus       169 ~~~~  172 (382)
T PRK11128        169 ASML  172 (382)
T ss_pred             HHHH
Confidence            4443

>PRK12382 putative transporter; Provisional

Probab=99.29  E-value=1.3e-09  Score=109.58  Aligned_cols=141  Identities=11%  Similarity=-0.038  Sum_probs=105.7

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-h----hcCCCCCCCCchhHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-S----YEYKPECIGEGQKIL   88 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~----~~~~~~~~~~~~~~~   88 (427)
                      .+..|+.+++|.|..+.+.+.+.+.....++.++.|+++||+ ||||.+..+.+...+. +    ....+ .....+.+.
T Consensus        37 ~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  114 (392)
T PRK12382         37 VIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLAAILP-VSAPFKFAL  114 (392)
T ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence            566788899999999999999999999999999999999995 9999999987776541 1    11110 001234567


Q ss_pred             HHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           89 FYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        89 ~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      ++++..+.++|.+...|...+.+.|..++++         |.+..+  ..+.++|..+++.+++++.   ||+..+.+..
T Consensus       115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  185 (392)
T PRK12382        115 LVVGRLILGFGESQLLTGALTWGLGLVGPKH---------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTM  185 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence            7888899999999998888888888775432         233333  5777888888888887764   8887666544


Q ss_pred             HH
Q 037418          164 IF  165 (427)
Q Consensus       164 v~  165 (427)
                      +.
T Consensus       186 ~~  187 (392)
T PRK12382        186 VL  187 (392)
T ss_pred             HH
Confidence            43

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.29  E-value=9.5e-10  Score=110.89  Aligned_cols=143  Identities=10%  Similarity=-0.065  Sum_probs=107.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-h-hcCC--CCCCCCchhHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-S-YEYK--PECIGEGQKILF   89 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~-~~~~--~~~~~~~~~~~~   89 (427)
                      .+..|+.+++|.+..+++.+.+.+.....++.++.|+++||+ ||||++..+.+++.+. + ....  .......+...+
T Consensus        37 ~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (399)
T PRK05122         37 VLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL  115 (399)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence            677889999999999999999999999999999999999995 9999999998877651 1 1111  000001234567


Q ss_pred             HHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418           90 YTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI  164 (427)
Q Consensus        90 ~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v  164 (427)
                      ++...+.++|.+...++..+...|.+++++         |.+...  ..+.++|..+|+.+++++.   ||+..|.++++
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  186 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVGALH---------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIML  186 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcChhh---------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            788889999999999999999989876543         222333  4667778888877777664   89988876655


Q ss_pred             HH
Q 037418          165 FT  166 (427)
Q Consensus       165 ~~  166 (427)
                      ..
T Consensus       187 ~~  188 (399)
T PRK05122        187 LA  188 (399)
T ss_pred             HH
Confidence            43

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.29  E-value=4.9e-10  Score=110.88  Aligned_cols=147  Identities=12%  Similarity=0.124  Sum_probs=112.3

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ....++.+++|++..+.+.+.+.+.....++.+++|+++||+ |||+.+.++.++..+......    ...+.+.++++.
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   90 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFG----FSTSLWVMAALW   90 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHH----HhhhHHHHHHHH
Confidence            456788889999999999999999999999999999999995 999999999888776221111    013567788889


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHh-hhhceec---cchhHhHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIAL-IAFPYIK---PWKIRFGIPAIFTV  167 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~-~~~~~l~---g~~~~F~i~~v~~~  167 (427)
                      .+.+++.|...|...+++.|.+++++         |...++  ..+.++|..+++ .+...+.   ||+..|.+.++..+
T Consensus        91 ~~~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        91 ALNGIFQGMGWPPCGRTVTKWFSRSE---------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             HHHHhhccccCCchHHHHHHhcCHhh---------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            99999999999999999999886533         233333  567788888887 4444443   89999988777665


Q ss_pred             HHHHHHH
Q 037418          168 VATLVFL  174 (427)
Q Consensus       168 i~~iif~  174 (427)
                      +..++.+
T Consensus       162 ~~~~~~~  168 (379)
T TIGR00881       162 IVSLICF  168 (379)
T ss_pred             HHHHHHh
Confidence            5444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.28  E-value=5.9e-10  Score=111.25  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=109.5

Q ss_pred             hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHh
Q 037418           19 LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAF   98 (427)
Q Consensus        19 l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~   98 (427)
                      +.+++|.+..+++.+.+.+.....++.+++|+++||+ |||+.+..+.++..+......    ...+.+.+++...+.++
T Consensus        17 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~l~g~   91 (377)
T PRK11102         17 IAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACA----LAQTIDQLIYMRFLHGL   91 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999999995 999999999888776222111    01245667778888999


Q ss_pred             hcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHH
Q 037418           99 GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus        99 g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif  173 (427)
                      +.+...+...++..|.+++++         +.+.++  +...++|..+++.+.+++.   ||+..|.+.++..++..+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         92 AAAAASVVINALMRDMFPKEE---------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876432         334444  7888999999998888775   99999988777666655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.27  E-value=1.4e-09  Score=110.01  Aligned_cols=138  Identities=12%  Similarity=0.123  Sum_probs=109.9

Q ss_pred             hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHh
Q 037418           19 LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAF   98 (427)
Q Consensus        19 l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~   98 (427)
                      +.+++|.+..+.+...+.+.....+..++.|.++||+ ||||.+..+.++..+......    ...+.+.+++...+.++
T Consensus        46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~r~l~G~  120 (394)
T PRK10213         46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVS----FANSFSLLLIGRACLGL  120 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHH----HHChHHHHHHHHHHHHH
Confidence            4467999999999999999998889999999999995 999999999998877221111    02357788889999999


Q ss_pred             hcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHH
Q 037418           99 GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        99 g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~  170 (427)
                      +.|...|...+++.|.+++++         +.....  ..+.|+|.++++.+.+++.   ||++.|.+.++..++..
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~---------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRT---------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999886432         333444  6678999999999988875   99999988776554443

>PRK03699 putative transporter; Provisional

Probab=99.26  E-value=3e-09  Score=107.43  Aligned_cols=153  Identities=8%  Similarity=0.047  Sum_probs=112.0

Q ss_pred             HHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCC
Q 037418            5 DIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIG   82 (427)
Q Consensus         5 eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~   82 (427)
                      +....+.+..+..-+.+++|+|..+.+.+.+.+.....+..+++|+++||+ ||||++.++.++..+.  +...      
T Consensus        19 ~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~------   91 (394)
T PRK03699         19 TGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMF------   91 (394)
T ss_pred             HHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHH------
Confidence            333333444333445678999999999999999988889999999999995 9999999988777662  2212      


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cch
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWK  156 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~  156 (427)
                      ..+.+.++++..+.+++.|...++..+.+.|.+++++         |....+  +...++|..+++.+.+++-    ||+
T Consensus        92 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         92 SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            2356677788889999999999999999999885432         222333  5677888888887776542    899


Q ss_pred             hHhHHHHHHHHHHHHHH
Q 037418          157 IRFGIPAIFTVVATLVF  173 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif  173 (427)
                      +.|.+.++..++..++.
T Consensus       163 ~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        163 WVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998776665554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=1.1e-09  Score=111.23  Aligned_cols=147  Identities=15%  Similarity=0.148  Sum_probs=111.8

Q ss_pred             HHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            5 DIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         5 eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      +.+.++.+..+..++.+++|.++.+++.+.+.+.....+..+++|+++||+ |||+++.++.++..+......    ...
T Consensus        30 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~----~~~  104 (426)
T PRK12307         30 DGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSG----LAS  104 (426)
T ss_pred             HHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHH----HHh
Confidence            334443333444566678999999999999999999999999999999995 999999999988877221111    023


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHh
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRF  159 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F  159 (427)
                      +.+.++++..+.++|.|...+...+++.|.+++++         |....+  ..+.++|.++++.+.+++.   ||++.|
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f  175 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF  175 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH---------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence            56778889999999999999999999999876542         222333  6788899999887777654   999999


Q ss_pred             HHHHHH
Q 037418          160 GIPAIF  165 (427)
Q Consensus       160 ~i~~v~  165 (427)
                      .++.+.
T Consensus       176 ~i~~~~  181 (426)
T PRK12307        176 FVGLLP  181 (426)
T ss_pred             HHHHHH
Confidence            876544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.24  E-value=1.8e-09  Score=108.77  Aligned_cols=141  Identities=13%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGL   95 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   95 (427)
                      ..++.+++|.+..+++.+.+.+.....++.++.|+++||+ ||||.+.++..+..+......    ...+.+.++++..+
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~  105 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVAL----FAHSLTVLIAASAI  105 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHHH
Confidence            3456678999999999999999999999999999999995 999999998877766221111    02345677788888


Q ss_pred             HHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHH
Q 037418           96 IAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        96 i~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~  170 (427)
                      .+++.|...+...++..|.+++++         +....+  ..+.++|..+++.+.+++.   ||+..|.+.++..++..
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        106 QGLGTGVGGVMARTLPRDLYEGTQ---------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            999988887877778888765422         223333  4667777778877777664   89999998766554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.24  E-value=1.8e-09  Score=107.14  Aligned_cols=145  Identities=13%  Similarity=0.057  Sum_probs=100.0

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc-
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG-   84 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~-   84 (427)
                      .+++... .+..|+++++|++..+++.+.+.+.....++++++|+++||+ |||+++.++.++..+......  .  .. 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~--~--~~~   89 (366)
T TIGR00886        15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAG--L--AVQ   89 (366)
T ss_pred             HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH--H--Hhh
Confidence            3444445 444478899999999999999999999999999999999995 999999999888877222111  0  12 


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---------
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---------  153 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---------  153 (427)
                      +.+.++++..+.+++.+.. +...++++|.+++++         |....+  ....|+|..+++.+.+.+.         
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  159 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI---------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL  159 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh---------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5667778888889987765 445778888876432         222333  3455666665554443321         


Q ss_pred             ----cchhHh-HHHHHHH
Q 037418          154 ----PWKIRF-GIPAIFT  166 (427)
Q Consensus       154 ----g~~~~F-~i~~v~~  166 (427)
                          +|++.| .+.++..
T Consensus       160 ~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       160 PAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             cccccccchhHHHHHHHH
Confidence                689888 4434333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.23  E-value=8.6e-10  Score=109.03  Aligned_cols=146  Identities=13%  Similarity=0.049  Sum_probs=107.4

Q ss_pred             HHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHH
Q 037418           13 WVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        13 ~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      ..+..++.+++|.++.+++.+.+++.....++.++.|+++||+ |||+++.++.++..+......    ...+.+.++++
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   97 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYA----IADSLAALYLT   97 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            3577888899999999999999999999999999999999995 999999999888776221111    02356677788


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhc-eec--cchhHhHHHHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFP-YIK--PWKIRFGIPAIFTV  167 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~-~l~--g~~~~F~i~~v~~~  167 (427)
                      ..+.++|.|...+...+...+.++++          |.....  ..+.++|.++++.+.+ ..+  ||++.|.+.++..+
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  167 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFPDK----------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL  167 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcCcc----------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            88999999988777777777766432          222233  5667788776443333 333  89999998877766


Q ss_pred             HHHHHH
Q 037418          168 VATLVF  173 (427)
Q Consensus       168 i~~iif  173 (427)
                      +..+..
T Consensus       168 ~~~~~~  173 (377)
T TIGR00890       168 LVIVLG  173 (377)
T ss_pred             HHHHHH
Confidence            655443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.22  E-value=5.7e-09  Score=105.54  Aligned_cols=136  Identities=9%  Similarity=0.029  Sum_probs=101.4

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLI   96 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li   96 (427)
                      ..+.++++.+..+.+.+.+.+.....++.+++|+++||+ ||||+++++..+..+......  +  ..+   .++...+.
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~~--~--~~~---~~~~r~l~   98 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLML--F--GIH---PLLAYGLV   98 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHHH--H--HHH---HHHHHHHH
Confidence            344578999999999999999999999999999999995 999999999988776211111  0  112   15566789


Q ss_pred             HhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchhHhHHHHHHHHHH
Q 037418           97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKIRFGIPAIFTVVA  169 (427)
Q Consensus        97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~~F~i~~v~~~i~  169 (427)
                      ++|.|+..|...+++.|.+++++         +.+..+  ....++|..+|+.+++++.  .|+..|.+.+...+++
T Consensus        99 G~~~a~~~pa~~a~i~~~~~~~~---------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~  166 (393)
T PRK11195         99 GIGAAAYSPAKYGILTELLPGEK---------LVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987543         344444  5667788888988888776  5666666655544433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.22  E-value=1.9e-09  Score=109.56  Aligned_cols=157  Identities=12%  Similarity=0.019  Sum_probs=112.5

Q ss_pred             hhHHHHHHhHH---HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh-----h
Q 037418            3 WADIFAAYAMW---VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS-----Y   74 (427)
Q Consensus         3 ~~eRfs~Yg~~---~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~-----~   74 (427)
                      +++-++..+..   .....+.++++.+..+++.+.+.+.....+..++.|+++||+ ||||.+..+..+..+..     .
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         24 IARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHH
Confidence            34444555543   334444567888999999999999999999999999999996 99999888776655411     1


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           75 EYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      ...    ...+.+.+++...+.+++.|...+...+++.|..++++         +.+...  +...++|..+|+.+++++
T Consensus       103 ~~~----~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489        103 AFL----PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN---------LMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHc----CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH---------HHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            111    02245566677778888888888888888888765432         233333  678899999999988876


Q ss_pred             c---cchhHhHHHHHHHHHHHHHH
Q 037418          153 K---PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       153 ~---g~~~~F~i~~v~~~i~~iif  173 (427)
                      .   ||++.|.+.++..+++.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        170 IAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHH
Confidence            4   89999988877776655443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.20  E-value=8.1e-09  Score=105.64  Aligned_cols=156  Identities=17%  Similarity=0.263  Sum_probs=102.5

Q ss_pred             hHHHHHHhHHHHHHHhhHhcC---CchHHHHHHHHHHHHHHH---HhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhc
Q 037418            4 ADIFAAYAMWVMITYLTNVWK---ISLVRAAAIVNFFWGTVL---MLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYE   75 (427)
Q Consensus         4 ~eRfs~Yg~~~l~~yl~~~l~---~~~~~A~~~~~~~~~~~y---~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~   75 (427)
                      .|.+.+.-+..+..++.++++   .+..+...+...+.....   ++.+++|+++||+ ||||++.++..++.+  .+..
T Consensus        33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~  111 (432)
T PRK10406         33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIA  111 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHh
Confidence            344444443456678888874   555554444455543333   6777899999996 999999999988876  2211


Q ss_pred             CCCCCCC--CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce
Q 037418           76 YKPECIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY  151 (427)
Q Consensus        76 ~~~~~~~--~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~  151 (427)
                      ..+....  ......+.+...+.++|.|+..|...++++|.+++++         |....+  +.+.+.|.++++.+...
T Consensus       112 ~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---------rg~~~~~~~~~~~~G~~~~~~~~~~  182 (432)
T PRK10406        112 CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR---------KGFYASFQYVTLIGGQLLALLVVVV  182 (432)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc---------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111100  0123457788999999999999999999999877542         222223  67788888887655432


Q ss_pred             e----------c-cchhHhHHHHHHHHHH
Q 037418          152 I----------K-PWKIRFGIPAIFTVVA  169 (427)
Q Consensus       152 l----------~-g~~~~F~i~~v~~~i~  169 (427)
                      +          . ||+..|.+.++..++.
T Consensus       183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        183 LQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            2          2 9999999877655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.20  E-value=4.1e-09  Score=106.05  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=108.2

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLI   96 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li   96 (427)
                      ..+.+++|.++.+.+.+.+.+.....++.++.|+++||+ |||+.++++..+..+.......    ..+.+.++.+..+.
T Consensus        27 p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~  101 (392)
T PRK10473         27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSL----AETSSLFLAGRFLQ  101 (392)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHH
Confidence            344567999999999999998888888899999999995 9999999998877762221110    12455667778889


Q ss_pred             HhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHH
Q 037418           97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATL  171 (427)
Q Consensus        97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~i  171 (427)
                      +++.|...+...+++.|.+++++         |.+..+  +...++|..+++.+.+++.   ||+..|.+.++..++..+
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRR---------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence            99999988888999999876532         344444  6778899888888877763   899999887776655554


Q ss_pred             HH
Q 037418          172 VF  173 (427)
Q Consensus       172 if  173 (427)
                      +.
T Consensus       173 ~~  174 (392)
T PRK10473        173 LS  174 (392)
T ss_pred             HH
Confidence            43

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.20  E-value=9.4e-09  Score=104.69  Aligned_cols=154  Identities=16%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             hhHHHHHHhHH-HHHHH--------hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-
Q 037418            3 WADIFAAYAMW-VMITY--------LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-   72 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~y--------l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-   72 (427)
                      ++--+.+|++. .+...        +.+++|.+..+++..++++.....++.+++|+++||+ |||++++.+..+..+. 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~   95 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLAC   95 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHH
Confidence            33345666654 33332        3356899999999999999988889999999999995 9999999998777762 


Q ss_pred             -hhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhh
Q 037418           73 -SYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAF  149 (427)
Q Consensus        73 -~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~  149 (427)
                       +...      ..+.+.++++..+.++|.|..-+...+...|.+++++         +.+..+  ..+.++|..+|+.++
T Consensus        96 ~~~~~------a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~lg  160 (413)
T PRK15403         96 AATLF------TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK---------GIKLMAIITSIVLVAPIIGPLSG  160 (413)
T ss_pred             HHHHH------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence             1112      2356678888999999988766666677778776543         222333  677889999998888


Q ss_pred             ceec---cchhHhHHHHHHHHHHHHH
Q 037418          150 PYIK---PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       150 ~~l~---g~~~~F~i~~v~~~i~~ii  172 (427)
                      +++.   ||++.|.+.++..+++.+.
T Consensus       161 ~~l~~~~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        161 AALMHFVHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            7775   9999999887776666544

>PRK09848 glucuronide transporter; Provisional

Probab=99.19  E-value=5.2e-09  Score=107.56  Aligned_cols=131  Identities=11%  Similarity=0.107  Sum_probs=86.9

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc---cchHHHH-HHHHHHHHH-hhhcCC-C-CCCCCchh
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI---IGNYWML-LVSSLAYSA-VSYEYK-P-ECIGEGQK   86 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~---lGr~~~i-~~g~~~~~~-~~~~~~-~-~~~~~~~~   86 (427)
                      .+..|+++.+|++..+++.+.........+..++.|+++||.   +||||.. .++.+...+ ...... + ........
T Consensus        30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (448)
T PRK09848         30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV  109 (448)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence            466899999999999999999999999999999999999995   5888855 555554443 111111 1 01111223


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-------HHHHHHHHHHHhhhhcee
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-------FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-------Y~~iNiG~~i~~~~~~~l  152 (427)
                      +..+....+..++.+++.+...++..+.-.+.+  |      |.....       ..+.++|..+++.+.+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~------r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S------RARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334455667788899999888888776654433  3      222221       335567777777666544

>PRK11043 putative transporter; Provisional

Probab=99.18  E-value=7.9e-09  Score=104.30  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=107.2

Q ss_pred             hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHh
Q 037418           19 LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAF   98 (427)
Q Consensus        19 l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~   98 (427)
                      +.+++|.+..+++.+.+++.....++.++.|+++||+ |||+.+..+..+..+......  .  ..+.+.+.++..+.++
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~~~l~G~  106 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGML--W--VESAAQLLVLRFVQAV  106 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHH--H--hcCHHHHHHHHHHHHh
Confidence            5678999999999999999999999999999999995 999999998877765221111  0  1245667778888889


Q ss_pred             hcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHH
Q 037418           99 GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus        99 g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif  173 (427)
                      |.+...+...++..|.+++++         +.+.++  ....++|..+++.+.+++.   ||+..|.+.++..++..+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        107 GVCSAAVIWQALVIDRYPAQK---------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             hhHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            888888888888888876532         233444  5567888888888888775   99999988776666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.18  E-value=8.6e-09  Score=103.65  Aligned_cols=135  Identities=13%  Similarity=0.001  Sum_probs=94.2

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHH----HHHHHHHHHHHhhhcCCCCCCCCchhHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW----MLLVSSLAYSAVSYEYKPECIGEGQKILF   89 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~----~i~~g~~~~~~~~~~~~~~~~~~~~~~~~   89 (427)
                      .+..|++ ++|.|.++.+.+.+.+.....+.+++.|.++||+ ||++    .+.++..+..+.....      ..+.+.+
T Consensus        26 ~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~l   97 (382)
T TIGR00902        26 FFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAAFSAG------AHNAWLL   97 (382)
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHh------hhhHHHH
Confidence            4666774 6899999999999999999999999999999996 8743    3333332222222212      2356777


Q ss_pred             HHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418           90 YTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI  164 (427)
Q Consensus        90 ~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v  164 (427)
                      ++...+.+.+.+...|...++..+ ++    ++      +...+.  ....++|..+++.+.+++.   ||+..|.+.++
T Consensus        98 ~~~~~l~~~~~~~~~p~~~al~~~-~~----~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~  166 (382)
T TIGR00902        98 FIAIGLFALFFSAGMPIGDALANT-WQ----KQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA  166 (382)
T ss_pred             HHHHHHHHHHHccchhHHHHHHHH-HH----HH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            777777888888888887777543 21    11      222343  6788899999998888775   99999987665


Q ss_pred             HHH
Q 037418          165 FTV  167 (427)
Q Consensus       165 ~~~  167 (427)
                      ...
T Consensus       167 ~~~  169 (382)
T TIGR00902       167 GLA  169 (382)
T ss_pred             HHH
Confidence            533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.18  E-value=3.8e-09  Score=107.70  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=103.7

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc---cchHHH-HHHHHHHHHH-hhhc-CCC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI---IGNYWM-LLVSSLAYSA-VSYE-YKP   78 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~---lGr~~~-i~~g~~~~~~-~~~~-~~~   78 (427)
                      .+.+.-+. .+..|+++.+|.+.++++.+..+......+..++.|+++||.   +||||. ++++.....+ .+.. ..+
T Consensus        12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~   91 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP   91 (437)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC
Confidence            33444444 688899999999999999999999999999999999999984   698775 5566655554 1111 111


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee----
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI----  152 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l----  152 (427)
                      +.........+++...+..++.+++.+...++..|..++  ++|      |.+..+  ....++|..++..+.+.+    
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~------R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~  163 (437)
T TIGR00792        92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PRE------RESLSTFRRFGATLGGLLVAVIVLPLVSYF  163 (437)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111112234444556667888888888888888887543  333      333333  456677766554432211    


Q ss_pred             -----c-cchhHhHHHHHHHHHHHHHH
Q 037418          153 -----K-PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       153 -----~-g~~~~F~i~~v~~~i~~iif  173 (427)
                           . ||+..|.+.++...+..++.
T Consensus       164 ~~~~~~~g~~~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       164 GGGDDKFGWFMFALVLALIGVVSLIIC  190 (437)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHHH
Confidence                 1 78888877776665555443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=4.7e-09  Score=105.54  Aligned_cols=144  Identities=11%  Similarity=0.142  Sum_probs=109.8

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALG   94 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (427)
                      +...+.+++|.+.++++.+.+.+.....+..++.|+++||+ |||+++..+..+..+......    ...+.+.++++..
T Consensus        25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~----~~~~~~~l~~~r~   99 (382)
T PRK10091         25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFT----LSSSYLMLAIGRL   99 (382)
T ss_pred             ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHH
Confidence            33456678999999999999999999999999999999996 999999999888877222111    0235678888999


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVA  169 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~  169 (427)
                      +.+++.|...+...+...|.+++++         +.+...  ..+.++|..+++.+++++.   ||++.|.+.++..++.
T Consensus       100 l~G~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  170 (382)
T PRK10091        100 VSGFPHGAFFGVGAIVLSKIIKPGK---------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV  170 (382)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCChHH---------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence            9999999988888888777664422         233343  4677888888887777664   9999999887765555


Q ss_pred             HHH
Q 037418          170 TLV  172 (427)
Q Consensus       170 ~ii  172 (427)
                      .+.
T Consensus       171 ~~~  173 (382)
T PRK10091        171 LAS  173 (382)
T ss_pred             HHH
Confidence            443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.17  E-value=1.4e-08  Score=102.62  Aligned_cols=152  Identities=13%  Similarity=0.077  Sum_probs=97.0

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHH-HHHhhhHHHHhhhcccchHHHHHHHH-HHHHH--hhhcCCC
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGT-VLMLPLAIQYLVDTIIGNYWMLLVSS-LAYSA--VSYEYKP   78 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~-~y~~~~~GG~laD~~lGr~~~i~~g~-~~~~~--~~~~~~~   78 (427)
                      .-+++..... .+..|+++++|.+.++.+.+.+..... ..+.+++||+ +||+ ||||.+++++ ++..+  .+.... 
T Consensus        26 ~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-  102 (393)
T PRK15011         26 LTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLFAWN-  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHHHHh-
Confidence            3445555666 799999999999999999988766554 4466777777 9996 8888765443 33323  111111 


Q ss_pred             CCCCCchhHHHH-HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHH-HHHH---HHHHHHHHHHHhhhhceec
Q 037418           79 ECIGEGQKILFY-TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKL-FFFS---FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        79 ~~~~~~~~~~~~-~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~-~~f~---Y~~iNiG~~i~~~~~~~l~  153 (427)
                           .+.+.++ .++.+-+.+ +...|...++..|..++++         ++ ..++   ..+.++|.++++.+++++.
T Consensus       103 -----~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~  167 (393)
T PRK15011        103 -----RNYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG---------REAVMFSSFLRAQVSLAWVIGPPLAYALA  167 (393)
T ss_pred             -----hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc---------chHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                 2333333 333333343 3556667777766443221         22 2232   4678999999999998885


Q ss_pred             ---cchhHhHHHHHHHHHHHHHH
Q 037418          154 ---PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       154 ---g~~~~F~i~~v~~~i~~iif  173 (427)
                         ||+..|.+.++..++..+..
T Consensus       168 ~~~gw~~~f~~~~~~~~~~~~~~  190 (393)
T PRK15011        168 MGFSFTVMYLSAAVAFIVCGVMV  190 (393)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHH
Confidence               99999998877655554443

>TIGR00896 CynX cyanate transporter

Probab=99.16  E-value=5.9e-09  Score=103.46  Aligned_cols=139  Identities=12%  Similarity=0.118  Sum_probs=105.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      .+...+.+++|++.++++.+.+.+.....+..++.|+++||+ ||||++.++.++..+ .+...      ..+.+.+.++
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~------~~~~~~l~~~   93 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIRS------APGTALLFAG   93 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHHH------hccHHHHHHH
Confidence            455677889999999999999999999999999999999995 999999998877665 21112      2345667788


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec-----cchhHhHHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK-----PWKIRFGIPAIF  165 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~-----g~~~~F~i~~v~  165 (427)
                      ..+.++|.|...+..++...|.++++          +.+..+  ..+.++|..+++.+.+.+.     +|+..|.+.++.
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~  163 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFPQR----------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALP  163 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCcch----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            88999999998888888887766431          233333  5677888888887776654     388888766554


Q ss_pred             HHHH
Q 037418          166 TVVA  169 (427)
Q Consensus       166 ~~i~  169 (427)
                      .+++
T Consensus       164 ~~~~  167 (355)
T TIGR00896       164 ALLA  167 (355)
T ss_pred             HHHH
Confidence            4443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00898 2A0119 cation transport protein

Probab=99.15  E-value=6.5e-09  Score=108.30  Aligned_cols=139  Identities=16%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             hhHhcCCc---hHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCCCCCCCCchhHHHHHHH
Q 037418           19 LTNVWKIS---LVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        19 l~~~l~~~---~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l   93 (427)
                      +.++++++   ..+++.+.+++.....++.++.|+++|| +|||++++++.++..+..  ...      ..+.+.+++..
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~r  187 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAF------SPNYTVFLVFR  187 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHH------cccHHHHHHHH
Confidence            34567888   8899999999999999999999999999 599999999988877622  212      23567788899


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceeccchhHhHHHHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATL  171 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~g~~~~F~i~~v~~~i~~i  171 (427)
                      .+.++|.|+..+...+++.|.++++.         |.....  ..+.++|.++++.++.++.+|++.|.+.++..++..+
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~  258 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQ---------RAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFL  258 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhh---------hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999886543         222222  5677888888888776666899999888776665554


Q ss_pred             HH
Q 037418          172 VF  173 (427)
Q Consensus       172 if  173 (427)
                      ..
T Consensus       259 ~~  260 (505)
T TIGR00898       259 LS  260 (505)
T ss_pred             HH
Confidence            44

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.14  E-value=1.8e-08  Score=101.11  Aligned_cols=135  Identities=10%  Similarity=0.041  Sum_probs=103.7

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCC
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIG   82 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~   82 (427)
                      ...+++..+. .+..|+. ++|.|..+++.+.+.+.....+.+++.|+++||+ ||||.+..+.++..+......    .
T Consensus        17 ~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~----~   90 (381)
T PRK03633         17 LLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLG----L   90 (381)
T ss_pred             HHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----H
Confidence            4555666666 6666665 6899999999999999999999999999999995 999999999888776222111    0


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ..+.+.++++..+.++|.|...|...+...|..++++         +.+.++  ..+.|+|..+|+.+.+++.
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN---------RGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2356778888899999999998888777777665432         334444  6788999999999988876

>PRK10133 L-fucose transporter; Provisional

Probab=99.14  E-value=1.1e-08  Score=105.08  Aligned_cols=138  Identities=14%  Similarity=0.131  Sum_probs=97.0

Q ss_pred             hhHHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCC
Q 037418            3 WADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIG   82 (427)
Q Consensus         3 ~~eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~   82 (427)
                      +.--++.-....+...+++.+|.++.+++.+...+.....++.++.|.++||+ ||||++.++..++.+......+ +..
T Consensus        36 ~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~-~~~  113 (438)
T PRK10133         36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWP-AAE  113 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            33334433333455667889999999999999999999999999999999996 9999999999988872211100 000


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAF  149 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~  149 (427)
                      ..+.+.+++++.+.++|.|...+..+++++|..++ +.     +..+.+.++ ....+|..+|+.++
T Consensus       114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-~~-----~~~~~s~~~-~~~~~G~~~g~~~g  173 (438)
T PRK10133        114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SS-----GHFRLNLAQ-TFNSFGAIIAVVFG  173 (438)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-hh-----HHHHHHHHH-HHHHHHHHHHHHHH
Confidence            23567888999999999999999999999975322 21     111233443 44456666665543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.14  E-value=2.8e-08  Score=101.15  Aligned_cols=133  Identities=13%  Similarity=0.195  Sum_probs=100.3

Q ss_pred             hHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHH
Q 037418           11 AMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILF   89 (427)
Q Consensus        11 g~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~   89 (427)
                      ++. .+...+++++|++..+++.+...+.....++.+++|++.||+ ||||++.+|..++.+......+ .....+.+.+
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~-~~~~~~~~~~   97 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWP-AAEIMNYTLF   97 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHH-HHhhccHHHH
Confidence            455 677888899999999999999999999999999999999995 9999999999888772221110 0002356778


Q ss_pred             HHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee
Q 037418           90 YTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        90 ~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l  152 (427)
                      ..+..+.++|.|...+..++++.+..++++..      ++.+.. ....++|..+++.+.+.+
T Consensus        98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        98 LVGLFILTAGLGFLETAANPYILVMGPESTAT------RRLNLA-QSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH------HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999998875443321      122222 567778888887776644

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.13  E-value=1e-08  Score=117.31  Aligned_cols=135  Identities=11%  Similarity=0.038  Sum_probs=95.5

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHH--HHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVR--AAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPECIG   82 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~--A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~~~~   82 (427)
                      ++..++. .+..++...++.+...  ++.+.+++.....++++++|+++||+ |||++++++.++..+. +....  +..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~--~~~   99 (1146)
T PRK08633         23 FNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVL--AYY   99 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            4444445 5666776666665443  57777788888889999999999995 9999999887765541 11000  000


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ..+.+.+++...+.+++.|...|...++++|.+++++         +...++  ..+.++|.++|+.+++++.
T Consensus       100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        100 LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN---------LSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc---------chhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1346778889999999999999999999999887643         333444  5677888888887777653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.12  E-value=2.7e-08  Score=98.86  Aligned_cols=159  Identities=15%  Similarity=0.171  Sum_probs=98.3

Q ss_pred             hhHHHHHHhHHHHHHHhhHhcCC--chHHHHHHHH--HHHHH---HHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--h
Q 037418            3 WADIFAAYAMWVMITYLTNVWKI--SLVRAAAIVN--FFWGT---VLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--S   73 (427)
Q Consensus         3 ~~eRfs~Yg~~~l~~yl~~~l~~--~~~~A~~~~~--~~~~~---~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~   73 (427)
                      ++|-+..+....+..|+.++...  ++++.+.+.+  .+...   ..++.++.|+++||+ ||||++.++.++..+.  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHH
Confidence            34544454444556666666443  3444433333  22221   124678899999995 9999999998888762  2


Q ss_pred             hcCCCCCCC--CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhh
Q 037418           74 YEYKPECIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAF  149 (427)
Q Consensus        74 ~~~~~~~~~--~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~  149 (427)
                      ....+....  ......++++..+.++|.|...+...+++.|.+++++         |.....  ..+.++|.++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK---------RGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc---------chHHHHHHHHHHHHHHHHHHHHH
Confidence            222211100  0112356678889999999999999999999876543         222222  677788888777654


Q ss_pred             cee---------c--cchhHhHHHHHHHHHHHH
Q 037418          150 PYI---------K--PWKIRFGIPAIFTVVATL  171 (427)
Q Consensus       150 ~~l---------~--g~~~~F~i~~v~~~i~~i  171 (427)
                      ..+         +  ||++.|.+.++..+++..
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            432         2  899999887766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.12  E-value=2.2e-08  Score=102.06  Aligned_cols=136  Identities=14%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhc-CCCCCCCCchhHHHHHHHHHHHhhccc
Q 037418           25 ISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYE-YKPECIGEGQKILFYTALGLIAFGMSG  102 (427)
Q Consensus        25 ~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~li~~g~g~  102 (427)
                      .+..+++.+.+.+.....++.++.|+++||+ |||++++++.++..+. +.. ..+   ...+.+.++++..+.++|.|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~  143 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA---FALSVEMLIVGRVLLGIGVGI  143 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhH
Confidence            3489999999999999999999999999995 9999999998887762 111 111   122345788899999999999


Q ss_pred             ccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhh---ceec---cchhHhHHHHHHHHHHHHHH
Q 037418          103 HLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAF---PYIK---PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       103 ~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~---~~l~---g~~~~F~i~~v~~~i~~iif  173 (427)
                      ..+...++++|.+++++         |.....  +.+.++|.++++.+.   ....   ||++.|.+.++..++..+..
T Consensus       144 ~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       144 ASALVPMYLSEIAPKAL---------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHhHHHHHHHccCChhh---------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999886543         233333  678899999999988   5543   99999998766665554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.11  E-value=1.1e-08  Score=105.50  Aligned_cols=140  Identities=13%  Similarity=0.138  Sum_probs=106.2

Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcc
Q 037418           22 VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMS  101 (427)
Q Consensus        22 ~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g  101 (427)
                      +++++..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..+......  .....+.+.+++...+.+++.|
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~~~G~~~~  146 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIP--WAAGGGIALVVFCRVIQGLAQG  146 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHH--HHHHcCchHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999999995 999999999877665211110  0001234567788899999999


Q ss_pred             cccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHHHHHHHHHHH
Q 037418          102 GHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       102 ~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~i~~iif  173 (427)
                      ..-|....+..|.+++++         |.....  +.+.++|.++++.+++++.    ||+..|.+.++..++..+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~  215 (465)
T TIGR00894       147 SVSPATHKIIVKWAPPKE---------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW  215 (465)
T ss_pred             cchhhHHHHHHhcCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence            999999999999876432         333444  6778999999998888764    89999998877655544433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=4.1e-08  Score=98.50  Aligned_cols=147  Identities=16%  Similarity=0.070  Sum_probs=104.2

Q ss_pred             HHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh-hcCCCCCCCCchh
Q 037418            8 AAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS-YEYKPECIGEGQK   86 (427)
Q Consensus         8 s~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~-~~~~~~~~~~~~~   86 (427)
                      +++........+.+++|.+.++.+.+.+.+.....++.+.+|+++||+ |||+++..+........ ....     ..+.
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~-----~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLD-----PFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHH-----hccH
Confidence            445555334556678999999999999999988889999999999996 98887655444333321 1111     1356


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHH
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGI  161 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i  161 (427)
                      ..+.++..+.++|.|.. ++..+..+|.+++++         |.+..+  ..+.++|..+++.+++++.   ||+..|.+
T Consensus        80 ~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~---------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        80 EWLLACQLLAALGQPFL-LNAFAPAASQIREER---------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             HHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            77888999999999864 444455577665421         344444  6888999999999988885   99999987


Q ss_pred             HHHHHHHHH
Q 037418          162 PAIFTVVAT  170 (427)
Q Consensus       162 ~~v~~~i~~  170 (427)
                      .++.-++..
T Consensus       150 ~~~l~~~~~  158 (368)
T TIGR00903       150 IAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHH
Confidence            555443333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.11  E-value=8.6e-09  Score=117.94  Aligned_cols=125  Identities=13%  Similarity=0.072  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHH---H-hhhcCCCCCCCCchhHHHHHHHHHHHhhcccccc
Q 037418           30 AAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYS---A-VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLV  105 (427)
Q Consensus        30 A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~  105 (427)
                      .+...+++.....++.+++|+++||+ ||||++........   + .+....     ..+.+.++++..+.+++.+++.|
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~l~~~~~l~gi~~a~~~p  127 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-----LNSVPLLFAALFLMGIHSALFGP  127 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhhch
Confidence            45555667677778889999999996 99997643222111   1 111111     13577888999999999999999


Q ss_pred             cccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHH
Q 037418          106 SIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVA  169 (427)
Q Consensus       106 ~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~  169 (427)
                      ...+++.|.+++++         +....+  .++.++|.++|+.+++++.   ||+..|.+.++..+++
T Consensus       128 ~~~a~l~~~~~~~~---------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~  187 (1140)
T PRK06814        128 IKYSILPDHLNKDE---------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG  187 (1140)
T ss_pred             HHHHhhHhhcCccc---------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            99999999997653         233444  7899999999999999885   8988884444443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.10  E-value=1.9e-08  Score=104.44  Aligned_cols=146  Identities=14%  Similarity=0.196  Sum_probs=112.0

Q ss_pred             HHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 037418            7 FAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQK   86 (427)
Q Consensus         7 fs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~   86 (427)
                      +.++.+..+..++.+++|.+..+++.+.+.+.....++.+++|+++||+ |||++++++.++..+......    ...+.
T Consensus        34 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~  108 (496)
T PRK03893         34 FDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACG----FAPGY  108 (496)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHH----HHhHH
Confidence            3343333455677788999999999999999998899999999999996 999999999877766222111    02356


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHH
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGI  161 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i  161 (427)
                      +.++++..+.+++.|+..+...+++.|.+++++         +...+.  +.+.++|.++++.+.+++.   ||++.|.+
T Consensus       109 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        109 WTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            778888999999999999999999999886532         233333  6788999999998888765   89999987


Q ss_pred             HHHHH
Q 037418          162 PAIFT  166 (427)
Q Consensus       162 ~~v~~  166 (427)
                      .++..
T Consensus       180 ~~~~~  184 (496)
T PRK03893        180 GILPI  184 (496)
T ss_pred             HHHHH
Confidence            55443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.10  E-value=1.9e-08  Score=105.26  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=119.2

Q ss_pred             hhhHHHHHHhHH---H-HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hhh
Q 037418            2 FWADIFAAYAMW---V-MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VSY   74 (427)
Q Consensus         2 ~~~eRfs~Yg~~---~-l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~~   74 (427)
                      +.++-+|..|..   + +..|++ ++.-|....+.+..+...-..++.+++|.++||+ .|||.++.+.++..+   .+.
T Consensus        16 w~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~   93 (524)
T PF05977_consen   16 WIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLA   93 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHH
Confidence            455666666665   2 444444 5677777788877777778889999999999996 999999999887765   122


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           75 EYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      .+.  .....+.+.+++...+++++.++..|.-.+.+.+..++++         +.+..+  -...|+.-.+||.+++.+
T Consensus        94 ~l~--~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~---------L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen   94 VLA--FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED---------LPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh---------HHHHHHHHHHHHHHHHhccchHHHHH
Confidence            111  0113467788888899999999999999999999887654         333333  677888888998888876


Q ss_pred             c---cchhHhHHHHHHHHHHHHHHHh
Q 037418          153 K---PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       153 ~---g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      -   |-.+.|.+.+++.++++..+..
T Consensus       163 va~~G~~~~f~inalsfl~~i~~l~~  188 (524)
T PF05977_consen  163 VAFFGAAAAFLINALSFLISILALLR  188 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   8888999999888776655443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.10  E-value=4.2e-11  Score=119.37  Aligned_cols=140  Identities=14%  Similarity=0.223  Sum_probs=116.6

Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcc
Q 037418           22 VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMS  101 (427)
Q Consensus        22 ~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g  101 (427)
                      .+|.++.+.+.+-.+|.....++.++.|++|||| .|++.+.+|..+-.+...+..    ...+.|.+.+...++++|-+
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~----fs~~Fwq~~l~R~~vGiGeA  136 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASG----FSNHFWQVLLCRGFVGIGEA  136 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccchh
Confidence            4799999999999999999999999999999998 999999999877766222111    02468889999999999999


Q ss_pred             cccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHHHHHHHHH-HHH
Q 037418          102 GHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTVVATL-VFL  174 (427)
Q Consensus       102 ~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~i~~i-if~  174 (427)
                      ...|...++++|.++++.         |.+.|.  |+++++|+.+|...+.++.    .|+++|...++.+++..+ +++
T Consensus       137 s~~~ia~s~IaD~f~~~~---------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  137 SYSPIAPSLIADSFPDDK---------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFL  207 (493)
T ss_pred             hhcccchhHhhhcCcchh---------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHh
Confidence            999999999999998754         566776  9999999999999988887    499999988777765554 444


Q ss_pred             h
Q 037418          175 S  175 (427)
Q Consensus       175 ~  175 (427)
                      +
T Consensus       208 f  208 (493)
T KOG1330|consen  208 F  208 (493)
T ss_pred             h
Confidence            3

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.09  E-value=1.8e-08  Score=101.86  Aligned_cols=137  Identities=16%  Similarity=0.107  Sum_probs=103.2

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ..-+.+++|.|+.+++.+.+.+....-++.++.|+++||+ ||||++..+..+..+.  +....      .+.+.++++.
T Consensus        32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a------~~~~~ll~~r  104 (393)
T PRK09705         32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY------PQSALLLSSA  104 (393)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC------cchHHHHHHH
Confidence            3456678999999999999999999999999999999995 9999999999998872  22222      3566778899


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTV  167 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~  167 (427)
                      .+.++|.|...+.....+.|.++++          +.....  ..+.++|..+++.+.+++.    +|+..|.+-++..+
T Consensus       105 ~l~Gig~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~  174 (393)
T PRK09705        105 LLGGVGIGIIQAVMPSVIKRRFQQR----------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV  174 (393)
T ss_pred             HHHHhHHHHHhhhhhHHHHHHcccc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999988877522          122222  3456777777777766653    78887765444433


Q ss_pred             HH
Q 037418          168 VA  169 (427)
Q Consensus       168 i~  169 (427)
                      +.
T Consensus       175 ~~  176 (393)
T PRK09705        175 VA  176 (393)
T ss_pred             HH
Confidence            33

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.07  E-value=4.7e-08  Score=99.46  Aligned_cols=144  Identities=11%  Similarity=0.116  Sum_probs=110.4

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-h-hcCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-S-YEYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~   91 (427)
                      ....++.+++|++..+.+.+.+++....-++.+++|+++||+ ||||++..+.++..+. + ...      ..+.+.+++
T Consensus        29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~------~~~~~~l~~  101 (412)
T TIGR02332        29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMF------ATGPESLYL  101 (412)
T ss_pred             HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH------hcCHHHHHH
Confidence            355678899999999999999999999999999999999995 9999999998887762 2 112      234667888


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee-------c--cchhHhH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI-------K--PWKIRFG  160 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l-------~--g~~~~F~  160 (427)
                      +..+.++|.|..-|...++..|.+++++         |.....  ..+.++|..+++.+++++       +  ||++.|.
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~---------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~  172 (412)
T TIGR02332       102 LRILVGIAEAGFLPGILLYLTFWFPAYF---------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL  172 (412)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence            9999999999999988888888876532         222333  457778888887776654       2  9999999


Q ss_pred             HHHHHHHHHHHHH
Q 037418          161 IPAIFTVVATLVF  173 (427)
Q Consensus       161 i~~v~~~i~~iif  173 (427)
                      +.++..++..++.
T Consensus       173 ~~~~~~l~~~~~~  185 (412)
T TIGR02332       173 LEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776655444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.06  E-value=3.6e-08  Score=102.32  Aligned_cols=154  Identities=10%  Similarity=0.097  Sum_probs=101.1

Q ss_pred             hHHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCC
Q 037418            4 ADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         4 ~eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~   83 (427)
                      ..-++.++...+..++.+++|++..+++.+...+.....++.+++|+++||+ |||+++..+.++..+.......    .
T Consensus        47 ~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~----~  121 (476)
T PLN00028         47 TCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSL----V  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHH----h
Confidence            3334444444555678889999999999888777777778889999999995 9999999888777662211110    1


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee---------
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI---------  152 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l---------  152 (427)
                      .+.+.+++...+.++|.+..-+ ....+++.++++.         |.....  +...|+|..+++.+.+.+         
T Consensus       122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~---------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI---------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh---------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2455666777778888776543 3456677775432         223333  344566766665444332         


Q ss_pred             ---ccchhHhHHHHHHHHHHHHH
Q 037418          153 ---KPWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       153 ---~g~~~~F~i~~v~~~i~~ii  172 (427)
                         .||++.|.+.++..++..+.
T Consensus       192 ~~~~gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        192 PSFTAWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHH
Confidence               17999999887766554433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.05  E-value=8.8e-08  Score=103.85  Aligned_cols=144  Identities=14%  Similarity=0.080  Sum_probs=105.7

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~   91 (427)
                      .+..++.+++|.+..+++.+.+++.....++.+++|+++||+ |||++++++.++..+.  +..+      ..+.+.+++
T Consensus       188 ~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~af------a~s~~~llv  260 (742)
T TIGR01299       188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSF------VQGYGFFLF  260 (742)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH------HhhHHHHHH
Confidence            455667778999999999999999999999999999999995 9999999998777662  2112      134677888


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee--------------c--
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI--------------K--  153 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l--------------~--  153 (427)
                      +..+.++|.|+..|...++++|.++++.         |...+.  .....+|.++++.++..+              .  
T Consensus       261 ~R~l~G~g~g~~~p~~~~~isE~~p~~~---------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~  331 (742)
T TIGR01299       261 CRLLSGFGIGGAIPIVFSYFAEFLAQEK---------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFH  331 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccc
Confidence            9999999999999999999999876532         222333  345566666665432111              1  


Q ss_pred             cchhHhHHHHHHHHHHHHHH
Q 037418          154 PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif  173 (427)
                      +|++.|.++++..+++++.+
T Consensus       332 gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       332 SWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            78888888777666555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.05  E-value=5.9e-08  Score=100.12  Aligned_cols=161  Identities=16%  Similarity=0.098  Sum_probs=113.2

Q ss_pred             HhHH--HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhc---ccchHHHHHHHHHH-HHHhhhcC--CCCC-
Q 037418           10 YAMW--VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDT---IIGNYWMLLVSSLA-YSAVSYEY--KPEC-   80 (427)
Q Consensus        10 Yg~~--~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~---~lGr~~~i~~g~~~-~~~~~~~~--~~~~-   80 (427)
                      |+.+  .+..|+ +.+|.+...++.+..+......+..++.|+++||   .+||||..+++..+ ..+.+..+  .++. 
T Consensus        20 ~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~   98 (477)
T TIGR01301        20 WALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG   98 (477)
T ss_pred             HHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            4454  566665 6799999999999999999999999999999996   57999998876433 33321111  1100 


Q ss_pred             -------CCC---chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhh
Q 037418           81 -------IGE---GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIA  148 (427)
Q Consensus        81 -------~~~---~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~  148 (427)
                             +..   ...+.+.+++.+.-++.....+...++++|..++++.+       .+..+.  .+..|+|..+|+.+
T Consensus        99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~-------~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR-------TRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence                   000   11134456677777888888888899999999876432       123333  67889999999887


Q ss_pred             hcee--------------c----cchhHhHHHHHHHHHHHHHHHhccc
Q 037418          149 FPYI--------------K----PWKIRFGIPAIFTVVATLVFLSGTC  178 (427)
Q Consensus       149 ~~~l--------------~----g~~~~F~i~~v~~~i~~iif~~~~~  178 (427)
                      +++.              +    +++..|.++++.++++.++-+..-|
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~  219 (477)
T TIGR01301       172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK  219 (477)
T ss_pred             HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            7653              0    5678899999998888877665433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.05  E-value=2.8e-08  Score=102.54  Aligned_cols=145  Identities=11%  Similarity=0.051  Sum_probs=100.8

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHH-HH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTA-LG   94 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~   94 (427)
                      ...+.+++|.+..+++.+.+.+....++..+++|+++||+ |||++++.+.++..+......    ...+.+.++.. ..
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~  116 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILAS----FSSNVIELYLTAGF  116 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHH----HhhhHHHHHHHHHH
Confidence            3445578999999999999999888888899999999995 999999988877665211111    01234444433 35


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVA  169 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~  169 (427)
                      +.++|.|..-+...+.+.+.+++    +      |.....  +.+.++|..+++.+.+++.   ||++.|.+.++..+++
T Consensus       117 l~G~~~~~~~~~~~~~~~~~~~~----~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~  186 (455)
T TIGR00892       117 ITGLGLAFNFQPSLTMLGKYFYR----R------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC  186 (455)
T ss_pred             HHHhcchhhhhHHHHHHHHHHHh----h------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            66888887544445666676521    1      223333  6788888888888777665   9999999988877666


Q ss_pred             HHHHHh
Q 037418          170 TLVFLS  175 (427)
Q Consensus       170 ~iif~~  175 (427)
                      .+..++
T Consensus       187 ~v~~~~  192 (455)
T TIGR00892       187 CVCGAL  192 (455)
T ss_pred             HHHHHH
Confidence            554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.04  E-value=6.3e-08  Score=99.99  Aligned_cols=141  Identities=9%  Similarity=0.024  Sum_probs=102.4

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-h-hcC---C--CCC-CCCchhHHHHHHHH
Q 037418           23 WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-S-YEY---K--PEC-IGEGQKILFYTALG   94 (427)
Q Consensus        23 l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~-~~~---~--~~~-~~~~~~~~~~~~l~   94 (427)
                      ++.+..+++.+.+.+.....++++++|+++||+ ||||+++++..++.+. + ...   .  +.. .+....+.++++..
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~  128 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI  128 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence            488999999999999999999999999999995 9999999998887661 1 111   0  000 01122456678999


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce---------ec--cchhHhHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY---------IK--PWKIRFGI  161 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~---------l~--g~~~~F~i  161 (427)
                      +.++|.|+.-|...++++|.+++++         |.....  -.+..+|.++++.++..         ++  ||++.|.+
T Consensus       129 l~G~~~g~~~~~~~~~i~e~~~~~~---------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~  199 (479)
T PRK10077        129 IGGIGVGLASMLSPMYIAEIAPAHI---------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFAS  199 (479)
T ss_pred             HHhhhHhHHhhHHHHHHHhhCChhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHH
Confidence            9999999999999999999987542         222333  45667777776655432         22  89999998


Q ss_pred             HHHHHHHHHHHH
Q 037418          162 PAIFTVVATLVF  173 (427)
Q Consensus       162 ~~v~~~i~~iif  173 (427)
                      .++..++..+..
T Consensus       200 ~~~~~~~~~~~~  211 (479)
T PRK10077        200 EAIPALLFLMLL  211 (479)
T ss_pred             HHHHHHHHHHHH
Confidence            877766655433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.03  E-value=6.2e-08  Score=98.86  Aligned_cols=152  Identities=9%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             HHHhHH--HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCC
Q 037418            8 AAYAMW--VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGE   83 (427)
Q Consensus         8 s~Yg~~--~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~   83 (427)
                      .-||+.  .+..|+++++|++..+.+.+.+.+.....++++++|.++||+-|||+++.++.++..+.  +...      .
T Consensus        16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~------~   89 (418)
T TIGR00889        16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ------V   89 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH------h
Confidence            334555  68999999999999999999999999999999999999999645577877777666442  2112      1


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec-cc-hhHhHH
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK-PW-KIRFGI  161 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~-g~-~~~F~i  161 (427)
                      .+.+.+++.+.+.+++.+...|-..++..+...+...+. .+.-.+.+.+    -++|.++|+.+++.++ .+ +..|.+
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~r~~----G~lG~~ig~~l~g~l~~~~~~~~f~~  164 (418)
T TIGR00889        90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDV-VTDFPPIRVM----GTIGFIAAMWAVSLLDIELSNIQLYI  164 (418)
T ss_pred             cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCc-hhcCCCeeee----hhHHHHHHHHHHHHhcccchhHHHHH
Confidence            234555556666666666555555444322221110000 0000012222    2467778877777665 22 344666


Q ss_pred             HHHHHHHHH
Q 037418          162 PAIFTVVAT  170 (427)
Q Consensus       162 ~~v~~~i~~  170 (427)
                      .++..++..
T Consensus       165 ~~~~~~~~~  173 (418)
T TIGR00889       165 TAGSSALLG  173 (418)
T ss_pred             HHHHHHHHH
Confidence            555555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.02  E-value=5.9e-08  Score=99.40  Aligned_cols=140  Identities=10%  Similarity=0.059  Sum_probs=106.8

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLI   96 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li   96 (427)
                      ..+.+++|++..+++.+.+.+.....++.+++|+++||+ |||+.+.++.++..+......    ...+.+.+++...+.
T Consensus        47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~l~  121 (434)
T PRK11663         47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFG----FSSSLWAFALLWVLN  121 (434)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHH
Confidence            344457999999999999999999999999999999996 999999999888776222111    023456666677778


Q ss_pred             HhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHH
Q 037418           97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~  170 (427)
                      +++.|...+...+.+.|.+++++         +.....  +.+.++|..+++.+.+++.   ||++.|.+.++..++..
T Consensus       122 g~~~g~~~~~~~~~~~~~~~~~~---------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        122 AFFQGWGWPVCAKLLTAWYSRTE---------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHccchHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            88888888889999999886532         233433  6778899999988877765   99999998776554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.97  E-value=2.7e-07  Score=95.00  Aligned_cols=144  Identities=13%  Similarity=0.088  Sum_probs=102.8

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhh--cCCCCCCCCchhHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSY--EYKPECIGEGQKILFYTA   92 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~   92 (427)
                      ...|+.++ |.+..+.+.+.+.+.....++.+++|+++||+ |||++++++.++..+...  .+.+.  ...+.+.+++.
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~  126 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVMFVL  126 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHH
Confidence            44677777 99999999999999999999999999999996 999999999887766211  11110  01245566777


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHH-HHHhhhhcee--c-cchhHhHHHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVP-IIALIAFPYI--K-PWKIRFGIPAIFT  166 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~-~i~~~~~~~l--~-g~~~~F~i~~v~~  166 (427)
                      ..+.+++.|...|.......|.+++++         +....+  +.+.++|. +++++....+  . ||+++|.+.++..
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~  197 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA  197 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHH---------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            888899999988888888888775432         233444  57778775 4455432222  2 9999999877666


Q ss_pred             HHHHH
Q 037418          167 VVATL  171 (427)
Q Consensus       167 ~i~~i  171 (427)
                      ++..+
T Consensus       198 ~~~~~  202 (452)
T PRK11273        198 ILVAL  202 (452)
T ss_pred             HHHHH
Confidence            55433

>TIGR00897 2A0118 polyol permease family

Probab=98.95  E-value=8e-07  Score=89.99  Aligned_cols=133  Identities=8%  Similarity=0.028  Sum_probs=93.6

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-h--hcCCCCCCCCchhHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-S--YEYKPECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~   90 (427)
                      .+..|+ +++|.+..+++.+.+.+.....++.++.|.++||+ ||||.+..+..+..+. +  ..... .  ..+.+.++
T Consensus        35 ~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~  109 (402)
T TIGR00897        35 WLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWCVGHAAFIVFGL-G--HANYPLIL  109 (402)
T ss_pred             hHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhc-c--CccHHHHH
Confidence            466677 56899999999999999999999999999999995 9999999998887662 1  11110 0  12455666


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHH-HHHhhhhceec---cchhHhH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVP-IIALIAFPYIK---PWKIRFG  160 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~-~i~~~~~~~l~---g~~~~F~  160 (427)
                      +...+.++|.+..-+...+.+.+.+++++         +.+..+  ..+.++|. .+++.+.+++.   ||+..+.
T Consensus       110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~  176 (402)
T TIGR00897       110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDN---------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW  176 (402)
T ss_pred             HHHHHHHcchHHHHhHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            67777888888877777777777665432         233333  56778886 56777776654   6544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09669 putative symporter YagG; Provisional

Probab=98.95  E-value=1.3e-07  Score=97.09  Aligned_cols=149  Identities=13%  Similarity=0.142  Sum_probs=92.9

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc---cchHHHHH-HHHHHHHHhh-hcC-CCCCCCCchhH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI---IGNYWMLL-VSSLAYSAVS-YEY-KPECIGEGQKI   87 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~---lGr~~~i~-~g~~~~~~~~-~~~-~~~~~~~~~~~   87 (427)
                      -+..|+++.+|++.+.++.+..+...+.-+..++.|+++||.   +||||..+ ++.+...+.. ... .|........+
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            467888999999999999999999999999999999999993   58866644 5555554411 111 12111122233


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhc----eec------cc
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFP----YIK------PW  155 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~----~l~------g~  155 (427)
                      .+++...+..++..++.....++.+|..++  ++|      |.+..+  ....|+|..+++.+..    ++.      ||
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~e------R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~  182 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITND--PRE------RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGY  182 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence            344444455666667777778899886544  333      333333  5566777666654322    221      56


Q ss_pred             hhHhHHHHHHHHHHH
Q 037418          156 KIRFGIPAIFTVVAT  170 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~  170 (427)
                      +..+.+.++...+..
T Consensus       183 ~~~~~i~~ii~~v~~  197 (444)
T PRK09669        183 FYAMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666655555544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.93  E-value=7.4e-08  Score=99.63  Aligned_cols=143  Identities=13%  Similarity=-0.092  Sum_probs=103.6

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh---hhcCCCCCCCCchhHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV---SYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~   92 (427)
                      ...+.+++|.+.++.+.+.+.+....-++.+++|+++||+ ||||.+.++.++..+.   +..+.  +....+.+.+++.
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~  128 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASL--GSGSVSLGLMIAL  128 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHH
Confidence            4556778999999999999999888889999999999996 9999998887665541   11110  1112456778888


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec------cchhHhHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK------PWKIRFGIPAI  164 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~------g~~~~F~i~~v  164 (427)
                      ..+.++|.|..-|...+.++|.+++++         |.....  -.+.++|..+++.+..++.      +|+..|.+.++
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~---------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~  199 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRK---------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI  199 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccc---------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence            889999999999999999999887643         222333  3567788877766654332      57778887665


Q ss_pred             HHHHHH
Q 037418          165 FTVVAT  170 (427)
Q Consensus       165 ~~~i~~  170 (427)
                      ..++..
T Consensus       200 ~~~~~~  205 (467)
T PRK09556        200 IALIIG  205 (467)
T ss_pred             HHHHHH
Confidence            554433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.92  E-value=5.1e-08  Score=104.34  Aligned_cols=312  Identities=10%  Similarity=-0.116  Sum_probs=227.0

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCC-CCCCC---CchhHHHHHHHHHHHh
Q 037418           23 WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYK-PECIG---EGQKILFYTALGLIAF   98 (427)
Q Consensus        23 l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~-~~~~~---~~~~~~~~~~l~li~~   98 (427)
                      .+.....++...+++..+.+++++.+.+.||-..|+..+...-.+.+++...+.. .....   ..+.......+..+++
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL   94 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL   94 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH
Confidence            3445567888999999999999999999999999999999988888887776554 11100   0112234568888999


Q ss_pred             hcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHH-HHHHHhhhhceeccchh-----------HhHHHHHHH
Q 037418           99 GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVL-VPIIALIAFPYIKPWKI-----------RFGIPAIFT  166 (427)
Q Consensus        99 g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNi-G~~i~~~~~~~l~g~~~-----------~F~i~~v~~  166 (427)
                      +.++.+++.+++.++|.+..++      +++++.++++.... +.-+|.+++..+.+|-.           -++..++.+
T Consensus        95 ia~G~GgiKp~vsaf~gdqf~~------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        95 IALGTGGIKPCVSAFGGDQFEE------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHhhccccccCchhhhHhhcCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            9999999999999999877653      24345555777643 33345566665556654           123667777


Q ss_pred             HHHHHHHHhcccceeecCCCCChhHHHHHHHHHHHhhccCCCCCCCccccccCCcccccccccCCCcchhhhhhccCCCc
Q 037418          167 VVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDK  246 (427)
Q Consensus       167 ~i~~iif~~~~~~~~~~~p~g~pl~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~  246 (427)
                      ++.++.++.....++..++.+.+...+.++.+.....++.+                   ...      .+..       
T Consensus       169 i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~-------------------~~~------~~~~-------  216 (654)
T TIGR00926       169 ILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR-------------------FST------RSEH-------  216 (654)
T ss_pred             HHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh-------------------hcc------CCcc-------
Confidence            88888888887766666666555445555554444332110                   000      0000       


Q ss_pred             cchhccCCcccc--cchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHHHhcCCCCCceecccchhhhhhHHHH
Q 037418          247 TLEQQEGNRWRL--CRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNRKVGKLSVPLPILLLFYDIART  324 (427)
Q Consensus       247 ~~~~~~~~~~~~--~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~~d~~~~~~~ip~~~~~~~n~i~ii  324 (427)
                           ....|..  ....++++++...++++++...+.+|+.+.|....++.|+.++|+..+.+...+...+.++++-.+
T Consensus       217 -----~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L  291 (654)
T TIGR00926       217 -----WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPL  291 (654)
T ss_pred             -----cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHH
Confidence                 0011211  123345678999999999999999999999999999999999999877777777788899999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037418          325 QFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIR  377 (427)
Q Consensus       325 ~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~  377 (427)
                      .++|+...+-+++..++++.-.+++++.-+.+.++++++.+++.+..+.+.-+
T Consensus       292 ~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~  344 (654)
T TIGR00926       292 LILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNP  344 (654)
T ss_pred             HHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999996666678899999999999999999999987766544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.91  E-value=2.8e-07  Score=95.59  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhc---ccchHHH-HHHHHHHHHHhhh-cCCCC-CCCCchhH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDT---IIGNYWM-LLVSSLAYSAVSY-EYKPE-CIGEGQKI   87 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~---~lGr~~~-i~~g~~~~~~~~~-~~~~~-~~~~~~~~   87 (427)
                      -+..|+++.+|++...++.+..+...+.-+..++.|+++||   .+||||. +++|.+.+.+... ...++ ........
T Consensus        28 ~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~  107 (473)
T PRK10429         28 YLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYV  107 (473)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHH
Confidence            57899999999999999999999999999999999999994   2598554 4556655555221 12211 11111233


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhh
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIA  148 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~  148 (427)
                      .+.+...+..++..++.....++++|.-++  ++|      |.+.++  ....|+|.++...+
T Consensus       108 ~~~~~~~l~~~~~t~~~ip~~al~~~lt~~--~~e------R~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        108 FVCVTYILWGMTYTIMDIPFWSLVPTLTLD--KRE------REQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHHHcchHHhhhHHhCCC--HHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            333445566778888888889999886544  333      344444  45567775554433

>PRK09952 shikimate transporter; Provisional

Probab=98.91  E-value=1.6e-06  Score=88.96  Aligned_cols=117  Identities=12%  Similarity=0.143  Sum_probs=76.7

Q ss_pred             HhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCC--CchhHHHHHHHHHHHhhcccccccccchhcccCCcc
Q 037418           43 MLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDS  118 (427)
Q Consensus        43 ~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~--~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~  118 (427)
                      +..++.|+++||+ |||+++.++.++..+.  +..+.++...  ......+.+...+.++|.|+.-|...+++.|.++++
T Consensus        79 ~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~  157 (438)
T PRK09952         79 LGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN  157 (438)
T ss_pred             hHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC
Confidence            4556679999995 9999999998888772  2222221100  001224667889999999999999999999987653


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee----------c-cchhHhHHHHHHHH
Q 037418          119 RAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI----------K-PWKIRFGIPAIFTV  167 (427)
Q Consensus       119 ~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l----------~-g~~~~F~i~~v~~~  167 (427)
                      +      |....+.. ..+.++|.+++..+..++          . ||+..|.+.++..+
T Consensus       158 ~------rg~~~~~~-~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        158 K------KAFYSSGV-QVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             C------CcHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            2      11111112 567777777765443322          2 89999998776543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.88  E-value=5.6e-07  Score=92.23  Aligned_cols=146  Identities=14%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hh-cCCCCCCCCchhHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SY-EYKPECIGEGQKILFYTA   92 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~   92 (427)
                      ...|+++ +|.+..+.+.+.+.+.....+..+++|+++||+ |||+.+.++.++..+. +. ...+..  ..+...+.+.
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~  124 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA--TSSIAIMFVL  124 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc--cchHHHHHHH
Confidence            3456665 599999999999999999999999999999995 9999999887777662 21 111100  1234556677


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce-ec---cchhHhHHHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY-IK---PWKIRFGIPAIFT  166 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~-l~---g~~~~F~i~~v~~  166 (427)
                      ..+.+++.|...+.....+.|.+++++         |....+  +.+.++|..+++.+.+. +.   ||+.+|.+.++..
T Consensus       125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~---------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~  195 (438)
T TIGR00712       125 LFLNGWFQGMGWPPCGRTMVHWWSQSE---------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICA  195 (438)
T ss_pred             HHHHHHHhhcchHHHHHHHHHhcCccc---------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            888899999988888889999876543         233444  67788888887766553 32   8999999887776


Q ss_pred             HHHHHHH
Q 037418          167 VVATLVF  173 (427)
Q Consensus       167 ~i~~iif  173 (427)
                      ++..++.
T Consensus       196 ~i~~~~~  202 (438)
T TIGR00712       196 IIVALFA  202 (438)
T ss_pred             HHHHHHH
Confidence            6654433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.87  E-value=1.2e-06  Score=91.15  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=93.0

Q ss_pred             hHHHHHHhHHHHHHHhhHhcCCchHHH-HHH-----HHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhc
Q 037418            4 ADIFAAYAMWVMITYLTNVWKISLVRA-AAI-----VNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYE   75 (427)
Q Consensus         4 ~eRfs~Yg~~~l~~yl~~~l~~~~~~A-~~~-----~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~   75 (427)
                      .|-|.+.-+.....++.+.++.+..+. +.+     .++.....-+++++.|+++||+ |||+++.++.+++.+  .+..
T Consensus        27 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a  105 (490)
T PRK10642         27 MEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIG  105 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence            344433333345567777765333221 111     1222233447788999999996 999999999988887  2222


Q ss_pred             CCCCCCC--CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh----
Q 037418           76 YKPECIG--EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAF----  149 (427)
Q Consensus        76 ~~~~~~~--~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~----  149 (427)
                      +.+++..  ......+.+...+.++|.|+..|+..++++|.++++.      |....... ..+.++|..+|..+.    
T Consensus       106 ~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~-~~~~~~G~~lg~~~~~~~~  178 (490)
T PRK10642        106 LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWL-DFGSIAGFVLGAGVVVLIS  178 (490)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            2221100  0011246788999999999999999999999887643      11112222 445566666555333    


Q ss_pred             cee------c-cchhHhHHHHHHHH
Q 037418          150 PYI------K-PWKIRFGIPAIFTV  167 (427)
Q Consensus       150 ~~l------~-g~~~~F~i~~v~~~  167 (427)
                      .++      . ||++.|.+.++..+
T Consensus       179 ~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        179 TIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             HhcCHHHhcCccHHHHHHHHHHHHH
Confidence            222      2 89999998665433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.85  E-value=1.8e-06  Score=88.30  Aligned_cols=143  Identities=14%  Similarity=0.145  Sum_probs=87.2

Q ss_pred             HHHHHhhHhcCCchHHHHHHH-HHHHH-HHH----HhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCC--
Q 037418           14 VMITYLTNVWKISLVRAAAIV-NFFWG-TVL----MLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGE--   83 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~-~~~~~-~~y----~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~--   83 (427)
                      .+..++.++++.++.+.+.+. +.... ..+    ++.++.|+++||+ ||||.++.+.++..+  .+..+.++....  
T Consensus        36 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~  114 (434)
T PRK15075         36 FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVPGYATIGL  114 (434)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            455677778888877754433 22222 223    4578889999995 999999999988776  222222110000  


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee---------c-
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI---------K-  153 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l---------~-  153 (427)
                      .....+.++..+.++|.|..-|+..++.+|.+++++.      ......+ ..+.++|..+++.+++.+         . 
T Consensus       115 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r------g~~~~~~-~~~~~~g~~~g~~~g~~l~~~~~~~~~~~  187 (434)
T PRK15075        115 AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRK------GFYTSWQ-SASQQVAVVFAALLGYLLNQWLSPAQMAE  187 (434)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccc------hHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHhc
Confidence            0012456788899999999999999999998876431      1112222 233444444443333322         2 


Q ss_pred             -cchhHhHHHHH
Q 037418          154 -PWKIRFGIPAI  164 (427)
Q Consensus       154 -g~~~~F~i~~v  164 (427)
                       ||++.|.+.++
T Consensus       188 ~gWr~~f~~~~~  199 (434)
T PRK15075        188 WGWRIPFLIGCL  199 (434)
T ss_pred             cchHHHHHHHHH
Confidence             99999987543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.82  E-value=2e-06  Score=87.06  Aligned_cols=156  Identities=12%  Similarity=0.085  Sum_probs=105.0

Q ss_pred             hhhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc----cchHH-HHHHHHHHHHHhhh-
Q 037418            2 FWADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI----IGNYW-MLLVSSLAYSAVSY-   74 (427)
Q Consensus         2 ~~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~----lGr~~-~i~~g~~~~~~~~~-   74 (427)
                      .++|-..+.=.. .+-.|+++ .|++.++-+.+.....-  ++..++.|+++||+    +|||| .+.++.++..+.+. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            345544444444 78889986 59999999988555444  78999999999996    38876 56666666654211 


Q ss_pred             -cCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce
Q 037418           75 -EYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY  151 (427)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~  151 (427)
                       ...+   ...+.+.+++...+.+...+...|...++..|..++++         |.+...  .++.++|..+++.+..+
T Consensus        85 l~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~---------r~~~~~~~~~g~~~g~i~g~~l~~~  152 (402)
T PRK11902         85 MAFCP---PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE---------RGAGAAVKVLGYRLAMLVSGGLALW  152 (402)
T ss_pred             HHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---------hhHHHHHHHHHHHHHHHHHhHHHHH
Confidence             1211   12345555555566778888999999999999865432         222333  56677888877766555


Q ss_pred             ec----cchhHhHHHHHHHHHHHHH
Q 037418          152 IK----PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       152 l~----g~~~~F~i~~v~~~i~~ii  172 (427)
                      +.    ||+..|.+.++..++..+.
T Consensus       153 l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        153 LADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHH
Confidence            42    8999999877766555443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.78  E-value=6.6e-07  Score=92.27  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=110.9

Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hhhcCCCCCCCCchhHHHHHHHHHHHh
Q 037418           22 VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VSYEYKPECIGEGQKILFYTALGLIAF   98 (427)
Q Consensus        22 ~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~li~~   98 (427)
                      +++++..+-+.+.+.+.....++++.+|+++||+ |-||++.++.++..+   ..|...     ..+.+.+.+...+.++
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa-----~~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAA-----SIGFYLLLVLRFLQGL  140 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH-----HhcchhhHHHHHHhHH
Confidence            5788999999999999999999999999999996 999999999888776   445443     2334467789999999


Q ss_pred             hcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHHHHHHHHHH
Q 037418           99 GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus        99 g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~i~~ii  172 (427)
                      +.|...|++..+.++-.+++   |      |..+..  +.+..+|.+++..+++++-    ||+..|.+.++.-++-.++
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~---E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~  211 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPN---E------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFIL  211 (466)
T ss_pred             HHhHHHhhhhceeeeECCHH---H------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            99999999999999865543   3      455666  7777788888877777765    9999999877776666655


Q ss_pred             HHh
Q 037418          173 FLS  175 (427)
Q Consensus       173 f~~  175 (427)
                      +..
T Consensus       212 w~~  214 (466)
T KOG2532|consen  212 WFL  214 (466)
T ss_pred             HHH
Confidence            544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.78  E-value=3.8e-07  Score=93.19  Aligned_cols=302  Identities=15%  Similarity=0.131  Sum_probs=174.5

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhc---ccchHHHHH-HHHHHHHHhhhcC-CC-CCCC--Cch
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDT---IIGNYWMLL-VSSLAYSAVSYEY-KP-ECIG--EGQ   85 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~---~lGr~~~i~-~g~~~~~~~~~~~-~~-~~~~--~~~   85 (427)
                      -+..|+++.+|.+...++.+..+.....-+..++-|+++||   .+||||-.+ +|.+...+....+ .+ +...  ...
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            56788889999999999999999999999999999999994   358877655 5666666522222 11 1111  112


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee----c------
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI----K------  153 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l----~------  153 (427)
                      ...+.+...+..++...+..+..+++.|..++.++        |.+..+  -.+.++|.++...+.+.+    .      
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~--------R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~  174 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE--------RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSN  174 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhh--------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccch
Confidence            33345666777899999999999999998765442        233333  456667775444444332    2      


Q ss_pred             cchhHhHHHHHHHHHHHHHHHhcccceeecCCCCChhHHHHHHHHHHHhhccCCCCCCCccccccCCcccccccccCCCc
Q 037418          154 PWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSL  233 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  233 (427)
                      ||++.+.+.++..+++.++.....|. ++.++..+              ++      +                     .
T Consensus       175 ~~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~--------------~~------~---------------------~  212 (428)
T PF13347_consen  175 GYRWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ--------------EK------K---------------------I  212 (428)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhheeee-cccccccc--------------cc------c---------------------c
Confidence            46666666665555555555444332 00000000              00      0                     0


Q ss_pred             chhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHHH-hcCCCCCceecc
Q 037418          234 RCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADH-LNRKVGKLSVPL  312 (427)
Q Consensus       234 ~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-~d~~~~~~~ip~  312 (427)
                      ++.+..+.                ++     ++ |.+   ..++....+.+....-..+...+..+. ++.+    +. .
T Consensus       213 ~~~~~~~~----------------~~-----~n-r~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~~-~  262 (428)
T PF13347_consen  213 SLRDSLRS----------------LF-----RN-RPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE----GL-I  262 (428)
T ss_pred             ccccchhh----------------hc-----cc-chH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----hh-h
Confidence            00000000                00     01 111   123334444444444444444444433 3322    11 2


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccch
Q 037418          313 PILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMS  392 (427)
Q Consensus       313 ~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~s  392 (427)
                      +.+..+..+..++..|+..++.+|+.+|        +-+..|.++.+++.+...+...                    -+
T Consensus       263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~--------~~~~~~~~~~~~~~~~~~~~~~--------------------~~  314 (428)
T PF13347_consen  263 SIFMLIFFVASIVGSPLWGRLSKRFGKK--------KVYIIGLLLAALGFLLLFFLGP--------------------GS  314 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccce--------eehhhhHHHHHHHHHHHHHHHh--------------------hh
Confidence            2334456677788889998888887665        3466777777777776655421                    25


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhHHHHHhcCC
Q 037418          393 MFWLLPQFLLLGGFDGVCEVSIACFFIDQFP  423 (427)
Q Consensus       393 ~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP  423 (427)
                      .+|..+..++.|++-....+.......+..+
T Consensus       315 ~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id  345 (428)
T PF13347_consen  315 PWLVLILFILAGIGYGAFFVIPWAMLADVID  345 (428)
T ss_pred             HHHHHHHHHHhHhhhcccccccccccccchh
Confidence            6777788888888887777666655555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.73  E-value=4.1e-06  Score=87.36  Aligned_cols=154  Identities=13%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc----cchHHH-HHHHHHHHHHhh--hc
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI----IGNYWM-LLVSSLAYSAVS--YE   75 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~----lGr~~~-i~~g~~~~~~~~--~~   75 (427)
                      ++-..++-.. .+..|+++ .|.+..+.+.+  ...+..|++.++-|.++||+    +||||. ++++.+...+..  ..
T Consensus        23 ~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~--~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a   99 (491)
T PRK11010         23 ASGLPLALTSGTLQAWMTV-ENIDLKTIGFF--SLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH--HHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            3444444444 66677654 58888888775  33444468899999999995    399986 545555554422  11


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           76 YKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        76 ~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ..++   ..+.+.+.....+.+++.+...+...++..|.+++++         |.+...  -.+.++|.++++.+..++.
T Consensus       100 ~~~~---~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---------rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010        100 FLEP---GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---------RGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HcCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111   2356667777788899999999999999999876432         222222  4667778777776666553


Q ss_pred             ----cchhHhHHHHHHHHHHHHH
Q 037418          154 ----PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       154 ----g~~~~F~i~~v~~~i~~ii  172 (427)
                          ||+..|.+.++.+++..+.
T Consensus       168 ~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        168 DRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             hcccCHHHHHHHHHHHHHHHHHH
Confidence                8999999887776665443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.67  E-value=9.5e-07  Score=87.84  Aligned_cols=153  Identities=12%  Similarity=0.125  Sum_probs=121.1

Q ss_pred             HHHhHH-H---HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCC
Q 037418            8 AAYAMW-V---MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECI   81 (427)
Q Consensus         8 s~Yg~~-~---l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~   81 (427)
                      +||=.| +   ...++.++.++|.+|-+.+.+.+....-++-++.|.++||. +.|+-+-+|.++..+  .+.+.     
T Consensus        40 ~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gf-----  113 (448)
T COG2271          40 AFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGF-----  113 (448)
T ss_pred             HHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhh-----
Confidence            566666 3   45677778899999999999999999999999999999996 999999999988887  23323     


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhh--ceec---c
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAF--PYIK---P  154 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~--~~l~---g  154 (427)
                       +.+.+.+.+-+.+.+.-+|.=.|.....++.-|+.++         |-+..+  -.+.|+|..+.+.++  +++.   +
T Consensus       114 -s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e---------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~  183 (448)
T COG2271         114 -SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE---------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG  183 (448)
T ss_pred             -hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc---------cCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence             2367778888889999999999999999999886543         333333  578999999998888  7666   9


Q ss_pred             chhHhHHHHHHH-HHHHHHHHhc
Q 037418          155 WKIRFGIPAIFT-VVATLVFLSG  176 (427)
Q Consensus       155 ~~~~F~i~~v~~-~i~~iif~~~  176 (427)
                      |+.+|.+|++.. +++++.+..+
T Consensus       184 w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         184 WRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999997665 5555555544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.62  E-value=4.9e-07  Score=91.14  Aligned_cols=157  Identities=12%  Similarity=-0.001  Sum_probs=104.7

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCch
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQ   85 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~   85 (427)
                      ++++++. .+..|+.+ .|.+  +++.....+.....+..++.|+++||+ ||+|.+..+..+..+.......    ..+
T Consensus       230 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~----~~~  301 (399)
T PRK05122        230 IGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWL----APS  301 (399)
T ss_pred             HHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH----hcc
Confidence            4555555 55666654 4553  445555666666677888999999995 9999888887666552211110    123


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhH
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFG  160 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~  160 (427)
                      .+.+.++..+.++|.+...|...+...|..+++.         +.+.+.  +...++|..+++.+.+++.   ||+..|.
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  372 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN---------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFL  372 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            4456677788889998888887777777554322         334444  6678888888877777775   9999999


Q ss_pred             HHHHHHHHHHHHHHhcccce
Q 037418          161 IPAIFTVVATLVFLSGTCSY  180 (427)
Q Consensus       161 i~~v~~~i~~iif~~~~~~~  180 (427)
                      +.++..+++++.....+++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        373 AAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccc
Confidence            88888877776655544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.62  E-value=4.7e-07  Score=89.42  Aligned_cols=142  Identities=12%  Similarity=0.061  Sum_probs=103.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhh--cCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSY--EYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~   91 (427)
                      .+..|. +++|.++.+++.+...+.....+..+++|+++||+ |||+.+.++..+..+...  ...+    ......+..
T Consensus       227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  300 (377)
T TIGR00890       227 LYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIP----MLNDVLFLA  300 (377)
T ss_pred             HHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHcc----cchhHHHHH
Confidence            344454 56899999999988888888899999999999995 999999888777666221  1111    112233444


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFT  166 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~  166 (427)
                      ...+.+++.|...+...++..|.+++++         +.+.+.  +...++|..+++.+.+++.   ||+..|.+.++..
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~  371 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGPAN---------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA  371 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhhhh---------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence            5566777888877777888888876543         233333  6788999999999888775   9999999888777


Q ss_pred             HHHH
Q 037418          167 VVAT  170 (427)
Q Consensus       167 ~i~~  170 (427)
                      ++++
T Consensus       372 ~~~~  375 (377)
T TIGR00890       372 LTSL  375 (377)
T ss_pred             HHhc
Confidence            6654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.61  E-value=7.5e-07  Score=86.81  Aligned_cols=155  Identities=18%  Similarity=0.148  Sum_probs=121.1

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHH-HHHHHHHHHHHhhhcCCCCCCCC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW-MLLVSSLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~-~i~~g~~~~~~~~~~~~~~~~~~   83 (427)
                      -.++.... .+..|+.+.+|.++.+++.+.........+..++.|+++||+ |||+ .+.++..+..+.......    .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~----~  262 (352)
T cd06174         188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLAL----A  262 (352)
T ss_pred             HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHH----h
Confidence            34555555 677777777799999999999999999999999999999995 9999 888888777762221110    1


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhH
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIR  158 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~  158 (427)
                      .+.+..++...+.+++.+...+...++..|..++++         +.+.++  ....++|..+++.+.+++.   ||+..
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~  333 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA---------RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGV  333 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchH
Confidence            235667788899999999999999999999876532         344444  6788999999999988775   99999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 037418          159 FGIPAIFTVVATLVFL  174 (427)
Q Consensus       159 F~i~~v~~~i~~iif~  174 (427)
                      |.+.++..+++.++..
T Consensus       334 ~~~~~~~~~i~~i~~~  349 (352)
T cd06174         334 FLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHhe
Confidence            9998888887776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.61  E-value=9.9e-07  Score=88.89  Aligned_cols=154  Identities=12%  Similarity=-0.028  Sum_probs=86.9

Q ss_pred             HhHH--HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchh
Q 037418           10 YAMW--VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQK   86 (427)
Q Consensus        10 Yg~~--~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~   86 (427)
                      +|..  -+.++|+++.|++.++.+.++++-.....+.+++.|.++||. |.||.+++...+..+ .-|...--+. +.-.
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l~~pff~~v~~-pll~  100 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLLFGPFFIYVFG-PLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHTCHHHHHHTHH-HHHH
T ss_pred             HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            4554  688999999999999999999999999999999999999995 866665544333222 1111100000 0000


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH----HHHHHHHHHHHhhhhceec--cchhHhH
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS----FCGVVLVPIIALIAFPYIK--PWKIRFG  160 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~----Y~~iNiG~~i~~~~~~~l~--g~~~~F~  160 (427)
                      .-++++..+-++..|..-+...+.. |.|.++-+        |+..|.    -+.-.+|.+++..++|++-  +-+..|.
T Consensus       101 ~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s--------r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fw  171 (412)
T PF01306_consen  101 SNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS--------RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFW  171 (412)
T ss_dssp             TT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH--------HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHH--------HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHH
Confidence            1123344443444444444433433 55544322        333333    4556778888888888776  5667787


Q ss_pred             HHHHHHHHHHHHHH
Q 037418          161 IPAIFTVVATLVFL  174 (427)
Q Consensus       161 i~~v~~~i~~iif~  174 (427)
                      ++.+..++..++.+
T Consensus       172 i~s~~~~il~lll~  185 (412)
T PF01306_consen  172 IASAAAIILLLLLL  185 (412)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            76554444443333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK03699 putative transporter; Provisional

Probab=98.60  E-value=3.5e-07  Score=92.34  Aligned_cols=153  Identities=14%  Similarity=0.115  Sum_probs=108.6

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      -++++++. -+..|+++.+|++..+++.+...+.....+..+++|+++||+ ||||.+..+..+..+.+..+..    ..
T Consensus       218 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~----~~  292 (394)
T PRK03699        218 ILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVN----TD  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHH----cC
Confidence            34566777 688899999999999999999998888899999999999995 9999888776655542211110    11


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHH
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGI  161 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i  161 (427)
                      +.+.......+.+++.+..-|...+...++.++++++       ..+.. +.+.++|..+++.+.+++.   |++..|.+
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~-~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~  364 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPK-------LVNFI-LTCGTIGTMLTFVVTSPIVAHFGLQAALLT  364 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-------HHHHH-HHhhhHHHHHHHHHHHHHHHHhCchhhhhh
Confidence            2333444556677777777788888887776543321       12222 6677899999999998886   88888876


Q ss_pred             HHHHHHHHHH
Q 037418          162 PAIFTVVATL  171 (427)
Q Consensus       162 ~~v~~~i~~i  171 (427)
                      .++.++++.+
T Consensus       365 ~~~~~~~~~~  374 (394)
T PRK03699        365 ANGLYAVVFV  374 (394)
T ss_pred             hHHHHHHHHH
Confidence            6665555543

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.58  E-value=6.4e-07  Score=89.01  Aligned_cols=146  Identities=14%  Similarity=0.019  Sum_probs=104.5

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      .+..|+++++|.++.+++.+............+++|+++||+ |||+.+.++.+...+.......    ..+.+.++...
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  295 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAA----DNSLWALLMLQ  295 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            566788888999999999888777766677788999999995 9999988876655442211110    12344455556


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.+++.|...+...++..|..+++          +.+..+  +...++|..+++.+.+++.   ||+..|.+.++..++
T Consensus       296 ~~~g~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~  365 (375)
T TIGR00899       296 LLNAIFIGILAGIGMLYFQDLMPGR----------AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIV  365 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcch----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            6667777777777777777765431          223444  6778899999999988775   899999998888877


Q ss_pred             HHHHHH
Q 037418          169 ATLVFL  174 (427)
Q Consensus       169 ~~iif~  174 (427)
                      +.++.+
T Consensus       366 ~~~~~~  371 (375)
T TIGR00899       366 ALFCLL  371 (375)
T ss_pred             HHHHHh
Confidence            776654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.55  E-value=1e-06  Score=88.97  Aligned_cols=149  Identities=12%  Similarity=0.044  Sum_probs=99.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      .+..|+++++|+++.+++.+.+.......+..+++|+++||+ ||||.+..+.....+.+.....    ..+.+.+....
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~  312 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLM----AHSPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHH
Confidence            566788888999999999888877777777889999999995 9999887766554432211110    11233344444


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~  170 (427)
                      .+.+++.|..-+...+...|..+++.       ....+.+ ....|+|..+++.+++++.   ||+..|.++++..++++
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p~~~-------g~~~~~~-~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~  384 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMPGQA-------GSATTLY-TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCc-------chHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            55555555555555555566554321       1122233 3557899999998888776   89999998888887777


Q ss_pred             HHHHh
Q 037418          171 LVFLS  175 (427)
Q Consensus       171 iif~~  175 (427)
                      ++.+.
T Consensus       385 ~~~~~  389 (393)
T PRK15011        385 FCLLR  389 (393)
T ss_pred             HHHHh
Confidence            66553

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.55  E-value=1.4e-06  Score=87.99  Aligned_cols=156  Identities=7%  Similarity=-0.056  Sum_probs=111.2

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~   83 (427)
                      .-++|+++. .+..|+.+ .|.+..+++.....+.....+..+++|+++|| .||++.+..+..+..+....+.. .  .
T Consensus       217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~-~--~  291 (393)
T PRK09705        217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIW-L--P  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHH-c--c
Confidence            346777887 67788876 79999999999999999999999999999999 59999988887666552221100 0  1


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKI  157 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~  157 (427)
                      .+....  ...+.++|.|...|+......|++++++  +      +.+.++  +...++|..+++.+.+++.    +|..
T Consensus       292 ~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~------~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  361 (393)
T PRK09705        292 LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA--I------AGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLM  361 (393)
T ss_pred             chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH--H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence            111122  2345677888888877777777765322  1      334454  7788889999999998886    5888


Q ss_pred             HhHHHHHHHHHHHHHHHh
Q 037418          158 RFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       158 ~F~i~~v~~~i~~iif~~  175 (427)
                      +|.+.++..+++.+....
T Consensus       362 ~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        362 DWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999888777776655543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.54  E-value=1.4e-06  Score=93.54  Aligned_cols=151  Identities=13%  Similarity=0.145  Sum_probs=110.5

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-----hhhcCC-C---------
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-----VSYEYK-P---------   78 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-----~~~~~~-~---------   78 (427)
                      ....-+.++++++.++.+.+.+.+.....+..++.|+++||. ||+|.+.+|.+++.+     .+|-.. .         
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            333445567999999999999999999999999999999995 999999999888777     222100 0         


Q ss_pred             -----------CC-----------------CC----CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhh
Q 037418           79 -----------EC-----------------IG----EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMR  126 (427)
Q Consensus        79 -----------~~-----------------~~----~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~  126 (427)
                                 .|                 ..    ......++++..+.++|.+...+...+++.|-+++++       
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~-------  205 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN-------  205 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc-------
Confidence                       01                 00    0124466789999999999999999999999886643       


Q ss_pred             hhHHHHHH--HHHHHHHHHHHhhhhceec-------------------------cchhHhHHHHHHHHHHHHHHH
Q 037418          127 SAKLFFFS--FCGVVLVPIIALIAFPYIK-------------------------PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       127 ~~~~~~f~--Y~~iNiG~~i~~~~~~~l~-------------------------g~~~~F~i~~v~~~i~~iif~  174 (427)
                        +...+.  +.+.++|..+|+++++++.                         +|+.+|.+.++..++..+.++
T Consensus       206 --~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       206 --SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             --cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              233333  7888888888887766442                         278889888776666554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09952 shikimate transporter; Provisional

Probab=98.53  E-value=1.8e-06  Score=88.51  Aligned_cols=162  Identities=9%  Similarity=0.032  Sum_probs=106.2

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPEC   80 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~   80 (427)
                      +++-+++|+.. .+..|+++.+|++......+.........+..+++|+++||+ ||||++..+.++..+ .++.... .
T Consensus       260 ~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~-~  337 (438)
T PRK09952        260 LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFFMA-L  337 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-H
Confidence            34557788877 677888888999988765555555556667778899999995 999999888665544 1111100 0


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HH-HHHHHHHHHhhhhceec----
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FC-GVVLVPIIALIAFPYIK----  153 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~-~iNiG~~i~~~~~~~l~----  153 (427)
                      ......+.+...+.+.+++.|...+...++.+|.++.+.         |.++..  |. +..+|+.++|.+.+++.    
T Consensus       338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~---------r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~  408 (438)
T PRK09952        338 EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY---------RYSGAGVGYQVASVVGGGFTPFIAAALVTYFG  408 (438)
T ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch---------hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            001123334445566678888888888899999887632         333433  43 34477778888887763    


Q ss_pred             -cchhHhHHHHHHHHHHHHHHHh
Q 037418          154 -PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       154 -g~~~~F~i~~v~~~i~~iif~~  175 (427)
                       +|...|...++..+++.+..+.
T Consensus       409 ~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        409 GSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHH
Confidence             4777777777766666655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.53  E-value=3e-05  Score=77.59  Aligned_cols=140  Identities=12%  Similarity=0.142  Sum_probs=110.0

Q ss_pred             hHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhHHHHHHHHHHH
Q 037418           20 TNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKILFYTALGLIA   97 (427)
Q Consensus        20 ~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~li~   97 (427)
                      -+++|.|..+|+..++.|....-++.++-..+.||+ .|||.++....+..+  .+..+      ..+++.+.++..+.+
T Consensus        40 A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi~~n~l~al------Ap~f~~Ll~aR~~~g  112 (394)
T COG2814          40 AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFIVSNLLSAL------APSFAVLLLARALAG  112 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHH
Confidence            357999999999999999999999999999999995 888888887777776  33333      346789999999999


Q ss_pred             hhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHH
Q 037418           98 FGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus        98 ~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~ii  172 (427)
                      +..|.+.+-..+..+|..++++         +.+...  +.+..+...+|.-++.++.   |||..|.+-++.-.++.+.
T Consensus       113 ~a~G~f~~i~~~~a~~lvpp~~---------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~  183 (394)
T COG2814         113 LAHGVFWSIAAALAARLVPPGK---------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLL  183 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCccc---------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987754         334444  5666666666666666665   9999999766665555554


Q ss_pred             HHh
Q 037418          173 FLS  175 (427)
Q Consensus       173 f~~  175 (427)
                      .+.
T Consensus       184 ~~~  186 (394)
T COG2814         184 LWK  186 (394)
T ss_pred             HHH
Confidence            443

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.53  E-value=2.1e-06  Score=84.95  Aligned_cols=154  Identities=14%  Similarity=0.004  Sum_probs=101.9

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHH-HH-------HHHHHHHHhhhcC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWM-LL-------VSSLAYSAVSYEY   76 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~-i~-------~g~~~~~~~~~~~   76 (427)
                      -++++++. .+..|+++.+|.+..+++.+.........+..+++|+++||+ |||+. +.       .+.++..+.....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T TIGR00893       228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLLMFAT  306 (399)
T ss_pred             HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            34556666 678889889999999999999988888899999999999995 87751 11       1111111111101


Q ss_pred             CCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec-
Q 037418           77 KPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK-  153 (427)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~-  153 (427)
                      .     ..+.......+.+++.+..+..|...++..|..++++         +.+.+.  ....++|..+++.+.+++. 
T Consensus       307 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~g~~~~~~i~g~l~~  372 (399)
T TIGR00893       307 N-----YVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNI---------AGLTGGLINSLGNLGGIVGPIVIGAIAA  372 (399)
T ss_pred             c-----cchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhH---------HHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence            0     0111222233333333333378889999999876543         233444  5677999999999998886 


Q ss_pred             --c-chhHhHHHHHHHHHHHHHHH
Q 037418          154 --P-WKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       154 --g-~~~~F~i~~v~~~i~~iif~  174 (427)
                        | |+..|.+.++..+++.++.+
T Consensus       373 ~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       373 TTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHH
Confidence              6 99999888877777766554

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.53  E-value=7.1e-07  Score=90.96  Aligned_cols=144  Identities=13%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             HHHHHhhHhcCCchHH-HHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhHHHH
Q 037418           14 VMITYLTNVWKISLVR-AAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~-A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~~~~   90 (427)
                      .+..|+.+++|+++++ .+.+.++|.-...++.+++|+++|| +|.|+.+.++.+...+  .+..+      ..+...+.
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~f------a~Sl~~L~  119 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLL------GTSVWHMQ  119 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            4788999999999999 9999999999999999999999999 5999999999888776  22212      23567888


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec--cchh---HhHHHHHH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK--PWKI---RFGIPAIF  165 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~--g~~~---~F~i~~v~  165 (427)
                      +..++.+++.|..- ....++..-+++++      | .+...+.-.+.++|.++++.+++++.  ||+.   ...++...
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kE------R-~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s  191 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSR------Y-QRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVF  191 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            99999999999998 88888988887543      1 12222225789999999988888765  6654   34466666


Q ss_pred             HHHHHHH
Q 037418          166 TVVATLV  172 (427)
Q Consensus       166 ~~i~~ii  172 (427)
                      +.+++++
T Consensus       192 ~~~a~~~  198 (511)
T TIGR00806       192 MTFSVFL  198 (511)
T ss_pred             HHHHHHH
Confidence            6666654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.51  E-value=2.2e-06  Score=85.99  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=101.3

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      .+..|+++ .|.+..+++.+.........+..++.|+++||+ |+++.+..+..++.+......       .......++
T Consensus       222 ~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~  292 (381)
T PRK03633        222 LMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-------SQAAMAPAL  292 (381)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Confidence            45667764 699999999988888888889999999999995 999998888777665222111       112233456


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.+++.+...|...+...|..++++         +.....  ..+.++|.++|+.+.+++.   ||++.|.+.+...++
T Consensus       293 ~l~g~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~  363 (381)
T PRK03633        293 FILGAAGFTLYPVAMAWACEKVEHHE---------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI  363 (381)
T ss_pred             HHHHHHHHhHHHHHHHHHHccCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            66677777778888888888764432         122222  4677999999999999885   899999987777665


Q ss_pred             HHHHH
Q 037418          169 ATLVF  173 (427)
Q Consensus       169 ~~iif  173 (427)
                      +.+..
T Consensus       364 ~~~~~  368 (381)
T PRK03633        364 YLLML  368 (381)
T ss_pred             HHHHH
Confidence            54333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.46  E-value=3.8e-06  Score=87.51  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=90.7

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCC
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECI   81 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~   81 (427)
                      ..-+.||++. -+..|+++.+|++..++..+.........+..+++|+++||+ |||+++.++.+...+ .++.+.. . 
T Consensus       261 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~-~-  337 (490)
T PRK10642        261 ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFIL-I-  337 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH-H-
Confidence            3457788888 788899888999998887776666666778888999999995 999999888764433 2221100 0 


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ...+...++.+..+.+++.+...+...++..+.++++.         |.+...  |-..++++.+++.+.+++.
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~---------Rg~~~g~~~~~~~~~g~~~p~i~g~l~  402 (490)
T PRK10642        338 NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI---------RYSALAAAFNISVLVAGLTPTLAAWLV  402 (490)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc---------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01234455566666666666666666777777776543         333333  4444555566777777653

>PRK11462 putative transporter; Provisional

Probab=98.44  E-value=0.00011  Score=76.15  Aligned_cols=129  Identities=13%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhc---ccchHHHHHH-HHHHHHHhhhc-CC-CCCCCCchhH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDT---IIGNYWMLLV-SSLAYSAVSYE-YK-PECIGEGQKI   87 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~---~lGr~~~i~~-g~~~~~~~~~~-~~-~~~~~~~~~~   87 (427)
                      -+..|.++.+|.+.+.++.++.+-..+--+.-++-|+++||   .+||||--++ |.+.+.+.... .. |..+......
T Consensus        31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~  110 (460)
T PRK11462         31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            47788899999999999999999999999999999999998   4799876654 44555552221 11 2111112233


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIA  148 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~  148 (427)
                      .+++...+..++..++...-.++.++.-++  ++|   |.+..+.. -.+.++|.++++.+
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e---Rt~l~s~r-~~~~~iG~~~~~~~  165 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ---RISLQSWR-FVLATAGGMLSTVL  165 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH---HHHHHHHH-HHHHHHHHHHHHHH
Confidence            344455566778888888888999987644  444   22223322 45667776665444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.43  E-value=1.2e-06  Score=73.43  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             HHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCC
Q 037418           37 FWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMT  116 (427)
Q Consensus        37 ~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~  116 (427)
                      +.....+..++.|+++||+ |||+.+..+..+..+......  .  ..+.+.+.....+.+++.+...+...++..|.++
T Consensus         7 ~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFA--L--SSNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHH--H--hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3445567788899999995 999999988877766221111  0  1245666777888999999999999999999876


Q ss_pred             cchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHHH
Q 037418          117 DSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       117 ~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif~  174 (427)
                      +++         +.+..+  +...++|..+++.+.+++.   ||+..|.+.++..+++.+...
T Consensus        82 ~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        82 PEE---------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             hhh---------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            543         233333  6778899988888888775   898888887777666655544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.43  E-value=1.9e-06  Score=86.82  Aligned_cols=147  Identities=10%  Similarity=-0.019  Sum_probs=98.8

Q ss_pred             HHHHHhhHhcCCchH---HHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCCCCCCchhHHH
Q 037418           14 VMITYLTNVWKISLV---RAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPECIGEGQKILF   89 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~---~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~~~~~~~~~~~   89 (427)
                      .+..|+.+..+....   .++.+...+.....+..++.|+++||+ ||++++..+..+..+. ++...     ..+.+.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  314 (408)
T PRK09874        241 ILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF-----VQTPLQL  314 (408)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH-----hccHHHH
Confidence            556677664433222   123333344444556677889999995 9999999887766652 22111     1234556


Q ss_pred             HHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418           90 YTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI  164 (427)
Q Consensus        90 ~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v  164 (427)
                      ++...+.+++.|...|...++..+..+++.         +.+.++  +...++|..+|+.+.+++.   ||+..|.+.++
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~  385 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQI---------AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAG  385 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCccc---------ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHH
Confidence            677788899999999998888876544322         233444  5667899999999988775   89999999888


Q ss_pred             HHHHHHHHHHh
Q 037418          165 FTVVATLVFLS  175 (427)
Q Consensus       165 ~~~i~~iif~~  175 (427)
                      ..+++.+....
T Consensus       386 ~~l~~~~~~~~  396 (408)
T PRK09874        386 VVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHHHH
Confidence            88777765544

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.42  E-value=3.3e-06  Score=86.49  Aligned_cols=155  Identities=14%  Similarity=0.068  Sum_probs=91.4

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccch-HHHH-HH---HHHHHHHhhhcCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGN-YWML-LV---SSLAYSAVSYEYKPEC   80 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr-~~~i-~~---g~~~~~~~~~~~~~~~   80 (427)
                      +.++++. .+..|+++.+|++..+++.....+.....++.+++|+++||+.++ |+.. ..   +..+..+.+....   
T Consensus       257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~---  333 (434)
T PRK11663        257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP---  333 (434)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc---
Confidence            3444555 567788888999999999999999999999999999999997533 2222 11   1111111111111   


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccc--cccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cc
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLV--SIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PW  155 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~--~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~  155 (427)
                        ..+......  .+..+|.+..-|  ......+|.++++.      +. ....+.+...++|..+++.+.+++.   ||
T Consensus       334 --~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g-~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~  402 (434)
T PRK11663        334 --FASYVMQAA--CFFTIGFFVFGPQMLIGMAAAECSHKEA------AG-AATGFVGLFAYLGAALSGYPLAKVLEIWHW  402 (434)
T ss_pred             --cccHHHHHH--HHHHHHHHHhhHHHHHHHHHHhcccHhh------HH-hHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence              112222222  222233322222  22334455543221      11 2222227888999999998888876   89


Q ss_pred             hhHhHHHHHHHHHHHHHHHh
Q 037418          156 KIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~~  175 (427)
                      +..|.+.++..+++.++.+.
T Consensus       403 ~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        403 TGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998887777666655543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.42  E-value=1.5e-06  Score=86.36  Aligned_cols=151  Identities=15%  Similarity=0.056  Sum_probs=104.1

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPEC   80 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~   80 (427)
                      +...+.++++. .+..|+++++|.+..+++.+.........+..+++|+++||+ |||+.+..+..+..+ .++.... .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-~  306 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMA-L  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHH-H
Confidence            34556777777 788888888999999999998888888889999999999995 999987766544433 2111100 0


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--H-HHHHHHHHHHhhhhceec---c
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--F-CGVVLVPIIALIAFPYIK---P  154 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y-~~iNiG~~i~~~~~~~l~---g  154 (427)
                      ....+.+.+.....+.+++.+...+...++..|.+++++         +.+.+.  | .+..+|..+++.+.+++.   |
T Consensus       307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV---------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc---------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            001234555667777888888899999999999887643         222222  3 455678888888888775   5


Q ss_pred             -chhHhHHHHH
Q 037418          155 -WKIRFGIPAI  164 (427)
Q Consensus       155 -~~~~F~i~~v  164 (427)
                       |+..+...++
T Consensus       378 ~~~~~~~~~~~  388 (394)
T TIGR00883       378 DWYAIGYYLAA  388 (394)
T ss_pred             cchhHHHHHHH
Confidence             6655544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.41  E-value=6.1e-06  Score=86.20  Aligned_cols=138  Identities=13%  Similarity=0.080  Sum_probs=97.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hh-cCCCCCCCCchhHHHHHHHHHHHhhcc
Q 037418           24 KISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SY-EYKPECIGEGQKILFYTALGLIAFGMS  101 (427)
Q Consensus        24 ~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~li~~g~g  101 (427)
                      +.+..+.+.+...+.....++.++.|+++||+ |||+++.++.+++.+. +. ...+......+...++++..+.++|.|
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  130 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG  130 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence            44566677778888888889999999999995 9999999998887762 11 121110001125678899999999999


Q ss_pred             cccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee-------------------------c-
Q 037418          102 GHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI-------------------------K-  153 (427)
Q Consensus       102 ~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l-------------------------~-  153 (427)
                      +.-|....++.|.++++.         |....+  +...++|.++++.+..++                         + 
T Consensus       131 ~~~~~~~~~~~e~~p~~~---------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (502)
T TIGR00887       131 GDYPLSAIITSEFATKKW---------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDY  201 (502)
T ss_pred             hhhHHHHHHHHHhcChhh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcc
Confidence            999999999999887643         233333  677788877776554321                         2 


Q ss_pred             cchhHhHHHHHHHHHHHH
Q 037418          154 PWKIRFGIPAIFTVVATL  171 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~i  171 (427)
                      +|++.|.+.++..++..+
T Consensus       202 ~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       202 MWRILIGFGAVPALLALY  219 (502)
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            799999877766554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.40  E-value=2e-06  Score=86.14  Aligned_cols=135  Identities=14%  Similarity=0.041  Sum_probs=97.2

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      .+..|+++++|++..+++.+...+.....+..+++|+++||+ |||+.+.++..+..+ .+.....    ..+.+.+.++
T Consensus       260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  334 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAI----GANVAVLGLG  334 (405)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHh----CCchHHHHHH
Confidence            466788888999999999999998888999999999999995 999999888776533 1211110    1233444555


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---c-chhHhHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---P-WKIRFGIP  162 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g-~~~~F~i~  162 (427)
                      +.+.+...+...+...++..|.++++.         +.+.+.  +...++|..+++.+.+++.   | |+.+|...
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       335 LFFQQMLVQGIWGILPKHLGEYFPTDQ---------RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHHHHccchhhHHHHHhhhCCcch---------hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            555666666666777788888775432         333444  6788999999999998886   5 77766653

>PRK03545 putative arabinose transporter; Provisional

Probab=98.39  E-value=6.9e-06  Score=82.64  Aligned_cols=155  Identities=8%  Similarity=-0.050  Sum_probs=106.5

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCch
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQ   85 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~   85 (427)
                      +.+++.. .+..|+++..|++..+++.+...+.....+..+++|+++||+ ||++. ..+..+..+....+.. .  ..+
T Consensus       219 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l~~-~--~~~  293 (390)
T PRK03545        219 TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLLLP-A--ANS  293 (390)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHHHH-H--hch
Confidence            3444444 566778888999999999999999988999999999999995 87664 4444443331111100 0  123


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhH
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFG  160 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~  160 (427)
                      .+.+++...+.+++.+..-+...+.+.+..+++          +.+...  ....++|..+|+.+.+++.   |++..|.
T Consensus       294 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~  363 (390)
T PRK03545        294 EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDA----------TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGY  363 (390)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence            455666777778888777777777776654321          233333  3456788888888888765   8999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 037418          161 IPAIFTVVATLVFLSG  176 (427)
Q Consensus       161 i~~v~~~i~~iif~~~  176 (427)
                      +.++...++++++...
T Consensus       364 ~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        364 VGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888777654

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.37  E-value=3.9e-06  Score=87.06  Aligned_cols=141  Identities=12%  Similarity=-0.010  Sum_probs=93.8

Q ss_pred             HH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCCCCCCchhHHH
Q 037418           12 MW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPECIGEGQKILF   89 (427)
Q Consensus        12 ~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~~~~~~~~~~~   89 (427)
                      +. .+..|+++.+|++..+++.+...+.....+..+++|+++||+ |||+.+..+..+..+. +.....   .....+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  369 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI---GGANVWVL  369 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc---cccHHHHH
Confidence            45 678888888999999999999999999999999999999995 9999988876655542 111110   01122222


Q ss_pred             HHHHHHHH-hhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           90 YTALGLIA-FGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        90 ~~~l~li~-~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      ...+.+.+ .|.| ..+...++..|.++++.         +.+.++  +...++|..+|+.+.+++.   ||+..|.+.+
T Consensus       370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~  439 (496)
T PRK03893        370 GLLLFFQQMLGQG-ISGLLPKLIGGYFDTEQ---------RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS  439 (496)
T ss_pred             HHHHHHHHHHhcc-cchhhHHHHHhhCCHHH---------hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            22222222 3333 34556667777665432         344444  6778899999999988886   7777765444


Q ss_pred             HHH
Q 037418          164 IFT  166 (427)
Q Consensus       164 v~~  166 (427)
                      +.+
T Consensus       440 ~~~  442 (496)
T PRK03893        440 FSL  442 (496)
T ss_pred             HHH
Confidence            433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.37  E-value=3.6e-06  Score=86.83  Aligned_cols=155  Identities=12%  Similarity=-0.011  Sum_probs=107.4

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc-cchHHHHHHH--HHHHHHhhhcCCCCCCCC
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI-IGNYWMLLVS--SLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~-lGr~~~i~~g--~~~~~~~~~~~~~~~~~~   83 (427)
                      ++++.. .+..|+++ +|++..+++.+.+.......++.+++|+++||. .++++...++  .++..+......    ..
T Consensus       256 ~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~----~~  330 (455)
T TIGR00892       256 GFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA----LA  330 (455)
T ss_pred             HccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence            344444 56677764 799999999999988888888888999999984 3444433332  222222111110    01


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKI  157 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~  157 (427)
                      .+.+.+++...+.+++.|...++..+++.|.+++++         +.+.+.  ....++|..+|+.+.+++.    +|+.
T Consensus       331 ~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  401 (455)
T TIGR00892       331 GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR---------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKY  401 (455)
T ss_pred             chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH---------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcch
Confidence            245666777888899999999999999998775432         233333  6778999999999999775    5999


Q ss_pred             HhHHHHHHHHHHHHHHHhc
Q 037418          158 RFGIPAIFTVVATLVFLSG  176 (427)
Q Consensus       158 ~F~i~~v~~~i~~iif~~~  176 (427)
                      .|.++++..+++.+..+.+
T Consensus       402 ~f~~~~~~~li~~~~~~~~  420 (455)
T TIGR00892       402 IFYASGSIVVSAGLFLAIG  420 (455)
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            9999888877776654443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.36  E-value=5e-06  Score=84.44  Aligned_cols=151  Identities=11%  Similarity=0.001  Sum_probs=104.8

Q ss_pred             HhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHH
Q 037418           10 YAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKIL   88 (427)
Q Consensus        10 Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~   88 (427)
                      +++. .+..|+.+.+|++..+++.+...+.....+..+++|+++|+. ++++.+..+..+..+.+..+..    ..+.+.
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~----~~~~~~  314 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGL----MPMWIL  314 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHc----cchHHH
Confidence            3444 566788777999999999999888888889999999999984 7777777776655542211110    123445


Q ss_pred             HHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           89 FYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        89 ~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      ..+++.+.+++.+...+...+++.|..+++.         +.+.+.  +...++|..+|+.+.+++.   |+...|.+.+
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~  385 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEM---------LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASG  385 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHH
Confidence            5667777888888877777788887765432         233444  5667889999999988886   7777777665


Q ss_pred             HHHHHHHHHHH
Q 037418          164 IFTVVATLVFL  174 (427)
Q Consensus       164 v~~~i~~iif~  174 (427)
                      ++..+..++..
T Consensus       386 ~~~~~~~~~~~  396 (417)
T PRK10489        386 FGLLIIGVLLL  396 (417)
T ss_pred             HHHHHHHHHHH
Confidence            55444444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.36  E-value=8e-06  Score=82.42  Aligned_cols=144  Identities=12%  Similarity=-0.085  Sum_probs=98.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      .+..|+++ .|++..+++.+...+.....+..+++|+++||+ ||++++..+.....+.+..+..    ..+.+.+.+..
T Consensus       242 ~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  315 (406)
T PRK11551        242 WLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA----APSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHH
Confidence            34556654 799999999999999988999999999999995 9999988765554442111110    11334444555


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTV  167 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~  167 (427)
                      .+.+++.++..+...++..|.+++++         +.+...  +...++|.++++.+.+++.    +|...|.+.+...+
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~  386 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQV---------RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVIL  386 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhh---------hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHH
Confidence            66777777777888888888876543         233333  6778899999999988874    45555655555554


Q ss_pred             HHHHH
Q 037418          168 VATLV  172 (427)
Q Consensus       168 i~~ii  172 (427)
                      ++.+.
T Consensus       387 ~~~~~  391 (406)
T PRK11551        387 VAALA  391 (406)
T ss_pred             HHHHH
Confidence            44433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.31  E-value=5e-06  Score=85.96  Aligned_cols=154  Identities=14%  Similarity=0.028  Sum_probs=91.7

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCc
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEG   84 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~   84 (427)
                      .++++. -+..|+++.+|++..+++.....+.....+..+++|+++||+ |||+.+..+..+..+.  +.....    ..
T Consensus       273 ~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~----~~  347 (467)
T PRK09556        273 VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQH----AT  347 (467)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHh----cC
Confidence            345555 577899999999999999998888888899999999999996 8888766554333221  111110    11


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHH-HHHHHhhhhcee---------
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVL-VPIIALIAFPYI---------  152 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNi-G~~i~~~~~~~l---------  152 (427)
                      +....++.+.+++++.............|.++++.         +.....  -...|+ |..+++.+.+++         
T Consensus       348 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~---------~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~  418 (467)
T PRK09556        348 SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA---------IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP  418 (467)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh---------HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence            22333344444443222222222244556665432         222222  345554 545555555443         


Q ss_pred             -----c-cchhHhHHHHHHHHHHHHHHHh
Q 037418          153 -----K-PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       153 -----~-g~~~~F~i~~v~~~i~~iif~~  175 (427)
                           . ||+.+|.+..++.+++.+..+.
T Consensus       419 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        419 IFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHH
Confidence                 2 6999998888888777666553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.31  E-value=7.2e-06  Score=83.54  Aligned_cols=149  Identities=13%  Similarity=0.023  Sum_probs=95.2

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcC----CCCCCCC--chhHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEY----KPECIGE--GQKILF   89 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~----~~~~~~~--~~~~~~   89 (427)
                      ..++.+.+|++..+++...........+..+++|+++||+ |||+.+.++..+..+....+    .......  ......
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA  385 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence            3444467899998888888888888899999999999995 99999988876655511111    0000000  001222


Q ss_pred             HHHHHHHHhhcc-cccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           90 YTALGLIAFGMS-GHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        90 ~~~l~li~~g~g-~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      ...+.+...+.+ +.-++...+..|.++++.         +.....  +.+.|+|.++++.+.+++.   ||...|.+.+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~  456 (481)
T TIGR00879       386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSL---------RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG  456 (481)
T ss_pred             HHHHHHHHHHHHccccCeehhhhhccCChHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence            222222222222 344777777788876543         222333  6788999999998888765   8988888777


Q ss_pred             HHHHHHHHHHH
Q 037418          164 IFTVVATLVFL  174 (427)
Q Consensus       164 v~~~i~~iif~  174 (427)
                      +..+++.++..
T Consensus       457 ~~~~~~~i~~~  467 (481)
T TIGR00879       457 GLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHh
Confidence            77666665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=98.30  E-value=5.5e-06  Score=83.33  Aligned_cols=151  Identities=12%  Similarity=0.050  Sum_probs=103.3

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQK   86 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~   86 (427)
                      ++.++. .+..|+.+ .+++.  ++.....+.....+..++.|++.||+ |++|.+.++..+..+.......    ..+.
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~----~~~~  302 (392)
T PRK12382        231 GFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWL----APTA  302 (392)
T ss_pred             HHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHH----cccH
Confidence            334444 44566654 45543  44455566666677888999999995 9999998887776652211110    1234


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHH
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGI  161 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i  161 (427)
                      +..+++..+.+++.+...|...+...|.+++++         +.+.+.  +...++|..+++.+.+++.   ||+..|.+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~  373 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQV---------RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA  373 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            455667778888888888888777777664322         334444  6778999999998888876   99999999


Q ss_pred             HHHHHHHHHHHHHh
Q 037418          162 PAIFTVVATLVFLS  175 (427)
Q Consensus       162 ~~v~~~i~~iif~~  175 (427)
                      .++..+++.++.+.
T Consensus       374 ~~~~~~~~~~~~~~  387 (392)
T PRK12382        374 GAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888887776654

>TIGR01272 gluP glucose/galactose transporter

Probab=98.30  E-value=6.2e-06  Score=80.79  Aligned_cols=139  Identities=10%  Similarity=0.086  Sum_probs=103.0

Q ss_pred             HHHHHhhHh--cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNV--WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~--l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (427)
                      -+..|+++.  +|++..+++.....+.+...+..++++++.||+ |++|.+.++..+..+.......    ..... ...
T Consensus       162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~~~~l~~~----~~~~~-~~~  235 (310)
T TIGR01272       162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVLLSIGAAL----THGYV-AMW  235 (310)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH----cCCHH-HHH
Confidence            388899754  799999999999999999999999999999995 9999998887776662211110    01112 234


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHHHHHHH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTV  167 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~  167 (427)
                      ++.+++++.+.+.|++.++..+.++++..        ..+.. ..+..+|.++.|.+.+.+.   |.+.+|.++.++.+
T Consensus       236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~~~--------~asai-~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~  305 (310)
T TIGR01272       236 FVLALGLFNSIMFPTIFSLALNALGRHTS--------QGSGI-LCLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL  305 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhh--------hhHHH-HHHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            66789999999999999999888765422        22333 3556688888888888775   88888886665543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.30  E-value=5.3e-06  Score=86.03  Aligned_cols=160  Identities=14%  Similarity=0.087  Sum_probs=113.2

Q ss_pred             hhhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccc-----hHHHHHHHHHHHH-Hhhh
Q 037418            2 FWADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIG-----NYWMLLVSSLAYS-AVSY   74 (427)
Q Consensus         2 ~~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lG-----r~~~i~~g~~~~~-~~~~   74 (427)
                      .++|-.. +-+. .+..++++++|.+.++.+...+.......+-|+ .|.++||+ +     ||+-++++.++.. +...
T Consensus        35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~~  111 (468)
T TIGR00788        35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILYG  111 (468)
T ss_pred             HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHHH
Confidence            4667777 5555 788888889999999998877766666556665 89999997 6     6777777776662 3222


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec-
Q 037418           75 EYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK-  153 (427)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~-  153 (427)
                      .+..   ...........+.+.+++.+.......++..|+.+ ++++.   ....++.+ |.+.++|.++|+.+++++. 
T Consensus       112 ~l~~---~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~---~~~~~s~~-~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       112 LLPG---KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA---GPSLVSWM-WGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             hccc---ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc---CCCeeeHH-HHHHHHHHHHHHHHHHHHHH
Confidence            2221   01122333346788999999999999999999987 33322   11112222 8889999999999998876 


Q ss_pred             --cchhHhHHHHHHHHHHHHH
Q 037418          154 --PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       154 --g~~~~F~i~~v~~~i~~ii  172 (427)
                        ||+..|.+.++..++....
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~  204 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFV  204 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHH
Confidence              8999999888877766443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.28  E-value=0.00039  Score=69.86  Aligned_cols=158  Identities=11%  Similarity=0.017  Sum_probs=89.7

Q ss_pred             hhhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHH--HH-HHHHHHHhhhHHHHhhhcccchHHHHHHHHHHH-H--H-hh
Q 037418            2 FWADIFAAYAMW-VMITYLTNVWKISLVRAAAIV--NF-FWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY-S--A-VS   73 (427)
Q Consensus         2 ~~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~--~~-~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~-~--~-~~   73 (427)
                      +++|-+.+.-.. .+..|++ +.|.+.++.+.+.  .. +..-....|+++++.+|| +||||..+++..+. .  + .+
T Consensus        10 y~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~   87 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASL   87 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHH
Confidence            355555544444 6666775 4699999998863  32 333335677777888998 59999976665332 1  1 12


Q ss_pred             hcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhc
Q 037418           74 YEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFP  150 (427)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~  150 (427)
                      ....+   .......+...+.+.+.......+...++..|..++++         + ..++   -++..+|.++|....+
T Consensus        88 ~~~~~---~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~---------~-~~~~~~~~~g~~lG~~~g~~~~~  154 (390)
T TIGR02718        88 ALVGP---DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT---------L-AKGNAVQIAGVMIGFFGGGAGTL  154 (390)
T ss_pred             HcCCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---------h-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            21111   01111122223333445555555555555444332111         1 2233   4566888888887776


Q ss_pred             eec---cchhHhHHHHHHHHHHHHHHH
Q 037418          151 YIK---PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       151 ~l~---g~~~~F~i~~v~~~i~~iif~  174 (427)
                      ++.   ||+..|.+.++..++..+..+
T Consensus       155 ~l~~~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       155 VLFGKFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            664   999999988877766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=2.9e-06  Score=83.69  Aligned_cols=160  Identities=11%  Similarity=0.032  Sum_probs=121.5

Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcc
Q 037418           22 VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMS  101 (427)
Q Consensus        22 ~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g  101 (427)
                      .++.++++.+.+.+.+.....+...+-|.+.|| +|++-.+++|..++......+.  +  ..+++.++++..+-++|.+
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFa--f--g~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFA--F--GNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHH--H--cchhHHHHHHHHHhhhhHH
Confidence            467788999999999999999999999999998 6999999999999888332222  1  2457789999999999999


Q ss_pred             cccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHH-HHh
Q 037418          102 GHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLV-FLS  175 (427)
Q Consensus       102 ~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~ii-f~~  175 (427)
                      +...+-.++++|.|+++..        |.+...  --.+.+|..+||-.++.+-   |+++-|++.++.+++...+ ++.
T Consensus       175 ~~~tsglamlAd~f~~d~e--------r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNE--------RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHhhhHHHHHHHcccchh--------hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            9999999999999988653        233333  4567888888888888775   9999999888887776654 444


Q ss_pred             cccceeec--CCCCChhHHHH
Q 037418          176 GTCSYRRR--KPLGSPLTTVF  194 (427)
Q Consensus       176 ~~~~~~~~--~p~g~pl~~~~  194 (427)
                      -+++-.+.  .+++.|+.++.
T Consensus       247 i~p~~~~~~~~~~~~~~~~Ll  267 (464)
T KOG3764|consen  247 IEPTEMDPDSTEQGTPMWSLL  267 (464)
T ss_pred             eCccccCccccccCccHHHHH
Confidence            44421111  34555665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.26  E-value=2.7e-05  Score=77.21  Aligned_cols=130  Identities=17%  Similarity=0.181  Sum_probs=100.8

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      +|+..+.+.++++..||+.+-.+|-+...+.++..|++.+|+ |+|+.|++|..++.+......| -.....+..+..++
T Consensus        34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~p-Aa~~~~y~~FL~~l  111 (422)
T COG0738          34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWP-AASSKSYGFFLVAL  111 (422)
T ss_pred             hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHH
Confidence            688888899999999999999999999999999999999995 9999999999999983222210 00134577888999


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l  152 (427)
                      .+++.|.|..++..++++++.-++++..+   |-....    -...+|+.++|.+++++
T Consensus       112 Fila~Gi~~LetaaNp~v~~lg~~~~a~~---rlnl~q----~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         112 FILASGIGLLETAANPYVTLLGKPESAAF---RLNLAQ----AFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHhhhHHHHhccchHHHHhCCchhHHH---HHHHHH----HhhhhHHHHHHHHHHHH
Confidence            99999999999999999999887754332   222222    33466777776665543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.26  E-value=0.00013  Score=74.59  Aligned_cols=131  Identities=15%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc---cchHHHHHH-HHHHHHH-hhhcCC-CCCCCCchhH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI---IGNYWMLLV-SSLAYSA-VSYEYK-PECIGEGQKI   87 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~---lGr~~~i~~-g~~~~~~-~~~~~~-~~~~~~~~~~   87 (427)
                      -|..|.|+..|++.+.|+.+..+--..--+.-++-|.+.||.   +||||--++ |.+-..+ ...... |+.+......
T Consensus        34 yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~  113 (467)
T COG2211          34 YLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI  113 (467)
T ss_pred             HHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence            477888899999999999999999999999999999999974   688776544 4444444 222122 2222223444


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      ..++-..+..++...+.-.-.++.++.-  +|++|      |.+..+  -+..|+|.++...+.+.+
T Consensus       114 ya~vtY~l~~l~YT~vniPy~al~~~iT--~d~~E------R~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211         114 YALVTYMLLGLGYTLVNIPYGALGPEIT--QDPQE------RASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             HHHHHHHHHHHHHHheeCchhhcchhhc--CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667778888888777788888764  44655      444544  677888877766665444

>TIGR00889 2A0110 nucleoside transporter

Probab=98.25  E-value=1.3e-05  Score=81.75  Aligned_cols=136  Identities=11%  Similarity=0.111  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhHHHHHHHHHHHhhcccccc
Q 037418           28 VRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKILFYTALGLIAFGMSGHLV  105 (427)
Q Consensus        28 ~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~  105 (427)
                      .+.+.+.+.......+..++.|+++||+ |||+++.++.++..+.  +..... . .....+.+++...+.+++.+...+
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~-~-~~~~~~~l~l~~~l~g~~~~~~~~  327 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGD-P-EYFGYALLFLSMIVYGCAFDFFNI  327 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcC-c-chhhHHHHHHHHHHHHHHHHHHHH
Confidence            4557777777777778889999999995 9999999998887762  221210 0 011234566778888999999989


Q ss_pred             cccchhcccCCcchhhhhhhhhhHHHHHH--H-HHHHHHHHHHhhhhceec---------cchhHhHHHHHHHHHHHHHH
Q 037418          106 SIGGFMADQMTDSRAEQVSMRSAKLFFFS--F-CGVVLVPIIALIAFPYIK---------PWKIRFGIPAIFTVVATLVF  173 (427)
Q Consensus       106 ~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y-~~iNiG~~i~~~~~~~l~---------g~~~~F~i~~v~~~i~~iif  173 (427)
                      +...++.|.+++++         +.+.++  + ...++|..+|+.+.+++.         ||+.+|.++++..+++.+++
T Consensus       328 ~~~~~i~~~~p~~~---------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~  398 (418)
T TIGR00889       328 SGSVFVEKEVPVHI---------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLF  398 (418)
T ss_pred             HHHHHHHHHCCHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999876543         344555  2 456789999999988764         38889988777766665554


Q ss_pred             Hh
Q 037418          174 LS  175 (427)
Q Consensus       174 ~~  175 (427)
                      ..
T Consensus       399 ~~  400 (418)
T TIGR00889       399 MI  400 (418)
T ss_pred             HH
Confidence            43

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.24  E-value=7.8e-06  Score=83.16  Aligned_cols=147  Identities=10%  Similarity=0.020  Sum_probs=101.6

Q ss_pred             HHHHHhhHhc---CCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHH
Q 037418           14 VMITYLTNVW---KISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l---~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~   90 (427)
                      .+..|+.+.+   +.+..+.+.+.++......+..+++|+++||+ |||+.+.++..+..+.......    ..+.+.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~  319 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGF----ATGPLEVS  319 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHh----cccHHHHH
Confidence            4566666543   55666777777777777778899999999995 9999998888777662211110    12345566


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI  164 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v  164 (427)
                      ....+.+++.+...+....++.+.++++.         +...+.   ....++|..+++.+.+++.   ||+..|.+.++
T Consensus       320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~  390 (420)
T PRK09528        320 ILKLLHAFEVPFLLVGVFKYITLNFDVRL---------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG  390 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccc---------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence            66777888888887777778887775432         122221   2557899999999988886   99999998777


Q ss_pred             HHHHHHHHHH
Q 037418          165 FTVVATLVFL  174 (427)
Q Consensus       165 ~~~i~~iif~  174 (427)
                      ..+++.++.+
T Consensus       391 ~~~i~~~~~~  400 (420)
T PRK09528        391 IVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHH
Confidence            6665554444

>PRK15075 citrate-proton symporter; Provisional

Probab=98.23  E-value=1.7e-05  Score=81.14  Aligned_cols=136  Identities=10%  Similarity=-0.027  Sum_probs=86.2

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhc--CCCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYE--YKPEC   80 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~--~~~~~   80 (427)
                      ...+++++. -+..|+++.+|++..++..+...+.....+..+++|+++||+ ||||.+.++..+..+ .++.  .... 
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~-  327 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLVA-  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            455677777 678888888999999988777777777778899999999995 999988876554432 1111  1000 


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHH-HHHHHHhhhhceec
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVV-LVPIIALIAFPYIK  153 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iN-iG~~i~~~~~~~l~  153 (427)
                        ..........+.+.+++.|...+...++..|.++++.         +...+.  |-..+ +++.+++.+.+++.
T Consensus       328 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~---------rg~~~g~~~~~~~~~~g~~~p~~~g~i~  392 (434)
T PRK15075        328 --APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV---------RTAGFSLAYSLATAIFGGFTPAISTWLI  392 (434)
T ss_pred             --CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc---------cchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence              1122223334455566777777767778888776543         233443  22223 23455777777664

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.22  E-value=2.6e-05  Score=76.60  Aligned_cols=152  Identities=15%  Similarity=0.068  Sum_probs=104.0

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLI   96 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li   96 (427)
                      ..+.+..|+++.+.+.++-.--+...++..+.|.++||+ ||||..+..+++|.+....-.     ..+.+.+.+|.++-
T Consensus        58 Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-----~~~~~~L~~GRvlg  131 (354)
T PF05631_consen   58 YALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-----SSNYPVLLLGRVLG  131 (354)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHH
Confidence            334456899999988888776666677777779999995 999999999999998433222     34578899999999


Q ss_pred             HhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec-----cchhHhHHHHHHHHH
Q 037418           97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK-----PWKIRFGIPAIFTVV  168 (427)
Q Consensus        97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~-----g~~~~F~i~~v~~~i  168 (427)
                      ++++.+..+.--+....+..+++-+    +..+..-|+   ++.+.+-+..+..++-++.     |...-|..+.+..++
T Consensus       132 GiaTSLLfS~FEsW~V~Eh~~~g~~----~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~  207 (354)
T PF05631_consen  132 GIATSLLFSAFESWMVHEHNKRGFP----QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV  207 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999999988888776665443322    112344554   2222233333333433332     446779988888888


Q ss_pred             HHHHHHhccc
Q 037418          169 ATLVFLSGTC  178 (427)
Q Consensus       169 ~~iif~~~~~  178 (427)
                      +.++....++
T Consensus       208 ~~~~I~~~W~  217 (354)
T PF05631_consen  208 AAVLILKTWP  217 (354)
T ss_pred             HHHHHHhccc
Confidence            8876665544

>PTZ00207 hypothetical protein; Provisional

Probab=98.20  E-value=1.6e-05  Score=84.10  Aligned_cols=145  Identities=12%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             HhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhH
Q 037418           10 YAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKI   87 (427)
Q Consensus        10 Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~   87 (427)
                      |+..+....+.+++|+++.+.+.+.+...... .+.+++|+++||+ |+|+++.++.++..+.  +..+........+.+
T Consensus        44 y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~  121 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV  121 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence            33445666788899999999999887754444 4566789999995 9999999999988871  111110000023577


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHH-Hhhhhceec-cchhHhHHHH
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPII-ALIAFPYIK-PWKIRFGIPA  163 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i-~~~~~~~l~-g~~~~F~i~~  163 (427)
                      .+++...+.++|.|.+.+.....+.+.|+++          |.....  ..+.++|+.+ +++...++. +|+..|.+.+
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~----------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~  191 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN----------RGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM  191 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7888889999999988888888888887532          233333  6778888874 555555555 7776665444


Q ss_pred             HHH
Q 037418          164 IFT  166 (427)
Q Consensus       164 v~~  166 (427)
                      +..
T Consensus       192 vl~  194 (591)
T PTZ00207        192 SFA  194 (591)
T ss_pred             HHH
Confidence            443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.20  E-value=2.8e-05  Score=80.70  Aligned_cols=153  Identities=13%  Similarity=0.019  Sum_probs=93.0

Q ss_pred             HhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHH-------HHHHHHHHHHHhhhcCCCCCC
Q 037418           10 YAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW-------MLLVSSLAYSAVSYEYKPECI   81 (427)
Q Consensus        10 Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~-------~i~~g~~~~~~~~~~~~~~~~   81 (427)
                      +++. .+..|+.+++|++..+++.+...+.....+..+++|+++||+ |||+       .+.+...+..+.+..+.  . 
T Consensus       269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~--~-  344 (476)
T PLN00028        269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLG--R-  344 (476)
T ss_pred             HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhc--c-
Confidence            3344 466788888999999999999999999999999999999995 7652       22222222211111111  0 


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchh
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKI  157 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~  157 (427)
                       ..+.+...+.+.+.+++.+...+...+...+..    +++      +.....  ..+.|+|+.+++.+.+.-.  +|+.
T Consensus       345 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~------~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~  413 (476)
T PLN00028        345 -ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS----RRS------LGVISGLTGAGGNVGAVLTQLLFFTGSSYSTET  413 (476)
T ss_pred             -cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC----hhh------chhhhhhhhccccHHHHHHHHHHHhcCCccHhh
Confidence             123334444555666665555555555554432    221      222222  4455666666665544212  6999


Q ss_pred             HhHHHHHHHHHHHHHHHhcc
Q 037418          158 RFGIPAIFTVVATLVFLSGT  177 (427)
Q Consensus       158 ~F~i~~v~~~i~~iif~~~~  177 (427)
                      +|.+.++.++++.++.++.+
T Consensus       414 ~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        414 GISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhee
Confidence            99999988888888777654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.20  E-value=3.2e-05  Score=80.24  Aligned_cols=158  Identities=15%  Similarity=0.172  Sum_probs=121.5

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchH--HHHHHHHHHHHH----hhhcCCCCC
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNY--WMLLVSSLAYSA----VSYEYKPEC   80 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~--~~i~~g~~~~~~----~~~~~~~~~   80 (427)
                      +...+. ...+|.++.+|++..+-..+.-+-.....++.++.|++.||+ |.+  ++++.+..+..+    .+.++.+..
T Consensus       296 g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~  374 (477)
T PF11700_consen  296 GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLFGFWPSF  374 (477)
T ss_pred             HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            344455 788999999999999998888888999999999999999995 988  888888877754    222111110


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----c
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----P  154 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g  154 (427)
                      ....+.+-+++.=.++++..|...+..-++.++..++++.         ..+|.  -..--..+++||.+.+.+.    +
T Consensus       375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e---------~efFgly~i~gk~ss~lGPll~g~i~~~tg~  445 (477)
T PF11700_consen  375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE---------AEFFGLYAITGKASSWLGPLLFGLITDATGS  445 (477)
T ss_pred             cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1123556677666689999999999999999999887643         45777  4566777889999988886    5


Q ss_pred             chhHhHHHHHHHHHHHHHHHh
Q 037418          155 WKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       155 ~~~~F~i~~v~~~i~~iif~~  175 (427)
                      .+.+|..-.+.++++++++..
T Consensus       446 ~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  446 QRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHhh
Confidence            899999888888888877753

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.19  E-value=2.9e-05  Score=81.06  Aligned_cols=159  Identities=7%  Similarity=-0.016  Sum_probs=98.1

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHH-HHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh---hhcCCCCCCC
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFW-GTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV---SYEYKPECIG   82 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~-~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~---~~~~~~~~~~   82 (427)
                      +.++.. ....|+.+.+|++..+++.+..... ....+..+++|+++||+ |++|.+.++.++..+.   ...+..   .
T Consensus       237 ~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~---~  312 (491)
T PRK11010        237 GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSI---T  312 (491)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence            333444 5667777789999999999875444 56778899999999995 9999887776654431   111110   0


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHh
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRF  159 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F  159 (427)
                      ..+...+.....+..+..|..-+...++..+..+++-+..      ....+ +...++|..+++.+.+++.   ||+..|
T Consensus       313 ~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t------~~gl~-~s~~~lg~~~~~~~~G~l~~~~G~~~~f  385 (491)
T PRK11010        313 DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSAT------QFALL-SALSAVGRVYVGPVAGWFVEAHGWPTFY  385 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            1122333334444333333333444555555554432211      12223 5667889887777777765   999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 037418          160 GIPAIFTVVATLVFLSGT  177 (427)
Q Consensus       160 ~i~~v~~~i~~iif~~~~  177 (427)
                      .+.++..+++++.....+
T Consensus       386 ~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        386 LFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            988888888877665543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.17  E-value=1.5e-05  Score=81.45  Aligned_cols=158  Identities=16%  Similarity=0.017  Sum_probs=91.0

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGE   83 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~   83 (427)
                      -+.+|++. -+-.|+.+.+|++..+++...........+..+++|+++||+ |||+.+.++..+..+ ..+.... ....
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~-~~~~  333 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSA-LQNV  333 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHH-HHcC
Confidence            35677777 677888888999999988888777776677778889999995 999988877655433 1111100 0001


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHH-HHHHHhhhhceec--c-chh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVL-VPIIALIAFPYIK--P-WKI  157 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNi-G~~i~~~~~~~l~--g-~~~  157 (427)
                      .+.......+.+...+.+...+...++..|.++++.         |.....  |...|+ +...++.+.+++.  | |..
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~---------r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~  404 (432)
T PRK10406        334 SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV---------RALGVGLSYAVANALFGGSAEYVALSLKSIGMETA  404 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc---------cchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcH
Confidence            111111111111222333333456677889887643         344444  444343 2223556556555  4 666


Q ss_pred             HhHHHHHHHHHHHHHHH
Q 037418          158 RFGIPAIFTVVATLVFL  174 (427)
Q Consensus       158 ~F~i~~v~~~i~~iif~  174 (427)
                      .|...++..+++.+..+
T Consensus       405 ~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        405 FFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66665555555554433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.16  E-value=1.2e-05  Score=81.84  Aligned_cols=161  Identities=17%  Similarity=0.084  Sum_probs=101.4

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCch
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQ   85 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~   85 (427)
                      +++++.. ....|++..++ +..+++.+.........++.++.|+++||+ |||+++.++..+..+.......   ...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~---~~~~  310 (437)
T TIGR00792       236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFF---AGSN  310 (437)
T ss_pred             HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH---cchh
Confidence            4444444 44455554555 455566666666677778888999999995 9999999988776652211110   0123


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch----
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK----  156 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~----  156 (427)
                      .+.+.+...+.++|.|...+...++.+|..+.++.+.  .++.....+.  .+..++|..+++.+.+++-   ||.    
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~  388 (437)
T TIGR00792       311 LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKT--GVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAA  388 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCc
Confidence            4455667778889999999999999999876432110  0011223333  5678888888887777663   553    


Q ss_pred             ----------hH-hHHHHHHHHHHHHHHH
Q 037418          157 ----------IR-FGIPAIFTVVATLVFL  174 (427)
Q Consensus       157 ----------~~-F~i~~v~~~i~~iif~  174 (427)
                                +. ..+|+++.+++++++.
T Consensus       389 ~~~~~~~~~~~~~~~~p~i~~~~~~~~~~  417 (437)
T TIGR00792       389 QSPITLNGIKILMFAVPALFLLLAAIIIG  417 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      22 3466677777766554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00897 2A0118 polyol permease family

Probab=98.15  E-value=5.2e-05  Score=76.77  Aligned_cols=156  Identities=11%  Similarity=0.004  Sum_probs=100.1

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHH-HHHHHHH---hhhcCCC
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLV-SSLAYSA---VSYEYKP   78 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~-g~~~~~~---~~~~~~~   78 (427)
                      +.-.++|++. -+-.|+ +++|++..+++.+.........+..++.|+++||+ |||+.+.. +.+...+   .+... +
T Consensus       233 ~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~~~l~~~-~  309 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFTLALYYI-P  309 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHH-H
Confidence            3445677777 566676 45899999999888888888889999999999995 98887642 2222222   11111 0


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---  153 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---  153 (427)
                      .. ...+.+..++...+.+++.+..-|. .+...+. +++   +      +.+.+.  +...++|..+++.+.+++-   
T Consensus       310 ~~-~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~---~------~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  377 (402)
T TIGR00897       310 QH-FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APK---H------KGAAMSVLNLSAGLSAFLAPAIAVLFIGFF  377 (402)
T ss_pred             Hc-cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-Ccc---h------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            00 0123444555666677777766443 3444443 222   1      344444  7888999999998887765   


Q ss_pred             cchhHhHHHHHHHHHHHHHHH
Q 037418          154 PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif~  174 (427)
                      ||...|.+.++..+++.++..
T Consensus       378 g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       378 GAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            888888877777666655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.15  E-value=1e-05  Score=88.04  Aligned_cols=125  Identities=12%  Similarity=0.039  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccC
Q 037418           36 FFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQM  115 (427)
Q Consensus        36 ~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~  115 (427)
                      +......+..+++|+++||+ |||++++++.++..+....+.  .  ..+...+++...+.+...+...+...++.+|.|
T Consensus       603 l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~--~--~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       603 LGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLS--F--GNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH--H--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455678889999999995 999999888877776222111  0  112233444445566666667778889999998


Q ss_pred             CcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchhHhHHHHHHHHHHHHHHH
Q 037418          116 TDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       116 ~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~~F~i~~v~~~i~~iif~  174 (427)
                      +.+.         |.+++.  +...++|+++|+.+++++.  +....|.++++.++++.++.+
T Consensus       678 Pt~~---------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       678 PSDK---------RATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             CHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            7642         455666  8899999999999988664  556677777777777665544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.14  E-value=4.8e-05  Score=76.47  Aligned_cols=153  Identities=14%  Similarity=-0.022  Sum_probs=109.1

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCch
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQ   85 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~   85 (427)
                      .+++++. .+..|+++ +|.+..+++.+.+.......+..++.|.+.||+ |+++.+.++.+.+.+......    ...+
T Consensus       219 ~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~----~~~~  292 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIG----AIEA  292 (382)
T ss_pred             HHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHH----hHhh
Confidence            4555555 67788865 899999999998887777778888999999995 999999999988887221111    0234


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHH
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIP  162 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~  162 (427)
                      .+.++..-.+.+++.|..-+....++.|+ ++++      +...+..|+-.+..+|..+++.+++++.   |+ ..|.+.
T Consensus       293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~  364 (382)
T TIGR00902       293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM  364 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence            56677778899999999999999999875 4332      1112333322356788999999999886   65 456666


Q ss_pred             HHHHHHHHHHH
Q 037418          163 AIFTVVATLVF  173 (427)
Q Consensus       163 ~v~~~i~~iif  173 (427)
                      ++..++++++.
T Consensus       365 ~~~~~~~~~~~  375 (382)
T TIGR00902       365 AIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHH
Confidence            66656665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.14  E-value=4.3e-05  Score=78.86  Aligned_cols=144  Identities=10%  Similarity=0.035  Sum_probs=86.5

Q ss_pred             HhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcC--CCCCCCCchhHHHHHHHHH
Q 037418           18 YLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEY--KPECIGEGQKILFYTALGL   95 (427)
Q Consensus        18 yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l   95 (427)
                      ++.+.+|++...+............+..+++|+++||+ |||+.++.+.++..+....+  .. .. .........++.+
T Consensus       296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~-~~-~~~~~~~~~~~~~  372 (479)
T PRK10077        296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAF-YT-QAPGIVALLSMLF  372 (479)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHH-hc-CcccHHHHHHHHH
Confidence            34456788877777666666667778889999999995 99999999888776621111  10 00 1111122334444


Q ss_pred             HHhhccc-ccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhc------eec---cchhHhHHHH
Q 037418           96 IAFGMSG-HLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFP------YIK---PWKIRFGIPA  163 (427)
Q Consensus        96 i~~g~g~-~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~------~l~---g~~~~F~i~~  163 (427)
                      .+.+.+. .-|+..++..|.++++.         |.....  +...++|..+++.+.+      ++.   ||+..|.+.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~e~~p~~~---------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  443 (479)
T PRK10077        373 YVAAFAMSWGPVCWVLLSEIFPNAI---------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG  443 (479)
T ss_pred             HHHHHhccccchhHHHhHhhCChhH---------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHH
Confidence            4444443 45778888898875432         333333  5666667666644433      332   6777777766


Q ss_pred             HHHHHHHHHH
Q 037418          164 IFTVVATLVF  173 (427)
Q Consensus       164 v~~~i~~iif  173 (427)
                      +..+++.+..
T Consensus       444 ~~~~~~~~~~  453 (479)
T PRK10077        444 CMGVLAALFM  453 (479)
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.13  E-value=3.2e-05  Score=77.71  Aligned_cols=148  Identities=10%  Similarity=-0.052  Sum_probs=94.4

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALG   94 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (427)
                      +..|+++.+|++..+++.+.........+..++.|+++||+ |+++.+.++..+..+....+.. .  ..+.+...+...
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~  297 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFF-F--GGMKTASLIFAF  297 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHH-H--HhhHHHHHHHHH
Confidence            45677777899999999999999999999999999999995 9999998887766552211100 0  112233344444


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec----cchhHhHHHHHHHHHHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~i~~  170 (427)
                      +.+.|.++.-+.......+...+  ++.      ..........++|..+|+.+++++-    ||+..|.++++...++.
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~  369 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKG--GEL------LGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM  369 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCc--chH------HHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence            55555544444333333333222  111      2222224566889999998888764    79999988877666555


Q ss_pred             HHHH
Q 037418          171 LVFL  174 (427)
Q Consensus       171 iif~  174 (427)
                      ....
T Consensus       370 ~~~~  373 (382)
T PRK10091        370 SSLL  373 (382)
T ss_pred             HHHH
Confidence            4443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.12  E-value=2.4e-05  Score=82.11  Aligned_cols=137  Identities=21%  Similarity=0.108  Sum_probs=106.9

Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHHHHhhc
Q 037418           22 VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGLIAFGM  100 (427)
Q Consensus        22 ~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~li~~g~  100 (427)
                      ....+...++...+.|.....+++++.|.++|+ +|||++++++.+++.+ .+....     ..+.+.+.+...+.+++.
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~-----a~~~~~~~~~Rfl~G~~~  185 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAF-----APNYWMFLIFRFLSGFFG  185 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHhhc
Confidence            455677888888899999999999999999999 8999999999999887 322221     356788999999999999


Q ss_pred             ccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec-cchhHhHHHHHHHHHHHHH
Q 037418          101 SGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK-PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       101 g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~-g~~~~F~i~~v~~~i~~ii  172 (427)
                      ++...+...+++|.+.++..      . ....+ +.....|+.+++...+++- +|++.+.+..+..++.++.
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R------~-~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQR------G-LALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             cchhHHhHhhheeecCcchh------h-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876531      1 12222 4566667777777777766 9999999877776666555

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.12  E-value=0.00097  Score=70.56  Aligned_cols=144  Identities=11%  Similarity=0.062  Sum_probs=90.6

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGL   95 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l   95 (427)
                      .|+.+++|-++. ...+.+.+....-+..++.|-++|. +|||+.++.+.+++++ .+....     ..+...+..|.++
T Consensus        68 ~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~at-----A~~~~~~iag~~l  140 (599)
T PF06609_consen   68 PYINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCAT-----AQNMNTFIAGMVL  140 (599)
T ss_pred             HHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhc-----CCcHHHHHHHHHH
Confidence            567778887644 4455566666667777778999998 5999999999999988 333222     3456678889999


Q ss_pred             HHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee--c-cchhHhHHHHHHHHHHHHH
Q 037418           96 IAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI--K-PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus        96 i~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l--~-g~~~~F~i~~v~~~i~~ii  172 (427)
                      .++|.|...- ....++|..+.+.       |.....+..+..-+...+++.++..+  + +|||.|.+.++...++++.
T Consensus       141 ~GvgaG~~~~-~~~~isEl~p~k~-------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  141 YGVGAGVQEL-AALAISELVPNKW-------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHhhHHHHH-HHHHHHHhcccch-------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            9999888764 4455777764321       11111111111111111222222222  2 9999999998887777755


Q ss_pred             HHh
Q 037418          173 FLS  175 (427)
Q Consensus       173 f~~  175 (427)
                      ..+
T Consensus       213 ~~~  215 (599)
T PF06609_consen  213 IFF  215 (599)
T ss_pred             HHH
Confidence            433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.10  E-value=7.9e-05  Score=74.61  Aligned_cols=152  Identities=16%  Similarity=0.079  Sum_probs=97.7

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALG   94 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (427)
                      +..|+++..|++....+.++..|.....+..++||.++||  +.++++.....+..+.+..+..   ...+.+.....+.
T Consensus       234 i~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~---~~~~~~~~~~~~~  308 (394)
T COG2814         234 IRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTF---TGASPALALALLF  308 (394)
T ss_pred             HHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHH
Confidence            4566777889999999999999999999999999999999  8999988886666652211110   0223344444455


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH----HHHHHHHHHHHhhhhceeccchhHhHHHHHHHHHHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS----FCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~----Y~~iNiG~~i~~~~~~~l~g~~~~F~i~~v~~~i~~  170 (427)
                      +.+++.+..-.....-.++ ..+++++       .....|    +.+|.+|+.+|..+... .||.....++++..+++.
T Consensus       309 ~wg~a~~~~~~~~~~~~a~-~~p~~~~-------~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~  379 (394)
T COG2814         309 LWGFAFSPALQGLQTRLAR-LAPDAAD-------LAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLAL  379 (394)
T ss_pred             HHHHHhhhhhhHHHHHhcc-cCCCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHH
Confidence            5555555444444444444 2223322       233333    45555555555443333 288888999999999998


Q ss_pred             HHHHhcccce
Q 037418          171 LVFLSGTCSY  180 (427)
Q Consensus       171 iif~~~~~~~  180 (427)
                      ++.+..+++.
T Consensus       380 ~~~~~~~~~~  389 (394)
T COG2814         380 LLALLSARKD  389 (394)
T ss_pred             HHHHHHHhcc
Confidence            8877665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.09  E-value=0.0014  Score=66.60  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=72.7

Q ss_pred             HHHHhHH--HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            7 FAAYAMW--VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         7 fs~Yg~~--~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      |.-+|..  -+.+|+.+ .|+|..|.+.+.+.......+.|++-|++|||+..++|.+.+..++..+.+.....    ..
T Consensus        15 f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~----~~   89 (400)
T PF03825_consen   15 FFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF----SS   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH----hc
Confidence            5556665  57888875 68999999999999999999999999999999867788777766665552211110    12


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCC
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMT  116 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~  116 (427)
                      +.+.++..+.+..+.....-|...++.-+..+
T Consensus        90 ~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   90 SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            34455555666666666666666665555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.06  E-value=0.00068  Score=67.73  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=110.8

Q ss_pred             hHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhh-cCCCCCCCCchhH
Q 037418           11 AMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSY-EYKPECIGEGQKI   87 (427)
Q Consensus        11 g~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~-~~~~~~~~~~~~~   87 (427)
                      -+. .+..++.+++|+|+.|.+.+..+=.....+.-++=|++.||+ |.|++-.++.++..+ .+- ....   ...+.+
T Consensus        31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~---~~~~~~  106 (417)
T COG2223          31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAV---TYPSTW  106 (417)
T ss_pred             HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHc---cCCchH
Confidence            344 788999999999999999999999999999999999999996 878877788777666 111 1110   012224


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-HHHHHHHHHHHhhhhceec---c---chhHhH
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-FCGVVLVPIIALIAFPYIK---P---WKIRFG  160 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y~~iNiG~~i~~~~~~~l~---g---~~~~F~  160 (427)
                      .+++.-.+++++-|-+. .-.++...-|++++.         -.... |-.-|+|..+...+.|++.   |   |+..-.
T Consensus       107 ~ll~~gll~G~~GasFa-v~m~~~s~~fP~~~q---------G~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~  176 (417)
T COG2223         107 QLLVIGLLLGLAGASFA-VGMPNASFFFPKEKQ---------GLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAG  176 (417)
T ss_pred             HHHHHHHHHhcccceeh-cccccccccCChhhh---------hHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45544455666655554 334566677876542         12222 6688999999999998886   7   888988


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 037418          161 IPAIFTVVATLVFLSGT  177 (427)
Q Consensus       161 i~~v~~~i~~iif~~~~  177 (427)
                      +..+.++++.+.+++..
T Consensus       177 i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         177 IYVVALAIAAVLAWLGM  193 (417)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88999988888877653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.06  E-value=8.4e-05  Score=76.50  Aligned_cols=124  Identities=10%  Similarity=0.020  Sum_probs=86.3

Q ss_pred             HHHHHhhH-hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCC-CCCCCCchhHHH
Q 037418           14 VMITYLTN-VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYK-PECIGEGQKILF   89 (427)
Q Consensus        14 ~l~~yl~~-~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~-~~~~~~~~~~~~   89 (427)
                      .+...+.+ ++|++.+|.+.+.+++....-++.+..|++.||+ |.||++.++.++..+..  .... .+  ...+++.+
T Consensus        55 ~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~--~~~s~~~l  131 (462)
T PRK15034         55 AVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQN--PNTPFGIF  131 (462)
T ss_pred             HHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHH
Confidence            56677665 7999999999999988888888888899999996 99999988888876511  1110 00  01356778


Q ss_pred             HHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-H-HHHHHHHHHHhhhhc
Q 037418           90 YTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-F-CGVVLVPIIALIAFP  150 (427)
Q Consensus        90 ~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y-~~iNiG~~i~~~~~~  150 (427)
                      ++...+.++| |..-+.....+.+.+++++         +..... + ..-|+|..++..+.+
T Consensus       132 li~r~l~Gig-g~~f~~~~~~vs~wfp~~~---------rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        132 IVIALLCGFA-GANFASSMGNISFFFPKAK---------QGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHH-HHhHHHHHHHHHHHCCHhH---------hHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8888888888 5566778888888886543         222333 2 345666655544443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.05  E-value=3.9e-05  Score=78.40  Aligned_cols=140  Identities=12%  Similarity=0.022  Sum_probs=99.5

Q ss_pred             hHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhh--cCCCCC
Q 037418            4 ADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSY--EYKPEC   80 (427)
Q Consensus         4 ~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~--~~~~~~   80 (427)
                      ...+++.-+. .+.+|.+..+|.++ ..+.+..+......+..++.++++||+ ||+|++..+..++.+...  .+.+  
T Consensus       236 ~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~--  311 (428)
T PF13347_consen  236 LQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFLG--  311 (428)
T ss_pred             HHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHHH--
Confidence            3444555555 67788888888884 445556666777777888889999995 999999999988887211  1111  


Q ss_pred             CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhcee
Q 037418           81 IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        81 ~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l  152 (427)
                        ..+.+.+++...+.++|.|...+...++.+|..|.++-+.   .++++..+.   -+...+|..++..+.+.+
T Consensus       312 --~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~t---g~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  312 --PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKT---GRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             --hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhc---CCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence              1467788899999999999999999999999887543221   122333333   667788888887766654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.04  E-value=4.4e-05  Score=78.81  Aligned_cols=137  Identities=12%  Similarity=0.029  Sum_probs=95.7

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      -+++++.. .+..|+++.+|++..+++.+.........++.++.|++.||+ |||+.+.++..+..+....+........
T Consensus       268 ~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~  346 (485)
T TIGR00711       268 GLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGFYWRAFTFTPDT  346 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            35667777 788899999999999999999888888889999999999995 9999998887776652111100000122


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      +.+.+.....+.++|.|..-+.......+..++++         +.....  ....++|..+|+.+.+.+
T Consensus       347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK---------IARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667888899999887777776666654332         222332  566788888776665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.03  E-value=5.4e-05  Score=77.96  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=88.4

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhccc-chHHHH-HHHHHHHHHhhhc--CCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTII-GNYWML-LVSSLAYSAVSYE--YKPECI   81 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~l-Gr~~~i-~~g~~~~~~~~~~--~~~~~~   81 (427)
                      +.+|++. .+..|+++..|++..+++.+...+.....+..+++|+++||+- ||++.. .+...+..+.+..  ..+   
T Consensus       267 ~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~---  343 (452)
T PRK11273        267 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP---  343 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc---
Confidence            3446666 6778888889999999988888888877888999999999963 444432 2222222221111  110   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHH-Hhhhhceec---cc
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPII-ALIAFPYIK---PW  155 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i-~~~~~~~l~---g~  155 (427)
                       ..+.+....++.+++.+....-+....+..|.++++.         +.+...  ....++|+.+ ++.+.+++.   ||
T Consensus       344 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~  413 (452)
T PRK11273        344 -AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  413 (452)
T ss_pred             -ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh---------hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence             1122223333333333222211122334456554432         223333  4556787654 688877775   99


Q ss_pred             hhHhHHHHHHHHHHHHHHH
Q 037418          156 KIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~  174 (427)
                      +.+|.+.++..+++++...
T Consensus       414 ~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        414 DGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999887777666654433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.02  E-value=4e-05  Score=80.40  Aligned_cols=124  Identities=15%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhHHHHHHHHHHHhhccccccc
Q 037418           29 RAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVS  106 (427)
Q Consensus        29 ~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~  106 (427)
                      +-+.+.+.+...+.+..++.|.++|++ |||++++++.+++.+  .+...      ..+...+.+|..+.++|.|+....
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~------a~~~~~l~~GR~l~G~g~G~~~~~  162 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIAL------APSWYQLIVGRILTGLGVGGASVL  162 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhccchhhhhhc
Confidence            347888888889999999999999995 999999999999988  22222      236788999999999999999988


Q ss_pred             ccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec----cchhHhHHHHHHH
Q 037418          107 IGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFT  166 (427)
Q Consensus       107 ~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~  166 (427)
                      ++-+++|.-+++.      |....+.+ .+.+++|.+++..+....+    +|+..+++..+..
T Consensus       163 ~piy~sEiap~~~------RG~l~~~~-~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~  219 (513)
T KOG0254|consen  163 APVYISEIAPAHI------RGTLVSLY-QLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPA  219 (513)
T ss_pred             chhhHhhcCChhh------hHHHHHHH-HHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHH
Confidence            8888888643321      22233333 6888899999966666664    6887776544443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.02  E-value=6.7e-05  Score=74.90  Aligned_cols=154  Identities=23%  Similarity=0.252  Sum_probs=99.5

Q ss_pred             HhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhccc-chHHHHHHHHHHHHH-hhhcC--CCCCCCCc
Q 037418           10 YAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTII-GNYWMLLVSSLAYSA-VSYEY--KPECIGEG   84 (427)
Q Consensus        10 Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~l-Gr~~~i~~g~~~~~~-~~~~~--~~~~~~~~   84 (427)
                      ||+. =.-+|+.+..|+|..+|+..++.|--.....+++.||++|+++ |||....+...+... .+...  .+    ..
T Consensus       269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~----~~  344 (448)
T COG2271         269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP----NG  344 (448)
T ss_pred             HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC----Cc
Confidence            5666 5678999999999999999999999999999999999999999 777655444333322 22221  11    23


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-HHHHHHHHHHHhhhhceec---cchhHhH
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-FCGVVLVPIIALIAFPYIK---PWKIRFG  160 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y~~iNiG~~i~~~~~~~l~---g~~~~F~  160 (427)
                      +..+..+.+.++++-.-+-.--+.....|.-+++.       .-...+|. -++-=+|+..+....+++.   ||..+|.
T Consensus       345 ~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A-------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi  417 (448)
T COG2271         345 SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA-------AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFI  417 (448)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh-------ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHH
Confidence            44555555555555444443333333344433221       11345666 4444458888888888885   9998887


Q ss_pred             HHHHHHHHHHHHHH
Q 037418          161 IPAIFTVVATLVFL  174 (427)
Q Consensus       161 i~~v~~~i~~iif~  174 (427)
                      +-.++.+++.+.++
T Consensus       418 ~~~~~a~l~~lll~  431 (448)
T COG2271         418 VLSIAALLAILLLL  431 (448)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66555555555444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.01  E-value=0.00015  Score=72.22  Aligned_cols=150  Identities=7%  Similarity=-0.094  Sum_probs=87.7

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGL   95 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l   95 (427)
                      .|+.+..|++..+++.+.........+..+++|+++||+ ||||++.++..+..+ .+....... ...+.+...++..+
T Consensus       219 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  296 (377)
T PRK11102        219 FVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVSAL-LDLGFWALVVGVAA  296 (377)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence            456677899999999999999999999999999999995 999999988766443 111100000 01123344455555


Q ss_pred             HHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec-cchhHhHHHHHHHHHHHHHHH
Q 037418           96 IAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK-PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus        96 i~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~-g~~~~F~i~~v~~~i~~iif~  174 (427)
                      ...+.+...++......|..++...       ...+..+.....+|+.+++.+..... +++..+.+.+++.+.+.+.++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (377)
T PRK11102        297 FVGCVSMISSNAMAVILDEFPHMAG-------TASSLAGTLRFGIGAIVGALLSLAPFTSAWPMVWSMAFCSILSILFYL  369 (377)
T ss_pred             HHHHHHHhhHHHHHHHhccccccch-------HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666666665442211       11222222334467777766544333 333334444455455544444


Q ss_pred             h
Q 037418          175 S  175 (427)
Q Consensus       175 ~  175 (427)
                      .
T Consensus       370 ~  370 (377)
T PRK11102        370 Y  370 (377)
T ss_pred             H
Confidence            3

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.00  E-value=5.8e-05  Score=75.26  Aligned_cols=158  Identities=14%  Similarity=0.001  Sum_probs=96.1

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCC-CCCCC
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKP-ECIGE   83 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~-~~~~~   83 (427)
                      +|-|+. -+..|+++++|.+..+|+.+...+....-+.-.+||+||||+ |.+|...+....+.+  .+....+ .....
T Consensus       233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~  311 (417)
T COG2223         233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLFLTGFGHG  311 (417)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHccccccccC
Confidence            466788 899999999999999999999999999999999999999996 666666665555554  2222211 11111


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec----cchhHh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK----PWKIRF  159 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~----g~~~~F  159 (427)
                      .+...++.....+.+-.|.=+..+..++-..++++..        --.++-=..-++|.+.=|...+...    +++.+|
T Consensus       312 ~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G--------~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f  383 (417)
T COG2223         312 GSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETG--------AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAF  383 (417)
T ss_pred             cchHHHHHHHHHHHHHhccCcchheeechHHHHhhhh--------HHHHHHHHhccccccchhHHHHHHHHhcccHHHHH
Confidence            3334444444444444554444455555544433211        0111112334555554444444443    488888


Q ss_pred             HHHHHHHHHHHHHHH
Q 037418          160 GIPAIFTVVATLVFL  174 (427)
Q Consensus       160 ~i~~v~~~i~~iif~  174 (427)
                      .+-....+++.+...
T Consensus       384 ~~~~~~~~~a~v~~~  398 (417)
T COG2223         384 MLLLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777666665544

>PRK10133 L-fucose transporter; Provisional

Probab=97.99  E-value=5.9e-05  Score=77.50  Aligned_cols=142  Identities=14%  Similarity=0.046  Sum_probs=99.1

Q ss_pred             HHHHHh-hHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhHHHH
Q 037418           14 VMITYL-TNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl-~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~~   90 (427)
                      -+..|+ ++.+|++..+++..+..+.....+..+++|++.||+ |+||++..+..+..+.  +..+.     . .. .-.
T Consensus       280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~-----~-~~-~~~  351 (438)
T PRK10133        280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFA-----G-GH-VGL  351 (438)
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHc-----C-Ch-HHH
Confidence            345565 567899999999999999999999999999999995 9999998887665542  11111     1 11 224


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---c-chhHhHHHHHHH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---P-WKIRFGIPAIFT  166 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g-~~~~F~i~~v~~  166 (427)
                      .++.+.++|.|.+.|++.+...+..+++...       -.+... + .-+|..+++.+.+++.   | -+.+|.++.++.
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~-------as~l~~-~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~  422 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQDTKY-------GSSFIV-M-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchhhcc-------chhHHh-H-HhccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            5678899999999999999999987653211       122332 1 2245556666666664   5 678888777766


Q ss_pred             HHHHHH
Q 037418          167 VVATLV  172 (427)
Q Consensus       167 ~i~~ii  172 (427)
                      +.....
T Consensus       423 ~~~~~~  428 (438)
T PRK10133        423 AVIFIF  428 (438)
T ss_pred             HHHHHH
Confidence            544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.98  E-value=0.00011  Score=73.89  Aligned_cols=156  Identities=13%  Similarity=-0.010  Sum_probs=96.2

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHH-HHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCC-CCCC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWG-TVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYK-PECI   81 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~-~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~-~~~~   81 (427)
                      +.+..+.. ....|+.+ +|++..+.+.+...... ...+..+++|+++||+ |++|.+.++..+..+ .+.... ....
T Consensus       221 ~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~~  298 (390)
T TIGR02718       221 AMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFAQAAFW  298 (390)
T ss_pred             HHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444455 56678875 79999999998887765 4456688999999995 999999887765522 111000 0000


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cch
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWK  156 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~  156 (427)
                      ........+....+.+++.|...+...+...+..++++.        +.+.+.  ....++|..+++.+++++.   ||+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~  370 (390)
T TIGR02718       299 LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ--------AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYA  370 (390)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence            001122222223333445566666666666665443111        223333  4566999999999988886   898


Q ss_pred             hHhHHHHHHHHHHHH
Q 037418          157 IRFGIPAIFTVVATL  171 (427)
Q Consensus       157 ~~F~i~~v~~~i~~i  171 (427)
                      ..|.++++..+++.+
T Consensus       371 ~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       371 GGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899887776666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.97  E-value=0.00011  Score=74.89  Aligned_cols=149  Identities=6%  Similarity=-0.082  Sum_probs=87.2

Q ss_pred             hhHHHHHHhHH-HHHHHhhH-hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHH-HHHHHHHHHHhhhcCCCC
Q 037418            3 WADIFAAYAMW-VMITYLTN-VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWM-LLVSSLAYSAVSYEYKPE   79 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~-~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~-i~~g~~~~~~~~~~~~~~   79 (427)
                      ++.-.+++++. -+-.|+++ ..|++..+++...........+..+++|+++||+ |||+. +....++..+.+..... 
T Consensus       252 ~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~~~~~~-  329 (412)
T TIGR02332       252 FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGWLLASA-  329 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHHHHHHh-
Confidence            34455677777 67788876 3577888888888888888889999999999995 76664 33333333321111110 


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----
Q 037418           80 CIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----  153 (427)
Q Consensus        80 ~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----  153 (427)
                         ..+....+.++.+.+.|....-+.......+.+++   ++      +...+.  +...|+|.++++.+.+.+.    
T Consensus       330 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~------~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       330 ---TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL---QA------RAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             ---cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccch---HH------HHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence               01112222233333333322212222222333322   11      344444  7888999999998888776    


Q ss_pred             cchhHhHHHHHH
Q 037418          154 PWKIRFGIPAIF  165 (427)
Q Consensus       154 g~~~~F~i~~v~  165 (427)
                      +|+.+|.++++.
T Consensus       398 ~~~~~~~~~~~~  409 (412)
T TIGR02332       398 SFNSGLWFVAAL  409 (412)
T ss_pred             CCchhHHHHHHH
Confidence            599998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00036  Score=71.94  Aligned_cols=134  Identities=14%  Similarity=0.136  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccc
Q 037418           31 AAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGG  109 (427)
Q Consensus        31 ~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~  109 (427)
                      +.+++.|.....++.+++|++|||+ |||++++++.++..+ .+.....  ........+.+|..+.++..|......+-
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s--~~~~~~e~li~GR~i~Gl~~gl~~~~~pm  139 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLS--KSAPSFEMLILGRLIVGLACGLSTGLVPM  139 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3455666667778888999999996 999999999888776 2221110  01235668889999999999999999999


Q ss_pred             hhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh-c-eec---cchhHhHHHHHHHHHHHHHHH
Q 037418          110 FMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAF-P-YIK---PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       110 ~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~-~-~l~---g~~~~F~i~~v~~~i~~iif~  174 (427)
                      ++.|.-+++-      |. .-+.++-.++++|.+++..++ + .++   .|++.++.+.+...+.++...
T Consensus       140 yl~E~sP~~~------RG-~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~  202 (485)
T KOG0569|consen  140 YLTEISPKNL------RG-ALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLP  202 (485)
T ss_pred             HHhhcChhhh------cc-HHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            9998654432      11 223333688889998884443 2 232   799999988887666665543

>TIGR00895 2A0115 benzoate transport

Probab=97.95  E-value=8.1e-05  Score=74.03  Aligned_cols=132  Identities=17%  Similarity=0.027  Sum_probs=91.1

Q ss_pred             HHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 037418            7 FAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQK   86 (427)
Q Consensus         7 fs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~   86 (427)
                      +++++......|+.+.+|++..+++.+.........++.+++|+++||+ ||++.+................    ..+.
T Consensus       264 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~  338 (398)
T TIGR00895       264 VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVLVGST----LFSP  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHH----hhCH
Confidence            3444444222366678899999999999999999999999999999995 8885544333333221111100    1234


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      +..+....+.+++.+...+...+...|.++++.         +...++  +...++|..+++.+.+++
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI---------RATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---------HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            556677788889999999999999999876532         334444  667789999888887764

>PRK10504 putative transporter; Provisional

Probab=97.95  E-value=0.00014  Score=74.93  Aligned_cols=136  Identities=14%  Similarity=0.031  Sum_probs=90.0

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hh-cCCCCCCC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SY-EYKPECIG   82 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~-~~~~~~~~   82 (427)
                      .+++.... ...+|++..+|.+..+++.+.........+..++.|.++||+ |||+++..+..+..+. +. ...+   .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---~  349 (471)
T PRK10504        274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLVA---L  349 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhcc---c
Confidence            34443333 566777777999999999888877777777778899999996 9999999888766652 11 1111   0


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l  152 (427)
                      ....+.+...+.+.++|.|..-+...++..+..++++.      ....+.+ ....++|..+|+.+++.+
T Consensus       350 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~-~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        350 LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLA------SSGNSLL-SMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhc------cchHHHH-HHHHHHHHHHHHHHHHHH
Confidence            12233334556667788888888878888776654321      1112222 677778888877776655

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.95  E-value=7.6e-05  Score=77.85  Aligned_cols=138  Identities=12%  Similarity=0.013  Sum_probs=97.9

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      -+++++.. .+..|+++..|++..+++...........+..+++|++.||+ |+|+.+..|..+..+....+.. .....
T Consensus       272 ~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~~~l~~-~~~~~  349 (495)
T PRK14995        272 MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSFYGLAM-TDFST  349 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence            34677777 778899999999999999999999999999999999999995 9999888887776552211100 00012


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l  152 (427)
                      +.+..+..+.+.++|.|..-+.......+..++++..       ..........|+|..+|+.+.+.+
T Consensus       350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAA-------AAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566788899999998887877777765443311       222222577889988887666544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.94  E-value=0.0003  Score=71.13  Aligned_cols=130  Identities=10%  Similarity=-0.022  Sum_probs=85.3

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc--CCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE--YKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~   91 (427)
                      ....|+.+.+|++..+++...........+..++.|+++||+ |++|.+.++.++..+.+..  ..+ .....+.+.+.+
T Consensus       237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~  314 (406)
T PRK15402        237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALAT-VISSHAYLWLTA  314 (406)
T ss_pred             HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH-HcccccHHHHHH
Confidence            456677788999999888776666666777888999999995 9999998887765541111  100 000123445667


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ++.+.++|.|...|...+...+..+ ++      +.+..+.+ .+..++|..+|+.+.+++.
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~-~~~~~~~~~~g~~~~~~l~  368 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVSAAM-GMLSMLIFTVGIELSKHAY  368 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            8888999999888777665543322 11      11122333 5667788888888888774

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.93  E-value=4.7e-05  Score=72.15  Aligned_cols=140  Identities=13%  Similarity=0.079  Sum_probs=100.7

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALG   94 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~   94 (427)
                      -++.++++|+|.+.|+.+.+..-+.......+-|.+.|++ |+.-..+.+..+..+ .-..+.      .+.+.-|+++.
T Consensus       288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~------Ft~lsPy~~m~  360 (459)
T KOG4686|consen  288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLF------FTFLSPYTSMT  360 (459)
T ss_pred             HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHH------hhhccHHHHHH
Confidence            3577889999999999999887777777777889999996 888777666555544 222121      12334467888


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cch--hHhHHHHHHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWK--IRFGIPAIFT  166 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~--~~F~i~~v~~  166 (427)
                      ++++...+.....-++++...++++         +...|.  |...|+|-.+.+++++.+.    ||.  -+|.+....|
T Consensus       361 ~lGLsysllAcslWP~va~~vpE~q---------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~  431 (459)
T KOG4686|consen  361 FLGLSYSLLACSLWPCVASLVPEEQ---------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM  431 (459)
T ss_pred             HHhhhHHHHHHHHhhhhhhhCCHHH---------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence            8888887776667777777665543         566676  8999999999999999997    343  3566666666


Q ss_pred             HHHHH
Q 037418          167 VVATL  171 (427)
Q Consensus       167 ~i~~i  171 (427)
                      .+..+
T Consensus       432 aL~sv  436 (459)
T KOG4686|consen  432 ALTSV  436 (459)
T ss_pred             HHHHH
Confidence            55443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.92  E-value=9.7e-05  Score=72.56  Aligned_cols=133  Identities=11%  Similarity=-0.038  Sum_probs=95.5

Q ss_pred             HHHHhHH--HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            7 FAAYAMW--VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         7 fs~Yg~~--~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      +.++++.  .+..|+++.+|.+..+++.+.........+..+++|++.||+ ||++.+..+..+..+....... . .. 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~-  299 (365)
T TIGR00900       224 LVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLAILVVGL-T-PP-  299 (365)
T ss_pred             HHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHh-h-ch-
Confidence            4455554  345556666999999999999988888889999999999995 9999888776555542211110 0 01 


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      +.+.+++...+.+++.+...+...++..|..++++         +.+.++  +...++|..+++.+.+++
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL---------LGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666778888999999999999999998876533         334444  677888888888877765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.91  E-value=5.8e-05  Score=77.36  Aligned_cols=152  Identities=13%  Similarity=0.039  Sum_probs=88.6

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hh--hcCCCCCC
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VS--YEYKPECI   81 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~--~~~~~~~~   81 (427)
                      .+|++. .+..|+++..|++..+++.+...+.....++.+++|+++||+ |+++....+..+..+   .+  ....+   
T Consensus       266 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  341 (438)
T TIGR00712       266 LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWMNP---  341 (438)
T ss_pred             HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHhcC---
Confidence            345666 567888888899999999998888888899999999999996 543322223222111   11  11111   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccc--cchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHH-HHHHhhhhceec---
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSI--GGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLV-PIIALIAFPYIK---  153 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~--~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG-~~i~~~~~~~l~---  153 (427)
                       ..+.+.....+..+  |.+..-+..  .....|.+++++         +.....  +...++| .++++.+.+++.   
T Consensus       342 -~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~  409 (438)
T TIGR00712       342 -AGNPLVDMICMIVI--GFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  409 (438)
T ss_pred             -CCchHHHHHHHHHH--HHHHccHHHHHHHHHHHhcChhh---------eeeehhhhchHHHhhhhhhcchhHHHHHHhc
Confidence             11222222333333  333222322  334556554332         222333  3555666 467888877765   


Q ss_pred             cchhHhHHHHHHHHHHHHHHHh
Q 037418          154 PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      ||..+|.+.++..+++.+..+.
T Consensus       410 g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       410 GWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             cchHHHHHHHHHHHHHHHHHHH
Confidence            8999998777776666665553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.91  E-value=0.00028  Score=71.34  Aligned_cols=145  Identities=9%  Similarity=0.016  Sum_probs=92.5

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHH-HHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hh----cCCCCCCCCchhHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWG-TVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SY----EYKPECIGEGQKILFY   90 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~-~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~----~~~~~~~~~~~~~~~~   90 (427)
                      .|+.+.+|++..+.+.+...... ...+..+++|++.||+ ||+|.+.++.....+. +.    ...     ..+.+.+.
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~-----~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT-----PKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHH
Confidence            46667799999999888766554 4677789999999995 9999887776655441 11    111     11233344


Q ss_pred             HHH----HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           91 TAL----GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        91 ~~l----~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      .+.    ...+++.+..-+....++.+.+++++         . ..+ ....++|..++..+++++.   ||+..|.+.+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~-~~~-~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~  376 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQ---------Y-ALL-SALASVGRVYVGPTSGYLVEAYGWPGFYLMTV  376 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---------H-HHH-HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            333    24456666667777777777655332         1 122 2233567765555666665   9999999988


Q ss_pred             HHHHHHHHHHHhccc
Q 037418          164 IFTVVATLVFLSGTC  178 (427)
Q Consensus       164 v~~~i~~iif~~~~~  178 (427)
                      +...++.++.....+
T Consensus       377 ~~~~~~~~~~~~~~~  391 (402)
T PRK11902        377 VIALPGLALLWLMRG  391 (402)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888777766544333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.90  E-value=0.0002  Score=71.93  Aligned_cols=148  Identities=10%  Similarity=-0.063  Sum_probs=96.8

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQK   86 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~   86 (427)
                      ++.++. .+..|+. +.|++..+++.+.+.......+..++.|++.||+ |+++.+.++.....+......    ...+.
T Consensus       220 ~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~~~~----~~~~~  293 (382)
T PRK11128        220 SHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWGLMG----STTAL  293 (382)
T ss_pred             HhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHH----hhhhH
Confidence            334455 5667875 5899999999888877777777888999999995 999999888877766222111    02345


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      +.+++...+.+++.+...+....+..++ ++++      +......++-...++|..+|+.+.+++.   |+. .|...+
T Consensus       294 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~  365 (382)
T PRK11128        294 PWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMA  365 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHH
Confidence            6667778888888888888777777664 2211      1111222222445678788898888886   553 444434


Q ss_pred             HHHHHH
Q 037418          164 IFTVVA  169 (427)
Q Consensus       164 v~~~i~  169 (427)
                      +..+++
T Consensus       366 ~~~~~~  371 (382)
T PRK11128        366 LVALPA  371 (382)
T ss_pred             HHHHHH
Confidence            333333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.90  E-value=6.5e-05  Score=74.12  Aligned_cols=140  Identities=16%  Similarity=0.060  Sum_probs=85.0

Q ss_pred             HHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHH--HHHhhhcCCCCCCCCch
Q 037418            9 AYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLA--YSAVSYEYKPECIGEGQ   85 (427)
Q Consensus         9 ~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~--~~~~~~~~~~~~~~~~~   85 (427)
                      ++++. .+..|+++.+|++..+++.+...+.....+..+++|+++||..+|++........  ..+.+..... . ...+
T Consensus       232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~  309 (379)
T TIGR00881       232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL-N-PAAN  309 (379)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-C-cchh
Confidence            34455 5778888889999999999999999888999999999999865555433222111  1111111100 0 0112


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHh
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRF  159 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F  159 (427)
                      .........+.+...+..-+....+..|..+++.         +...+.  ....++|..+++.+.+++.   ||+.+|
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       310 PLMDLICLFALGFLVYGPQMLIGVIASELAPKKA---------AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch---------hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            2333344444444444444455566667665432         233444  5678899999988888776   676554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.88  E-value=0.00025  Score=70.52  Aligned_cols=106  Identities=8%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             HHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc--CCCCCCCCch
Q 037418            9 AYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE--YKPECIGEGQ   85 (427)
Q Consensus         9 ~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~--~~~~~~~~~~   85 (427)
                      ++++. .+..|+.+++|.++.+++.+.........+..+++|++.||+ |||+.+.++..+..+....  ..... ....
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  299 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITAIL-GLGS  299 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHh-ccch
Confidence            34444 455677788999999999999888888889999999999995 9999988887665551111  10000 0112


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCC
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMT  116 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~  116 (427)
                      .........+.++|.+...+...+...|..+
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  330 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP  330 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            3344555677888999988888888777654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.87  E-value=0.00021  Score=72.49  Aligned_cols=124  Identities=10%  Similarity=-0.013  Sum_probs=80.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh-hcCCCCCCCCchhHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS-YEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~   92 (427)
                      .+..|+.+ .|++..+++.+.........+..+++|+++||+ ||++.+..+.++..+.+ ..... .  .....  ..+
T Consensus       253 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~--~~~  325 (426)
T PRK12307        253 LLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI-P--QDNYL--LLG  325 (426)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH-c--cccHH--HHH
Confidence            45667765 699999999888888888889999999999995 99999988877665522 11110 0  11111  122


Q ss_pred             HHHHHh--hcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           93 LGLIAF--GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        93 l~li~~--g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ..+.++  +..+..+....++.|.++++.         +.+...  +...++|..+++.+.+++.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        326 ACLFGLMATNVGVGGLVPKFLYDYFPLEV---------RGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHhCcHHH---------HhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            222222  223333445566777776432         233333  6778889999999988886

>PRK10054 putative transporter; Provisional

Probab=97.86  E-value=0.00011  Score=74.39  Aligned_cols=148  Identities=14%  Similarity=0.034  Sum_probs=98.7

Q ss_pred             HHHHHhhH--hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTN--VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~--~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (427)
                      .+..|+..  +.+.+....+.+...+...........|.+.||+ |+++.+..+..+..+.+..+..   ...+.+.+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~  303 (395)
T PRK10054        228 CISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIF---SGNSLLLWGM  303 (395)
T ss_pred             hHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHH---cchHHHHHHH
Confidence            34455543  3455566666777777666666667778999996 9999888887766652211110   0123455566


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTV  167 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~  167 (427)
                      +..+.++|.+...|+..+++.+.-+++.         +.+.++ +...++|..+|+.+.+++.   |++..|.+-++..+
T Consensus       304 ~~~~~~~g~~~~~p~~~~~~~~~~p~~~---------~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~  374 (395)
T PRK10054        304 SAAVFTVGEIIYAPGEYMLIDHIAPPGM---------KASYFSAQSLGWLGAAINPLVSGVILTTLPPWSLFVILALAIV  374 (395)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCccc---------ceehHhHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence            7788999998888888888887654422         344555 6666789999999988886   88888877666665


Q ss_pred             HHHHHHH
Q 037418          168 VATLVFL  174 (427)
Q Consensus       168 i~~iif~  174 (427)
                      ++.+.-+
T Consensus       375 ~~~~~~~  381 (395)
T PRK10054        375 AAWLLML  381 (395)
T ss_pred             HHHHHHH
Confidence            5554444

>PRK09848 glucuronide transporter; Provisional

Probab=97.83  E-value=0.00014  Score=74.64  Aligned_cols=158  Identities=12%  Similarity=0.052  Sum_probs=97.9

Q ss_pred             HHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc--CCCCCCCCch
Q 037418            9 AYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE--YKPECIGEGQ   85 (427)
Q Consensus         9 ~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~--~~~~~~~~~~   85 (427)
                      +++.. ....|+++.+|.+...+............+..++.++++||+ |+++++.+|.++..+....  ..+    ..+
T Consensus       244 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~~~~----~~~  318 (448)
T PRK09848        244 TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFFWVS----VWS  318 (448)
T ss_pred             HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcC----chh
Confidence            33444 455667777887766555433332334556777889999995 9999999998776652211  111    224


Q ss_pred             hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHH-HH--HHHHHHHHHHHhhhhcee-c--cc----
Q 037418           86 KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFF-FS--FCGVVLVPIIALIAFPYI-K--PW----  155 (427)
Q Consensus        86 ~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~-f~--Y~~iNiG~~i~~~~~~~l-~--g~----  155 (427)
                      .+.++.++.+.++|.+...+...++.+|..|+++-+.   .++++.. ++  -++.++|..+|+.+.+.+ +  ||    
T Consensus       319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~---g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~  395 (448)
T PRK09848        319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLT---GVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQ  395 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            5566677888999999999999999998766443210   0112222 22  466778888777665543 1  43    


Q ss_pred             ----------hhHh-HHHHHHHHHHHHHHH
Q 037418          156 ----------KIRF-GIPAIFTVVATLVFL  174 (427)
Q Consensus       156 ----------~~~F-~i~~v~~~i~~iif~  174 (427)
                                +..+ .+|+++++++.+++.
T Consensus       396 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~  425 (448)
T PRK09848        396 VQTPEVIMGIRTSIALVPCGFMLLAFVIIW  425 (448)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      2232 467777766666553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.83  E-value=0.00025  Score=71.68  Aligned_cols=144  Identities=13%  Similarity=0.004  Sum_probs=96.9

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh-hcCCCCCCCCchhHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS-YEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~   92 (427)
                      .+..|+.+.+|++..+++.+.........+..++.|.+.|+. ++++.+..+..+....+ ...      ..+.+...+.
T Consensus       227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~  299 (393)
T PRK11195        227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILMGLVVLLMAL------QHSLLPAYPL  299 (393)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHHHHHHHHHHH------HhHHHHHHHH
Confidence            455688888999999999999888888888899999999985 88888877754332211 111      1234445566


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchhHhHHHHHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKIRFGIPAIFTVV  168 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~~F~i~~v~~~i  168 (427)
                      +.+.+++.|.+.+...+...+. .+++.+       +.+.+.  ....|+|..++..+.+.+.  |=+..+.+.+++.++
T Consensus       300 ~~~~G~~~g~~~~~~~~~~q~~-~~~~~~-------~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (393)
T PRK11195        300 LILIGALGGFFVVPMNALLQHR-GHVLVG-------AGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLV  371 (393)
T ss_pred             HHHHHHhhhhhhhhHHHHHHhh-Cccccc-------chhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7788899999888888887553 222110       233333  6888888888877777665  656666665555555


Q ss_pred             HHHH
Q 037418          169 ATLV  172 (427)
Q Consensus       169 ~~ii  172 (427)
                      +..+
T Consensus       372 ~~~~  375 (393)
T PRK11195        372 ALAM  375 (393)
T ss_pred             HHHH
Confidence            5444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.83  E-value=0.00056  Score=70.52  Aligned_cols=157  Identities=15%  Similarity=0.079  Sum_probs=92.7

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHH--------HHHHHHHHH--HHhh
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW--------MLLVSSLAY--SAVS   73 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~--------~i~~g~~~~--~~~~   73 (427)
                      .-+++|++. -+-.|+++.+|++..+++...........++.+++|+++||. ++++        .+..+....  .+..
T Consensus       273 ~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (465)
T TIGR00894       273 HFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFNGIGGLGPGIFA  351 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            334555655 677888889999999999998888888899999999999985 3321        111111111  1111


Q ss_pred             hcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce
Q 037418           74 YEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY  151 (427)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~  151 (427)
                      ..... .  ..+.......+.+.+.+.++..++......|..    ++.      ......  ....++|.++++.+.++
T Consensus       352 ~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~------~g~~~g~~~~~~~l~~~i~p~l~g~  418 (465)
T TIGR00894       352 YALPY-L--SAAFYLTIIILTLANAVSSGPLAGVLINSLDLA----PRF------LGFIKGITGLPGFIGGLIASTLAGN  418 (465)
T ss_pred             HHHHH-c--CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC----hhH------HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            00000 0  112222333344444444444454443333322    211      222222  67778888889888887


Q ss_pred             ec------cchhHhHHHHHHHHHHHHHHHh
Q 037418          152 IK------PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       152 l~------g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      +.      +|..+|.+.++..+++.+++..
T Consensus       419 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       419 ILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             eeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            64      3888999888888888766654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.81  E-value=0.00017  Score=82.82  Aligned_cols=137  Identities=8%  Similarity=-0.035  Sum_probs=96.2

Q ss_pred             HHHHHhhHhcCCchH-HHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHH
Q 037418           14 VMITYLTNVWKISLV-RAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~-~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      .+..|+.+.+|++.. +++.+.........++.++.|+++||+ ++++.+.++.++..+.+..+..    ..+.+.+.+.
T Consensus       254 ~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  328 (1146)
T PRK08633        254 NFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPT----APSLASVLVL  328 (1146)
T ss_pred             hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHH----hhhHHHHHHH
Confidence            567788888999999 888888888888888999999999995 8888888877766652222210    1245566677


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAI  164 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v  164 (427)
                      ..+++++.|+..+...+++.+..+++.         +.+.++  .+..++|.++++.+.+.+.    ++...|.+.+.
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~---------rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        329 FFLFGFSAGLFIVPLNALIQFRAPEKE---------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhcCCccc---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            888899999999888898887765543         233444  5667777766665555443    44445554443

>TIGR00896 CynX cyanate transporter

Probab=97.80  E-value=0.00019  Score=71.08  Aligned_cols=134  Identities=10%  Similarity=-0.011  Sum_probs=88.8

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      -+.|+++. .+..|+++ .|++..+++.+...+.....+..+++|+++||+-+|++++.++..+..+....+..   ...
T Consensus       210 ~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~  285 (355)
T TIGR00896       210 SGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF---APM  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH---hhh
Confidence            34566666 66778765 69999999999999999999999999999999645666777776665552211110   011


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      + ... ....+.++|.|...|...+...+..+++  ++      +...+.  +...++|..+++.+.+++.
T Consensus       286 ~-~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~------~g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       286 H-GLW-AWALVLGLGQGGAFPLALTLIGLRSRQA--AQ------AAALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             h-HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 111 2356788999999988877777654332  11      222333  4556777788888877765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09669 putative symporter YagG; Provisional

Probab=97.77  E-value=0.00024  Score=72.90  Aligned_cols=112  Identities=13%  Similarity=0.011  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hh-hcCCCCCCCCchhHHHHHHHHHHHhhcccccccccch
Q 037418           33 IVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VS-YEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGF  110 (427)
Q Consensus        33 ~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~  110 (427)
                      +.........+..++.++++||+ ||++++.++.....+ .+ ..+.+    ..+.+.+++...+.++|.+...+...++
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP----PSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556777889999995 999999888765553 11 11111    2345567777888999999999999999


Q ss_pred             hcccCCcchhhhhhhhhhHHH-HHH--HHHHHHHHHHHhhhhcee
Q 037418          111 MADQMTDSRAEQVSMRSAKLF-FFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus       111 ~~dq~~~~~~~~~~~~~~~~~-~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      .+|..|.++.+.   .++++. .|+  .++.++|..+|+.+++++
T Consensus       344 ~ad~~d~~e~~~---G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        344 FSDVVDYEEKRS---GRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HHhhhhhhhhhc---CcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999876433211   111222 233  667899999988877765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.76  E-value=0.00025  Score=69.34  Aligned_cols=128  Identities=19%  Similarity=0.087  Sum_probs=94.1

Q ss_pred             HHHHhHH-HHHHHhhHhcCCc-hHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKIS-LVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPECIGE   83 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~-~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~~~~~   83 (427)
                      +.++++. .+..|+.+.+|++ ..+++.+.........+..++.|+++|| +|+++.+.+......+. +.....  ...
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~  296 (352)
T PF07690_consen  220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLL--PFS  296 (352)
T ss_dssp             HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCS--HHH
T ss_pred             HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence            3555666 6778888999999 8999988999999888999999999999 59888777777666652 111110  001


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIAL  146 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~  146 (427)
                      .+....+..+.+.+++.|...+...++..|..++++         +.+.+.  ....++|..+||
T Consensus       297 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  297 SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY---------RGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHCC
Confidence            234556668888999999999999999999886543         233333  677888888875

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.75  E-value=0.00065  Score=68.70  Aligned_cols=147  Identities=8%  Similarity=0.020  Sum_probs=95.3

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hhhcCCCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VSYEYKPECIG   82 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~~~~~~~~~~   82 (427)
                      .+++++. .+..++.+++|++..+++.+...+.....+..++.|++.||. + ++.+..+..+..+   .+...      
T Consensus       230 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~-~~~l~~~~~~~~~~~~~l~~~------  301 (394)
T PRK10213        230 AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-V-KLALAGAPLVLAVSALVLTLW------  301 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHH------
Confidence            3445554 332333457899999999999988888889999999999993 4 4444444333332   11112      


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHh
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRF  159 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F  159 (427)
                      ..+.+.+..+..+.++|.+...+...+++.+..+++..+       ..+.. +...++|..+|+.+.+++.   |+...|
T Consensus       302 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~lg~~~G~~l~G~l~~~~g~~~~~  373 (394)
T PRK10213        302 GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEK-------AGSIQ-VAVIQLANTCGAAIGGYALDNIGLTSPL  373 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHhccChhhHH
Confidence            123456666778888999999988888888766533211       12222 4556788888888888775   777777


Q ss_pred             HHHHHHHHHH
Q 037418          160 GIPAIFTVVA  169 (427)
Q Consensus       160 ~i~~v~~~i~  169 (427)
                      ..+++...+.
T Consensus       374 ~~~~~~~~~~  383 (394)
T PRK10213        374 MLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHH
Confidence            7766554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.75  E-value=0.00051  Score=70.77  Aligned_cols=163  Identities=13%  Similarity=-0.025  Sum_probs=85.2

Q ss_pred             HHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh-h--cCCCCCCCCc
Q 037418            9 AYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS-Y--EYKPECIGEG   84 (427)
Q Consensus         9 ~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~-~--~~~~~~~~~~   84 (427)
                      |-|+. -+-.|+++.+  +...+............+..++||++|||+ |++|++.++.+...+.. +  ...+. ....
T Consensus       268 fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~~~~~l~lp~-~~~~  343 (462)
T PRK15034        268 FIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFSALLFLTLPG-TGSG  343 (462)
T ss_pred             HHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHhcc-cccc
Confidence            33444 4556666644  333333333344556677888999999995 99999998887666521 1  11111 1123


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcc----------hhhhhhhhhhHHHH-HHHHHH---HHHHHHHhhhhc
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDS----------RAEQVSMRSAKLFF-FSFCGV---VLVPIIALIAFP  150 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~----------~~~~~~~~~~~~~~-f~Y~~i---NiG~~i~~~~~~  150 (427)
                      +.+.+..++..+.+..|.=+..+..++.+.++++          ++++..++.+++.+ -+=+..   .+|.++-|.+.+
T Consensus       344 ~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g  423 (462)
T PRK15034        344 NFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFG  423 (462)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence            4566666666665666666666666666656531          11110001111211 111111   222233332222


Q ss_pred             ee-c---cchhHhHHHHHHHHHHHHHHHh
Q 037418          151 YI-K---PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       151 ~l-~---g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      .. +   +|..+|..-.+..++++++-+.
T Consensus       424 ~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        424 MSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            22 2   6888888888877777766554

>TIGR00901 2A0125 AmpG-related permease

Probab=97.70  E-value=0.00021  Score=70.76  Aligned_cols=113  Identities=11%  Similarity=0.046  Sum_probs=83.8

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHH-HHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc---CCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWG-TVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE---YKPE   79 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~-~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~---~~~~   79 (427)
                      -.+++++.. .+..|+++ +|++..+++.+.++... ...+..+++|+++||+ ||+|.+.++.++..+..+.   ..+.
T Consensus       221 ~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~~  298 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALTNAGFVWLASN  298 (356)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467888888 88888887 99999999988887764 4568889999999995 9999998888776652221   1100


Q ss_pred             C----CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcch
Q 037418           80 C----IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR  119 (427)
Q Consensus        80 ~----~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~  119 (427)
                      .    ....+.+.+..+..+.+++.|...+...++..+..+++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~  342 (356)
T TIGR00901       299 GHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF  342 (356)
T ss_pred             CcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc
Confidence            0    000234555566777899999999999999999887654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.68  E-value=0.00028  Score=71.14  Aligned_cols=146  Identities=12%  Similarity=0.048  Sum_probs=91.3

Q ss_pred             HHHHhhHhc---CCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHH
Q 037418           15 MITYLTNVW---KISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYT   91 (427)
Q Consensus        15 l~~yl~~~l---~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (427)
                      +..|+++.+   +.+....+.+.+.......+..+..|++.||+ |||+.+.++..++.+.......    ..+.+.+++
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~----~~~~~~~~~  312 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSF----ATTALEVVI  312 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHh----cCChHHHHH
Confidence            456776655   45555666666666666677778889999995 9999999988877662211110    123444555


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHH-HHHHHHHHHHHHHHHhhhhceec---cchhHhHHHHHHHH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKL-FFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTV  167 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~-~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~  167 (427)
                      ...+.+++.+........+..++.+++..      .... ..+ ....++|..+++.+.+++-   ||+..|.+.++..+
T Consensus       313 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~------at~~~~~~-~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~  385 (396)
T TIGR00882       313 LKMLHAFEVPFLLVGCFKYITSQFDVRLS------ATIYLIGF-QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVL  385 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcceE------EEeehHHH-HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHH
Confidence            66666666554443333444444332210      0001 113 3678999999999999885   89999998777776


Q ss_pred             HHHHH
Q 037418          168 VATLV  172 (427)
Q Consensus       168 i~~ii  172 (427)
                      ++.++
T Consensus       386 i~~~~  390 (396)
T TIGR00882       386 LFTLI  390 (396)
T ss_pred             HHHHH
Confidence            66544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.0016  Score=67.79  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=101.5

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHHHHhhcc
Q 037418           23 WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGLIAFGMS  101 (427)
Q Consensus        23 l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~li~~g~g  101 (427)
                      +++...+-+.+.++|.....++.+.+|++.||+ .-.+.+....+.-.+ .+....     .++.+.+..-..++++-.+
T Consensus        76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~-----~~s~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAA-----VHSFPGLIALRFLLGLFES  149 (495)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHhc
Confidence            566677888888999999999999999999995 755544444444333 111111     2456778888999999999


Q ss_pred             cccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcee-------c--cchhHhHHHHHHHHHHHHH
Q 037418          102 GHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYI-------K--PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       102 ~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l-------~--g~~~~F~i~~v~~~i~~ii  172 (427)
                      ..-|+....++.-|++++      +..|-.++ |.+.++|..+|.+++..+       .  ||++.|.+.++.+++..++
T Consensus       150 ~~wP~~~~~lg~wy~~~e------~g~r~~~~-~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSE------RGLRMGIW-YASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV  222 (495)
T ss_pred             ccchHHHHHHHhhcChhh------hhhhHHHH-HHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence            999999999999997654      23345555 677888888887777663       2  9999999998877665544


Q ss_pred             H
Q 037418          173 F  173 (427)
Q Consensus       173 f  173 (427)
                      .
T Consensus       223 ~  223 (495)
T KOG2533|consen  223 V  223 (495)
T ss_pred             E
Confidence            3

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.0011  Score=65.25  Aligned_cols=148  Identities=14%  Similarity=0.128  Sum_probs=117.1

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALG   94 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (427)
                      +..=+++++|+|.++|+.+.+.=....-++.+++.+++-| +|..|++.++.++..+....-.     ..+.+.++.+..
T Consensus        34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~-----~~~~~~L~~gt~  107 (395)
T COG2807          34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRS-----LGGLPLLFLGTL  107 (395)
T ss_pred             hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHH
Confidence            4455677899999999999988777777888899999988 5999999999888776332111     124678889999


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec----cchhHhHHHHHHHHHHH
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK----PWKIRFGIPAIFTVVAT  170 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~~~i~~  170 (427)
                      +++.|.+....-+++++-+-|+++-+.       ....|+ .+.++|+.+++.+++.+.    ||+.+.+.=++.-++++
T Consensus       108 l~G~gIav~nVLLPslIK~~Fpk~~~~-------mtglYs-~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl  179 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFPKRVGL-------MTGLYS-TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL  179 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhcccchhh-------HHhHHH-HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence            999999999999999998888765432       345554 688999999998888876    79998887777777788


Q ss_pred             HHHHhc
Q 037418          171 LVFLSG  176 (427)
Q Consensus       171 iif~~~  176 (427)
                      ++.+..
T Consensus       180 ~~WlPq  185 (395)
T COG2807         180 LIWLPQ  185 (395)
T ss_pred             HHHhhh
Confidence            777765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.57  E-value=0.00062  Score=71.11  Aligned_cols=155  Identities=14%  Similarity=0.009  Sum_probs=80.3

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHH------------HHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAA------------IVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV   72 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~------------~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~   72 (427)
                      -+.|||+. .+..++ +.+|++..+++.            ..........+..+++|+++||+ |||++++++..++.+.
T Consensus       301 ~~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~~~  378 (502)
T TIGR00887       301 DIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILTVL  378 (502)
T ss_pred             HHHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHH
Confidence            35677766 444444 457876543321            11112223334667889999995 9999998887666552


Q ss_pred             hhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhc
Q 037418           73 SYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFP  150 (427)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~  150 (427)
                      ...+............+.........+..+.-+....+.+|.++++.         |.....  +...++|+++++.+.+
T Consensus       379 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~---------R~~~~g~~~~~~~~~~~~~~~~~~  449 (502)
T TIGR00887       379 FFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY---------RSTAHGISAASGKAGAIIGQFGFL  449 (502)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH---------HHHHHHHHHHHhhhHHHHHHHHhh
Confidence            11110000000011111111111222222333455566678876543         344444  6778899999988887


Q ss_pred             eec---c----------chhHhHHHHHHHHHHHH
Q 037418          151 YIK---P----------WKIRFGIPAIFTVVATL  171 (427)
Q Consensus       151 ~l~---g----------~~~~F~i~~v~~~i~~i  171 (427)
                      ++.   +          +...|.+-++..+++.+
T Consensus       450 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       450 YLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             hhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            664   1          23455655555555543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.50  E-value=0.0025  Score=64.00  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=46.1

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA   71 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~   71 (427)
                      .|+++.+|++..+++.+.........+..++.|++.||+ |||+.+.++..+..+
T Consensus       228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  281 (392)
T PRK10473        228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLA  281 (392)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            466678899999999888888888888899999999995 999999888876665

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.49  E-value=0.00093  Score=67.67  Aligned_cols=145  Identities=12%  Similarity=0.027  Sum_probs=86.1

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      .+-.|+++..+ ++.+++.+...............+.+.|+..+.++.+..+..+..+....+..    ..+.+...+..
T Consensus       230 ~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~  304 (400)
T PRK11646        230 MLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM----VSNLQQLFTLI  304 (400)
T ss_pred             hhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHH
Confidence            34566665545 66777776666555444333334555665567677777776665552211110    12334455566


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--c-----chhHhHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--P-----WKIRFGIPAI  164 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g-----~~~~F~i~~v  164 (427)
                      .+.++|.+...|...++..|..++++         +.+.+.  ..+.++|..+|+.+.+++.  +     ....|.+..+
T Consensus       305 ~l~~~g~~~~~p~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~  375 (400)
T PRK11646        305 CLFYIGSIIAEPARETLSASLADARA---------RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGI  375 (400)
T ss_pred             HHHHHHHHHHHccHHHHHHhcCCccc---------chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHH
Confidence            67888888999999999998876543         223333  5677889999988888875  1     2344544444


Q ss_pred             HHHHHHHH
Q 037418          165 FTVVATLV  172 (427)
Q Consensus       165 ~~~i~~ii  172 (427)
                      ..+++.++
T Consensus       376 ~~~~~~~~  383 (400)
T PRK11646        376 IGLITLLA  383 (400)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.48  E-value=0.00059  Score=70.79  Aligned_cols=152  Identities=13%  Similarity=0.059  Sum_probs=90.1

Q ss_pred             HhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHHH
Q 037418           18 YLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGLI   96 (427)
Q Consensus        18 yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~li   96 (427)
                      |.+..++ +....+.+.........++.++.++++||+ |||+++.++..+..+ .+...........+.+.+.+...+.
T Consensus       257 ~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  334 (473)
T PRK10429        257 YFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILL  334 (473)
T ss_pred             EEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            3333334 344444444554455667777889999995 999999888776554 1111000000022345666677788


Q ss_pred             HhhcccccccccchhcccCCcchhhhhhhhhhHHH-HHH--HHHHHHHHHHHhhhhceec---cch--------------
Q 037418           97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLF-FFS--FCGVVLVPIIALIAFPYIK---PWK--------------  156 (427)
Q Consensus        97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~-~f~--Y~~iNiG~~i~~~~~~~l~---g~~--------------  156 (427)
                      ++|.+...+...++.+|..|.++-+.   .++++. .|+  -+...+|..+|+.+.+++-   ||.              
T Consensus       335 g~~~~~~~~~~~am~ad~id~~e~~t---G~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~~~~~~~i~  411 (473)
T PRK10429        335 NIGTALFWVLQVIMVADTVDYGEYKL---GIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQSAQTLLGMQ  411 (473)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHhc---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence            89999999999999999876542211   111232 344  5567788888877766542   442              


Q ss_pred             hH-hHHHHHHHHHHHHHHH
Q 037418          157 IR-FGIPAIFTVVATLVFL  174 (427)
Q Consensus       157 ~~-F~i~~v~~~i~~iif~  174 (427)
                      +. ..+|+++++++.+++.
T Consensus       412 ~~~~~~p~~~~~~~~~~~~  430 (473)
T PRK10429        412 FIMIGLPTLFFMITLVLYF  430 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            22 2367777777766553

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.45  E-value=0.0009  Score=76.94  Aligned_cols=151  Identities=7%  Similarity=-0.106  Sum_probs=99.7

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hhhcC--C--C
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VSYEY--K--P   78 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~~~~--~--~   78 (427)
                      +.++++. .+..|+++.+|.+..+++.+.+.+.....+..++.|+++|+. ++++.+..+.++..+   .+...  .  .
T Consensus       239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (1140)
T PRK06814        239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASSSVPA  317 (1140)
T ss_pred             HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhccccccc
Confidence            4445555 778899999999999999999999999999999999999885 555544444443332   11110  0  0


Q ss_pred             CC---------CCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 037418           79 EC---------IGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAF  149 (427)
Q Consensus        79 ~~---------~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~  149 (427)
                      +.         ....+.+.+.+++++++++.|...+...+++.+..+++...      +.-+.+ ....++|..+++.+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G------~v~g~~-~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        318 EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRA------RVIAAN-NVLNAAFMVAGTIIL  390 (1140)
T ss_pred             ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccce------eeeHHH-HHHHHHHHHHHHHHH
Confidence            00         00134456677888899999999999999998877664421      122233 466677777777776


Q ss_pred             ceec----cchhHhHHHHHH
Q 037418          150 PYIK----PWKIRFGIPAIF  165 (427)
Q Consensus       150 ~~l~----g~~~~F~i~~v~  165 (427)
                      +.+.    ++...|.+.++.
T Consensus       391 g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        391 ALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHhccCHHHHHHHHHHH
Confidence            6664    555555544443

>TIGR01272 gluP glucose/galactose transporter

Probab=97.43  E-value=0.0051  Score=60.22  Aligned_cols=60  Identities=17%  Similarity=-0.001  Sum_probs=47.1

Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      .+.+.+.+++.+++.|.+...+..++++++.-++++.         .+..|  ..+..+|++++|++.+.+
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~---------~~~l~~~~~~~~~G~~~gP~i~~~~   69 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETA---------ASRLALTQAFNKLGTTVAPLFGGSL   69 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchH---------HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4678899999999999999999999999998655432         22333  567788888888887743

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.39  E-value=0.0043  Score=61.42  Aligned_cols=113  Identities=16%  Similarity=0.031  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccccc
Q 037418           26 SLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLV  105 (427)
Q Consensus        26 ~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~  105 (427)
                      +..-|+.+-+.|+..-.++..+-|-++|+| |||.++++|.+...+......  +  +.+...+.++..+.++..|-...
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~--~--S~~F~afv~aR~l~Gi~kgnl~v  140 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWA--L--SRNFAAFVLARFLGGIFKGNLSV  140 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHhhhhccCchHH
Confidence            345577777889999999999999999997 999999999887776322221  0  12333455556666555544322


Q ss_pred             cccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418          106 SIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus       106 ~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                       +-+.++|.+.+++         +...++  =.+-.+|..+||.+++++.
T Consensus       141 -~rAiisdV~sek~---------r~l~ms~v~~a~~lGfilGPmIGgyla  180 (451)
T KOG2615|consen  141 -IRAIISDVVSEKY---------RPLGMSLVGTAFGLGFILGPMIGGYLA  180 (451)
T ss_pred             -HHHHHHhhcChhh---------ccceeeeeehhhhcchhhcchhhhHHH
Confidence             3478889887643         222333  3455677777777777764

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.38  E-value=0.00094  Score=66.90  Aligned_cols=159  Identities=12%  Similarity=0.094  Sum_probs=114.1

Q ss_pred             hhhHHHHHH-hHH----HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhc
Q 037418            2 FWADIFAAY-AMW----VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYE   75 (427)
Q Consensus         2 ~~~eRfs~Y-g~~----~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~   75 (427)
                      |+.-||=|- |++    .-..|-.+.+|+++.+-..+...-+....++++++|+|+|| +|-++++.++.+++.+ .+-.
T Consensus       257 FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~  335 (438)
T COG2270         257 FLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYL  335 (438)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHH
Confidence            444444443 555    35678888999999999999888889999999999999999 5988999999888776 2221


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-HH-HHHHHHHHHhhhhceec
Q 037418           76 YKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-FC-GVVLVPIIALIAFPYIK  153 (427)
Q Consensus        76 ~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y~-~iNiG~~i~~~~~~~l~  153 (427)
                      +.     .....-+++.=.++++..|...+..=++.++..++++.         .++|. |- .--.+++.||.+.+.+-
T Consensus       336 ~~-----~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~---------~~fFglyaltgra~S~~gp~lv~v~t  401 (438)
T COG2270         336 IF-----LEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKE---------GRFFGLYALTGRAASFLGPFLVAVIT  401 (438)
T ss_pred             HH-----ccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccc---------cceeehhhhhhhHHHHHHHHHHHHHH
Confidence            11     11223344444678999999999999999999887654         33555 33 44556666776666553


Q ss_pred             ----cchhHhHHHHHHHHHHHHHHHh
Q 037418          154 ----PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       154 ----g~~~~F~i~~v~~~i~~iif~~  175 (427)
                          +-++++..-.+.+.+++++++.
T Consensus       402 ~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         402 QITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHhcchhhHHHHHHHHHHhhHhhEEe
Confidence                6778888777777777776653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.0011  Score=69.27  Aligned_cols=154  Identities=8%  Similarity=-0.012  Sum_probs=113.4

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHH-HHHHHHHHHH---hhhcCCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWM-LLVSSLAYSA---VSYEYKPECI   81 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~-i~~g~~~~~~---~~~~~~~~~~   81 (427)
                      ++|+-.. .|..|.. ..|+++.+++.++........+.-++.|++||+..=+++. ..++.+...+   .+|..     
T Consensus       312 ~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-----  385 (509)
T KOG2504|consen  312 LGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-----  385 (509)
T ss_pred             HHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-----
Confidence            4455455 5666665 6899999999999999999999999999999997422333 3333333333   23322     


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cc
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PW  155 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~  155 (427)
                        .+.+.+..--++.++..|.+-.+.+....|..+.++         ....|.  .....+++++|+-+++++.    +|
T Consensus       386 --~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~---------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y  454 (509)
T KOG2504|consen  386 --TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK---------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY  454 (509)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh---------cchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence              345666677778888888888888877788776543         445555  7888899999998888886    59


Q ss_pred             hhHhHHHHHHHHHHHHHHHhcc
Q 037418          156 KIRFGIPAIFTVVATLVFLSGT  177 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~~~~  177 (427)
                      ...|..+++.++++....+..+
T Consensus       455 ~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  455 DHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999987766543

>PRK11043 putative transporter; Provisional

Probab=97.37  E-value=0.0063  Score=61.24  Aligned_cols=100  Identities=6%  Similarity=-0.123  Sum_probs=66.1

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hhhcCCCCCCCCchhHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VSYEYKPECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~~   90 (427)
                      .+..|++ +.|++..+++...........+..++++++.||+ |+++++..+.....+   .+..... . ...+.+...
T Consensus       225 ~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~  300 (401)
T PRK11043        225 GSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASL-L-SHPSLVPLL  300 (401)
T ss_pred             HhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHH
Confidence            3445554 5799999998877777667777888889999995 988876655444433   1111100 0 012334455


Q ss_pred             HHHHHHHhhcccccccccchhcccCCc
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTD  117 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~  117 (427)
                      .+..+.+++.|...|...+...|+.++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (401)
T PRK11043        301 IPFCVMAAANGAIYPIVVAQALRPFPQ  327 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcc
Confidence            667788899999999888887777653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.33  E-value=0.0019  Score=66.28  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc--cc--hHHHHHHHHHHHHH---hhhcCCCCCCCCchh
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI--IG--NYWMLLVSSLAYSA---VSYEYKPECIGEGQK   86 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~--lG--r~~~i~~g~~~~~~---~~~~~~~~~~~~~~~   86 (427)
                      ....|+.+++|++.++.+.+.+....--.+=|+. |.++|.+  .|  ||.=+++|.++..+   .+..+ +..  ..+.
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~-g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~-~~~--~~s~   86 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLY-GLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL-PAS--ESSA   86 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhH-HhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc-ccc--cchh
Confidence            4667888999999999888666655555555555 9999997  34  45556667766644   12212 110  1234


Q ss_pred             HHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhHhHHHH
Q 037418           87 ILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIRFGIPA  163 (427)
Q Consensus        87 ~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~  163 (427)
                      ....+.+.+..+|.........++..|.-+.++ ++   +.+.++.. |.+.++|.+++..+.+.+.   +++..|.+++
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~~---~g~lqS~~-~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREP-ES---RGDLQSFV-WGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-ch---hHHHHHHH-HHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            455567788899999999999999988765433 22   33345454 7899999999988887775   8888898887


Q ss_pred             HHHHHHHHH
Q 037418          164 IFTVVATLV  172 (427)
Q Consensus       164 v~~~i~~ii  172 (427)
                      +...+.++.
T Consensus       162 ~~~~l~~~~  170 (433)
T PF03092_consen  162 ALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHH
Confidence            766665543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.31  E-value=0.0016  Score=68.24  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             HHHHhHH----HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCC
Q 037418            7 FAAYAMW----VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIG   82 (427)
Q Consensus         7 fs~Yg~~----~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~   82 (427)
                      ...||+.    ++.-.+.+.++.+..+++.+.++..+..++..++.+.+.||+ |.|.+++.|++++.+.+.... .   
T Consensus        56 ~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lss-F---  130 (509)
T KOG2504|consen   56 LSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSS-F---  130 (509)
T ss_pred             HhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHH-H---
Confidence            5667775    566777788999999999999999999999999999999996 999999999999998332211 0   


Q ss_pred             CchhHHHHHHHH-HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cchhH
Q 037418           83 EGQKILFYTALG-LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PWKIR  158 (427)
Q Consensus        83 ~~~~~~~~~~l~-li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~~~~  158 (427)
                      ..+.+.+++... +.++|.|+........++.-|++        ||.+..++.-.+.-+|.++=+.+.-++-   ||+.+
T Consensus       131 ~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~  202 (509)
T KOG2504|consen  131 ATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA  202 (509)
T ss_pred             HhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence            234666666544 57899999888888888865543        2234445432233333333222222222   99999


Q ss_pred             hHHHHHHHHHH
Q 037418          159 FGIPAIFTVVA  169 (427)
Q Consensus       159 F~i~~v~~~i~  169 (427)
                      +.+=+..++-.
T Consensus       203 ~l~~~~~~l~~  213 (509)
T KOG2504|consen  203 LLIFGGISLNV  213 (509)
T ss_pred             HHHHHHHHHHH
Confidence            87655555333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.29  E-value=1.2e-05  Score=82.30  Aligned_cols=131  Identities=18%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hh-cCCCCCCCCchhHHHHHHHHHHHhhcccccc
Q 037418           28 VRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SY-EYKPECIGEGQKILFYTALGLIAFGMSGHLV  105 (427)
Q Consensus        28 ~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~  105 (427)
                      .+.+...+.......++.+++|+++||+ |||+++.++.+++.+. +. ...+ .  ..+.+.+.++..+.++|.|+.-+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~-~--~~~~~~~~~~R~~~G~~~g~~~~  121 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAP-S--YNNFWMLLIGRFLIGFGIGGAYV  121 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccc-c--ccccccccccccccccccccccc
Confidence            3456677777778888899999999995 9999999999888772 22 2211 0  12567888999999999999999


Q ss_pred             cccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec------cchhHhHHHHHHHHHH
Q 037418          106 SIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK------PWKIRFGIPAIFTVVA  169 (427)
Q Consensus       106 ~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~------g~~~~F~i~~v~~~i~  169 (427)
                      ....++.|.-+++.      |......+ ..+.++|.+++......+.      +|+..+.++++..++.
T Consensus       122 ~~~~~~~E~~~~~~------R~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~  184 (451)
T PF00083_consen  122 VSPIYISEIAPPKH------RGFLSSLF-QLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV  184 (451)
T ss_pred             cccccccccccccc------cccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998764432      11112222 4566778777765544332      4888887776665433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00898 2A0119 cation transport protein

Probab=97.28  E-value=0.0023  Score=66.58  Aligned_cols=119  Identities=13%  Similarity=0.064  Sum_probs=74.6

Q ss_pred             HHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc--CCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCC
Q 037418           39 GTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE--YKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMT  116 (427)
Q Consensus        39 ~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~  116 (427)
                      .......+++++++||+ |||+.+.++.++..+.+..  ..+    ....+.......+...+.+..-+....+.+|.++
T Consensus       366 ~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       366 LVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP----VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34456778899999994 9999999988776662211  111    1111233333444455566666777888889886


Q ss_pred             cchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--cchhHhHHHHHHHHHHHHH
Q 037418          117 DSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       117 ~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--g~~~~F~i~~v~~~i~~ii  172 (427)
                      ++.         |.....  .....+|+++++.+.+ +.  ++...|.+.++..+++.++
T Consensus       441 ~~~---------r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       441 TVV---------RNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHH---------HhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH
Confidence            542         333444  6777899999998888 44  5566666555555444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.25  E-value=0.0039  Score=65.50  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=103.3

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      ++-+|..+.+|.+...-+.+.+++.....+..++.+.+.++ +++.+.+..+.+.+.+.+..+.    ...+.+...+++
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~la----l~~~~~~~~~~l  314 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLA----LSPSFWLALIAL  314 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHh----cchHHHHHHHHH
Confidence            56677778899999999999999999888899988898887 5888888888877766332221    023455666677


Q ss_pred             HHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH-H-HHHHHHHHHHhhhhceec---cchhHhHHHHHHHHH
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-F-CGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVV  168 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y-~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i  168 (427)
                      .+.+.+........++..-...    |++     .+.+.++ | ...+.|..+|..+.|.+.   |-+.++.++++++++
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~----P~~-----~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSV----PDW-----VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL  385 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC----CHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            7777777766666555543322    222     1456666 4 455555667777777776   778888888888877


Q ss_pred             HHHHHHh
Q 037418          169 ATLVFLS  175 (427)
Q Consensus       169 ~~iif~~  175 (427)
                      +.++...
T Consensus       386 ~~~~~~~  392 (524)
T PF05977_consen  386 SALIALR  392 (524)
T ss_pred             HHHHHHH
Confidence            7776654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.20  E-value=0.0023  Score=63.18  Aligned_cols=106  Identities=12%  Similarity=0.001  Sum_probs=75.2

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCc
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEG   84 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~   84 (427)
                      .++++. .+..|+++.+|+++.+++.+...+.....+..+++|+++||+ ||||.+..+......  .+......  ...
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~  316 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFLVVLGLV--SPL  316 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHHHHhcCC--Ccc
Confidence            455666 678899999999999999888888888889999999999995 998877766555444  11111100  011


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCC
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMT  116 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~  116 (427)
                      +.+.....+.+..++.|...+...++.++..+
T Consensus       317 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  348 (366)
T TIGR00886       317 SLAVFIVLFVALFFFSGAGNGSTFALVPHIFR  348 (366)
T ss_pred             hHHHHHHHHHHHHHHhccccchhhhcchhhch
Confidence            44555566666777777777777777777654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.19  E-value=0.0026  Score=64.76  Aligned_cols=141  Identities=13%  Similarity=0.019  Sum_probs=95.0

Q ss_pred             HHHHHhhHh-cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHH
Q 037418           14 VMITYLTNV-WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        14 ~l~~yl~~~-l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      .+..|+.+. .+.+...++.....+.+...+.-++||+++||. +++|.+.++.....+.......    ..+. .....
T Consensus       254 ~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~----~~~~-~~~~~  327 (410)
T TIGR00885       254 FIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIF----AGGH-VGLYC  327 (410)
T ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH----cCCh-HHHHH
Confidence            356666532 355666677777777777889999999999995 9999888887776662211110    0111 23466


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---------cchhHhHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---------PWKIRFGIPA  163 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---------g~~~~F~i~~  163 (427)
                      +.++++..+.+-|.+.+...+..+++..       +-.... -+++ +|..+.|.+.+++.         |++.+|.++.
T Consensus       328 l~~~glf~s~~fp~i~sl~~~~~g~~~~-------~~s~~l-~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       328 LTLCSAFMSLMFPTIYGIALKGLGQDTK-------YGAAGL-VMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL  398 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhHHHH-HHHH-hccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence            7778888888889999999998865431       112333 3444 88888888877765         2778898888


Q ss_pred             HHHHHH
Q 037418          164 IFTVVA  169 (427)
Q Consensus       164 v~~~i~  169 (427)
                      ++.+..
T Consensus       399 ~~~~~~  404 (410)
T TIGR00885       399 LCFAVI  404 (410)
T ss_pred             HHHHHH
Confidence            876543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.0084  Score=59.10  Aligned_cols=162  Identities=13%  Similarity=0.077  Sum_probs=102.2

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~   83 (427)
                      +.+.||-+- =|--++. +-|+|.++|+.+++..+.....+.+.+=++++|.-.+|+..+..+..+.+...++.  . .+
T Consensus       220 qS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~--~-~P  295 (395)
T COG2807         220 QSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL--L-AP  295 (395)
T ss_pred             hHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH--H-hh
Confidence            456677666 4444444 46999999999999999999999999999999987777777777777666333221  0 01


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHH---HHHhhhhceec----cch
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVP---IIALIAFPYIK----PWK  156 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~---~i~~~~~~~l~----g~~  156 (427)
                      .+.+  +....++++|.|+.-|-...++.+..++  +++   ..+++ .+.   ..+|.   .+||.+.+++.    ||+
T Consensus       296 ~~~~--~lw~~llG~G~G~~F~laL~li~~rs~~--a~~---Aa~LS-gma---Qg~GYllAa~GP~l~G~lhDa~gsw~  364 (395)
T COG2807         296 GQLP--ILWALLLGLGQGGAFPLALTLILLRSSD--AAI---AAALS-GMA---QGVGYLLAAFGPWLFGFLHDATGSWS  364 (395)
T ss_pred             hhHH--HHHHHHHhCccchHHHHHHHHHHhhcCC--hHH---HHHHH-HHh---hhhhHHHHhhhhhhHhHHHHhcCChH
Confidence            2222  2236899999999999999999887543  443   22233 332   33332   23566677775    787


Q ss_pred             hHhHH-HHHHHHHHHHHHHhccccee
Q 037418          157 IRFGI-PAIFTVVATLVFLSGTCSYR  181 (427)
Q Consensus       157 ~~F~i-~~v~~~i~~iif~~~~~~~~  181 (427)
                      ..... ..+.......-+..+|++|.
T Consensus       365 ~~~~~l~~~~i~m~i~Gl~a~r~~~i  390 (395)
T COG2807         365 APLVLLALATLLMLIFGLRAGRNRYI  390 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHh
Confidence            65432 22222222233455555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.13  E-value=0.0023  Score=49.01  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=46.6

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAY   69 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~   69 (427)
                      -+..|++ +.|++..+.+.+.++-.....+.+++-|+++||. ||+|.++.+..++
T Consensus        22 fl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   22 FLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             hhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            3566665 4899999999999999999999999999999996 8888888776654

>PRK11462 putative transporter; Provisional

Probab=97.10  E-value=0.0078  Score=62.28  Aligned_cols=129  Identities=11%  Similarity=-0.022  Sum_probs=72.0

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hh-hcCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VS-YEYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~   91 (427)
                      ....|.+..+|.++ ..+.+...+.....+..+++++++||+ |||+++..+..+..+ .+ ..+.+    ..+...+++
T Consensus       250 ~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  323 (460)
T PRK11462        250 AMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVP----MQASITMFV  323 (460)
T ss_pred             HhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc----hhHHHHHHH
Confidence            45555555555433 234455666666777888999999985 888887655443322 11 11111    122233444


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHH-HH--HHHHHHHHHHHhhhhce
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFF-FS--FCGVVLVPIIALIAFPY  151 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~-f~--Y~~iNiG~~i~~~~~~~  151 (427)
                      ...+.+++.+...+...++.+|..|.++-+.   .++++.. |+  -++.++|..+|+.++++
T Consensus       324 ~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~t---G~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        324 FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCN---GKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhc---CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556677777777777888888766432211   1223333 33  35566666666555443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0022  Score=67.90  Aligned_cols=260  Identities=15%  Similarity=0.065  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH---hhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccc
Q 037418           33 IVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA---VSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGG  109 (427)
Q Consensus        33 ~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~  109 (427)
                      ....+....+-.+..+.-.+ +.-|..+++..-...-.+   ....+       .+....|+...+..-+ +..++|+++
T Consensus        11 ~~~~~~~~d~~~~~~~~~~~-~~~g~~~s~~~il~~e~~e~~a~~g~-------~~nlv~ylt~~~~~~~-~~aa~~v~~   81 (571)
T KOG1237|consen   11 IYHDFTSVDYRGPLLGSSIA-FKTGGWLSAPFILGNEVLERLAFFGL-------VSNLVTYLTLELHASG-GGAANNVNA   81 (571)
T ss_pred             hccccceeeccCCccccccc-ceechhHhHHHHHHHHHHHHHhHhcc-------hhHHHHHHHHHhccch-HHHHHHHHH
Confidence            33444445555555554444 344666655433322222   22222       2334566666666666 999999999


Q ss_pred             hhcccCCcchhhhhhhhhhHHHHHH-HHHHHHHHHHHhhhhceeccchhHhHHHHHHHHHHHHHHHhcccceeecC-CCC
Q 037418          110 FMADQMTDSRAEQVSMRSAKLFFFS-FCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRK-PLG  187 (427)
Q Consensus       110 ~~~dq~~~~~~~~~~~~~~~~~~f~-Y~~iNiG~~i~~~~~~~l~g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~-p~g  187 (427)
                      +.|+++....-.    +-.-|+++. |+.+|+++++..+.         .|+++...++.++..+-+   .+.... ..+
T Consensus        82 f~G~~~~~~l~g----~~laD~f~gry~tI~~~s~i~~~G---------~~~lt~~a~~~~l~p~~~---~~~~~~~~c~  145 (571)
T KOG1237|consen   82 FGGTQFLLPLLG----AFLADSFLGRYFTINIGSLISLLG---------LFGLTLSAMIPALLPFMC---KFKPGGNVCE  145 (571)
T ss_pred             HhhHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhcCCccc---cCCCCCCccc
Confidence            999998762211    111345555 99999999986433         566666666665544433   111111 122


Q ss_pred             ChhHHHHHHHHHHHhhccCCCCCCCccccccCCcccccccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHH
Q 037418          188 SPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEET  267 (427)
Q Consensus       188 ~pl~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~  267 (427)
                      +|-+....++..++........               ..     ...+.+.++...+.                .+.+++
T Consensus       146 ~~s~~q~~~~~~~l~lia~G~g---------------g~-----r~~~~~fGadQfd~----------------~~~~~~  189 (571)
T KOG1237|consen  146 SPSKLQLAVLYGALYLIALGAG---------------GI-----RPCLLAFGADQFDE----------------LDPVEV  189 (571)
T ss_pred             CcchHHHHHHHHHHHHheeccC---------------CC-----CCcchhhcccccCc----------------cCcchh
Confidence            3333333444444443211000               00     01122222222210                111122


Q ss_pred             HhhccchhhhhhhHhhHhhhcccchhHHHHHHHhcC-CCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 037418          268 KGLLRMIPICLTFIIPGVVSSIGFTYFLEQADHLNR-KVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYA  346 (427)
Q Consensus       268 k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~~d~-~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s  346 (427)
                      +.        ....+.|..+.|..+.+..|+..++. +..+|.+-++..+..|.+.++++.|......++..+       
T Consensus       190 ~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~-------  254 (571)
T KOG1237|consen  190 KG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPR-------  254 (571)
T ss_pred             hC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCC-------
Confidence            21        24567888889999999988877775 567888888889999999999999988776654321       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHH
Q 037418          347 PAIGFATSMVLAILCCITAAKV  368 (427)
Q Consensus       347 ~~~ki~iG~~l~~ls~l~~~~~  368 (427)
                      --.+..+|-++.++++-.....
T Consensus       255 gsp~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  255 GSPKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             CCchhHHHHHHHHHHHHHhccC
Confidence            2267778888888888765433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.03  E-value=0.019  Score=57.65  Aligned_cols=125  Identities=7%  Similarity=-0.107  Sum_probs=75.6

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHH-HHHHH--hhhcCCCCCCCCchhHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSS-LAYSA--VSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~-~~~~~--~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      ..|+++.+|++..+++.+.........+..++++++.||+ |+........ ....+  ..+...    ...+.+.+..+
T Consensus       231 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  305 (394)
T PRK11652        231 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQSVICCLLAGLLMWIPGWF----GVMNVWTLLVP  305 (394)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHH
Confidence            3467777999999888776665555556666667777764 4322221111 11111  111111    01234456667


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ..+.++|.|..-|...+...|..+++..       .....+ ....|+|..+++.+.+++.
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g-------~~~~~~-~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        306 AALFFFGAGMLFPLATSGAMEPFPYLAG-------TAGALL-GGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccch-------HHHHHH-HHHHHHHHHHHHHHHHHcc
Confidence            7888999999999999988887653221       122233 4566899999998888776

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.00  E-value=0.0094  Score=59.74  Aligned_cols=154  Identities=15%  Similarity=0.161  Sum_probs=108.7

Q ss_pred             HHHHHhhH---------hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 037418           14 VMITYLTN---------VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEG   84 (427)
Q Consensus        14 ~l~~yl~~---------~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~   84 (427)
                      .+.+++++         .+|++..+.+.+...+.+-..+.=.+.|++..|..|++|+..+|+....+.+..+.. .....
T Consensus       221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~-a~~~~  299 (403)
T PF03209_consen  221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL-AGPLG  299 (403)
T ss_pred             HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence            55666665         589999999999999999999988899999998899999999999888872222110 00123


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec--------
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK--------  153 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~--------  153 (427)
                      +.+.+..++.++++|+|.+.....+...|.-.+++..      ..-....   -.+..+|.++|..+-...+        
T Consensus       300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG------~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~  373 (403)
T PF03209_consen  300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAG------LFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPA  373 (403)
T ss_pred             cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            5678999999999999999988888888876544321      1111221   3344555555543332221        


Q ss_pred             -cchhHhHHHHHHHHHHHHHHH
Q 037418          154 -PWKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       154 -g~~~~F~i~~v~~~i~~iif~  174 (427)
                       +|...|.+-++.+++++.+..
T Consensus       374 ~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  374 LAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence             688889999999988876653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.015  Score=60.30  Aligned_cols=159  Identities=18%  Similarity=0.205  Sum_probs=94.5

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccc-------hHHHHHHHHHH-HHHhh
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIG-------NYWMLLVSSLA-YSAVS   73 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lG-------r~~~i~~g~~~-~~~~~   73 (427)
                      ++|-+++|-+. -+=.|+++.||++..+.+.+...=.....+..+++|++||+...       +||..-..+.. ..+.+
T Consensus       268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l  347 (466)
T KOG2532|consen  268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFL  347 (466)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHH
Confidence            55666777776 66789999999999999998888888888999999999999755       22222111111 11122


Q ss_pred             hcCC-CCCCCC-chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhh
Q 037418           74 YEYK-PECIGE-GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAF  149 (427)
Q Consensus        74 ~~~~-~~~~~~-~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~  149 (427)
                      ..+. .++... .....+.+++.+.+...+++.-|..       + ..|+.      -.-...  -...++..+++|.++
T Consensus       348 ~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~-------~-~apq~------a~~l~g~~~~~~~~~~~~~P~~v  413 (466)
T KOG2532|consen  348 LVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ-------D-IAPQH------AGFVMGIINFVGALAGFIAPLLV  413 (466)
T ss_pred             HeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh-------h-ccchH------HHHHHHHHHHHHHHHHHHHHHhe
Confidence            2121 111111 1122222333333333333322211       1 01211      111222  566777888888888


Q ss_pred             ceec------cchhHhHHHHHHHHHHHHHHHh
Q 037418          150 PYIK------PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       150 ~~l~------g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      +.+-      .|+..|.+.++.++++.++|.+
T Consensus       414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             eeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            8664      7999999999999999988865

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.016  Score=59.55  Aligned_cols=106  Identities=19%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             HHHhHH--HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCCCCCCCC
Q 037418            8 AAYAMW--VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYKPECIGE   83 (427)
Q Consensus         8 s~Yg~~--~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~~~~~~~   83 (427)
                      ..+.++  .++.|.+..+|.++..+.............+.++--.+.++ +||+++..++.++..+..  ..+.+    .
T Consensus       250 ~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~----~  324 (467)
T COG2211         250 IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP----A  324 (467)
T ss_pred             HHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc----C
Confidence            344455  57788888899999999888888888777878888999998 599999999988888721  11221    3


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcc
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDS  118 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~  118 (427)
                      .+.++.++...+..+|.+...+-.-++++|.-|.+
T Consensus       325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyg  359 (467)
T COG2211         325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG  359 (467)
T ss_pred             cchHHHHHHHHHHHHHhhccccccHHHhcchhhHH
Confidence            45677888889999999999999999999976543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.70  E-value=0.019  Score=56.79  Aligned_cols=136  Identities=12%  Similarity=0.094  Sum_probs=78.4

Q ss_pred             hhhHHHHHHhHHHHHHHhhHh---cCC---------------chHHHHHHHH--HHHHHHHHhhhHHHHhhhcccchHHH
Q 037418            2 FWADIFAAYAMWVMITYLTNV---WKI---------------SLVRAAAIVN--FFWGTVLMLPLAIQYLVDTIIGNYWM   61 (427)
Q Consensus         2 ~~~eRfs~Yg~~~l~~yl~~~---l~~---------------~~~~A~~~~~--~~~~~~y~~~~~GG~laD~~lGr~~~   61 (427)
                      ||.-+|+|||+-+++.=+-+.   .+.               ....+.....  .-+..-+-.-++.|++-|| +|||+|
T Consensus       335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver-lGRKkT  413 (528)
T KOG0253|consen  335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER-LGRKKT  413 (528)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH-hcchhH
Confidence            688999999998433333221   111               1111222222  2333446677899999999 799999


Q ss_pred             HHHHHHHHHH-hhhcCCCCCCCCc-hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHH
Q 037418           62 LLVSSLAYSA-VSYEYKPECIGEG-QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCG  137 (427)
Q Consensus        62 i~~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~  137 (427)
                      +....+++.+ .+++..  |.+.. ...+++.+.+++..+.+    +.+.+.-+.|+..-         |..+-.  --.
T Consensus       414 Mal~l~~f~iflfll~~--c~~rn~~tvllf~arafisg~fq----vaYvYtPEVyPTav---------RatgvGtcSsm  478 (528)
T KOG0253|consen  414 MALSLILFGIFLFLLTT--CKTRNAYTVLLFTARAFISGAFQ----VAYVYTPEVYPTAV---------RATGVGTCSSM  478 (528)
T ss_pred             HHHHHHHHHHHHHHHHH--hcCcchhHHHHHHHHHHHhchhe----EEEEecCcccchhh---------hhcchhhhhhH
Confidence            9999988887 333332  32221 22344556666655544    45566666666532         333333  344


Q ss_pred             HHHHHHHHhhhhceec
Q 037418          138 VVLVPIIALIAFPYIK  153 (427)
Q Consensus       138 iNiG~~i~~~~~~~l~  153 (427)
                      .-||+.++|.++-..+
T Consensus       479 aRIggI~~p~iA~~~e  494 (528)
T KOG0253|consen  479 ARIGGIFSPVIAMRAE  494 (528)
T ss_pred             HhhhhhhhhHHHHHhc
Confidence            5678888887773333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.49  E-value=0.04  Score=56.00  Aligned_cols=154  Identities=14%  Similarity=0.118  Sum_probs=100.1

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKILFYTA   92 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~   92 (427)
                      ...|+++.-|.+...++.+.+.-...=..+=.+.+.+--|+ |-++.+.++...+.+  .+....++ +.....+...++
T Consensus       230 ~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~  307 (400)
T PF03825_consen  230 FSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLG  307 (400)
T ss_pred             HHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHH
Confidence            45677654447777776655544444444555678888885 999999999999888  22222100 000011223344


Q ss_pred             HHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---------cchhHhHHHH
Q 037418           93 LGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---------PWKIRFGIPA  163 (427)
Q Consensus        93 l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---------g~~~~F~i~~  163 (427)
                      ..+-++..|.+-.....++.+..+++.      |.+-+..|+=...-+|..+|..++|++-         .|...|.+++
T Consensus       308 q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a  381 (400)
T PF03825_consen  308 QLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFA  381 (400)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            567899999999999999999887654      2334566543345688888888888875         3455677777


Q ss_pred             HHHHHHHHHHHhc
Q 037418          164 IFTVVATLVFLSG  176 (427)
Q Consensus       164 v~~~i~~iif~~~  176 (427)
                      +..++..++|...
T Consensus       382 ~~~~~~~~~f~~~  394 (400)
T PF03825_consen  382 VMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777777777654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.37  E-value=0.001  Score=62.66  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=95.2

Q ss_pred             HHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHH
Q 037418           16 ITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGL   95 (427)
Q Consensus        16 ~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l   95 (427)
                      +.|+.+..|+...|.+.++-.--+...++..+.|-++|+ .||+|+-+.-++.|.+....=.     +.++..+.+|.++
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCiTKh-----SpqYkVLmVGR~L  133 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCITKH-----SPQYKVLMVGRVL  133 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHHhhc-----CCceEEEeehhhh
Confidence            456667789999998888766666677778888999998 5999999988888887433221     2344556677777


Q ss_pred             HHhhcccccccccch-hcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHH----Hhhhhceec-cchhHhHHHHHHH
Q 037418           96 IAFGMSGHLVSIGGF-MADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPII----ALIAFPYIK-PWKIRFGIPAIFT  166 (427)
Q Consensus        96 i~~g~g~~k~~~~~~-~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i----~~~~~~~l~-g~~~~F~i~~v~~  166 (427)
                      =++.+.+.-...-+. +++--++++-++    .-+..-|+   ++++.+-+.+    |..++.++. |--+-|-.+++..
T Consensus       134 GGiaTsLLFSaFEsWliaEHnekr~Feq----qWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL  209 (454)
T KOG4332|consen  134 GGIATSLLFSAFESWLIAEHNEKRGFEQ----QWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL  209 (454)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhccCChH----hhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence            777777654444332 333221221111    11122233   3334333333    445555555 7778898888888


Q ss_pred             HHHHHHHHhccc
Q 037418          167 VVATLVFLSGTC  178 (427)
Q Consensus       167 ~i~~iif~~~~~  178 (427)
                      .++..+.+..+.
T Consensus       210 aigmAvil~~W~  221 (454)
T KOG4332|consen  210 AIGMAVILSSWS  221 (454)
T ss_pred             HHHHHHHHhhhh
Confidence            888777765544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.039  Score=56.12  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=87.3

Q ss_pred             CchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-h-hhcCCCCCCCC--chhHHHHHHHHHHHhhc
Q 037418           25 ISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-V-SYEYKPECIGE--GQKILFYTALGLIAFGM  100 (427)
Q Consensus        25 ~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~l~li~~g~  100 (427)
                      ++....+.+.++-..-..+.+++-||++|++ |||+..-...+++++ . +..+ +.+..+  .-.+.+..-..++++|.
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~-s~~~~~~~~~m~~L~~~R~~LGiGI  158 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGL-SVGTTSPLGVMMTLCFFRFLLGIGI  158 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhcc-CCCCCCCcchhhHHHHHHHHhhccc
Confidence            6777788877777778889999999999995 999999888888877 2 2222 212111  23556667788999999


Q ss_pred             ccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec--------------cchhHhHHHHH
Q 037418          101 SGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK--------------PWKIRFGIPAI  164 (427)
Q Consensus       101 g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~--------------g~~~~F~i~~v  164 (427)
                      |+=-|+..+...+.-.+...     -......|.  =+++-.|+.++.++....+              =|+.-|++.++
T Consensus       159 GGDYPlSAtI~SE~an~~~R-----Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v  233 (538)
T KOG0252|consen  159 GGDYPLSATIMSESANKKTR-----GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV  233 (538)
T ss_pred             cCCCcchHHHhhhhhhhccc-----cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence            99999988877775322110     001112232  4556666666655554443              37777876554


Q ss_pred             H
Q 037418          165 F  165 (427)
Q Consensus       165 ~  165 (427)
                      -
T Consensus       234 p  234 (538)
T KOG0252|consen  234 P  234 (538)
T ss_pred             H
Confidence            3

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.22  E-value=0.047  Score=56.76  Aligned_cols=157  Identities=8%  Similarity=-0.110  Sum_probs=94.0

Q ss_pred             HHHHHhhHhcCCchHH----HHHHHHHHHHHHHHhhhH-HH---HhhhcccchHHH--HHHHHHHHHHhh--hcC---CC
Q 037418           14 VMITYLTNVWKISLVR----AAAIVNFFWGTVLMLPLA-IQ---YLVDTIIGNYWM--LLVSSLAYSAVS--YEY---KP   78 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~----A~~~~~~~~~~~y~~~~~-GG---~laD~~lGr~~~--i~~g~~~~~~~~--~~~---~~   78 (427)
                      .+.+|..+..+.+...    .+.+.+.......++..+ ..   .+.||..+.+..  +.+|.++..+..  ..+   ..
T Consensus       294 ~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~  373 (475)
T TIGR00924       294 SLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA  373 (475)
T ss_pred             HHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4666666654443222    455555555555544333 32   455542232332  356776665511  111   00


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---  153 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---  153 (427)
                      ......+.+.+.+...+.++|..+..|...++..++-+++.         +.....  +.+..+|..++..+.....   
T Consensus       374 ~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~---------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~  444 (475)
T TIGR00924       374 DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL---------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQ  444 (475)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            00013467778889999999999999999999999765432         233333  5677777877766666443   


Q ss_pred             cchhHhHHHHHHHHHHHHHHHhcccc
Q 037418          154 PWKIRFGIPAIFTVVATLVFLSGTCS  179 (427)
Q Consensus       154 g~~~~F~i~~v~~~i~~iif~~~~~~  179 (427)
                      ||..-|...++.+++..++++..+|+
T Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       445 GVTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888877777777665443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.13  E-value=2.1  Score=44.58  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=38.9

Q ss_pred             HHHHHHHHhhhHHHHhhhcccchHHHHHHH-HHHHHHh-hhc-CCCCCCCCchhHHHHHHHHHHHhhcccccccccchhc
Q 037418           36 FFWGTVLMLPLAIQYLVDTIIGNYWMLLVS-SLAYSAV-SYE-YKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMA  112 (427)
Q Consensus        36 ~~~~~~y~~~~~GG~laD~~lGr~~~i~~g-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~  112 (427)
                      +-....-+..++-|-+||+. |+||.++.. ..++.+. ... ...    +.+.+...+-.++-.++.+.-....+++.-
T Consensus        78 is~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~----~~~~~~~~~l~iia~v~~~~~~vfyna~LP  152 (477)
T PF11700_consen   78 ISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS----PGQWWLALVLFIIANVGYEASNVFYNAYLP  152 (477)
T ss_pred             HHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33334444445558899986 666655554 4444431 111 111    122222222223334566666667777777


Q ss_pred             ccCCcch
Q 037418          113 DQMTDSR  119 (427)
Q Consensus       113 dq~~~~~  119 (427)
                      |.-++++
T Consensus       153 ~la~~~~  159 (477)
T PF11700_consen  153 DLARPEP  159 (477)
T ss_pred             hhcCCCh
Confidence            7665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.94  E-value=0.15  Score=51.83  Aligned_cols=149  Identities=10%  Similarity=-0.002  Sum_probs=75.5

Q ss_pred             HHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-----hhhcCCCCCC
Q 037418            8 AAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-----VSYEYKPECI   81 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-----~~~~~~~~~~   81 (427)
                      .+++.. .+-.|+++.+|++..+++.......+...+...+.+.+.++..+ +|.+..+..+..+     .+.....   
T Consensus       233 ~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~ig~~l~~~~~~~~---  308 (413)
T PRK15403        233 PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE-PRFIWRAVPIQLVGLALLIVGNLLW---  308 (413)
T ss_pred             HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            334444 44567888889999999887765555555544444544433333 3433222211111     0100000   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec--cchhHh
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK--PWKIRF  159 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~--g~~~~F  159 (427)
                       ....+..+.++.+.++|.|...|++.+..-.|....+.+       ..+.++ .....+..++....+++.  +=.+.|
T Consensus       309 -~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~-------a~a~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  379 (413)
T PRK15403        309 -PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGT-------VSASLN-MVILMVMAVSVEIGRWLWFNGGRLPF  379 (413)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcH-------HHHHHH-HHHHHHHHHHHHHHHHHHHcCCchHH
Confidence             122334567888899999999999986443433322221       233443 222333344444445553  334555


Q ss_pred             HHHHHHHHHH
Q 037418          160 GIPAIFTVVA  169 (427)
Q Consensus       160 ~i~~v~~~i~  169 (427)
                      ....+...+.
T Consensus       380 ~~~~~~~~~~  389 (413)
T PRK15403        380 HLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHHH
Confidence            5444443333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.92  E-value=0.25  Score=51.18  Aligned_cols=119  Identities=17%  Similarity=0.052  Sum_probs=70.8

Q ss_pred             HHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcch
Q 037418           40 TVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR  119 (427)
Q Consensus        40 ~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~  119 (427)
                      ...+...+-|.++||| ||+..+.+....+.+-.+.+.     -..+|.+ + +.-+.-|.+.+-....++++|.-.++ 
T Consensus        74 ~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~-----~~~~~~~-~-~~~l~g~~~~~~s~~~a~vadis~~~-  144 (463)
T KOG2816|consen   74 LTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLL-----FQGYWFF-L-LLGLSGGFSAIFSVGFAYVADISSEE-  144 (463)
T ss_pred             HHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHH-----HHHHHHh-h-hcccccchhhhhhhhhhheeeccchh-
Confidence            4455566669999997 999999998887776221111     0112222 1 11122233334455566677754332 


Q ss_pred             hhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHHHh
Q 037418          120 AEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       120 ~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif~~  175 (427)
                        +      |...+.  .-+.-.|..+++.+++++.   |+-..|.++++..+++.+....
T Consensus       145 --~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~  197 (463)
T KOG2816|consen  145 --E------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLL  197 (463)
T ss_pred             --H------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhh
Confidence              2      333433  4445556677777777765   8888899988888777765444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.84  E-value=2.4  Score=42.80  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=76.6

Q ss_pred             hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc---cchHHH--HHHHHHHHHH-------hhhcCCC---CCCCC
Q 037418           19 LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI---IGNYWM--LLVSSLAYSA-------VSYEYKP---ECIGE   83 (427)
Q Consensus        19 l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~---lGr~~~--i~~g~~~~~~-------~~~~~~~---~~~~~   83 (427)
                      +..+|+.+..-.+.++..-.....+=+++ |+.+|++   +|.||+  |..|..++..       .+..+..   .....
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~R~~~-G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPLRVWF-GHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHh-ccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            45678888888888887777766665555 9999996   233444  4445554443       1111111   00011


Q ss_pred             chhH--HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhcee
Q 037418           84 GQKI--LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYI  152 (427)
Q Consensus        84 ~~~~--~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l  152 (427)
                      ...+  ...++..++++|.+...+...++.+|.-+|++         |.+.-+  |...-+|..++.++.+.+
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~---------R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER---------RPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh---------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122  33455667788888888999999999866543         334444  777788888887777644

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.84  E-value=0.13  Score=53.40  Aligned_cols=125  Identities=16%  Similarity=-0.029  Sum_probs=74.7

Q ss_pred             hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCC--CCCCCCchhHHH---HHHH
Q 037418           19 LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYK--PECIGEGQKILF---YTAL   93 (427)
Q Consensus        19 l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~--~~~~~~~~~~~~---~~~l   93 (427)
                      +...-|++..+|.......+....++.++|.++-||. |||+.++.+...+.+....+.  ....+....|.-   ..++
T Consensus       296 i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~  374 (485)
T KOG0569|consen  296 IFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAI  374 (485)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3345699999999988888889999999999999995 999999999988877111110  000001111221   2333


Q ss_pred             HHHHhhccc-ccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           94 GLIAFGMSG-HLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        94 ~li~~g~g~-~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      .+..++.+. .-|-..=+++|.+++++         |....+  +....+..++-....+.++
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~---------R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSA---------RSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222 34555556678887654         344444  4444444444445555565

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=95.80  E-value=0.075  Score=55.48  Aligned_cols=164  Identities=9%  Similarity=-0.049  Sum_probs=93.0

Q ss_pred             HHHhHH-HHHHHhhHhcCCchH----HHHHHHHHHHHHHHHhhhHHHHhhhcccchHH-------HHHHHHHHHHHhhh-
Q 037418            8 AAYAMW-VMITYLTNVWKISLV----RAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW-------MLLVSSLAYSAVSY-   74 (427)
Q Consensus         8 s~Yg~~-~l~~yl~~~l~~~~~----~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~-------~i~~g~~~~~~~~~-   74 (427)
                      .|..+. .+.+|..+..+.+..    .++.+.+.......++.++.|.+.||. |+|+       -+.+|.++..+... 
T Consensus       284 ~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~~~~  362 (489)
T PRK10207        284 LYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLGFLT  362 (489)
T ss_pred             HHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            344444 677777654333211    233333334344434444557899995 8886       36666666554211 


Q ss_pred             ------cCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037418           75 ------EYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIA  148 (427)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~  148 (427)
                            ...... ...+.+.+.....+.++|.++..|...+++.+.-+++..      ......+ +...++|..+|..+
T Consensus       363 ~~~~~~~~~~~~-~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~------g~~~g~~-~l~~~ig~~lg~~l  434 (489)
T PRK10207        363 AAAAGMWFADAQ-GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM------GFILGMW-FLTQAAAFLLGGYV  434 (489)
T ss_pred             HHHHHHhhcCCC-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH------HHHHHHH-HHHHHHHHHHHHHH
Confidence                  111101 123456666788999999999999999999887554321      1122222 67778888888766


Q ss_pred             hceec-------------cchhHhHHHHHHHHHHHHHHHhcccce
Q 037418          149 FPYIK-------------PWKIRFGIPAIFTVVATLVFLSGTCSY  180 (427)
Q Consensus       149 ~~~l~-------------g~~~~F~i~~v~~~i~~iif~~~~~~~  180 (427)
                      +.+.+             .+...|..-++..++..++++...|++
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~  479 (489)
T PRK10207        435 ATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWL  479 (489)
T ss_pred             HHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64331             255667765555555555554433433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.70  E-value=0.22  Score=46.12  Aligned_cols=131  Identities=14%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             hcCCch--HHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh--hhcCCCCCCCCchhHHHHHHHHHHH
Q 037418           22 VWKISL--VRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV--SYEYKPECIGEGQKILFYTALGLIA   97 (427)
Q Consensus        22 ~l~~~~--~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~li~   97 (427)
                      .++.+.  ...+.+...+.....+..++.|.++||+ |||+.+..+.....+.  +....+    ....+.+.......+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g  105 (338)
T COG0477          31 TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAP----NVGLALLLILRLLQG  105 (338)
T ss_pred             HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHH
Confidence            344444  4677778888888888889999999998 9998888887542221  111211    123455666666688


Q ss_pred             hhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HH-HHHHHHHHHhhhhceec-----cchhHhHHHHHH
Q 037418           98 FGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FC-GVVLVPIIALIAFPYIK-----PWKIRFGIPAIF  165 (427)
Q Consensus        98 ~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~-~iNiG~~i~~~~~~~l~-----g~~~~F~i~~v~  165 (427)
                      ++.|...|...++..|.+++ . ++      +...++  .. ..++|..+++.+.+.+.     +|+..|.+....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPE-A-TE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCc-h-hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            99999999999999998876 2 11      222333  23 35566666654444332     677655544443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.054  Score=54.24  Aligned_cols=144  Identities=17%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             HHHHHhHH-----HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCCC
Q 037418            6 IFAAYAMW-----VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYKP   78 (427)
Q Consensus         6 Rfs~Yg~~-----~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~~   78 (427)
                      -|-|-|+.     -+..|+.+..|.++.+++..+..+.....+.-++|-++-.| +-..|.+.+.++...+.+  ..++ 
T Consensus       245 ~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~-  322 (422)
T COG0738         245 IFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALI-  322 (422)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHh-
Confidence            37788886     37888888899999999999999999999999999999986 588888887776555421  2222 


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---cc
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---PW  155 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g~  155 (427)
                           .+ ..-..++.++++-++.+-|++.+..-+..+++++        ..+.+ -..--+|.++-|.+-+++.   |-
T Consensus       323 -----~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--------~~s~~-l~maivGGAiiP~l~G~i~d~~g~  387 (422)
T COG0738         323 -----GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--------VGSGL-LVMAIVGGAIIPPLQGVIADMFGI  387 (422)
T ss_pred             -----cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--------cccee-eeeheecchHHHHHHHHHHHhhhh
Confidence                 11 2334578889999999999999999999885543        23333 1233345555566666665   55


Q ss_pred             hhHhH-HHHHHH
Q 037418          156 KIRFG-IPAIFT  166 (427)
Q Consensus       156 ~~~F~-i~~v~~  166 (427)
                      ...|. ++..+.
T Consensus       388 ~~~~~~~pllc~  399 (422)
T COG0738         388 QLTFLIVPLLCY  399 (422)
T ss_pred             HHHHHHHHHHHH
Confidence            55555 444444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=95.57  E-value=0.19  Score=50.44  Aligned_cols=150  Identities=11%  Similarity=0.018  Sum_probs=80.9

Q ss_pred             HHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhccc--chHHHHHH-HHHHHHHhhhcCCCCCC
Q 037418            6 IFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTII--GNYWMLLV-SSLAYSAVSYEYKPECI   81 (427)
Q Consensus         6 Rfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~l--Gr~~~i~~-g~~~~~~~~~~~~~~~~   81 (427)
                      -.++|++. -+-.|+++ .|++.. ++........   ...+..++++||..  |+|+.... ...+..+....+..   
T Consensus       205 ~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~---  276 (368)
T TIGR00903       205 VALFDNLAIWLEAALRP-AGLEDI-AGDAVALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF---  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---
Confidence            35677777 57788854 678764 3333222222   23344689999862  32333222 22222221111110   


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec-cchhH
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK-PWKIR  158 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~-g~~~~  158 (427)
                       ..+.......+.+.+.+.+...+...++.+|.++++.         |.+...  +...|+|+..++.+.+.+. |.+..
T Consensus       277 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---------rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~  346 (368)
T TIGR00903       277 -ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---------HGKAAGAIGFTSRAISVALALAAMLFISSAEAY  346 (368)
T ss_pred             -ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh---------cCcccchhhHHHHHHHHHHHHHHHHHhcCHHHH
Confidence             0112222333344445555555667788999987643         233333  7888999988888777665 76677


Q ss_pred             hHHHHHHHHHHHHHH
Q 037418          159 FGIPAIFTVVATLVF  173 (427)
Q Consensus       159 F~i~~v~~~i~~iif  173 (427)
                      |.+-++..+++.+..
T Consensus       347 f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       347 FTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            765555555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.49  E-value=0.088  Score=46.12  Aligned_cols=67  Identities=19%  Similarity=0.366  Sum_probs=50.8

Q ss_pred             HhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccC
Q 037418           43 MLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQM  115 (427)
Q Consensus        43 ~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~  115 (427)
                      ++.+++..+-++ +|.|+++++|.+.+.+......     ..+.+.++.+=++.++|.+.+.+....++.+.-
T Consensus        52 ~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~-----~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   52 ISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFF-----YPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            344455556666 7999999999999998443322     234678888999999999999999999888643

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.40  E-value=0.47  Score=44.96  Aligned_cols=103  Identities=12%  Similarity=-0.103  Sum_probs=65.7

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCC-CCCCCCchhHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYK-PECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~-~~~~~~~~~~~~~   90 (427)
                      ...--+.+.+|++++|.+.+-.+-....++ .++.|.+.|++ |.+-++.+|+....+  ....+. ..-....+.|.+.
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            344556788999999999998888777786 58889999995 999999999998877  111111 0000123445555


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcc
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDS  118 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~  118 (427)
                      +.+.+.+.|.+.+....-.-..+.|+++
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~~  128 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFPRS  128 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCccc
Confidence            4445555555544333333333667653

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.06  E-value=0.67  Score=47.24  Aligned_cols=55  Identities=15%  Similarity=0.224  Sum_probs=46.5

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA   71 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~   71 (427)
                      ..+|..+.+| +...+....-+|+.......+.|-|+.|++ |-|-+.++++.+..+
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~i  121 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGI  121 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHH
Confidence            5567777777 666666777788888889999999999996 999999999999888

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.46  E-value=0.13  Score=53.67  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             HhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcc---cchHHHHHHHHHHHHH
Q 037418           10 YAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTI---IGNYWMLLVSSLAYSA   71 (427)
Q Consensus        10 Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~---lGr~~~i~~g~~~~~~   71 (427)
                      ||.. -+.+|+++..|++..+++.+...+.+...+..++.|+++||.   ..++..+..+..++.+
T Consensus       290 ~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  290 YGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             ccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4555 577888886779999999999999999999999999999994   4566666555555554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.12  E-value=0.0021  Score=65.80  Aligned_cols=142  Identities=15%  Similarity=-0.001  Sum_probs=78.7

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcC--CCCCCCC---chhHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEY--KPECIGE---GQKILFY   90 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~--~~~~~~~---~~~~~~~   90 (427)
                      .++.+..+.++.  ............+..+++.++.|| +|||+.++.+.+++.+ .+...  .......   .+... .
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i  352 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS-I  352 (451)
T ss_pred             cccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-c
Confidence            334445566666  112223334556777888899999 5999999999888776 11111  1000001   11111 1


Q ss_pred             HHHHH-HHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418           91 TALGL-IAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI  164 (427)
Q Consensus        91 ~~l~l-i~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v  164 (427)
                      ....+ ......+..+....+.+|.++.+.         |.....  +...++|+++++.+.+++.   +-...|.+-++
T Consensus       353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~---------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~  423 (451)
T PF00083_consen  353 VFLALFFAFFSLGWGPLPWIYTAELFPTKV---------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAG  423 (451)
T ss_pred             eeeeeccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccchhhHH
Confidence            22222 222222455667788899998653         344444  6777788888888877766   32344555555


Q ss_pred             HHHHHHH
Q 037418          165 FTVVATL  171 (427)
Q Consensus       165 ~~~i~~i  171 (427)
                      .++++.+
T Consensus       424 ~~~i~~i  430 (451)
T PF00083_consen  424 VCLIAII  430 (451)
T ss_pred             HHHHHHh
Confidence            5444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.24  E-value=1.4  Score=47.84  Aligned_cols=147  Identities=13%  Similarity=0.205  Sum_probs=100.9

Q ss_pred             hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-----hhhcCC----------------
Q 037418           19 LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-----VSYEYK----------------   77 (427)
Q Consensus        19 l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-----~~~~~~----------------   77 (427)
                      +.+.++++.++.+.+...+-...-+..++-.|.+-|. -|-|.|-+|.+++.+     .+|-..                
T Consensus       123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             hhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            3346899999999999999998888888889999885 888888777777755     222100                


Q ss_pred             -C---------------------CCC---CCc--hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHH
Q 037418           78 -P---------------------ECI---GEG--QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKL  130 (427)
Q Consensus        78 -~---------------------~~~---~~~--~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~  130 (427)
                       +                     .+.   ...  -+..++.|..+.++|.--+.|--.+++=|-.++++         ..
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~---------Sp  272 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN---------SP  272 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC---------Cc
Confidence             0                     000   011  12356678999999988877776666655433322         22


Q ss_pred             HHHH--HHHHHHHHHHHhhhhceec----------------------cchhHhHHHHHHHHHHHHHHHh
Q 037418          131 FFFS--FCGVVLVPIIALIAFPYIK----------------------PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       131 ~~f~--Y~~iNiG~~i~~~~~~~l~----------------------g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      .++.  |..--+|.++|.+++++.-                      -||.||++++..++++.+-++.
T Consensus       273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~  341 (735)
T KOG3626|consen  273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF  341 (735)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344  6677788888887776531                      5999999999988887776665

>TIGR00788 fbt folate/biopterin transporter

Probab=93.15  E-value=0.32  Score=50.48  Aligned_cols=123  Identities=7%  Similarity=-0.130  Sum_probs=83.1

Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh-h--cCC--CCCCC-CchhHHHHHHHH
Q 037418           21 NVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS-Y--EYK--PECIG-EGQKILFYTALG   94 (427)
Q Consensus        21 ~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~-~--~~~--~~~~~-~~~~~~~~~~l~   94 (427)
                      +.+|++..+.+.+....+....+...+.+.+.+| ++.|+++.++.++..+.. .  .+.  ..... ....+.......
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            4689999999999998887777777777777776 599999999988887722 1  110  00000 011223444566


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      +..++.|..-.....+..+.-+++..         .+.|.  ....|+|..+++.+++++.
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~e---------gt~~al~~s~~~lg~~v~~~~gg~l~  411 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCE---------SSVFALLASILHLGSSVSGFLGVLLM  411 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCce---------ehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888777778888887665432         33444  4456888888888777775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=92.97  E-value=0.025  Score=59.74  Aligned_cols=158  Identities=13%  Similarity=0.166  Sum_probs=2.7

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-----hhhcCC-C-
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-----VSYEYK-P-   78 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-----~~~~~~-~-   78 (427)
                      ...+|.. .-..-+.+.++++.++++.+...+-....+..++-.+.++|. .|-|-|-+|++++.+     .+|-+. + 
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            4455555 333456678999999999999999999999999999999985 788888888777766     233221 0 


Q ss_pred             ------------------CC---------------C---C---CchhHHHHHHHHHHHhhcccccccccchhcccCCcch
Q 037418           79 ------------------EC---------------I---G---EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR  119 (427)
Q Consensus        79 ------------------~~---------------~---~---~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~  119 (427)
                                        .|               .   .   ......+.+|-.+.++|..-+.+--.+++=|-.+++ 
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-  173 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-  173 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc-
Confidence                              12               0   0   112345667888888888877766666554432221 


Q ss_pred             hhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec-------------------------cchhHhHHHHHHHHHHHH
Q 037418          120 AEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK-------------------------PWKIRFGIPAIFTVVATL  171 (427)
Q Consensus       120 ~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~-------------------------g~~~~F~i~~v~~~i~~i  171 (427)
                               ....|-   |....+|.++|.++++..-                         -||+||.++++..++..+
T Consensus       174 ---------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  174 ---------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence                     233333   7777888888877765431                         499999998888776665


Q ss_pred             HHHh
Q 037418          172 VFLS  175 (427)
Q Consensus       172 if~~  175 (427)
                      -++.
T Consensus       245 pl~~  248 (539)
T PF03137_consen  245 PLFF  248 (539)
T ss_dssp             ----
T ss_pred             HHHc
Confidence            5554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=92.82  E-value=1.3  Score=46.30  Aligned_cols=139  Identities=12%  Similarity=-0.033  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhhhHH----HHhhhcccchHHHHHHHHHHHHHhhhc--CCCCC---CCCchhHHHHHHHHHHHhhc
Q 037418           30 AAAIVNFFWGTVLMLPLAI----QYLVDTIIGNYWMLLVSSLAYSAVSYE--YKPEC---IGEGQKILFYTALGLIAFGM  100 (427)
Q Consensus        30 A~~~~~~~~~~~y~~~~~G----G~laD~~lGr~~~i~~g~~~~~~~~~~--~~~~~---~~~~~~~~~~~~l~li~~g~  100 (427)
                      ++.+.+.......++.++.    +.+.|| ++..+.+.+|.++..+....  .....   ....+.+.+.....+.++|.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge  396 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE  396 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence            3333344444555555555    444555 35667788888777762111  11000   01234556778899999999


Q ss_pred             ccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhc-----ee------c--cchhHhHHHHHH
Q 037418          101 SGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFP-----YI------K--PWKIRFGIPAIF  165 (427)
Q Consensus       101 g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~-----~l------~--g~~~~F~i~~v~  165 (427)
                      ++..|...+++.+.-+++.         +.....  +.+.-+|+.++..+..     ..      .  +++..|..-++.
T Consensus       397 ~~~~p~g~s~~~~~aP~~~---------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  467 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQRL---------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIA  467 (500)
T ss_pred             HHHhHHHHHHHHHhCcHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHH
Confidence            9999999999998754422         233333  5555566666655442     11      1  477788766655


Q ss_pred             HHHHHHHHHhccc
Q 037418          166 TVVATLVFLSGTC  178 (427)
Q Consensus       166 ~~i~~iif~~~~~  178 (427)
                      .++..++++...+
T Consensus       468 ~~~~a~~~~~~~~  480 (500)
T PRK09584        468 TAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHH
Confidence            5444444444333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.89  E-value=17  Score=37.55  Aligned_cols=66  Identities=20%  Similarity=0.407  Sum_probs=48.8

Q ss_pred             HHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcc
Q 037418           42 LMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMAD  113 (427)
Q Consensus        42 y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~d  113 (427)
                      -+++++++-+-|. +|.|+++.+|+..+.....+..     ..+...++.+=+++++|.++...---.+..+
T Consensus        64 tv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl-----~~N~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   64 TVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFL-----FPNSYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             HHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHH-----hcchHHHHHHHHHhhhhHHheecccceehhh
Confidence            3567778888998 5999999999999987333322     1245678888999999999776655555544

>PRK03612 spermidine synthase; Provisional

Probab=91.25  E-value=2.7  Score=44.29  Aligned_cols=152  Identities=9%  Similarity=0.062  Sum_probs=80.8

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCC--CCCCCCchhHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYK--PECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~--~~~~~~~~~~~~~   90 (427)
                      .++-.+...+|-+...-+.++++|.+..-++..++|.++++-..++-.+-++..+... ..+.+.  ... ........+
T Consensus        36 ~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~-~~~~~~~~~  114 (521)
T PRK03612         36 LLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAF-QGLSRLLLY  114 (521)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4555555668999999999999999999999999998885543333322222211111 111110  000 000111122


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cc-hhHhHHHH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PW-KIRFGIPA  163 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~-~~~F~i~~  163 (427)
                      ..+.+.++-.|+.-|-+..+..+..++ +.         .+...  |....+|+.+|.++.+++-    |- ...+.++.
T Consensus       115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~~-~~---------g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        115 VLVLLIGLLIGMEIPLLMRILQRIRDQ-HL---------GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc-ch---------hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            223344555555555555444332111 11         11223  8889999999988877664    43 34455555


Q ss_pred             HHHHHHHHHHHhc
Q 037418          164 IFTVVATLVFLSG  176 (427)
Q Consensus       164 v~~~i~~iif~~~  176 (427)
                      +.++++++.....
T Consensus       185 l~~~~a~~~~~~~  197 (521)
T PRK03612        185 LNLLAALVFLWLF  197 (521)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=90.29  E-value=4.8  Score=40.89  Aligned_cols=103  Identities=13%  Similarity=0.042  Sum_probs=61.8

Q ss_pred             HHHHHhhHhcCC---chHHHHHHHH----HHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc--CCCCCCCCc
Q 037418           14 VMITYLTNVWKI---SLVRAAAIVN----FFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE--YKPECIGEG   84 (427)
Q Consensus        14 ~l~~yl~~~l~~---~~~~A~~~~~----~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~--~~~~~~~~~   84 (427)
                      ++-+|+++..+-   +..+++...+    +..-+..+..++-|-+||..--||+.+-....+..+....  ..++   ..
T Consensus        37 ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~---~s  113 (438)
T COG2270          37 IFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP---GS  113 (438)
T ss_pred             hhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC---Cc
Confidence            678899987655   5444444433    2233333444555889999733445555555554442221  2221   13


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcch
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSR  119 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~  119 (427)
                      +++....-+++..++..+-..+-+++.-|..++++
T Consensus       114 ~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~  148 (438)
T COG2270         114 YLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN  148 (438)
T ss_pred             hHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc
Confidence            45555566777888888888889999988766544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=89.65  E-value=1  Score=48.63  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHH-HHHHhhhHHHHhhhcccc--hHHHHHHHHHHHHH
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWG-TVLMLPLAIQYLVDTIIG--NYWMLLVSSLAYSA   71 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~-~~y~~~~~GG~laD~~lG--r~~~i~~g~~~~~~   71 (427)
                      +.+-+.++++. .+..|+++.+|++..+++.+.+.... ...+..+++|++.||+ +  .++++.++.++.++
T Consensus       340 ~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~~~  411 (633)
T TIGR00805       340 VIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLSTL  411 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHHHH
Confidence            45667888888 89999999999999999999887665 4568889999999996 5  55666666655554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=89.64  E-value=0.85  Score=48.70  Aligned_cols=136  Identities=9%  Similarity=-0.033  Sum_probs=87.8

Q ss_pred             Hhc-CC-chHH-HHHHHHHHHHHHHHhhhHHHHhhhcccchHH-------HHHHHHHH-HHH-hhhcCCCCCCCCchhHH
Q 037418           21 NVW-KI-SLVR-AAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW-------MLLVSSLA-YSA-VSYEYKPECIGEGQKIL   88 (427)
Q Consensus        21 ~~l-~~-~~~~-A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~-------~i~~g~~~-~~~-~~~~~~~~~~~~~~~~~   88 (427)
                      +.+ |+ .+++ ...++..++..++++-+.+|++. .++-||+       ++...... +.+ ++....     ......
T Consensus       381 ~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~-----~~p~~~  454 (591)
T PTZ00207        381 TALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSVCIITMLTLFL-----TLPKAA  454 (591)
T ss_pred             HHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHHHHHHHHHHHH-----HCCccH
Confidence            346 66 3332 22378899999999999999998 5555554       33333222 222 333221     111147


Q ss_pred             HHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHH-hhhhcee-------------
Q 037418           89 FYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIA-LIAFPYI-------------  152 (427)
Q Consensus        89 ~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~-~~~~~~l-------------  152 (427)
                      ++++-+++++++|...+...+...+.|. +|.         ..-||  +.+.-+|+.+= -.+.+.+             
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~---------g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C  524 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDP---------AKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVC  524 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cch---------HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCee
Confidence            8999999999999999999999999998 553         34666  77777777653 1223322             


Q ss_pred             -c--cchhHhHHHHHHHHHHHHH
Q 037418          153 -K--PWKIRFGIPAIFTVVATLV  172 (427)
Q Consensus       153 -~--g~~~~F~i~~v~~~i~~ii  172 (427)
                       +  +++..|.+.++..+++.++
T Consensus       525 ~G~~C~~~~~~v~~~~~~~g~~~  547 (591)
T PTZ00207        525 TERVCVVMPLAFLLGLSFLAFIT  547 (591)
T ss_pred             CCceeeHhHHHHHHHHHHHHHHH
Confidence             1  7889997666655555544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=89.02  E-value=14  Score=37.35  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhHHHHHHHHHHHhh
Q 037418           22 VWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKILFYTALGLIAFG   99 (427)
Q Consensus        22 ~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~li~~g   99 (427)
                      ..|.+..++..+......-..+....=|.++|++ ||||...+..+...+  .+....      .+...+.+-..+.+.|
T Consensus       107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s------pnf~~L~~f~~l~~~g  179 (528)
T KOG0253|consen  107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS------PNFASLCVFRALWGFG  179 (528)
T ss_pred             hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC------CCeehhhHHHHHHhcc
Confidence            4578888888887776666677888889999995 999998888777766  333332      3444566667788899


Q ss_pred             cccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHh----hhhceeccchhH-hHHHHHHHHHHHHHHH
Q 037418          100 MSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIAL----IAFPYIKPWKIR-FGIPAIFTVVATLVFL  174 (427)
Q Consensus       100 ~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~----~~~~~l~g~~~~-F~i~~v~~~i~~iif~  174 (427)
                      .|+ -|-..+.-++-.+....-      .....+.+|.  +|.++..    .+..+. ||++- |....-.|+++...++
T Consensus       180 ~gg-~pv~~~~yle~lp~~~r~------~~~V~~~~wa--ig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w  249 (528)
T KOG0253|consen  180 VGG-LPVDSAIYLEFLPSSHRW------LLTVMSFFWA--IGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVW  249 (528)
T ss_pred             CCC-ccHhHHHHHHhccCcCCC------cchhHHHHHH--HHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhh
Confidence            999 888888777765543211      1111111332  3444432    222222 77764 4455555665555554


Q ss_pred             h
Q 037418          175 S  175 (427)
Q Consensus       175 ~  175 (427)
                      .
T Consensus       250 ~  250 (528)
T KOG0253|consen  250 V  250 (528)
T ss_pred             c
Confidence            3

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=88.89  E-value=5.1  Score=40.83  Aligned_cols=137  Identities=12%  Similarity=0.191  Sum_probs=85.7

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHH----HHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTV----LMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKI   87 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~----y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~   87 (427)
                      -...|.+..+ -+..+.+.+++.-....    .+.=.+..++-+| +|.|+.++++..++.+  ....+.      .+++
T Consensus       242 qf~~y~~~~f-~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~------~~~~  313 (412)
T PF01306_consen  242 QFPIYFASFF-QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFA------TNPW  313 (412)
T ss_dssp             HHHHHHHHTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT--------SHH
T ss_pred             HHHHHHHHHh-cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhh------cchH
Confidence            3455555433 34444445554444333    3344456778888 5999999999999988  333332      3556


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec---cchhHhHH
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK---PWKIRFGI  161 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~---g~~~~F~i  161 (427)
                      .+.+.=.+-++-.++.-..+--++++++|++-         ..+.+.   -.+..+|..+-+.++|++.   |++-.|.+
T Consensus       314 ~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl---------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli  384 (412)
T PF01306_consen  314 VISLIKLLHALEFPLLLVAAFKYITAHFDKRL---------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI  384 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG---------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH---------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence            66667777888888888888889999887542         233433   2566777777777888776   88888764


Q ss_pred             HHHHHH
Q 037418          162 PAIFTV  167 (427)
Q Consensus       162 ~~v~~~  167 (427)
                      =+...+
T Consensus       385 mg~iv~  390 (412)
T PF01306_consen  385 MGLIVL  390 (412)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=88.24  E-value=0.79  Score=47.80  Aligned_cols=56  Identities=14%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA   71 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~   71 (427)
                      .|..|.. .||++..+.+.+++.--....+.+++-|++|||+ -++|.+++|+.+..+
T Consensus        33 ll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   33 LLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSV   88 (618)
T ss_pred             HHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHH
Confidence            6778876 5999999999999999999999999999999997 777888888777665

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=86.93  E-value=7.1  Score=39.73  Aligned_cols=145  Identities=13%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             HHHHhhHh-cCCchHHHHH-HHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH--hhhcCCCCCCCCchhHHHH
Q 037418           15 MITYLTNV-WKISLVRAAA-IVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA--VSYEYKPECIGEGQKILFY   90 (427)
Q Consensus        15 l~~yl~~~-l~~~~~~A~~-~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~--~~~~~~~~~~~~~~~~~~~   90 (427)
                      ++-|++++ -|+++.+-+. ++-.++-.....-++.+.+.|. +|.|..++++++...+  .+....      .+...  
T Consensus        26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~------~sv~~--   96 (412)
T PF01770_consen   26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFG------TSVLA--   96 (412)
T ss_pred             chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH------CcHHH--
Confidence            78888887 8999888764 4444444444556667899997 5777788877777665  222121      12222  


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH----HHHHHHHHHHHhhhhceec-cchhHhHHHHHH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS----FCGVVLVPIIALIAFPYIK-PWKIRFGIPAIF  165 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~----Y~~iNiG~~i~~~~~~~l~-g~~~~F~i~~v~  165 (427)
                        |-+.=+-.|...++-.++-+-.|..-|+++    -++-..++    -.+.-+|+++|.++...=. +|...+.++...
T Consensus        97 --mq~~q~~yg~~~a~evay~sYiys~v~~~~----yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~  170 (412)
T PF01770_consen   97 --MQLMQFFYGLATAAEVAYYSYIYSVVDKEH----YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS  170 (412)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHheeecCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence              223333334444444555555565544432    22334444    4566677777776665443 788888888888


Q ss_pred             HHHHHHHHH
Q 037418          166 TVVATLVFL  174 (427)
Q Consensus       166 ~~i~~iif~  174 (427)
                      +.+++++-+
T Consensus       171 ~~~a~~~~~  179 (412)
T PF01770_consen  171 VSLALLIAL  179 (412)
T ss_pred             HHHHHHHHH
Confidence            877776643

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=86.44  E-value=6  Score=41.22  Aligned_cols=169  Identities=11%  Similarity=0.008  Sum_probs=91.7

Q ss_pred             ChhhHHHHHHhHHHHHHHhhHhcC-----Cch------HHH---HHHHH-HHHHHHHHhhhHHHHhhhcccch-HHHHHH
Q 037418            1 LFWADIFAAYAMWVMITYLTNVWK-----ISL------VRA---AAIVN-FFWGTVLMLPLAIQYLVDTIIGN-YWMLLV   64 (427)
Q Consensus         1 ~~~~eRfs~Yg~~~l~~yl~~~l~-----~~~------~~A---~~~~~-~~~~~~y~~~~~GG~laD~~lGr-~~~i~~   64 (427)
                      +++++=|+++|..-+.+|.|+..|     -++      .++   +.... .++....+..++--.+.++ +|+ |++-.+
T Consensus       263 l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~g~~k~~~~~  341 (477)
T TIGR01301       263 LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-WGAGKRLWGI  341 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHH
Confidence            467889999999855577776433     211      122   22222 2222223555555667777 475 455455


Q ss_pred             HHHHHHH---hhhcCCC------CC-------CCCch-hHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhh
Q 037418           65 SSLAYSA---VSYEYKP------EC-------IGEGQ-KILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRS  127 (427)
Q Consensus        65 g~~~~~~---~~~~~~~------~~-------~~~~~-~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~  127 (427)
                      +.++..+   ....+..      +.       ..... .+...+...++++..+.+...-.+++++..++++.+    ..
T Consensus       342 s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~----~G  417 (477)
T TIGR01301       342 VNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAG----QG  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCC----Cc
Confidence            5444443   1111110      00       00011 355556677788888888888889999876643221    11


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhceec-----cchhHhHHHHHHHHHHHHHHHh
Q 037418          128 AKLFFFSFCGVVLVPIIALIAFPYIK-----PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       128 ~~~~~f~Y~~iNiG~~i~~~~~~~l~-----g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      .--..+| .++-+...+..+..+.+.     +-..+|.++++.++++.+.-+.
T Consensus       418 ~~mgilN-~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       418 LSMGVLN-LAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            1123454 445555555444433322     5567888999999888766553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.93  E-value=0.12  Score=49.67  Aligned_cols=102  Identities=8%  Similarity=-0.014  Sum_probs=74.9

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHH-HHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYW-MLLVSSLAYSAVSYEYKPECIGEGQKILFYTAL   93 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~-~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (427)
                      |.+|...+++.+.++-+++++.++--..+.|++|||+-||.+|-|. |++.+.+++.-.+....  .......|....|.
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~--Ggi~~aFw~M~~GR  143 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAA--GGISHAFWTMLAGR  143 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHhhh
Confidence            4566666778888889999999999999999999999999999765 56666555544222111  01134678888899


Q ss_pred             HHHHhhcccccccccchhcccCCcc
Q 037418           94 GLIAFGMSGHLVSIGGFMADQMTDS  118 (427)
Q Consensus        94 ~li~~g~g~~k~~~~~~~~dq~~~~  118 (427)
                      .+.++|.-.....-+.+..--|+.+
T Consensus       144 F~FGIGgESlAVaQN~yav~wFKGK  168 (459)
T KOG4686|consen  144 FLFGIGGESLAVAQNKYAVYWFKGK  168 (459)
T ss_pred             eeeccCchhhhhhhcceeEEEecCc
Confidence            9999998887777777776666554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=83.85  E-value=5.3  Score=40.21  Aligned_cols=123  Identities=15%  Similarity=0.091  Sum_probs=81.1

Q ss_pred             hHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hhhcCCCCCCCCchhHHHHHHHHHHHh
Q 037418           20 TNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VSYEYKPECIGEGQKILFYTALGLIAF   98 (427)
Q Consensus        20 ~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~li~~   98 (427)
                      +..+|+++.|.+.++..-+....+.++.-+...|+..|.-++.+.-..+..+ .+..+.    .......++.++.+-++
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls----~~~~~~~l~~~s~l~sf  364 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS----LARTPVVLYLGSTLKSF  364 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh----ccccchhhhHHHHHHHH
Confidence            4678999999998887777766677777777788887776666555555444 222221    02234678899999999


Q ss_pred             hcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec
Q 037418           99 GMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        99 g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~  153 (427)
                      .++...||+..++..-.+++ .     |......+ --...++=++||.+.+.++
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~-q-----rG~~~Gi~-~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQS-Q-----RGTLNGIF-RSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcc-c-----chHHHHHH-HHHHHHHHHhhhhhhheeE
Confidence            99999999999998755433 2     21222222 2333444567777776665

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.38  E-value=5.3  Score=40.42  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             ecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCc
Q 037418          310 VPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKI  389 (427)
Q Consensus       310 ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~~~~~~~~  389 (427)
                      ....++.....++-++.-|+...+..+...|        .-|.+|++++..|.++.++.+                    
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~--------ipm~~Gl~vmf~sTilFafg~--------------------  157 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYK--------IPMVAGLFVMFLSTILFAFGN--------------------  157 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccc--------cHHHHHHHHHHHHHHHHHHcc--------------------
Confidence            3345666777788888889999888877655        358899999999998877754                    


Q ss_pred             cchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCC
Q 037418          390 PMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPL  425 (427)
Q Consensus       390 ~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~  425 (427)
                        |++.++..-.++|+|..+++..|++...+.-|++
T Consensus       158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d  191 (464)
T KOG3764|consen  158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED  191 (464)
T ss_pred             --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc
Confidence              3445777789999999999999999999998875

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=81.09  E-value=9.6  Score=30.76  Aligned_cols=79  Identities=18%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHH
Q 037418          317 LFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWL  396 (427)
Q Consensus       317 ~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wl  396 (427)
                      ....+..++..|+..++.++..+|        +-+.++..+.+++.+.....                      -+.++.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~--------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~   54 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRK--------PVLLVGLFIFVLSTAMFALS----------------------SNITVL   54 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHh----------------------ccHHHH
Confidence            345566667778887777665444        23444555555554433221                      134455


Q ss_pred             HHHHHHHHHHhHhhhhhhHHHHHhcCCCC
Q 037418          397 LPQFLLLGGFDGVCEVSIACFFIDQFPPL  425 (427)
Q Consensus       397 v~~y~l~~~gEl~~~~~~lef~~~~aP~~  425 (427)
                      ....++.+++.-...+.......+..|++
T Consensus        55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880        55 IIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            56678888888888888888888887764

>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=80.18  E-value=23  Score=32.34  Aligned_cols=98  Identities=18%  Similarity=0.126  Sum_probs=60.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHH
Q 037418          318 FYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMSMFWLL  397 (427)
Q Consensus       318 ~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wlv  397 (427)
                      .|.+...+..++..+..+|..+| .   .+..++..+++-..++....+..-.-........+     +.+.........
T Consensus       107 ~N~l~m~~~~~~~~~~~~~~l~~-~---~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-----~~~~~~~~~~~~  177 (205)
T PF01891_consen  107 ANALNMGVPPVLVSYLLFRLLRR-K---FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-----DYPWMALVQAYL  177 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-c---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccHHHHHHHHH
Confidence            56666666667777777776555 2   23455666666556665554443322222221111     011233444567


Q ss_pred             HHHHHHHHHhHhhhhhhHHHHHhcCCC
Q 037418          398 PQFLLLGGFDGVCEVSIACFFIDQFPP  424 (427)
Q Consensus       398 ~~y~l~~~gEl~~~~~~lef~~~~aP~  424 (427)
                      +.+.++++.|.++.-....+..+.-|+
T Consensus       178 ~~~~~l~~~Eg~ltg~~v~~l~~~rP~  204 (205)
T PF01891_consen  178 PSHLLLAFPEGFLTGMVVTFLVVYRPE  204 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888999999999999999999998886

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
2xut_A	524	Proton/peptide symporter family protein; transport	4e-34

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  132 bits (334), Expect = 4e-34
 Identities = 72/432 (16%), Positives = 127/432 (29%), Gaps = 75/432 (17%)

Query: 7   FAAYAM-WVMITYLTNV------WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNY 59
           F+ Y M  ++  +L          ++    A  + + F   V   PL   ++ D   G Y
Sbjct: 26  FSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY 85

Query: 60  WMLLVSSLAYSAVSYEYKPECIG-------EGQKILFYTALGLIAFGMSGHLVSIGGFMA 112
             +L  SL Y          C+G       E     FYT L LIA G  G    +  FM 
Sbjct: 86  NTILWLSLIY----------CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMG 135

Query: 113 DQ--MTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIKP---WKIRFGIPAIF 165
           DQ   ++       +       F   +  +      A ++ P +       + FGIP + 
Sbjct: 136 DQFDQSNKS-----LAQK---AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187

Query: 166 TVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDEIY 225
             VAT+ F  G   Y    P          V  ++ L            L     V   Y
Sbjct: 188 MFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAY 247

Query: 226 V---VQHTRSLRCLDKAAIILP---DKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLT 279
               +     +  L  A +++          Q     +      ++  + +LR++ +   
Sbjct: 248 ALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFAL 307

Query: 280 FIIPGVVSSIGFTYFLEQADHLNRKVGKLSVP-------LPILLLFYDIARTQFTNLYAK 332
                 +     + ++ QA+     V              P+L++               
Sbjct: 308 VTPFWSLFDQKASTWILQAN---DMVKPQWFEPAMMQALNPLLVML-------LIPFNNF 357

Query: 333 FLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHGLIDKPDDKIPMS 392
            L    E    K          + +  L  I    ++                D    +S
Sbjct: 358 VLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALS 404

Query: 393 MFWLLPQFLLLG 404
           +FW +  + LL 
Sbjct: 405 IFWQILPYALLT 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.91
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.41
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.19
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.93
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.79
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.78
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.35
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.29
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.08
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.62
2xut_A	524	Proton/peptide symporter family protein; transport	95.95

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=1.5e-25  Score=231.63  Aligned_cols=397  Identities=17%  Similarity=0.180  Sum_probs=253.5

Q ss_pred             hhhHHHHHHhHH-HHHHHhhHhcC------CchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhh
Q 037418            2 FWADIFAAYAMW-VMITYLTNVWK------ISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSY   74 (427)
Q Consensus         2 ~~~eRfs~Yg~~-~l~~yl~~~l~------~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~   74 (427)
                      .+.+++++|++. .+..|+++++|      ++..+++.+.+.+.....++++++|+++||++|||+++.++.++..+...
T Consensus        21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~  100 (524)
T 2xut_A           21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA  100 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            467899999999 99999999999      99999999999999999999999999999966999999999888776221


Q ss_pred             cCCCCCCCCc-hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce
Q 037418           75 EYKPECIGEG-QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY  151 (427)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~  151 (427)
                      ....    .. +.+.++++..+.++|.|...|+..++++|.+++++.      ....+.|+  +.+.|+|..+++.++++
T Consensus       101 ~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r------~~~~~~~~~~~~~~~~g~~~g~~~~~~  170 (524)
T 2xut_A          101 FLAI----FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK------SLAQKAFDMFYFTINFGSFFASLSMPL  170 (524)
T ss_dssp             HHHH----TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT------THHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred             HHHH----hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1110    12 567788899999999999999999999999976542      22355655  78899999999999888


Q ss_pred             ec---cchhHhHHHHHHHHHHHHHHHhcccceeecCCCCChhHHHHHHHHHHHhhccCCCCCCCccccccCCccc-cccc
Q 037418          152 IK---PWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDE-IYVV  227 (427)
Q Consensus       152 l~---g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~-~~~~  227 (427)
                      +.   ||++.|.+.++..+++.++++..++++++.+|++++..+..+.+..+.++++.+.+ +...+........ ....
T Consensus       171 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (524)
T 2xut_A          171 LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYAL  249 (524)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHTG
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhhh
Confidence            75   99999999998888887777666555544444433333322232223222211000 0000000000000 0000


Q ss_pred             ccCCCcchhhhhhccCCCccchhccCCcc-------cccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHHH
Q 037418          228 QHTRSLRCLDKAAIILPDKTLEQQEGNRW-------RLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADH  300 (427)
Q Consensus       228 ~~~~~~~~ld~a~~~~~~~~~~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~  300 (427)
                      .+.+....+..+....... .......||       +.++.++.+++|+.....++++....++..+.|..+.+..++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (524)
T 2xut_A          250 VNIPTLGIVAGLCCAMVLV-MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND  328 (524)
T ss_dssp             GGTTTTCSSHHHHHHHHHH-HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhh-hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence            0000000000000000000 000011122       11222234556677777788888888999999988888877776


Q ss_pred             hcCCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 037418          301 LNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHG  380 (427)
Q Consensus       301 ~d~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g  380 (427)
                      +|.+.  + ++.+.+..++++..++..|+.+++..+..+|+++++++.+++.+|+++.+++++.++..+..+     +  
T Consensus       329 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~--  398 (524)
T 2xut_A          329 MVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM-----D--  398 (524)
T ss_dssp             SCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T--
T ss_pred             cCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh-----c--
Confidence            66543  2 467778889999999999999987654444425567778889999999999888776543111     0  


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          381 LIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       381 ~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                            ...+.+.+|+++.+++.++++.+..|...+.+.+.+|+++
T Consensus       399 ------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  438 (524)
T 2xut_A          399 ------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM  438 (524)
T ss_dssp             ------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred             ------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence                  1124578899999999999999999999999999999875

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.91  E-value=1.5e-22  Score=207.18  Aligned_cols=369  Identities=14%  Similarity=0.122  Sum_probs=252.6

Q ss_pred             hhhHHHHHHhHH-HHHHHhhHh-----cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc
Q 037418            2 FWADIFAAYAMW-VMITYLTNV-----WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE   75 (427)
Q Consensus         2 ~~~eRfs~Yg~~-~l~~yl~~~-----l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~   75 (427)
                      .+.++++||++. .+..|+++.     +|.+..+++.+.+.+.....++.+++|+++||++|||+++.++.++..+....
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (491)
T 4aps_A           22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV  101 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            467999999999 999999998     99999999999999999999999999999999569999999999888772221


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418           76 YKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK  153 (427)
Q Consensus        76 ~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~  153 (427)
                      ..    ...+.+.++++..+.++|.|...|+..++++|.+++++.+       +...++  +.+.|+|..+++.+++++.
T Consensus       102 ~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A          102 LA----LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-------RDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             HH----SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc-------ceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            11    0235667888999999999999999999999999875422       345555  7899999999999998876


Q ss_pred             ---cchhHhHHHHHHHHHHHHHHHhcccceeecC--CCCChh--HHHHHHHHH-------------HHhhccCCCCCCCc
Q 037418          154 ---PWKIRFGIPAIFTVVATLVFLSGTCSYRRRK--PLGSPL--TTVFRVFVA-------------SALKLFYRIPRNAS  213 (427)
Q Consensus       154 ---g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~--p~g~pl--~~~~~v~~~-------------a~~~~~~~~~~~~~  213 (427)
                         ||++.|.++++..++++++++..++++.+.+  +..++.  .+..+....             ..... .....+. 
T Consensus       171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~-  248 (491)
T 4aps_A          171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV-GWNSLPA-  248 (491)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH-SSCCTTH-
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc-cCccccc-
Confidence               9999999998888888777665544332221  111111  111110000             00000 0000000 


Q ss_pred             cccccCCcccccccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchh
Q 037418          214 ELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTY  293 (427)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~  293 (427)
                      ..          ...     ..........       .....|+.. ....+++|+.....++++....+|..+.|..+.
T Consensus       249 ~~----------~~~-----~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (491)
T 4aps_A          249 YI----------NLL-----TIVAIAIPVF-------YFAWMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVV  305 (491)
T ss_dssp             HH----------HHH-----HHHHHHHHHH-------HHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTH
T ss_pred             ch----------hhh-----hHHHHHHHHH-------HHHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            00          000     0000000000       000011100 112245677777888998999999999998887


Q ss_pred             HHHHHHH-hcCCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037418          294 FLEQADH-LNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRR  372 (427)
Q Consensus       294 ~~~qa~~-~d~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~  372 (427)
                      +..+..+ .+.+    ..+.+.+..++++..++..|+..++..|+.+|   ++...+++.+|+++.+++++.+...... 
T Consensus       306 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  377 (491)
T 4aps_A          306 LATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN---QPSSPTKFAVGLMFAGLSFLLMAIPGAL-  377 (491)
T ss_dssp             HHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC------CHHHHHHHHHHHHHHHTTTHHHHHH-
T ss_pred             HHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            7666544 3332    15677888999999999999999988887665   4567889999999999999887765421 


Q ss_pred             HhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418          373 LDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL  426 (427)
Q Consensus       373 ~~~~~~~g~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m  426 (427)
                            .+      ...+.+.+|+++.+++.++++.+..|...+++.+..|++.
T Consensus       378 ------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  419 (491)
T 4aps_A          378 ------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF  419 (491)
T ss_dssp             ------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred             ------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence                  11      1234678899999999999999999999999999999874

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=4.3e-12  Score=126.97  Aligned_cols=158  Identities=14%  Similarity=0.154  Sum_probs=120.4

Q ss_pred             hhHHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcC---CCC
Q 037418            3 WADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEY---KPE   79 (427)
Q Consensus         3 ~~eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~---~~~   79 (427)
                      +..-+.++....+..++.+++|.+..+.+.+.+.+.....++.++.|+++||+ ||||+++++.++..+.....   .  
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--  112 (438)
T 3o7q_A           36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAA--  112 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcc--
Confidence            33444444333556678889999999999999999999999999999999995 99999999998888721111   1  


Q ss_pred             CCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----
Q 037418           80 CIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----  153 (427)
Q Consensus        80 ~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----  153 (427)
                        ...+.+.++++..+.++|.|...|...++++|.+++++         |...++  ..+.++|..+++.+++++.    
T Consensus       113 --~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          113 --EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             --HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             --ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              02457788899999999999999999999999987643         233333  6788999999988887663    


Q ss_pred             c-------------------------chhHhHHHHHHHHHHHHHHH
Q 037418          154 P-------------------------WKIRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       154 g-------------------------~~~~F~i~~v~~~i~~iif~  174 (427)
                      +                         |++.|.+.++...+..++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3                         88999766665555544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.41  E-value=9.3e-12  Score=124.90  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=114.5

Q ss_pred             HhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCCCCCCCCchhH
Q 037418           10 YAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYKPECIGEGQKI   87 (427)
Q Consensus        10 Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~~~~~~~~~~~   87 (427)
                      +.+..+..++.+++ .+..+.+.+.+++.....++.+++|+++||+ |||++++++.++..+..  ....+..  ..+.+
T Consensus        45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  120 (451)
T 1pw4_A           45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA--TSSIA  120 (451)
T ss_dssp             TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSS
T ss_pred             HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhc--cccHH
Confidence            33343334445567 9999999999999999999999999999996 99999999998887721  1110000  12456


Q ss_pred             HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---c-chhHhHH
Q 037418           88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---P-WKIRFGI  161 (427)
Q Consensus        88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g-~~~~F~i  161 (427)
                      .++++..+.++|.|...|...++++|.+++++         |.+.+.  ..+.++|.++++.+++++.   | |++.|.+
T Consensus       121 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHCCchh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            78888999999999999999999999987543         344444  7888999999998888753   7 9999998


Q ss_pred             HHHHHHHHHHHH
Q 037418          162 PAIFTVVATLVF  173 (427)
Q Consensus       162 ~~v~~~i~~iif  173 (427)
                      .++..++..++.
T Consensus       192 ~~~~~~~~~~~~  203 (451)
T 1pw4_A          192 PAFCAILVALFA  203 (451)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            887766655444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.19  E-value=1.8e-11  Score=120.19  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=112.0

Q ss_pred             HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHH
Q 037418           17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLI   96 (427)
Q Consensus        17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li   96 (427)
                      ..+.+++|.+..+.+.+.+.+.....++.++.|+++||+ ||||++.++..+..+......    ...+.+.++.+..+.
T Consensus        24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~l~   98 (375)
T 2gfp_A           24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAV----TTSSLTVLIAASAMQ   98 (375)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHH
Confidence            344567999999999999999999999999999999995 999999999888777221111    023567788889999


Q ss_pred             HhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHH
Q 037418           97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATL  171 (427)
Q Consensus        97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~i  171 (427)
                      ++|.|...|...+++.|.+++++         |.+.++  ..+.++|..+++.+++++.   ||+..|.+.++..++..+
T Consensus        99 g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A           99 GMGTGVGGVMARTLPRDLYERTQ---------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSS---------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhhhHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876543         222333  6788999999999988876   899999887777655543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.93  E-value=3.5e-08  Score=100.12  Aligned_cols=115  Identities=9%  Similarity=-0.032  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hh-hcCCCC------------CCCCchhHHHHHHHH
Q 037418           29 RAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VS-YEYKPE------------CIGEGQKILFYTALG   94 (427)
Q Consensus        29 ~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~-~~~~~~------------~~~~~~~~~~~~~l~   94 (427)
                      ..+.+.+++.....++++++|+++||+ |||++++++.+++.+ .+ ....+.            .....+.+.+.++..
T Consensus        56 ~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           56 LLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            344555566666678899999999995 999999999988877 11 111000            001346778999999


Q ss_pred             HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhce
Q 037418           95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPY  151 (427)
Q Consensus        95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~  151 (427)
                      +.++|.|+..+....+++|..+++.      |......+ ..+.++|.+++......
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~-~~~~~~g~~~~~~~~~~  184 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFN-QFAIIFGQLLVYCVNYF  184 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhh-hhhhhhhhhhhhhcchh
Confidence            9999999999999999999876543      11122222 56777777777655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.79  E-value=1.8e-09  Score=108.18  Aligned_cols=145  Identities=9%  Similarity=-0.118  Sum_probs=88.4

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCCCCCCchh-HHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPECIGEGQK-ILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~   91 (427)
                      .+..|+++++|++..+++.+.+.+.....+.++++|+++||+ ||||+++++..+..+. .+......  .... ..+..
T Consensus        29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  105 (417)
T 2cfq_A           29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIF--GPLLQYNILV  105 (417)
T ss_dssp             THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTH--HHHHHTTCCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            688899988999999999999999999999999999999995 9999999887765431 11100000  0000 00122


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec--cchhHhHHHHHHH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK--PWKIRFGIPAIFT  166 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~--g~~~~F~i~~v~~  166 (427)
                      ++.+.+++.|...+...+...+. .++.+++    +...........++|..+++.+++++.  +|+..|.+.++..
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~----~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          106 GSIVGGIYLGFCFNAGAPAVEAF-IEKVSRR----SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCA  177 (417)
T ss_dssp             HHHGGGSSTTHHHHTTHHHHHHH-HHHHHHH----HTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHH-HHHhhhh----cccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            33333344444433333433332 2111111    001111113566888888888888775  8999888766553

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.78  E-value=7.2e-08  Score=96.33  Aligned_cols=160  Identities=15%  Similarity=0.082  Sum_probs=122.8

Q ss_pred             HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhccc-chHHHHHHHHHHHH-HhhhcCCCCCC
Q 037418            5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTII-GNYWMLLVSSLAYS-AVSYEYKPECI   81 (427)
Q Consensus         5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~l-Gr~~~i~~g~~~~~-~~~~~~~~~~~   81 (427)
                      .-++++++. .+..|+++.+|++..+++.+...+.....+..+++|+++||+. |||+.+.++..+.. +.+..+.  ..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  341 (451)
T 1pw4_A          264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--MN  341 (451)
T ss_dssp             HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--SC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH--Hh
Confidence            446677777 7888998889999999999999999999999999999999942 88988888876665 3222221  00


Q ss_pred             CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHH-HHHHHhhhhceec---cc
Q 037418           82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVL-VPIIALIAFPYIK---PW  155 (427)
Q Consensus        82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNi-G~~i~~~~~~~l~---g~  155 (427)
                      ...+.+.+...+.+.+++.+...+...++..|.+++++         +...+.  ....++ |..+++.+.+++.   ||
T Consensus       342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~  412 (451)
T 1pw4_A          342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  412 (451)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            01245666777888888889888888899999887643         334444  677888 9999999988875   89


Q ss_pred             hhHhHHHHHHHHHHHHHHHh
Q 037418          156 KIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       156 ~~~F~i~~v~~~i~~iif~~  175 (427)
                      +..|.+.++..+++.++++.
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          413 DGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999888888777766654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.73  E-value=1.1e-07  Score=94.81  Aligned_cols=154  Identities=16%  Similarity=0.058  Sum_probs=113.8

Q ss_pred             HHHHHhHH-HHHHH-hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCC
Q 037418            6 IFAAYAMW-VMITY-LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGE   83 (427)
Q Consensus         6 Rfs~Yg~~-~l~~y-l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~   83 (427)
                      -++++++. .+..| +++.+|++..+++.+...+.....+..+++|+++||+ |||+.+.++.++..+.......    .
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~----~  345 (438)
T 3o7q_A          271 VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAF----A  345 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH----C
T ss_pred             HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH----c
Confidence            34556666 67788 8888899999999999999999999999999999995 9999999988877662221110    1


Q ss_pred             chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---c-chhHh
Q 037418           84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---P-WKIRF  159 (427)
Q Consensus        84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g-~~~~F  159 (427)
                      .+. .....+.+++++.+...|...++..|.++++  +.      ....+ ....++|..+++.+.+++.   | |+.+|
T Consensus       346 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  415 (438)
T 3o7q_A          346 GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD--TK------YGSSF-IVMTIIGGGIVTPVMGFVSDAAGNIPTAE  415 (438)
T ss_dssp             CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--HH------HHHHH-HHHTTHHHHHHHHHHHHHHHHHTSSGGGG
T ss_pred             CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc------chhhH-HHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            122 2345567888999999999999988888754  11      23333 3355688889998888876   7 99999


Q ss_pred             HHHHHHHHHHHHHHH
Q 037418          160 GIPAIFTVVATLVFL  174 (427)
Q Consensus       160 ~i~~v~~~i~~iif~  174 (427)
                      .+++++.++..+..+
T Consensus       416 ~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          416 LIPALCFAVIFIFAR  430 (438)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988777665554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.35  E-value=1.4e-06  Score=86.99  Aligned_cols=148  Identities=10%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             HHHHHhhHhcCCc---hHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHH
Q 037418           14 VMITYLTNVWKIS---LVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFY   90 (427)
Q Consensus        14 ~l~~yl~~~l~~~---~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~   90 (427)
                      .+..|+.+.++..   ....+...........+..+++|+++||+ |||+++..+..+..+.......    ..+.+.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~  316 (417)
T 2cfq_A          242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF----ATSALEVV  316 (417)
T ss_dssp             HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT----CCSHHHHH
T ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH----hccHHHHH
Confidence            4455766655532   22333444444445556788999999995 9999998888777662211110    12334455


Q ss_pred             HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418           91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI  164 (427)
Q Consensus        91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v  164 (427)
                      +...+.+++.+...+...++..|.++++.         +.+.+.   ..+.++|..+++.+.+++.   ||+..|.+.++
T Consensus       317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~  387 (417)
T 2cfq_A          317 ILKTLHMFEVPFLLVGCFKYITSQFEVRF---------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL  387 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHSCHHH---------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence            55556667777776777788888776532         222222   2455689999999888775   78888988888


Q ss_pred             HHHHHHHHHHh
Q 037418          165 FTVVATLVFLS  175 (427)
Q Consensus       165 ~~~i~~iif~~  175 (427)
                      ..+++.++.+.
T Consensus       388 ~~l~~~~~~~~  398 (417)
T 2cfq_A          388 VALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            77777766543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.29  E-value=9.6e-07  Score=89.50  Aligned_cols=161  Identities=8%  Similarity=-0.065  Sum_probs=110.6

Q ss_pred             HhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHH-----HHHHHHHHhhhcCC-----C
Q 037418           10 YAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLL-----VSSLAYSAVSYEYK-----P   78 (427)
Q Consensus        10 Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~-----~g~~~~~~~~~~~~-----~   78 (427)
                      +.+. .+..|+.+.++.+..+++.+.........+..++.|++.||+ |||+...     ++..+..+....+.     .
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY  378 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344 677788887888867777777777777778888899999995 8875443     56555555222111     0


Q ss_pred             CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec--cch
Q 037418           79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK--PWK  156 (427)
Q Consensus        79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~--g~~  156 (427)
                      ......+.+.+..+..+.++|.+...|...++..|.++++...      .-.+.+ +...++|.++++.+.+++.  ++.
T Consensus       379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g------~~~g~~-~~~~~~g~~i~~~~~~~~~~~~~~  451 (491)
T 4aps_A          379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS------QMMSMW-FLSSSVGSALNAQLVTLYNAKSEV  451 (491)
T ss_dssp             CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS------SSTHHH-HHHHHHHHHHHHHHGGGGGGSSTT
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHhcccHH
Confidence            0011234566777888999999999999999999988765321      122333 6788999999999999887  888


Q ss_pred             hHhHHHHHHHHHHHHHHHhccc
Q 037418          157 IRFGIPAIFTVVATLVFLSGTC  178 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif~~~~~  178 (427)
                      ..|.+.++..+++.++++...+
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          452 AYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777777766665444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.08  E-value=2.9e-05  Score=78.38  Aligned_cols=164  Identities=10%  Similarity=-0.011  Sum_probs=97.4

Q ss_pred             HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCC-CCCCCCchhHHHHHHH
Q 037418           15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYK-PECIGEGQKILFYTAL   93 (427)
Q Consensus        15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~l   93 (427)
                      ...++.+..+.+..++............+..++++++.||+ |||+.++.+...+.+.+..+. ......... ...+++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~  376 (491)
T 4gc0_A          299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSM  376 (491)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH-HHHHHH
T ss_pred             cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcccchH-HHHHHH
Confidence            33445566788888887777777777888999999999995 999999988877766221110 000001121 222222


Q ss_pred             HHHH-hhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---------cchhHhHH
Q 037418           94 GLIA-FGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---------PWKIRFGI  161 (427)
Q Consensus        94 ~li~-~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---------g~~~~F~i  161 (427)
                      .+.. ....+.-|....+.+|.++.+-         |.....  +...++|+++++.+.+++.         ++...|.+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~---------R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i  447 (491)
T 4gc0_A          377 LFYVAAFAMSWGPVCWVLLSEIFPNAI---------RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI  447 (491)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHSSCTTT---------HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            2222 1122234566678899997653         344444  6777888888887777664         34455666


Q ss_pred             HHHHHHHHHHHHHhcccceeecCCCCChhHHHH
Q 037418          162 PAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVF  194 (427)
Q Consensus       162 ~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~  194 (427)
                      -++..+++.+...+.   +  .+.+|.++.++-
T Consensus       448 ~~~~~~~~~i~~~~~---~--PETkg~tLeei~  475 (491)
T 4gc0_A          448 YGCMGVLAALFMWKF---V--PETKGKTLEELE  475 (491)
T ss_dssp             HHHHHHHHHHHHHHH---C--CCCTTCCHHHHG
T ss_pred             HHHHHHHHHHHHHhe---e--cCCCCCCHHHHH
Confidence            555555555443321   1  234566776643

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.62  E-value=3.3e-05  Score=75.13  Aligned_cols=147  Identities=7%  Similarity=-0.107  Sum_probs=97.6

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHH-HHHhhhcCCCCCCCCc
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLA-YSAVSYEYKPECIGEG   84 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~-~~~~~~~~~~~~~~~~   84 (427)
                      ++++++. .+..|+++.+|++..+++.+.........+..++.|+++||. |+  .+..+... ....+...........
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
T 2gfp_A          213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLLAGLLMWIPDWFGVM  289 (375)
T ss_dssp             HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH--HHHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhhhccc
Confidence            4445555 556677777899999999999888888888888899999985 66  33334333 2221111100000012


Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHh
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRF  159 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F  159 (427)
                      +.+.+..+..+.+++.|...|...++..|..+ +   +      +.+.+.  ....++|..+++.+.+.+.   +|...|
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~---~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  359 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F---L------AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL  359 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H---H------HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c---c------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            44556677888899999999999999998764 2   1      233443  5778899999888888775   677777


Q ss_pred             HHHHHHH
Q 037418          160 GIPAIFT  166 (427)
Q Consensus       160 ~i~~v~~  166 (427)
                      .+.++..
T Consensus       360 ~~~~~~~  366 (375)
T 2gfp_A          360 LMTLMGL  366 (375)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6654443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.95  E-value=0.0055  Score=62.12  Aligned_cols=87  Identities=17%  Similarity=0.115  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec-----cc----
Q 037418           85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK-----PW----  155 (427)
Q Consensus        85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~-----g~----  155 (427)
                      +.+.+.++..+.++|.+...|...++..|..+++..      ....+.+ +...++|..+++.+.+++.     +|    
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~------g~~~g~~-~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~  476 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK------GTIMSFW-TLSVTVGNLWVLLANVSVKSPTVTEQIVQT  476 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC------TTTHHHH-GGGHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------hHHHHHH-HHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            455666788899999999999999999998876431      1123333 5677888888888888775     23    


Q ss_pred             -----hhHhHHHHHHHHHHHHHHHhccc
Q 037418          156 -----KIRFGIPAIFTVVATLVFLSGTC  178 (427)
Q Consensus       156 -----~~~F~i~~v~~~i~~iif~~~~~  178 (427)
                           +..|.+.++..+++.++++...+
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          477 GMSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                 23366666666666666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	427
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.41
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.39
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.32
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.2e-11  Score=120.82  Aligned_cols=148  Identities=14%  Similarity=0.078  Sum_probs=111.3

Q ss_pred             HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCCCCCCCCchhHHHHH
Q 037418           14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYKPECIGEGQKILFYT   91 (427)
Q Consensus        14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~   91 (427)
                      .+..++. ++|++.++.+.+.+++.....++.+++|+++||+ |||+++.++.++..+..  ....+..  ..+.+.+++
T Consensus        46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  121 (447)
T d1pw4a_          46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAVMFV  121 (447)
T ss_dssp             HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSHHHH
T ss_pred             HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchh--hhhHHHHHH
Confidence            3445665 5899999999999999999999999999999995 99999999988877621  1111000  123567788


Q ss_pred             HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----cchhHhHHHHHH
Q 037418           92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK----PWKIRFGIPAIF  165 (427)
Q Consensus        92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~----g~~~~F~i~~v~  165 (427)
                      +..+.++|.|...+...++++|.+++++         |...++  ..+.++|..+++.+.+.+.    +|++.|.+.++.
T Consensus       122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~  192 (447)
T d1pw4a_         122 LLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC  192 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHhhc---------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence            8899999999999999999999886543         333444  6778888888877666543    899998887766


Q ss_pred             HHHHHHHHH
Q 037418          166 TVVATLVFL  174 (427)
Q Consensus       166 ~~i~~iif~  174 (427)
                      .++..++.+
T Consensus       193 ~~~~~~~~~  201 (447)
T d1pw4a_         193 AILVALFAF  201 (447)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=4.3e-12  Score=121.33  Aligned_cols=68  Identities=18%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             hhHHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH
Q 037418            3 WADIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA   71 (427)
Q Consensus         3 ~~eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~   71 (427)
                      |...+++.... .+..|+++++|.|.++.+.+.+++.....+++++.|+++||+ ||||+++++.....+
T Consensus        17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_          17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            34444544445 788899999999999999999999999999999999999995 999999998877766

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=3.4e-06  Score=81.11  Aligned_cols=156  Identities=13%  Similarity=0.054  Sum_probs=106.0

Q ss_pred             HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHH---HhhhcCCCCCCC
Q 037418            7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYS---AVSYEYKPECIG   82 (427)
Q Consensus         7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~---~~~~~~~~~~~~   82 (427)
                      ...+++. .+..|+.+.++++..+++.....+.....+..+++|+++||. +|++..........   +......  ...
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~  339 (447)
T d1pw4a_         263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYW--MNP  339 (447)
T ss_dssp             HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTT--SCC
T ss_pred             hhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHHH--hcc
Confidence            3445555 677888888999999999999999999999999999999996 55432222222211   1111111  001


Q ss_pred             CchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHH-HHHHHhhhhceec---cch
Q 037418           83 EGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVL-VPIIALIAFPYIK---PWK  156 (427)
Q Consensus        83 ~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNi-G~~i~~~~~~~l~---g~~  156 (427)
                      ..+.+...+.+.+++++.++..+....+..|.++++.         +.....  +...++ |.++++.+.+++.   ||+
T Consensus       340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~  410 (447)
T d1pw4a_         340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  410 (447)
T ss_dssp             TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            2345666677788888888888999999999887543         233333  455666 4566788888765   899


Q ss_pred             hHhHHHHHHHHHHHHHHH
Q 037418          157 IRFGIPAIFTVVATLVFL  174 (427)
Q Consensus       157 ~~F~i~~v~~~i~~iif~  174 (427)
                      ..|.+.+++.+++.++..
T Consensus       411 ~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         411 GGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888877776666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.1e-06  Score=82.60  Aligned_cols=138  Identities=10%  Similarity=-0.032  Sum_probs=101.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHhhcccc
Q 037418           24 KISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLIAFGMSGH  103 (427)
Q Consensus        24 ~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~g~g~~  103 (427)
                      +.+....+...........+...+.|++.||+ |+++++.++..+..+......    ...+.+.+.+...+.+++.|..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSS----FATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccc----cccccchhhHHHHHHHHHHHHH
Confidence            44455566666667777778888999999995 999999999888776222111    0235667778888999999999


Q ss_pred             cccccchhcccCCcchhhhhhhhhhHHHHHH-H--HHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHHHHHh
Q 037418          104 LVSIGGFMADQMTDSRAEQVSMRSAKLFFFS-F--CGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATLVFLS  175 (427)
Q Consensus       104 k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~-Y--~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~iif~~  175 (427)
                      .+...++..|.++++.         +.+.+. +  .+.++|..+++.+.+++.   ||+..|.+.++..+++.++.++
T Consensus       330 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         330 LVGCFKYITSQFEVRF---------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHSCGGG---------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887643         233444 2  345688899998888876   9999998887777766665544