Citrus Sinensis ID: 037422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK
Secondary Structure (PSIPRED)
cccccHHHcccccccccccccccccccccccccccEEEEEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEcccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccEEEEEEEcccEEEcccccccccEEEEEEEcccHHHHcEEEccccccEEEEccc
Coil and Loop (DISEMBL)
MGLLEIKAFIKSVSDMQYADAILVSWVdnrtsdccswerikcnattgWVMELSLSDAirvnsndvsdgfpiinmslfvpfqelHVLDLWNnrfegweenk
Flexible Loop (DISEMBL)
MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK
Low Complexity Region (SEG)
MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK
Disordered region (IsUnstruct)
***LEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGW****
Disordered Region (DISOPRED)
MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN*
Disordered Region (DISEMBL)
MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK
Disordered Region (DISPRO)
MGLLEIKAFIKSVSDMQ*ADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
297743513	1185	unnamed protein product [Vitis vinifera]	0.97	0.081	0.481	9e-19
359482735	1097	PREDICTED: receptor-like protein 12-like	0.97	0.088	0.5	1e-18
297743514	1157	unnamed protein product [Vitis vinifera]	0.98	0.084	0.476	3e-18
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.97	0.094	0.481	4e-18
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.98	0.091	0.476	4e-18
359483099	1231	PREDICTED: probable LRR receptor-like se	0.97	0.078	0.5	6e-18
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.97	0.084	0.472	8e-18
359482731	918	PREDICTED: probable LRR receptor-like se	0.97	0.105	0.472	1e-17
297745134	168	unnamed protein product [Vitis vinifera]	0.97	0.577	0.5	1e-17
359482740	1093	PREDICTED: receptor-like protein 12-like	0.98	0.089	0.467	2e-17

>gi|297743513|emb|CBI36380.3| unnamed protein product [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 73/108 (67%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L L+D  R 
Sbjct: 1   MGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFLNDITR- 57

Query: 61  NSNDVSDG--------FPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N + D         F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 58  QQNFLEDDWYHYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 76/108 (70%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K ++D ++AD +L SW+DN TS+CC+WER+ CN TTG V +L L+D IR 
Sbjct: 32  MGLLEFKAFLK-LND-EHADFLLPSWLDNNTSECCNWERVICNPTTGQVKKLFLND-IRQ 88

Query: 61  NSNDVSDG--------FPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N + D         F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 89  QQNFLEDNWYYYENAKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743514|emb|CBI36381.3| unnamed protein product [Vitis vinifera]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 72/105 (68%), Gaps = 7/105 (6%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L  +D  R 
Sbjct: 1   MGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFFNDITRQ 58

Query: 61  NSND-----VSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
           +  D      +  F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 59  HLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L L+D  R 
Sbjct: 32  MGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFLNDITR- 88

Query: 61  NSNDVSD--------GFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N + D         F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 89  QQNFLEDDWYHYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 72/105 (68%), Gaps = 7/105 (6%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L  +D  R 
Sbjct: 32  MGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFFNDITRQ 89

Query: 61  NSND-----VSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
           +  D      +  F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 90  HLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K ++D  +AD +L SW+DN  SDCC+WER+ CN TTG V +LSL+D IR 
Sbjct: 32  MGLLEFKAFLK-LND-GHADFLLPSWIDNNISDCCNWERVICNPTTGRVKKLSLND-IRQ 88

Query: 61  NSNDV--------SDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N +        +  F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 89  QQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L  +D  R 
Sbjct: 32  MGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFFNDITR- 88

Query: 61  NSNDVSDG--------FPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N + D         F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 89  QQNFLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482731|ref|XP_003632819.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 73/108 (67%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF++   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L L+D  R 
Sbjct: 1   MGLLEFKAFLEL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFLNDITR- 57

Query: 61  NSNDVSD--------GFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N + D         F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 58  QQNFLEDDWYDYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745134|emb|CBI38973.3| unnamed protein product [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 11/108 (10%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K ++D  +AD +L SW+DN  SDCC+WER+ CN TTG V +LSL+D IR 
Sbjct: 1   MGLLEFKAFLK-LND-GHADFLLPSWIDNNISDCCNWERVICNPTTGRVKKLSLND-IRQ 57

Query: 61  NSNDV--------SDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
             N +        +  F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 58  QQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482740|ref|XP_003632823.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 72/107 (67%), Gaps = 9/107 (8%)

Query: 1   MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
           MGLLE KAF+K   + ++AD +L SW+DN TS+CC+WER+ CN TTG V +L L+D  + 
Sbjct: 1   MGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNWERVICNPTTGRVKKLFLNDITQQ 58

Query: 61  NS-------NDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEENK 100
            S          +  F ++N+SLF+PF+ELH L+L  N F+G+ EN+
Sbjct: 59  QSFLEDNWYQYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.85	0.093	0.393	3.9e-11
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.87	0.093	0.391	1.8e-10
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.86	0.079	0.364	4.2e-10
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.86	0.088	0.364	1.3e-09
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.3	0.042	0.580	2.2e-07
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.62	0.069	0.420	2.6e-07
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.29	0.032	0.580	3e-07
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.85	0.088	0.284	3.7e-07
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.49	0.058	0.442	4.1e-07
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.29	0.030	0.580	8.9e-07

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 37/94 (39%), Positives = 58/94 (61%)

Query:     3 LLEIKAFIKS-VSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVN 61
             LLE+K F+ S   + +Y D++L +W ++  SDCC WE IKCN T+  +  LSL  +  + 
Sbjct:    21 LLELKKFVMSRCEECEY-DSVLPTWTNDTKSDCCQWENIKCNRTSRRLTGLSLYTSYYL- 78

Query:    62 SNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG 95
               ++S    ++N+SL  PF+E+  LDL N+R  G
Sbjct:    79 --EIS----LLNLSLLHPFEEVRSLDLSNSRLNG 106

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 38/97 (39%), Positives = 56/97 (57%)

Query:     3 LLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNS 62
             LLE+K ++ S S     D +L +W ++  SDCC W+ IKCN T+G V+ELS+ D     S
Sbjct:    21 LLELKKYLMSRSRESGLDYVLPTWTNDTKSDCCQWDGIKCNRTSGRVIELSVGDMYFKES 80

Query:    63 NDVSDGFPIINMSLFVPFQELHVLDLWN---NRFEGW 96
             +      P+ N+SL  PF+E+  L+L     N F G+
Sbjct:    81 S------PL-NLSLLHPFEEVRSLNLSTEGYNEFNGF 110

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 35/96 (36%), Positives = 55/96 (57%)

Query:     1 MGLLEIKAFIKSVSDMQYAD----AILVSWVDNRTSDCCSWERIKCN-ATTGWVMELSLS 55
             MGLL++K+++K++ D +  +    +IL SW  +   DCC WER+KC+ A  G V+ LSL 
Sbjct:     1 MGLLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE-GDCCRWERVKCSDAINGHVIGLSLD 59

Query:    56 DAIRVNSNDVSDGFPIINMSLFVPFQELHVLDL-WN 90
               + V     +     +N+SL   F +L  L+L WN
Sbjct:    60 RLVPVAFESQTRS---LNLSLLHSFPQLQSLNLSWN 92

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 35/96 (36%), Positives = 57/96 (59%)

Query:     3 LLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNS 62
             LLE+K ++ S +     D++L +W ++  S+CC WE +KCN T+G ++ELS+    + N 
Sbjct:    35 LLELKKYMISKTADWGLDSVLPTWTNDTKSNCCRWEGLKCNQTSGRIIELSIG---QTNF 91

Query:    63 NDVSDGFPIINMSLFVPFQELHVLDLWN---NRFEG 95
              + S    ++N+SL  PF+EL  L+L     N F G
Sbjct:    92 KESS----LLNLSLLHPFEELRSLNLSGEIYNEFNG 123

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query:    25 SWVDNRTSDCCSWERIKCNATTGWVMELSLS 55
             SW  N  SDCC+WE + CNA +G V+EL LS
Sbjct:    74 SW-GNNNSDCCNWEGVTCNAKSGEVIELDLS 103

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query:    34 CCSWERIKCNATTGWVMELSLS-DAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNR 92
             CC W RIKC+ T+  V+ +SLS ++IR       D  P +N++ F PF+EL  L+L +  
Sbjct:     7 CCHWRRIKCDITSKRVIGISLSLESIRP-----PDPLPQLNLTFFYPFEELQSLNLSSGY 61

Query:    93 FEGW-EENK 100
             F+GW +E K
Sbjct:    62 FKGWFDERK 70

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query:    25 SWVDNRTSDCCSWERIKCNATTGWVMELSLS 55
             SW +N  SDCC+WE + CNA +G V+EL+LS
Sbjct:    12 SWGNN--SDCCNWEGVTCNAKSGEVIELNLS 40

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 27/95 (28%), Positives = 55/95 (57%)

Query:     1 MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRV 60
             + L E++  + S ++   ++++L +W ++ TSDCC W+ + CN  +G V E+S    + +
Sbjct:    33 IALFELRKHMISRTE---SESVLPTWTNDTTSDCCRWKGVACNRVSGRVTEISFG-GLSL 88

Query:    61 NSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG 95
               N       ++N+SL  PF+++  L+L ++R  G
Sbjct:    89 KDNS------LLNLSLLHPFEDVRSLNLSSSRCSG 117

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query:     3 LLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSL 54
             LLE+K      S+  +    L SW  N+T DCCSWE + C+AT G V+ L+L
Sbjct:    45 LLELKKEFPIHSNGSHHVTTL-SW--NKTVDCCSWEGVTCDATLGEVISLNL 93

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query:    25 SWVDNRTSDCCSWERIKCNATTGWVMELSLS 55
             SW +N  SDCC+WE + CNA +G V+EL LS
Sbjct:    75 SWGNN--SDCCNWEGVTCNAKSGEVIELDLS 103

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010193001 SubName- Full=Chromosome undetermined scaffold_1978, whole genome shotgun sequence; (174 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.14
PLN03150	623	hypothetical protein; Provisional	98.68
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.43
PLN03150	623	hypothetical protein; Provisional	97.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.78
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.59
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.07
smart00370	26	LRR Leucine-rich repeats, outliers.	94.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	93.52
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.29
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	92.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	89.06
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.37

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.14  E-value=1e-10  Score=90.82  Aligned_cols=87  Identities=30%  Similarity=0.467  Sum_probs=57.6

Q ss_pred             hHHHHHhhcccCCcccccccccCCcccCCCCCCceeeeEEecCCCCcEEEEEcCcC-CcCC--------CCCCC------
Q 037422            2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDA-IRVN--------SNDVS------   66 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~w~gi~C~~~~~~v~~l~l~~~-~~~~--------~~l~~------   66 (100)
                      +|++||+.+.++   .   ..+.+|.  ...+||.|.||.|+. .++|+.|++.++ +.+.        +.+..      
T Consensus        33 ~l~~~~~~~~~~---~---~~~~~w~--~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         33 LLLSFKSSINDP---L---KYLSNWN--SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             HHHHHHHhCCCC---c---ccCCCCC--CCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            688999988655   2   1467895  567899999999975 579999999986 3331        00000      


Q ss_pred             --CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           67 --DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        67 --~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                        .|.  +|..++..+++|++|+|++|+|+|.||.
T Consensus       104 ~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113        104 QLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             ccCCc--CChHHhccCCCCCEEECcCCccccccCc
Confidence              233  4444434667777777777777776663

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=4.2e-08  Score=73.99  Aligned_cols=83  Identities=27%  Similarity=0.391  Sum_probs=54.2

Q ss_pred             hHHHHHhhcccCCcccccccccCCcccCCCCCCc-----eeeeEEecCC--C--CcEEEEEcCcC-CcCC--------CC
Q 037422            2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC-----SWERIKCNAT--T--GWVMELSLSDA-IRVN--------SN   63 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C-----~w~gi~C~~~--~--~~v~~l~l~~~-~~~~--------~~   63 (100)
                      +|+.+|+.+..+        ...+|.   + ++|     .|.||.|...  .  .+|+.|+|.++ +.|.        ..
T Consensus       376 aL~~~k~~~~~~--------~~~~W~---g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~  443 (623)
T PLN03150        376 ALQTLKSSLGLP--------LRFGWN---G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH  443 (623)
T ss_pred             HHHHHHHhcCCc--------ccCCCC---C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence            577788777543        123784   2 445     6999999521  1  25889999887 5441        01


Q ss_pred             CC-----C---CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           64 DV-----S---DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        64 l~-----~---~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      |.     .   .|.  +|..+ +.+++|+.|||++|+|+|.||.
T Consensus       444 L~~L~Ls~N~l~g~--iP~~~-~~l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        444 LQSINLSGNSIRGN--IPPSL-GSITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             CCEEECCCCcccCc--CChHH-hCCCCCCEEECCCCCCCCCCch
Confidence            10     0   344  65554 8888899999999999988885

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.50  E-value=9.9e-08  Score=48.06  Aligned_cols=37  Identities=32%  Similarity=0.681  Sum_probs=23.9

Q ss_pred             ChHHHHHhhcccCCcccccccccCCcccCC-CCCCceeeeEEec
Q 037422            1 MGLLEIKAFIKSVSDMQYADAILVSWVDNR-TSDCCSWERIKCN   43 (100)
Q Consensus         1 ~~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~-~~~~C~w~gi~C~   43 (100)
                      ++|++||+.+..+  ..   ..+.+|.. . ..+||.|.||.|+
T Consensus         6 ~aLl~~k~~l~~~--~~---~~l~~W~~-~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    6 QALLAFKKSLNND--PS---GVLSSWNP-SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHCTT-S--C----CCCTT--T-T--S-CCCSTTEEE-
T ss_pred             HHHHHHHHhcccc--cC---cccccCCC-cCCCCCeeeccEEeC
Confidence            3799999999853  11   25889962 2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.43  E-value=5.9e-05  Score=32.46  Aligned_cols=18  Identities=28%  Similarity=0.270  Sum_probs=16.0

Q ss_pred             CCcEEeCcCCccccccCCC
Q 037422           82 ELHVLDLWNNRFEGWEENK  100 (100)
Q Consensus        82 ~L~~L~Ls~N~~sG~iP~~  100 (100)
                      +|++|||++|+|+ .||++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            4899999999999 89974

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PLN03150 hypothetical protein; Provisional

Probab=97.02  E-value=0.00045  Score=52.49  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=25.7

Q ss_pred             CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           67 DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        67 ~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      .|.  +|.. ++.|++|+.|+|++|.|+|.||.
T Consensus       479 sg~--iP~~-l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        479 NGS--IPES-LGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             CCC--CchH-HhcCCCCCEEECcCCcccccCCh
Confidence            555  6555 49999999999999999999995

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.78  E-value=0.0011  Score=33.36  Aligned_cols=35  Identities=29%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             EEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422           49 VMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        49 v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s   94 (100)
                      ++.|++.++     .+  . .  +++.+ ..|++|+.|+|++|.++
T Consensus         3 L~~L~l~~N-----~i--~-~--l~~~l-~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNN-----QI--T-D--LPPEL-SNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSS-----S---S-S--HGGHG-TTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCC-----CC--c-c--cCchH-hCCCCCCEEEecCCCCC
Confidence            556777775     55  2 2  76654 99999999999999987

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.04  E-value=0.0062  Score=32.22  Aligned_cols=22  Identities=36%  Similarity=0.464  Sum_probs=14.6

Q ss_pred             cCCCCCCCCCCCcEEeCcCCcc
Q 037422           72 INMSLFVPFQELHVLDLWNNRF   93 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~   93 (100)
                      +++..|..+++|++|++++|++
T Consensus        40 i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   40 IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             EETTTTTTSTTESEEEETSSSB
T ss_pred             cCHHHHcCCCCCCEEeCcCCcC
Confidence            4455557777777777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.78  E-value=0.0092  Score=31.53  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +++.|++.++     .+  . .  +++..|..+++|++|++++|.++.
T Consensus         2 ~L~~L~l~~n-----~l--~-~--i~~~~f~~l~~L~~L~l~~N~l~~   39 (61)
T PF13855_consen    2 NLESLDLSNN-----KL--T-E--IPPDSFSNLPNLETLDLSNNNLTS   39 (61)
T ss_dssp             TESEEEETSS-----TE--S-E--ECTTTTTTGTTESEEEETSSSESE
T ss_pred             cCcEEECCCC-----CC--C-c--cCHHHHcCCCCCCEeEccCCccCc
Confidence            4567777775     44  2 2  777677999999999999999974

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.59  E-value=0.0076  Score=24.15  Aligned_cols=14  Identities=50%  Similarity=0.688  Sum_probs=9.6

Q ss_pred             CCCcEEeCcCCccc
Q 037422           81 QELHVLDLWNNRFE   94 (100)
Q Consensus        81 ~~L~~L~Ls~N~~s   94 (100)
                      ++|+.|+|++|+|+
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            47899999999975

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.57  E-value=0.0098  Score=46.95  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=19.0

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +|..+ ..++.|+.|++++|.++|.||.
T Consensus       563 ~p~~l-~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        563 IPKNL-GNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             CChhH-hcCcccCEEeccCCcceeeCCC
Confidence            54443 6777777777777777777774

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.07  E-value=0.012  Score=25.37  Aligned_cols=17  Identities=35%  Similarity=0.339  Sum_probs=12.1

Q ss_pred             CCCCcEEeCcCCccccc
Q 037422           80 FQELHVLDLWNNRFEGW   96 (100)
Q Consensus        80 l~~L~~L~Ls~N~~sG~   96 (100)
                      +++|+.|+|++|.++..
T Consensus         1 ~~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDE   17 (24)
T ss_dssp             -TT-SEEE-TSSBEHHH
T ss_pred             CCCCCEEEccCCcCCHH
Confidence            46899999999998764

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.42  E-value=0.036  Score=24.23  Aligned_cols=15  Identities=40%  Similarity=0.580  Sum_probs=13.0

Q ss_pred             CCCCcEEeCcCCccc
Q 037422           80 FQELHVLDLWNNRFE   94 (100)
Q Consensus        80 l~~L~~L~Ls~N~~s   94 (100)
                      |++|+.|+|+.|.++
T Consensus         1 L~~L~~L~L~~N~l~   15 (26)
T smart00370        1 LPNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCCEEECCCCcCC
Confidence            578999999999875

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.42  E-value=0.036  Score=24.23  Aligned_cols=15  Identities=40%  Similarity=0.580  Sum_probs=13.0

Q ss_pred             CCCCcEEeCcCCccc
Q 037422           80 FQELHVLDLWNNRFE   94 (100)
Q Consensus        80 l~~L~~L~Ls~N~~s   94 (100)
                      |++|+.|+|+.|.++
T Consensus         1 L~~L~~L~L~~N~l~   15 (26)
T smart00369        1 LPNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCCEEECCCCcCC
Confidence            578999999999875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=93.52  E-value=0.055  Score=39.65  Aligned_cols=37  Identities=24%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s   94 (100)
                      ..++|+|+.+     .+     ..||+.-|..+++|+.||||.|+++
T Consensus        68 ~tveirLdqN-----~I-----~~iP~~aF~~l~~LRrLdLS~N~Is  104 (498)
T KOG4237|consen   68 ETVEIRLDQN-----QI-----SSIPPGAFKTLHRLRRLDLSKNNIS  104 (498)
T ss_pred             cceEEEeccC-----Cc-----ccCChhhccchhhhceecccccchh
Confidence            4577777775     44     1277777899999999999999875

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.29  E-value=0.07  Score=23.99  Aligned_cols=14  Identities=43%  Similarity=0.562  Sum_probs=12.1

Q ss_pred             CCCcEEeCcCCccc
Q 037422           81 QELHVLDLWNNRFE   94 (100)
Q Consensus        81 ~~L~~L~Ls~N~~s   94 (100)
                      +.|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57899999999984

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=92.96  E-value=0.093  Score=23.39  Aligned_cols=15  Identities=33%  Similarity=0.538  Sum_probs=12.7

Q ss_pred             CCCCcEEeCcCCccc
Q 037422           80 FQELHVLDLWNNRFE   94 (100)
Q Consensus        80 l~~L~~L~Ls~N~~s   94 (100)
                      |++|+.|+|++|.++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            568999999999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.06  E-value=0.25  Score=36.60  Aligned_cols=22  Identities=32%  Similarity=0.305  Sum_probs=20.1

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~s   94 (100)
                      |||.+ +++.+|+.|+|++|.|.
T Consensus       520 IPp~L-gnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  520 IPPIL-GNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CChhh-ccccceeEEEecCCccC
Confidence            77765 99999999999999998

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.37  E-value=0.37  Score=21.48  Aligned_cols=15  Identities=27%  Similarity=0.419  Sum_probs=12.4

Q ss_pred             CCCcEEeCcCCcccc
Q 037422           81 QELHVLDLWNNRFEG   95 (100)
Q Consensus        81 ~~L~~L~Ls~N~~sG   95 (100)
                      .+|+.|++++|+|+.
T Consensus         2 ~~L~~L~vs~N~Lt~   16 (26)
T smart00364        2 PSLKELNVSNNQLTS   16 (26)
T ss_pred             cccceeecCCCcccc
Confidence            368899999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 18/93 (19%)

Query: 3  LLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDAIRVNS 62
          L+  K  +           +L  W  +   + C+++ + C      V  + LS      S
Sbjct: 17 LISFKDVLPD-------KNLLPDW--SSNKNPCTFDGVTCR--DDKVTSIDLS------S 59

Query: 63 NDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG 95
            ++ GF  ++ SL      L  L L N+   G
Sbjct: 60 KPLNVGFSAVSSSLL-SLTGLESLFLSNSHING 91

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 42/120 (35%)

Query: 3   LLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC--SWERIKCNATTGW--VMELSLSDAI 58
           LL+IK     + +       L SW    T+DCC  +W  + C+  T    V  L LS   
Sbjct: 11  LLQIKK---DLGN----PTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS--- 58

Query: 59  RVNSNDVSDGFPI------------INMSLF------VP-----FQELHVLDLWNNRFEG 95
                ++   +PI            + +         +P       +LH L + +    G
Sbjct: 59  ---GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.26
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.23
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.1
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	96.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.89
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.42
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.4
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	95.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.5
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	95.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.32
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	95.24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	95.22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	95.14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	95.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	94.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	94.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	94.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	94.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	94.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	94.47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	94.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	94.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	94.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.36
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	94.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	94.31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	94.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	94.19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	94.17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	94.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	93.98
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	93.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	93.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	93.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	93.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	93.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	93.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	93.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	93.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	93.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	93.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	93.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	93.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	93.33
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	93.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	93.17
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	93.16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	93.13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	93.11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	93.11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	93.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	92.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	92.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	92.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.77
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	92.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	92.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	92.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	92.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	92.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	92.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	92.47
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	92.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	92.35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	92.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	92.25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	92.23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	91.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	91.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	91.62
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	91.01
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	90.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	90.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	90.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	90.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	90.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	90.02
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	88.99
1o6v_A	466	Internalin A; bacterial infection, extracellular r	88.22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	88.07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	87.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	86.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	85.99
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	85.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	84.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	84.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	83.96
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	83.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	83.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	81.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	81.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	80.69

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.36  E-value=8.5e-13  Score=99.12  Aligned_cols=86  Identities=22%  Similarity=0.349  Sum_probs=60.6

Q ss_pred             hHHHHHhhcccCCcccccccccCCcccCCCCCCceeeeEEecCCCCcEEEEEcCcC-CcCC-----CCCCC---------
Q 037422            2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDA-IRVN-----SNDVS---------   66 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~w~gi~C~~~~~~v~~l~l~~~-~~~~-----~~l~~---------   66 (100)
                      ||++||+.+.++   .    .+.+|.  .+.+||.|.||.|+  .++|+.|++++. +.|.     +.+..         
T Consensus        16 all~~k~~~~~~---~----~l~~W~--~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A           16 QLISFKDVLPDK---N----LLPDWS--SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             HHHHHHTTCSCT---T----SSTTCC--TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             HHHHHHhhCCCc---c----cccCCC--CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            789999999866   1    488995  56789999999998  589999999986 4431     00100         


Q ss_pred             --CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           67 --DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        67 --~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                        .+...++.. +..+++|++|||++|.|+|.||.
T Consensus        85 ~~~~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~  118 (768)
T 3rgz_A           85 SNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT  118 (768)
T ss_dssp             TTSCEEECCCC-CCCCTTCCEEECCSSEEEEEGGG
T ss_pred             cCCCcCCCchh-hccCCCCCEEECCCCcCCCcCCC
Confidence              122112233 47888888888888888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.31  E-value=1.7e-12  Score=88.43  Aligned_cols=47  Identities=38%  Similarity=0.709  Sum_probs=38.2

Q ss_pred             hHHHHHhhcccCCcccccccccCCcccCCCCCCce--eeeEEecCCC--CcEEEEEcCcC
Q 037422            2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCS--WERIKCNATT--GWVMELSLSDA   57 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~--w~gi~C~~~~--~~v~~l~l~~~   57 (100)
                      ||++||+.+.++   .    .+.+|.  ...+||.  |.||.|+...  ++|+.|++.++
T Consensus        10 aL~~~k~~~~~~---~----~l~~W~--~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~   60 (313)
T 1ogq_A           10 ALLQIKKDLGNP---T----TLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL   60 (313)
T ss_dssp             HHHHHHHHTTCC---G----GGTTCC--TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC
T ss_pred             HHHHHHHhcCCc---c----cccCCC--CCCCCCcCCCcceEeCCCCCCceEEEEECCCC
Confidence            789999999765   1    478995  4678998  9999997543  79999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=7.7e-11  Score=90.31  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             hHHHHHhhcccCCcccccccccCCcccCC---CCCC--cee------------eeEEecCCCCcEEEEEcCcCCcCCCCC
Q 037422            2 GLLEIKAFIKSVSDMQYADAILVSWVDNR---TSDC--CSW------------ERIKCNATTGWVMELSLSDAIRVNSND   64 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~---~~~~--C~w------------~gi~C~~~~~~v~~l~l~~~~~~~~~l   64 (100)
                      ||++||+.+.++           +|....   ..+|  |.|            .||.|+. .+||++|+|.++     .+
T Consensus       273 ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~-----~L  335 (876)
T 4ecn_A          273 ALKAIWEALDGK-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF-----GA  335 (876)
T ss_dssp             HHHHHHHHTTGG-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT-----CC
T ss_pred             HHHHHHHHcCCC-----------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC-----CC
Confidence            688999887432           674211   1355  999            9999985 589999999996     66


Q ss_pred             CCCCCcccCCCCCCCCCCCcEEeC-cCCccccccC
Q 037422           65 VSDGFPIINMSLFVPFQELHVLDL-WNNRFEGWEE   98 (100)
Q Consensus        65 ~~~g~~~i~~~~~~~l~~L~~L~L-s~N~~sG~iP   98 (100)
                        .|.  +|+++ +.|++|++||| +.|.++|.+|
T Consensus       336 --~G~--ip~~l-~~L~~L~~LdLss~N~lsG~~~  365 (876)
T 4ecn_A          336 --KGR--VPDAI-GQLTELKVLSFGTHSETVSGRL  365 (876)
T ss_dssp             --EEE--ECGGG-GGCTTCCEEESCCTTHHHHTTC
T ss_pred             --CCc--CchHH-hccccceEeeeccccccccccc
Confidence              677  87775 99999999999 9999999865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.98  E-value=5.1e-10  Score=82.69  Aligned_cols=79  Identities=22%  Similarity=0.246  Sum_probs=57.6

Q ss_pred             hHHHHHhhcccCCcc--cccccccCCcccCCCCCCcee---eeEEecCCCCcEEEEEcCcCCcCCCCCCCCCCcccCCCC
Q 037422            2 GLLEIKAFIKSVSDM--QYADAILVSWVDNRTSDCCSW---ERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSL   76 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~--~~~~~~l~~W~~~~~~~~C~w---~gi~C~~~~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~   76 (100)
                      ||.+++..+..+.-.  +.......+|.  ...++|.|   .||.|+. .++|++|+|.+.     .+  .|.  +|+++
T Consensus        34 aL~~~~~~~~~~~w~~~~~~~~~~~~W~--~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~-----~l--~g~--lp~~l  101 (636)
T 4eco_A           34 ALKEIWDALNGKNWSQQGFGTQPGANWN--FNKELDMWGAQPGVSLNS-NGRVTGLSLEGF-----GA--SGR--VPDAI  101 (636)
T ss_dssp             HHHHHHHHTTGGGCCCCC------CCCC--CSSCGGGTTCCTTEEECT-TCCEEEEECTTS-----CC--EEE--ECGGG
T ss_pred             HHHHHHHHcCCCCcccCCcCCccCCCCC--CCCCcccccCCCCeEEcC-CCCEEEEEecCc-----cc--CCc--CChHH
Confidence            677888777544100  00000123795  56889999   9999985 489999999996     66  677  87775


Q ss_pred             CCCCCCCcEEeCcCCcc
Q 037422           77 FVPFQELHVLDLWNNRF   93 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~   93 (100)
                       +.|++|++|||++|.+
T Consensus       102 -~~L~~L~~L~Ls~N~~  117 (636)
T 4eco_A          102 -GQLTELEVLALGSHGE  117 (636)
T ss_dssp             -GGCTTCCEEESCCGGG
T ss_pred             -hcCccceEEECcCCcc
Confidence             9999999999999977

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.23  E-value=1.2e-07  Score=64.88  Aligned_cols=51  Identities=12%  Similarity=0.050  Sum_probs=34.2

Q ss_pred             hHHHHHhhcccCCcccccccccCCccc--CCCCCCceeeeEEecC--------CCCcEEEEEcCcC
Q 037422            2 GLLEIKAFIKSVSDMQYADAILVSWVD--NRTSDCCSWERIKCNA--------TTGWVMELSLSDA   57 (100)
Q Consensus         2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~--~~~~~~C~w~gi~C~~--------~~~~v~~l~l~~~   57 (100)
                      +|++||..+...  ..   +....|..  ....++|.|.|+.|..        ...+|+.|++.++
T Consensus        31 aLl~~k~~~~~~--~~---~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n   91 (328)
T 4fcg_A           31 VLSQWQRHYNAD--RN---RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV   91 (328)
T ss_dssp             HHHHHHHHHHHC--CT---THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             HHHHHHHhccCC--ch---hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC
Confidence            688999877432  11   13567831  1356789999999942        2368899999886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.48  E-value=0.00024  Score=45.95  Aligned_cols=66  Identities=23%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             CCCCCceeeeEEecCC---------CCcEEEEEcCcC-CcCC--CCC---CC----------CCCcccCCCCCCCCCCCc
Q 037422           30 RTSDCCSWERIKCNAT---------TGWVMELSLSDA-IRVN--SND---VS----------DGFPIINMSLFVPFQELH   84 (100)
Q Consensus        30 ~~~~~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~--~~l---~~----------~g~~~i~~~~~~~l~~L~   84 (100)
                      .....|.|.+|.|...         ...++.|+++++ +.+.  ..+   ..          -..  +++..|..+++|+
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~   91 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLT   91 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcC
Confidence            3678899999999642         134677888876 3331  001   00          112  4445557888888


Q ss_pred             EEeCcCCcccccc
Q 037422           85 VLDLWNNRFEGWE   97 (100)
Q Consensus        85 ~L~Ls~N~~sG~i   97 (100)
                      +|+|++|.|++-.
T Consensus        92 ~L~Ls~N~l~~l~  104 (229)
T 3e6j_A           92 VLDLGTNQLTVLP  104 (229)
T ss_dssp             EEECCSSCCCCCC
T ss_pred             EEECCCCcCCccC
Confidence            8888888887543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.38  E-value=8.1e-05  Score=55.98  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=10.6

Q ss_pred             CCCCCCcEEeCcCCccccccC
Q 037422           78 VPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +.++.|++|||++|+++|.||
T Consensus       677 ~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             GGCTTCCEEECCSSCCEECCC
T ss_pred             hCCCCCCEEECCCCcccCcCC
Confidence            445555555555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.37  E-value=0.00018  Score=48.92  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=16.8

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      +++..|..|++|+.|||++|+|++-
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~~~   95 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALESL   95 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred             eCHHHhcCCcCCCEEeCCCCcccee
Confidence            3444457777777777777777753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.26  E-value=0.00052  Score=42.43  Aligned_cols=65  Identities=18%  Similarity=0.337  Sum_probs=36.4

Q ss_pred             CceeeeEEecCC---------CCcEEEEEcCcC-CcCC-----CCCCC------C--CCcccCCCCCCCCCCCcEEeCcC
Q 037422           34 CCSWERIKCNAT---------TGWVMELSLSDA-IRVN-----SNDVS------D--GFPIINMSLFVPFQELHVLDLWN   90 (100)
Q Consensus        34 ~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~-----~~l~~------~--g~~~i~~~~~~~l~~L~~L~Ls~   90 (100)
                      .|.|.++.|...         ...++.|++.++ +.+.     ..+..      .  ....+++..+..+++|++|+|++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            478888888631         125677777775 3321     00000      0  00014444457788888888888


Q ss_pred             CccccccC
Q 037422           91 NRFEGWEE   98 (100)
Q Consensus        91 N~~sG~iP   98 (100)
                      |.+++..|
T Consensus        86 N~l~~~~~   93 (177)
T 2o6r_A           86 NKLQSLPN   93 (177)
T ss_dssp             SCCCCCCT
T ss_pred             CCccccCH
Confidence            88876443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.23  E-value=0.00056  Score=43.26  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             CCceeeeEEecCC---------CCcEEEEEcCcC-CcCC-----CCCCC------CC--CcccCCCCCCCCCCCcEEeCc
Q 037422           33 DCCSWERIKCNAT---------TGWVMELSLSDA-IRVN-----SNDVS------DG--FPIINMSLFVPFQELHVLDLW   89 (100)
Q Consensus        33 ~~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~-----~~l~~------~g--~~~i~~~~~~~l~~L~~L~Ls   89 (100)
                      ..|.|.+|.|...         ..+++.|++.++ +.+.     ..+..      .+  ...+++..|..+++|++|+|+
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            3478999999642         125778888876 3321     00100      00  001444445777888888888


Q ss_pred             CCccccc
Q 037422           90 NNRFEGW   96 (100)
Q Consensus        90 ~N~~sG~   96 (100)
                      +|.+++.
T Consensus        85 ~n~l~~~   91 (208)
T 2o6s_A           85 TNQLQSL   91 (208)
T ss_dssp             SSCCCCC
T ss_pred             CCcCCcc
Confidence            8887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.10  E-value=0.00071  Score=42.59  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..|..+++|++|+|++|.+++..|
T Consensus        71 ~~~~~~l~~L~~L~Ls~N~l~~~~~   95 (192)
T 1w8a_A           71 PNAFEGASHIQELQLGENKIKEISN   95 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCEECS
T ss_pred             HhHcCCcccCCEEECCCCcCCccCH
Confidence            3334777777777777777776554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=96.96  E-value=0.00067  Score=44.68  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=12.6

Q ss_pred             CCCCCCCCCCcEEeCcCCcccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..|..+++|++|+|++|.+++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~   99 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQA   99 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCC
T ss_pred             hhhhcCCCCCCEEECCCCcCCc
Confidence            3334556666666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.92  E-value=0.00085  Score=48.01  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=16.8

Q ss_pred             CCCCCCCCCCCcEEeCcCCccccccC
Q 037422           73 NMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        73 ~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      ++..|..+++|++|||++|.+++..|
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             ChhhccccccCCEEECCCCccCccCH
Confidence            33334677777777777777766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.89  E-value=0.00078  Score=46.08  Aligned_cols=55  Identities=20%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             ceeeeEEecCC---------CCcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           35 CSWERIKCNAT---------TGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        35 C~w~gi~C~~~---------~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      |.+..|.|...         ...++.|+|+++     .+  . .  ||+..|..|++|++|+|++|.+.+.||.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N-----~i--~-~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~   72 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT-----KL--R-V--IQKGAFSGFGDLEKIEISQNDVLEVIEA   72 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESC-----CC--S-E--ECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCC-----cC--C-C--cCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence            77888999631         124667777775     44  2 2  6666569999999999999999888875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.88  E-value=0.002  Score=39.82  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=18.3

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..|..+++|++|+|++|+|++-.|
T Consensus        69 l~~~~f~~l~~L~~L~L~~N~l~~~~~   95 (170)
T 3g39_A           69 LPAGVFDKLTQLTQLSLNDNQLKSIPR   95 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cChhhccCCCCCCEEECCCCccCEeCH
Confidence            445545777888888888887776433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.80  E-value=0.00052  Score=46.32  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +|.. +..+++|++|+|++|.|+|.||.
T Consensus       260 ~p~~-l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          260 LPQG-LTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCGG-GGGCTTCCEEECCSSEEEEECCC
T ss_pred             CChH-HhcCcCCCEEECcCCcccccCCC
Confidence            5444 48899999999999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.75  E-value=0.0019  Score=45.14  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..+++|++|+|++|.+++.+|.
T Consensus        70 i~~~~~~~l~~L~~L~Ls~n~l~~~~~~   97 (455)
T 3v47_A           70 IRNNTFRGLSSLIILKLDYNQFLQLETG   97 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred             ECcccccccccCCEEeCCCCccCccChh
Confidence            5455457888888888888888776663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.69  E-value=0.0028  Score=40.66  Aligned_cols=61  Identities=21%  Similarity=0.359  Sum_probs=33.2

Q ss_pred             CceeeeEEecCC---------CCcEEEEEcCcC-CcCC-----CCCCC------CC--CcccCCCCCCCCCCCcEEeCcC
Q 037422           34 CCSWERIKCNAT---------TGWVMELSLSDA-IRVN-----SNDVS------DG--FPIINMSLFVPFQELHVLDLWN   90 (100)
Q Consensus        34 ~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~-----~~l~~------~g--~~~i~~~~~~~l~~L~~L~Ls~   90 (100)
                      .|.|..+.|...         ...++.|++.++ +...     ..+.+      .+  ...+.+..|..+++|++|+|++
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            477888888631         125677888776 3220     00000      00  0013333357777777777777


Q ss_pred             Cccc
Q 037422           91 NRFE   94 (100)
Q Consensus        91 N~~s   94 (100)
                      |.++
T Consensus        90 N~l~   93 (220)
T 2v9t_B           90 NKIT   93 (220)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            7776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.60  E-value=0.0023  Score=40.21  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..|..+++|++|+|++|++++.+|
T Consensus        95 ~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           95 NKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             HHHhcCCCCCCEEECCCCcCCeeCH
Confidence            3334666666666666666666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.57  E-value=0.0034  Score=41.74  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             CCceeeeEEecCC---------CCcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422           33 DCCSWERIKCNAT---------TGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        33 ~~C~w~gi~C~~~---------~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s   94 (100)
                      ..|.|.++.|...         ...++.|+++++     .+  . .  +++..|..+++|++|+|++|.++
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n-----~l--~-~--i~~~~~~~l~~L~~L~L~~n~l~   65 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESN-----KL--Q-S--LPHGVFDKLTQLTKLSLSSNGLS   65 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSS-----CC--C-C--CCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC-----cc--C-c--cCHhHhhccccCCEEECCCCccC
Confidence            3478999999642         125778888775     34  2 2  55554577788888888888766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.42  E-value=0.0041  Score=38.59  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=16.9

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      +|+..|..+++|++|+|++|+|++-
T Consensus        72 i~~~~~~~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           72 IPTGVFDKLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cChhHhCCcchhhEEECCCCcccee
Confidence            4444456777777777777777753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.40  E-value=0.004  Score=42.35  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=17.0

Q ss_pred             CCCCceeeeEEecCC-----------CCcEEEEEcCcC
Q 037422           31 TSDCCSWERIKCNAT-----------TGWVMELSLSDA   57 (100)
Q Consensus        31 ~~~~C~w~gi~C~~~-----------~~~v~~l~l~~~   57 (100)
                      ....|.|.++ |+..           ...++.|+++++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n   62 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN   62 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC
Confidence            4567899987 6521           125778888876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.39  E-value=0.0023  Score=43.51  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=21.5

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +|.. +..+++|++|+|++|.+.|.||.
T Consensus       269 ~p~~-~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          269 LPLD-IHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CCTT-GGGCTTCCEEECTTCTTCCCCCG
T ss_pred             cchh-hhcCCCCCEEeCCCCCchhhccH
Confidence            5444 47888889999999888888885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.37  E-value=0.0044  Score=38.23  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=11.4

Q ss_pred             CCCCCCCcEEeCcCCccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      |..+++|++|+|++|.|++.
T Consensus        98 ~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTCTTCCEEECCSSCBCTT
T ss_pred             hcCCCCCCEEEeCCCCCCCC
Confidence            35556666666666655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.30  E-value=0.0057  Score=37.96  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=11.9

Q ss_pred             CCCCCCCCCCcEEeCcCCcccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..|..+++|++|+|++|.|..
T Consensus        98 ~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTTTTCTTCSEEECCSSCBCT
T ss_pred             HHHhccccCCCEEEeCCCCccc
Confidence            3333555666666666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.25  E-value=0.003  Score=42.79  Aligned_cols=55  Identities=11%  Similarity=0.157  Sum_probs=39.3

Q ss_pred             ceeeeEEecCC-----------CCcEEEEEcCc-CCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           35 CSWERIKCNAT-----------TGWVMELSLSD-AIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        35 C~w~gi~C~~~-----------~~~v~~l~l~~-~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      |.|..|.|...           ..+++.|+|++ +     .+  .+   +++..|..|++|+.|+|++|+|+|.+|.
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-----~l--~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQ-----HL--QH---LELRDLRGLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCS-----SC--CE---ECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCC-----CC--CC---cChhHhccccCCCEEECCCCccceeCHH
Confidence            78888888642           02367777774 4     44  22   5555568999999999999999997763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.25  E-value=0.0053  Score=39.88  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCcEEeCcCCccccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      +..|..+++|++|+|++|.+++.
T Consensus        76 ~~~~~~l~~L~~L~L~~n~l~~~   98 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANNQLASL   98 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCC
T ss_pred             HhHhccCCcCCEEECCCCccccc
Confidence            33346666677777777766643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.80  E-value=0.013  Score=37.44  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=14.2

Q ss_pred             CCCCCCCcEEeCcCCccccccC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      |..+++|++|+|++|.+++.+|
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCBCT
T ss_pred             cCCCccCCEEECCCCcCCEECH
Confidence            4666666777777666666544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.79  E-value=0.014  Score=36.68  Aligned_cols=17  Identities=24%  Similarity=0.362  Sum_probs=8.7

Q ss_pred             CCCCCCcEEeCcCCccc
Q 037422           78 VPFQELHVLDLWNNRFE   94 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~s   94 (100)
                      ..+++|++|+|++|.++
T Consensus        99 ~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           99 DGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCEEECCCCCCC
Confidence            44555555555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.77  E-value=0.01  Score=38.05  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..+++|++|+|++|.+++.+|.
T Consensus        96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           96 VQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             CCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             cCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence            3444457888889999999888876653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.72  E-value=0.0078  Score=43.10  Aligned_cols=20  Identities=20%  Similarity=0.072  Sum_probs=10.2

Q ss_pred             CCCCCCcEEeCcCCcccccc
Q 037422           78 VPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      ..+++|++|+|++|.|++.+
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          141 GCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             GGGSSEEEEECTTSCCCEEE
T ss_pred             cCCCCCCEEECCCCCCCCcC
Confidence            44555555555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=95.71  E-value=0.024  Score=38.04  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=16.2

Q ss_pred             CceeeeEEecCC---------CCcEEEEEcCcC
Q 037422           34 CCSWERIKCNAT---------TGWVMELSLSDA   57 (100)
Q Consensus        34 ~C~w~gi~C~~~---------~~~v~~l~l~~~   57 (100)
                      .|.|..+.|...         ...++.++++++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n   62 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN   62 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCC
Confidence            468999999631         124677888776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.67  E-value=0.016  Score=37.26  Aligned_cols=17  Identities=18%  Similarity=0.153  Sum_probs=8.3

Q ss_pred             CCCCCCcEEeCcCCccc
Q 037422           78 VPFQELHVLDLWNNRFE   94 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~s   94 (100)
                      ..+++|++|+|++|.|+
T Consensus       109 ~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             CcchhhCeEeccCCccc
Confidence            44444555555544444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.67  E-value=0.0095  Score=42.87  Aligned_cols=28  Identities=18%  Similarity=0.187  Sum_probs=21.2

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..+++|++|||++|++++.+|.
T Consensus       533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             CCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             CChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            4444457888888888888888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.61  E-value=0.016  Score=35.54  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      +++..+..+++|++|+|++|.|++-
T Consensus        91 ~~~~~~~~l~~L~~L~l~~N~l~~~  115 (177)
T 2o6r_A           91 LPNGVFDKLTQLKELALDTNQLKSV  115 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCHHHhhCCcccCEEECcCCcceEe
Confidence            4555568999999999999999853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.55  E-value=0.019  Score=36.68  Aligned_cols=20  Identities=25%  Similarity=0.634  Sum_probs=11.6

Q ss_pred             CCCCCCCcEEeCcCCccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      |..+++|++|+|++|.|++.
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCC
T ss_pred             cCCCCCCCEEECCCCcCCEE
Confidence            35556666666666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.50  E-value=0.0067  Score=44.76  Aligned_cols=42  Identities=10%  Similarity=0.177  Sum_probs=31.5

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCc-ccc-ccCC
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNR-FEG-WEEN   99 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~-~sG-~iP~   99 (100)
                      .++.+++.++     .+  .|.  +|.. |..+++|++|+|++|. |+| .||.
T Consensus       250 ~L~~L~L~~n-----~l--~~~--~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          250 DLTDVEVYNC-----PN--LTK--LPTF-LKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             TCCEEEEECC-----TT--CSS--CCTT-TTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             CCCEEEecCC-----cC--Ccc--ChHH-HhcCCCCCEEECcCCCCCccccchH
Confidence            4666777664     45  555  7655 4899999999999998 999 7774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=95.40  E-value=0.02  Score=38.51  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=16.0

Q ss_pred             ceeeeEEecCC---------CCcEEEEEcCcC
Q 037422           35 CSWERIKCNAT---------TGWVMELSLSDA   57 (100)
Q Consensus        35 C~w~gi~C~~~---------~~~v~~l~l~~~   57 (100)
                      |.|..+.|...         ...++.|++.++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n   64 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN   64 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCC
Confidence            78999999631         125677888775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.32  E-value=0.0024  Score=47.04  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             cCCcccCCCCCCc-----eeeeE-EecCCCCcEEEEEcCcC-CcCCC-CCCC-------CCC--cccCCCCCCCCCCCcE
Q 037422           23 LVSWVDNRTSDCC-----SWERI-KCNATTGWVMELSLSDA-IRVNS-NDVS-------DGF--PIINMSLFVPFQELHV   85 (100)
Q Consensus        23 l~~W~~~~~~~~C-----~w~gi-~C~~~~~~v~~l~l~~~-~~~~~-~l~~-------~g~--~~i~~~~~~~l~~L~~   85 (100)
                      +..|.  ....+|     .|.++ .|..  .+++.|++.++ +.+.+ .+..       .+.  ..||    ..+++|++
T Consensus        33 l~~W~--~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~  104 (571)
T 3cvr_A           33 WDKWE--KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEY  104 (571)
T ss_dssp             HHHHH--TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred             HHHHh--ccCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCE
Confidence            45675  355677     69999 6753  57888999886 33311 0100       000  0032    23567777


Q ss_pred             EeCcCCccccccC
Q 037422           86 LDLWNNRFEGWEE   98 (100)
Q Consensus        86 L~Ls~N~~sG~iP   98 (100)
                      |+|++|.|++ ||
T Consensus       105 L~Ls~N~l~~-ip  116 (571)
T 3cvr_A          105 LDACDNRLST-LP  116 (571)
T ss_dssp             EECCSSCCSC-CC
T ss_pred             EEccCCCCCC-cc
Confidence            7777777776 65

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=95.24  E-value=0.025  Score=37.87  Aligned_cols=22  Identities=14%  Similarity=-0.061  Sum_probs=15.4

Q ss_pred             CCCCCCCcEEeCcCCccccccCC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +..+++|++|+|++|.++ .||.
T Consensus       249 ~~~l~~L~~L~Ls~N~l~-~ip~  270 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK-QVPK  270 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS-SCCS
T ss_pred             hhhcCCCCEEECCCCccC-hhhh
Confidence            355677777777777777 6664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=95.22  E-value=0.021  Score=39.80  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=12.6

Q ss_pred             CCCCCCCcEEeCcCCcccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      |..+++|++|+|++|.+++.+
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~  119 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAV  119 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHH
T ss_pred             ccCcccCCEEeCCCCCCCccc
Confidence            356666666666666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=95.14  E-value=0.026  Score=37.03  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=18.2

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..+..+++|++|+|++|.|.|.+|
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCHHHHhCCcCCCEEEccCCCccccCc
Confidence            334445777788888887777766655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=95.12  E-value=0.031  Score=35.04  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=17.3

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..+..+++|+.|+|++|.+.+..|
T Consensus       139 ~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          139 VPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             eCHHHhccCCCccEEEecCCCeecCCC
Confidence            334444667777777777776666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.07  E-value=0.02  Score=41.19  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=15.7

Q ss_pred             cCCCCCCCCCCCcEEeCcCCcccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      |++..|..|++|++|+|++|++++
T Consensus        91 i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           91 IEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             cChhHhcCCCCCCEEEccCCcCCC
Confidence            444445677777777777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=94.99  E-value=0.036  Score=35.89  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=11.6

Q ss_pred             CCCCCCCcEEeCcCCccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      |..+++|++|+|++|.+++.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCC
T ss_pred             cCcCcCCCEEECCCCcCCcc
Confidence            35556666666666665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.85  E-value=0.038  Score=34.65  Aligned_cols=18  Identities=28%  Similarity=0.222  Sum_probs=8.8

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|+.|+|++|.+++
T Consensus        75 ~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             TTCTTCCEEECCSSCCCB
T ss_pred             cCCCCCCEEECCCCccCE
Confidence            444455555555554444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=94.82  E-value=0.057  Score=35.23  Aligned_cols=27  Identities=15%  Similarity=0.163  Sum_probs=22.8

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..+..+++|+.|+|++|.|++..|
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            556656889999999999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=94.68  E-value=0.019  Score=38.43  Aligned_cols=19  Identities=21%  Similarity=0.295  Sum_probs=13.5

Q ss_pred             CCCCCCcEEeCcCCccccc
Q 037422           78 VPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~   96 (100)
                      ..+++|++|+|++|.+++.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~  136 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR  136 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS
T ss_pred             hcCCCccEEEccCCCCcch
Confidence            6677777777777777664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=94.61  E-value=0.047  Score=35.78  Aligned_cols=27  Identities=19%  Similarity=0.396  Sum_probs=19.3

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..+..+++|++|+|++|.+++..|
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCH
Confidence            344445778888888888888887554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.61  E-value=0.016  Score=43.67  Aligned_cols=27  Identities=19%  Similarity=0.132  Sum_probs=21.5

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      ||.. |..|++|++|+|++|.|+|.+|.
T Consensus       308 lp~~-~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          308 LPWE-FGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred             cChh-hhcCCCccEEeCCCCccCCCChH
Confidence            6555 58888999999999998887763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=94.56  E-value=0.039  Score=39.78  Aligned_cols=27  Identities=19%  Similarity=0.012  Sum_probs=17.1

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +|...+..+++|+.|+|++|.++|.+|
T Consensus       419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          419 AYDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             cChhhhcCcccCCEEECCCCCCCcchh
Confidence            444444666777777777777766655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=94.47  E-value=0.03  Score=37.95  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=30.4

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++.++++++     .+  . .  +|...|..+++|++|+|++|.|++..|
T Consensus       278 ~L~~L~Ls~N-----~l--~-~--i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          278 GLLELEFSRN-----QL--K-S--VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCCEEECCSS-----CC--C-C--CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCEEECCCC-----CC--C-c--cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            4566666664     44  2 3  666656899999999999999998765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=94.40  E-value=0.073  Score=38.47  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=20.6

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..+++|++|+|++|.+++.+|.
T Consensus        71 i~~~~~~~l~~L~~L~Ls~n~l~~~~p~   98 (606)
T 3vq2_A           71 IEDKAWHGLHHLSNLILTGNPIQSFSPG   98 (606)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred             cCHHHhhchhhcCEeECCCCcccccChh
Confidence            4344457888888888888888876664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=94.40  E-value=0.036  Score=39.38  Aligned_cols=27  Identities=11%  Similarity=-0.160  Sum_probs=17.0

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +|...+..+++|+.|+|++|.+++.+|
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred             cccchhccCccCCEEECcCCCCCcchh
Confidence            443334666777777777777766655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=94.40  E-value=0.042  Score=32.58  Aligned_cols=17  Identities=24%  Similarity=0.337  Sum_probs=8.4

Q ss_pred             CCCCCcEEeCcCCcccc
Q 037422           79 PFQELHVLDLWNNRFEG   95 (100)
Q Consensus        79 ~l~~L~~L~Ls~N~~sG   95 (100)
                      .+++|++|+|++|.+++
T Consensus        86 ~l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             HCTTCCEEECTTSCCCS
T ss_pred             hCCCCCEEECCCCcCCC
Confidence            34455555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.36  E-value=0.024  Score=40.53  Aligned_cols=18  Identities=33%  Similarity=0.392  Sum_probs=9.3

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|++|+|++|.|++
T Consensus        77 ~~l~~L~~L~Ls~N~l~~   94 (487)
T 3oja_A           77 ESLSTLRTLDLNNNYVQE   94 (487)
T ss_dssp             TTCTTCCEEECCSSEEEE
T ss_pred             ccCCCCCEEEecCCcCCC
Confidence            455555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=94.34  E-value=0.038  Score=32.75  Aligned_cols=40  Identities=25%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      .+++.++++++     .+  .+   + .. +..+++|++|+|++|.+++.+|
T Consensus        42 ~~L~~L~l~~n-----~l--~~---~-~~-~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           42 EELEFLSTINV-----GL--TS---I-AN-LPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             TTCCEEECTTS-----CC--CC---C-TT-CCCCTTCCEEECCSSCCCSCTH
T ss_pred             CCCcEEECcCC-----CC--CC---c-hh-hhcCCCCCEEECCCCcccchHH
Confidence            46788888875     44  22   3 33 4889999999999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=94.31  E-value=0.015  Score=44.99  Aligned_cols=42  Identities=14%  Similarity=0.123  Sum_probs=29.8

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCc-ccc-ccCC
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNR-FEG-WEEN   99 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~-~sG-~iP~   99 (100)
                      +++.|++.++     .+  .|.  +|.. |..|++|+.|+|++|. |+| .||.
T Consensus       492 ~L~~L~Ls~N-----~l--~~~--iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          492 DLTDVELYNC-----PN--MTQ--LPDF-LYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             TCCEEEEESC-----TT--CCS--CCGG-GGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             CCCEEECcCC-----CC--Ccc--ChHH-HhCCCCCCEEECcCCCCcccccchH
Confidence            4566666664     44  555  6555 4888899999999997 888 7763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=94.29  E-value=0.043  Score=36.33  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=15.3

Q ss_pred             CCCCCCCcEEeCcCCccccccC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..+++|++|+|++|.+++.+|
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccCcccCCEeECCCCCCcccCH
Confidence            4667777777777777777655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.28  E-value=0.028  Score=41.22  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=17.7

Q ss_pred             CCCCCCCcEEeCcCCcccccc-CC
Q 037422           77 FVPFQELHVLDLWNNRFEGWE-EN   99 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~i-P~   99 (100)
                      +..|++|+.|+|++|.|++.+ |.
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTG
T ss_pred             cCCCCCCcEEECCCCCCCCCCCcH
Confidence            478888888888888888775 53

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=94.19  E-value=0.065  Score=35.65  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=17.2

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..|..+++|+.|+|++|.|+ .||
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip  188 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIP  188 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence            44444566777777777777776 454

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=94.17  E-value=0.021  Score=43.44  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=22.7

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..|++|++|+|++|.+++.+|.
T Consensus        64 i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           64 IDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             ECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             cCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            5555568999999999999999887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=94.12  E-value=0.031  Score=34.91  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=13.6

Q ss_pred             CCCCCCCcEEeCcCCcccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      +..+++|++|+|++|.+++.+
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~  128 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSI  128 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGG
T ss_pred             hcCCCCCCEEEecCCccCcHh
Confidence            366667777777777666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.00  E-value=0.043  Score=40.22  Aligned_cols=25  Identities=24%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCCcEEeCcCCccccccC
Q 037422           73 NMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        73 ~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      |.. |..|++|+.|+|++|.|++.+|
T Consensus       526 p~~-l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          526 IQP-LVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             TGG-GGGCTTCCEEECTTSGGGGSSS
T ss_pred             cHH-HhcCCCCCEEEecCCcCCCCcc
Confidence            444 5899999999999999999866

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=93.98  E-value=0.066  Score=38.23  Aligned_cols=28  Identities=14%  Similarity=0.160  Sum_probs=21.7

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..+..+++|+.|++++|.|+|.+|.
T Consensus       509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            3445457888899999999998888774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=93.89  E-value=0.077  Score=36.05  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      ||+..|..+++|++|||++|+|+. ||
T Consensus       193 i~~~~f~~l~~L~~LdLs~N~l~~-lp  218 (350)
T 4ay9_X          193 LPNDVFHGASGPVILDISRTRIHS-LP  218 (350)
T ss_dssp             CCTTTTTTEECCSEEECTTSCCCC-CC
T ss_pred             CCHHHhccCcccchhhcCCCCcCc-cC
Confidence            666667899999999999999874 44

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=93.85  E-value=0.046  Score=36.46  Aligned_cols=14  Identities=29%  Similarity=0.299  Sum_probs=7.1

Q ss_pred             CCCcEEeCcCCccc
Q 037422           81 QELHVLDLWNNRFE   94 (100)
Q Consensus        81 ~~L~~L~Ls~N~~s   94 (100)
                      ++|++|+|++|+|+
T Consensus       251 ~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          251 SALNSLNLSFAGLE  264 (310)
T ss_dssp             TTCCCEECCSSCCC
T ss_pred             CcCCEEECCCCCCC
Confidence            35555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=93.82  E-value=0.018  Score=35.41  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=8.1

Q ss_pred             CCCCCCcEEeCcCCccc
Q 037422           78 VPFQELHVLDLWNNRFE   94 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~s   94 (100)
                      ..+++|+.|+|++|.++
T Consensus       110 ~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A          110 ASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             GGCTTCCEEECCSSGGG
T ss_pred             hcCCCCCEEEecCCCCC
Confidence            44444555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=93.81  E-value=0.079  Score=37.18  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=14.7

Q ss_pred             CCCCCCCCCCcEEeCcCCcccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..|..+++|++|+|++|.+++
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A          116 VGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSB
T ss_pred             hhhccCcccCCEEECCCCcCCc
Confidence            3344677777777777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=93.81  E-value=0.045  Score=41.22  Aligned_cols=21  Identities=10%  Similarity=-0.035  Sum_probs=12.1

Q ss_pred             CCCCCCcEEeCcCCccccccCC
Q 037422           78 VPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      ..|++|++|+|++|.|+ .||.
T Consensus       290 ~~l~~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             GGGTTCSEEECCSSCCC-CCCS
T ss_pred             cCCCCCCEEECCCCCCC-ccCh
Confidence            55666666666666554 4553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.76  E-value=0.025  Score=37.93  Aligned_cols=10  Identities=30%  Similarity=0.451  Sum_probs=7.5

Q ss_pred             cEEEEEcCcC
Q 037422           48 WVMELSLSDA   57 (100)
Q Consensus        48 ~v~~l~l~~~   57 (100)
                      .+..|+|+++
T Consensus       171 ~L~~L~Ls~N  180 (267)
T 3rw6_A          171 ELLSLNLSNN  180 (267)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEECCCC
Confidence            5777888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=93.75  E-value=0.019  Score=40.78  Aligned_cols=19  Identities=21%  Similarity=0.110  Sum_probs=0.0

Q ss_pred             CCCcEEeCcCCcccc--ccCC
Q 037422           81 QELHVLDLWNNRFEG--WEEN   99 (100)
Q Consensus        81 ~~L~~L~Ls~N~~sG--~iP~   99 (100)
                      ++|+.|||++|.++|  .||.
T Consensus       396 ~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          396 QNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             ---------------------
T ss_pred             CcCCEEECCCCcCCccccchh
Confidence            556666666666655  5553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=93.70  E-value=0.092  Score=35.14  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=26.0

Q ss_pred             CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      ..++.|++.++     .+  .+   +.+..|..+++|++|+|++|.++ .+|
T Consensus        76 ~~L~~L~L~~n-----~l--~~---~~~~~~~~l~~L~~L~Ls~n~l~-~l~  116 (330)
T 1xku_A           76 KNLHTLILINN-----KI--SK---ISPGAFAPLVKLERLYLSKNQLK-ELP  116 (330)
T ss_dssp             TTCCEEECCSS-----CC--CC---BCTTTTTTCTTCCEEECCSSCCS-BCC
T ss_pred             CCCCEEECCCC-----cC--Ce---eCHHHhcCCCCCCEEECCCCcCC-ccC
Confidence            35677777765     34  22   32333477888888888888776 454

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.65  E-value=0.09  Score=38.33  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=17.1

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +|+..|..+++|++|+|++|.+++.+|
T Consensus       138 l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          138 LPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            444444667777777777777766554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=93.64  E-value=0.077  Score=34.77  Aligned_cols=20  Identities=25%  Similarity=0.187  Sum_probs=9.7

Q ss_pred             CCCCCCcEEeCcCCcccccc
Q 037422           78 VPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      ..+++|+.|+|++|.+++.+
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~  193 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVH  193 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEEC
T ss_pred             cCccccCEEECCCCcccccC
Confidence            44455555555555544443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=93.55  E-value=0.067  Score=40.66  Aligned_cols=28  Identities=14%  Similarity=0.089  Sum_probs=22.5

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +.+..|..+++|++|+|++|.+++.+|.
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  115 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLK  115 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred             cCHhHccCCcccCEeeCcCCCCCccccc
Confidence            3344568999999999999999987764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=93.49  E-value=0.073  Score=38.46  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=16.4

Q ss_pred             CCCCCCCCCCcEEeCcCCcccccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      |..|..+++|++|+|++|.+++..
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             hhhcCCcccCCEEEccCCcccccc
Confidence            333577778888888887776543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=93.39  E-value=0.038  Score=39.23  Aligned_cols=17  Identities=41%  Similarity=0.358  Sum_probs=8.3

Q ss_pred             CCCCCCcEEeCcCCccc
Q 037422           78 VPFQELHVLDLWNNRFE   94 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~s   94 (100)
                      ..+++|++|||++|.++
T Consensus        66 ~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B           66 KFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             hcccCCCEEecCCCcee
Confidence            44444555555544444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=93.38  E-value=0.0028  Score=45.12  Aligned_cols=27  Identities=4%  Similarity=-0.165  Sum_probs=12.1

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      ||.++ +.|++|++|++++|.++|.+|.
T Consensus        26 iP~~i-~~L~~L~~L~l~~n~~~~~~p~   52 (454)
T 1jl5_A           26 MPVEA-ENVKSKTEYYNAWSEWERNAPP   52 (454)
T ss_dssp             ---------CCHHHHHHHHHHHHHTSCT
T ss_pred             CChhH-hcccchhhhhccCCcccccCCc
Confidence            54443 6666666666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=93.33  E-value=0.083  Score=36.09  Aligned_cols=19  Identities=42%  Similarity=0.672  Sum_probs=10.6

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      |..+++|++|+|++|.|++
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCE
T ss_pred             ccCCCCCCEEECCCCcCCc
Confidence            3555555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=93.27  E-value=0.12  Score=34.34  Aligned_cols=18  Identities=33%  Similarity=0.479  Sum_probs=9.2

Q ss_pred             CCCCCCCcEEeCcCCccc
Q 037422           77 FVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~s   94 (100)
                      |..+++|+.|+|++|+++
T Consensus       144 ~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             TTTCTTCCEEECTTSCCS
T ss_pred             cccccCCCEEECCCCcCC
Confidence            344555555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=93.17  E-value=0.096  Score=35.77  Aligned_cols=18  Identities=22%  Similarity=0.226  Sum_probs=9.3

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|+.|+|++|.|++
T Consensus       133 ~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             TTCTTCCEEECCSSCCCS
T ss_pred             CCcccCCEEECCCCcCCe
Confidence            455555555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=93.16  E-value=0.041  Score=36.73  Aligned_cols=17  Identities=18%  Similarity=0.182  Sum_probs=8.6

Q ss_pred             CCCCcEEeCcCCccccc
Q 037422           80 FQELHVLDLWNNRFEGW   96 (100)
Q Consensus        80 l~~L~~L~Ls~N~~sG~   96 (100)
                      +++|++|+|++|.+++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~  160 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAF  160 (310)
T ss_dssp             CSCCCEEEEECCSSCCC
T ss_pred             ccCCCEEEeeCCCcchh
Confidence            44555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=93.13  E-value=0.13  Score=35.25  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=10.9

Q ss_pred             CCCCCCCcEEeCcCCccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      |..+++|++|+|++|.+++.
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~  156 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERI  156 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBC
T ss_pred             hcCCCCCcEEECCCCccCcc
Confidence            35555555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=93.11  E-value=0.15  Score=32.46  Aligned_cols=27  Identities=15%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             cCCCCCCCC-CCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPF-QELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l-~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..+ ++|+.|+|++|.+++ ||.
T Consensus       195 i~~~~~~~l~~~L~~L~l~~N~l~~-l~~  222 (239)
T 2xwt_C          195 IDKDAFGGVYSGPSLLDVSQTSVTA-LPS  222 (239)
T ss_dssp             ECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred             CCHHHhhccccCCcEEECCCCcccc-CCh
Confidence            556656888 999999999999984 553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=93.11  E-value=0.092  Score=34.40  Aligned_cols=17  Identities=35%  Similarity=0.411  Sum_probs=12.2

Q ss_pred             CCCCCCCCcEEeCcCCc
Q 037422           76 LFVPFQELHVLDLWNNR   92 (100)
Q Consensus        76 ~~~~l~~L~~L~Ls~N~   92 (100)
                      .|..+++|++|+|++|.
T Consensus        75 ~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             TTTTCTTCCEEECCSCT
T ss_pred             hcCCccCCCEEeCCCCC
Confidence            34677777777777776

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=93.00  E-value=0.044  Score=33.16  Aligned_cols=39  Identities=23%  Similarity=0.177  Sum_probs=27.5

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      .++.|++.++     .+  .+   + .. +..+++|++|+|++|.+++.+|
T Consensus        50 ~L~~L~l~~n-----~l--~~---~-~~-~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           50 NLEFLSLINV-----GL--IS---V-SN-LPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             GCCEEEEESS-----CC--CC---C-SS-CCCCSSCCEEEEESCCCCSCCC
T ss_pred             CCCEEeCcCC-----CC--CC---h-hh-hccCCCCCEEECcCCcCchHHH
Confidence            4566666664     34  22   3 33 4889999999999999998765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=92.98  E-value=0.11  Score=37.45  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=16.2

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccCC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +..|..+++|++|||++|.++ .||.
T Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~-~lp~  117 (562)
T 3a79_B           93 FHVFLFNQDLEYLDVSHNRLQ-NISC  117 (562)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC-EECS
T ss_pred             HHHhCCCCCCCEEECCCCcCC-ccCc
Confidence            333467777777777777776 4554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.93  E-value=0.13  Score=37.49  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=16.7

Q ss_pred             cCCCCCCCCCCCcEEeCcCCcccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +++..|+.+++|++|+|++|.+++
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~l~~  137 (597)
T 3oja_B          114 LPPHVFQNVPLLTVLVLERNDLSS  137 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCHHHHcCCCCCCEEEeeCCCCCC
Confidence            344445777888888888887774

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=92.89  E-value=0.14  Score=36.02  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=15.3

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++..|..+++|++|+|++|.+++.+|
T Consensus        95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           95 IPLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             cCcccccCCCCCCEEECCCCccccCCh
Confidence            334334566666666666666655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=92.79  E-value=0.11  Score=31.40  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=15.5

Q ss_pred             CCCCCCCcEEeCcCCcccccc
Q 037422           77 FVPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      +..+++|+.|+|++|.+++..
T Consensus       116 l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A          116 LKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             GSSCSCCCEEECCSSGGGTST
T ss_pred             HhcCCCCCEEEeeCCcCcchH
Confidence            467788888888888877643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.77  E-value=0.1  Score=31.00  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=27.4

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s   94 (100)
                      .++.|+|+++     .|  + .  |++..|..+++|+.|+|++|-|.
T Consensus        32 ~l~~L~Ls~N-----~l--~-~--l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGN-----NL--T-A--LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTS-----CC--S-S--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCC-----cC--C-c--cChhhhhhccccCEEEecCCCee
Confidence            4667777775     44  1 2  66666788999999999999763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=92.75  E-value=0.094  Score=37.88  Aligned_cols=25  Identities=24%  Similarity=0.101  Sum_probs=17.6

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..|..+++|++|+|++|.+++.+|
T Consensus        74 ~~~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           74 EDTFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCSEECT
T ss_pred             hhhccCccccCeeeCCCCcccccCh
Confidence            3335777788888888887776655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=92.74  E-value=0.19  Score=32.02  Aligned_cols=18  Identities=11%  Similarity=0.388  Sum_probs=9.9

Q ss_pred             CCCCCCCcEEeCcC-Cccc
Q 037422           77 FVPFQELHVLDLWN-NRFE   94 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~-N~~s   94 (100)
                      |..+++|++|+|++ |.++
T Consensus        76 f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             EESCTTCCEEEEEEETTCC
T ss_pred             cCCCcCCcEEECCCCCCee
Confidence            35555555555555 5554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=92.71  E-value=0.083  Score=35.44  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +++.|++.++     .+  .+   +.+..|..+++|++|+|++|.++ .||
T Consensus        79 ~L~~L~L~~n-----~l--~~---~~~~~~~~l~~L~~L~L~~n~l~-~l~  118 (332)
T 2ft3_A           79 HLYALVLVNN-----KI--SK---IHEKAFSPLRKLQKLYISKNHLV-EIP  118 (332)
T ss_dssp             TCCEEECCSS-----CC--CE---ECGGGSTTCTTCCEEECCSSCCC-SCC
T ss_pred             CCcEEECCCC-----cc--Cc---cCHhHhhCcCCCCEEECCCCcCC-ccC
Confidence            4566666654     23  21   22333466677777777777665 444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=92.71  E-value=0.11  Score=33.77  Aligned_cols=18  Identities=11%  Similarity=0.089  Sum_probs=8.4

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|++|++++|.+++
T Consensus        97 ~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           97 SGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             TTCTTCCEEECTTSCCCC
T ss_pred             cCCccccEEECCCCCccc
Confidence            444444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=92.68  E-value=0.091  Score=37.96  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..|..+++|+.|+|++|.+++.+|
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             hhhhccccCCCEEECCCCccCcCCh
Confidence            3345777788888888887777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=92.64  E-value=0.11  Score=36.53  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=13.4

Q ss_pred             CCCCCCCCcEEeCcCCcccc
Q 037422           76 LFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        76 ~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      .|..+++|++|+|++|.+++
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~   94 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKL   94 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCS
T ss_pred             hhhCCccCCEEECCCCcCCc
Confidence            34667777777777776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=92.47  E-value=0.071  Score=38.01  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..+..+++|+.|+|++|.|++.+|
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          490 DGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcCcccCEEEecCCCccCCCc
Confidence            3334666677777777777666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=92.37  E-value=0.035  Score=37.19  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=13.2

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..+++|++|+|++|.+++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEE
T ss_pred             hhhcCCCCEEECcCCcccc
Confidence            3667777777777777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=92.35  E-value=0.16  Score=37.29  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=12.8

Q ss_pred             CCCCCCCcEEeCcCCccccccC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      |..+++|++|+|++|.+++.+|
T Consensus       117 ~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A          117 FVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccCCCCEEECCCCcccccCc
Confidence            4556666666666666655443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=92.27  E-value=0.13  Score=37.75  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=17.9

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +|+..|..+++|+.|+|++|.+++..|
T Consensus       575 l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          575 LPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             CCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            445545677777777777777776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=92.25  E-value=0.2  Score=32.60  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=12.1

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      |..+++|++|+|++|.+++
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCC
T ss_pred             hCcCcCCCEEECCCCcCCc
Confidence            4566666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=92.23  E-value=0.21  Score=34.19  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=14.1

Q ss_pred             CCCCCCCCCCcEEeCcCCcccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..+..+++|+.|+|++|.+++
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSB
T ss_pred             hhhccCCCCCCEEECCCCcCCc
Confidence            3334667777777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=91.83  E-value=0.074  Score=39.50  Aligned_cols=26  Identities=12%  Similarity=0.122  Sum_probs=20.6

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      ||.. +..+++|+.|+|++|.|+|.+|
T Consensus       276 lp~~-l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          276 LPES-LIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCGG-GGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCHH-HhhccccCEEEecCCCCCCcCH
Confidence            5444 4788999999999999888765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=91.65  E-value=0.15  Score=36.36  Aligned_cols=25  Identities=20%  Similarity=0.386  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..+..+++|++|+|++|.+++.+|
T Consensus       487 ~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          487 PTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             hhhhhcccCCCEEeCCCCcCCCCCH
Confidence            3334788888888888888887655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=91.62  E-value=0.095  Score=38.60  Aligned_cols=27  Identities=11%  Similarity=0.128  Sum_probs=22.2

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      ||..+ ..+++|+.|+|++|.|+|.+|.
T Consensus       222 lp~~l-~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          222 IPENI-LSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CCGGG-GGSCTTEEEECCSSSCCHHHHH
T ss_pred             cCHHH-hcCCCCCEEEeeCCcCCCcCHH
Confidence            65554 6699999999999999998773

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=91.01  E-value=0.24  Score=34.68  Aligned_cols=18  Identities=39%  Similarity=0.383  Sum_probs=10.7

Q ss_pred             CCCCCCCcEEeCcCCccc
Q 037422           77 FVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~s   94 (100)
                      |..+++|++|+|++|.++
T Consensus       143 ~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             SSSCTTCCEEECCSCCCC
T ss_pred             hcccCCCCEEECCCCCcc
Confidence            455666666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=90.92  E-value=0.2  Score=30.47  Aligned_cols=22  Identities=32%  Similarity=0.267  Sum_probs=13.9

Q ss_pred             cCCCCCCCCCCCcEEeCcCCcc
Q 037422           72 INMSLFVPFQELHVLDLWNNRF   93 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~   93 (100)
                      +++..+..+++|++|+|++|.+
T Consensus        79 ~~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           79 IGEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             ECSCHHHHCTTCCEEECCSCCC
T ss_pred             cCcchhhcCCCCCEEECCCCcC
Confidence            4344335667777777777766

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=90.87  E-value=0.25  Score=33.00  Aligned_cols=18  Identities=22%  Similarity=0.111  Sum_probs=8.8

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|++|+|++|.+++
T Consensus       141 ~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             GGGSSEEEEECTTSCCCE
T ss_pred             hccCCCCEEECCCCCCCc
Confidence            444455555555554444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=90.57  E-value=0.26  Score=34.37  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=15.9

Q ss_pred             CCCCCCCCCCcEEeCcCCccccc
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      +..|..+++|+.|+|++|++++.
T Consensus       248 ~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          248 RNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCC
T ss_pred             hhhhcCCCCCCEEECCCCCCCcc
Confidence            33456777788888888877753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=90.48  E-value=0.29  Score=31.94  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      .++.|+++++     .+  .+   +++  +..+++|++|+|++|.+++
T Consensus        64 ~L~~L~L~~N-----~i--~~---~~~--l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           64 NLKELHLSHN-----QI--SD---LSP--LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             TCCEEECCSS-----CC--CC---CGG--GTTCSSCCEEECCSSCCSC
T ss_pred             CCCEEECCCC-----cc--CC---Chh--hccCCCCCEEECCCCccCC
Confidence            4566666664     33  22   323  3667777777777776665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=90.45  E-value=0.19  Score=31.22  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=19.7

Q ss_pred             CCCCCCCcEEeCcCCccccccCC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +..+++|++|+|++|.+++..|.
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~  106 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIP  106 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSC
T ss_pred             hhcCCCCCEEEeECCccCcccCh
Confidence            48899999999999999986553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=90.02  E-value=0.017  Score=36.10  Aligned_cols=38  Identities=29%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      .++.++++++     .+  .+   +| . +..+++|++|+|++|.++ .||
T Consensus        49 ~L~~L~ls~n-----~l--~~---l~-~-~~~l~~L~~L~l~~n~l~-~l~   86 (198)
T 1ds9_A           49 ACKHLALSTN-----NI--EK---IS-S-LSGMENLRILSLGRNLIK-KIE   86 (198)
T ss_dssp             TCSEEECSEE-----EE--SC---CC-C-HHHHTTCCEEEEEEEEEC-SCS
T ss_pred             CCCEEECCCC-----CC--cc---cc-c-cccCCCCCEEECCCCCcc-ccc
Confidence            5667777764     34  22   43 3 477888888999888887 555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=88.99  E-value=0.36  Score=33.66  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=16.8

Q ss_pred             CCCCCCCCCCcEEeCcCCccccccC
Q 037422           74 MSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        74 ~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..|..+++|+.|+|++|.+++..|
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             hhhhccCccCCEEECCCCceeEECh
Confidence            3445777777777777777766544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=88.22  E-value=0.42  Score=33.60  Aligned_cols=21  Identities=10%  Similarity=0.150  Sum_probs=11.4

Q ss_pred             CCCCCCcEEeCcCCccccccC
Q 037422           78 VPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      ..+++|+.|++++|.+++.+|
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG
T ss_pred             ccCCCCCEEeCCCCccCccch
Confidence            455555555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=88.07  E-value=0.12  Score=34.67  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=14.6

Q ss_pred             CCCCCCCcEEeCcCCccccccC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..+++|++|+|++|.+++..|
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGG
T ss_pred             hhccccCCEEEccCCccccccC
Confidence            3566777777777777766544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=87.47  E-value=0.46  Score=30.97  Aligned_cols=18  Identities=22%  Similarity=0.621  Sum_probs=8.9

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|+.|+|++|.+++
T Consensus       125 ~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             TTCTTCCEEECTTSCCCB
T ss_pred             cCcccccEEECCCCcCCC
Confidence            445555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=86.23  E-value=0.51  Score=31.48  Aligned_cols=43  Identities=16%  Similarity=-0.052  Sum_probs=27.3

Q ss_pred             CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      ..+..|+|+++     .+  .+...+ .. +..+ .|+.|+|++|.+.+.+|.
T Consensus       196 ~~L~~L~Ls~N-----~i--~~~~~l-~~-l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          196 PNLKILNLSGN-----EL--KSEREL-DK-IKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TTCCEEECTTS-----CC--CSGGGG-GG-GTTS-CCSEEECTTSTTGGGCSS
T ss_pred             CCCCEEECCCC-----cc--CCchhh-hh-cccC-CcceEEccCCcCccccCc
Confidence            35778888876     34  221002 11 1334 899999999999988773

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=85.99  E-value=0.65  Score=32.87  Aligned_cols=19  Identities=16%  Similarity=0.141  Sum_probs=14.6

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      ++.+++|++|+|++|.|++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC
T ss_pred             cccCCCCCEEECcCCCCce
Confidence            3777888888888887776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=85.14  E-value=0.6  Score=34.50  Aligned_cols=18  Identities=22%  Similarity=0.244  Sum_probs=8.5

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..|++|+.|+|++|.|++
T Consensus       172 ~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             TTCTTCCEEECCSSCCCB
T ss_pred             ccCCCCCEEECcCCCCCC
Confidence            444444444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=84.56  E-value=0.71  Score=30.49  Aligned_cols=18  Identities=22%  Similarity=0.244  Sum_probs=9.4

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|+.|+|++|.+++
T Consensus       175 ~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TTCTTCCEEECCSSCCCB
T ss_pred             cCCCccCEEECCCCcCCC
Confidence            455555555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=84.51  E-value=0.94  Score=29.91  Aligned_cols=18  Identities=22%  Similarity=0.287  Sum_probs=11.6

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|++|+|++|.+++
T Consensus       109 ~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             TTCTTCCEEECTTSCCCC
T ss_pred             ccCCCCCEEECCCCcCCC
Confidence            566666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=83.96  E-value=0.85  Score=33.68  Aligned_cols=19  Identities=21%  Similarity=0.358  Sum_probs=12.9

Q ss_pred             CCCCCCcEEeCcCCccccc
Q 037422           78 VPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~   96 (100)
                      ..|++|+.|+|++|.+++.
T Consensus       194 ~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTCTTCSEEECCSEEEECC
T ss_pred             ccCCCCCEEEccCCcCcCC
Confidence            6667777777777766653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=83.67  E-value=1.1  Score=29.83  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=12.0

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|+.|+|++|.+++
T Consensus       104 ~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             TTCTTCCEEECTTSCCCC
T ss_pred             cCCCCCCEEECCCCCCCC
Confidence            566667777777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=83.28  E-value=0.89  Score=30.23  Aligned_cols=18  Identities=22%  Similarity=0.302  Sum_probs=9.9

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|+.|+|++|.+++
T Consensus       192 ~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             GGCTTCCEEECTTSCCCB
T ss_pred             cCCCCCCEEEccCCccCc
Confidence            455555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=81.95  E-value=0.11  Score=35.55  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=12.0

Q ss_pred             CCCCCCcEEeCcCCcccccc
Q 037422           78 VPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      .++++|++|+|++|.|++..
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTS
T ss_pred             hcCCCceEEEccCCcCCcch
Confidence            34566666666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=81.47  E-value=1.4  Score=30.94  Aligned_cols=18  Identities=28%  Similarity=0.449  Sum_probs=11.8

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|++|+|++|.+++
T Consensus       109 ~~l~~L~~L~L~~n~l~~  126 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQITD  126 (466)
T ss_dssp             TTCTTCCEEECCSSCCCC
T ss_pred             cCCCCCCEEECCCCCCCC
Confidence            566666666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=80.69  E-value=0.3  Score=30.32  Aligned_cols=23  Identities=17%  Similarity=0.084  Sum_probs=18.7

Q ss_pred             CCCCCCCcEEeCcCCccccccCC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +..+++|++|++++|.+++.+|.
T Consensus       136 l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          136 LAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HTTTTTCSEEEECSCHHHHHHHT
T ss_pred             HhcCCCCCEEEecCCcccccccc
Confidence            47888999999999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	95.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	95.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	94.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	93.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	93.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	92.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	92.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	92.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	91.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	91.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	90.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	90.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	87.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	86.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	85.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	85.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	85.1
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	85.02
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	84.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	83.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	82.99

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=1.2e-17  Score=111.92  Aligned_cols=82  Identities=32%  Similarity=0.412  Sum_probs=63.1

Q ss_pred             ChHHHHHhhcccCCcccccccccCCcccCCCCCCce--eeeEEecCC--CCcEEEEEcCcCCcCCCCCCCCCCcccCCCC
Q 037422            1 MGLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCS--WERIKCNAT--TGWVMELSLSDAIRVNSNDVSDGFPIINMSL   76 (100)
Q Consensus         1 ~~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~--w~gi~C~~~--~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~   76 (100)
                      +||++||+.+.++   .    .+.+|.  .++|||.  |.||.|+..  .+||++|+|.++     .+  .|...||+++
T Consensus         9 ~aLl~~k~~~~~~---~----~l~sW~--~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-----~l--~g~~~lp~~l   72 (313)
T d1ogqa_           9 QALLQIKKDLGNP---T----TLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----NL--PKPYPIPSSL   72 (313)
T ss_dssp             HHHHHHHHHTTCC---G----GGTTCC--TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----CC--SSCEECCGGG
T ss_pred             HHHHHHHHHCCCC---C----cCCCCC--CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-----CC--CCCCCCChHH
Confidence            3799999999876   1    588995  5779994  999999853  348999999986     44  4432366664


Q ss_pred             CCCCCCCcEEeCcC-CccccccCC
Q 037422           77 FVPFQELHVLDLWN-NRFEGWEEN   99 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~-N~~sG~iP~   99 (100)
                       ++|++|++|||++ |+|+|.||+
T Consensus        73 -~~L~~L~~L~Ls~~N~l~g~iP~   95 (313)
T d1ogqa_          73 -ANLPYLNFLYIGGINNLVGPIPP   95 (313)
T ss_dssp             -GGCTTCSEEEEEEETTEESCCCG
T ss_pred             -hcCcccccccccccccccccccc
Confidence             8888888888886 788888885

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.89  E-value=2.1e-06  Score=56.30  Aligned_cols=30  Identities=23%  Similarity=0.222  Sum_probs=25.9

Q ss_pred             CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           67 DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        67 ~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +|.  +|..+ +.|++|++|||++|+|+|.||.
T Consensus       257 ~g~--iP~~l-~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         257 YGT--LPQGL-TQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEC--CCGGG-GGCTTCCEEECCSSEEEEECCC
T ss_pred             ccc--CChHH-hCCCCCCEEECcCCcccccCCC
Confidence            555  76664 9999999999999999999995

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.00045  Score=42.04  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             ceeeeEEecCC---------CCcEEEEEcCcC-CcC-C-----CCCCC------CC--CcccCCCCCCCCCCCcEEeCcC
Q 037422           35 CSWERIKCNAT---------TGWVMELSLSDA-IRV-N-----SNDVS------DG--FPIINMSLFVPFQELHVLDLWN   90 (100)
Q Consensus        35 C~w~gi~C~~~---------~~~v~~l~l~~~-~~~-~-----~~l~~------~g--~~~i~~~~~~~l~~L~~L~Ls~   90 (100)
                      |.|..|.|+..         ...++.|+|+++ +.. .     ..+.+      .+  ...+++..+..+++|++|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            67888888631         125678888877 322 0     00100      00  0013344456777788888888


Q ss_pred             Cccccc
Q 037422           91 NRFEGW   96 (100)
Q Consensus        91 N~~sG~   96 (100)
                      |+++.-
T Consensus        88 N~l~~l   93 (192)
T d1w8aa_          88 NKIKEI   93 (192)
T ss_dssp             CCCCEE
T ss_pred             cccccc
Confidence            877653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.003  Score=37.30  Aligned_cols=26  Identities=23%  Similarity=0.097  Sum_probs=18.9

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      |++..|..+++|++|+|++|+|+ .||
T Consensus        71 i~~~~f~~l~~L~~L~Ls~N~l~-~l~   96 (156)
T d2ifga3          71 VAPDAFHFTPRLSRLNLSFNALE-SLS   96 (156)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred             cccccccccccccceeccCCCCc-ccC
Confidence            55555578888888888888887 444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.96  E-value=0.0037  Score=37.75  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=18.2

Q ss_pred             cCCCCCCCCCCCcEEeCcCCcccccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      +++..|..+++|++|+|++|+|++-.
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             cCHHHHhCCCcccccccCCccccccC
Confidence            55555677788888888888777643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0047  Score=39.02  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=21.7

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +++..|..+++|++|||++|+|+ .||.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cCccccccccccceeecccCCCc-ccCh
Confidence            45555688999999999999988 7875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0057  Score=37.74  Aligned_cols=55  Identities=20%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             ceeeeEEecCC---------CCcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           35 CSWERIKCNAT---------TGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        35 C~w~gi~C~~~---------~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      |....|.|...         ...++.|+++++     .+  . .  +++..|..+++|++|+|++|.+...||.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n-----~i--~-~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~   71 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT-----KL--R-V--IQKGAFSGFGDLEKIEISQNDVLEVIEA   71 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESC-----CC--C-E--ECTTTTTTCTTCCEEEEESCTTCCEECS
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCC-----cC--C-c--cChhHhhccchhhhhhhccccccceeec
Confidence            56667888531         124667777764     44  2 2  6555568899999999999998877664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.56  E-value=0.014  Score=37.20  Aligned_cols=61  Identities=21%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             CceeeeEEecCC---------CCcEEEEEcCcC-CcC-----CCCCCC------CC--CcccCCCCCCCCCCCcEEeCcC
Q 037422           34 CCSWERIKCNAT---------TGWVMELSLSDA-IRV-----NSNDVS------DG--FPIINMSLFVPFQELHVLDLWN   90 (100)
Q Consensus        34 ~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~-----~~~l~~------~g--~~~i~~~~~~~l~~L~~L~Ls~   90 (100)
                      -|.|..|.|+..         ...++.|+++++ +..     ...+..      .+  ...+++..|..+++|+.|++++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            378999999641         134777888876 322     011100      00  0013343356777777777777


Q ss_pred             Cccc
Q 037422           91 NRFE   94 (100)
Q Consensus        91 N~~s   94 (100)
                      |+++
T Consensus        89 n~l~   92 (305)
T d1xkua_          89 NQLK   92 (305)
T ss_dssp             SCCS
T ss_pred             CccC
Confidence            7765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.013  Score=34.40  Aligned_cols=53  Identities=11%  Similarity=0.150  Sum_probs=34.5

Q ss_pred             ceeeeEEecCC-----------CCcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccc
Q 037422           35 CSWERIKCNAT-----------TGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        35 C~w~gi~C~~~-----------~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      +.++++.|...           ..++++|.+.++    ..+   ..  |++..|..+++|+.|+|++|+++.-
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n----~~l---~~--i~~~~f~~l~~L~~L~Ls~N~l~~i   71 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ----QHL---QH--LELRDLRGLGELRNLTIVKSGLRFV   71 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSC----SSC---CE--ECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCC----ccc---cc--cCchhhccccccCcceeeccccCCc
Confidence            34667777531           124566776543    123   12  6555568999999999999998763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.70  E-value=0.012  Score=33.29  Aligned_cols=19  Identities=32%  Similarity=0.401  Sum_probs=14.1

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..+++|+.|++++|.++.
T Consensus        61 ~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCS
T ss_pred             cccccccCeEECCCCccCC
Confidence            3777788888888887753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.64  E-value=0.043  Score=34.76  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=15.8

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccc
Q 037422           72 INMSLFVPFQELHVLDLWNNRFE   94 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~s   94 (100)
                      +|.. |..+++|++|+|++|+++
T Consensus       234 lp~~-l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         234 VPGG-LADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCTT-TTTCSSCCEEECCSSCCC
T ss_pred             cccc-cccccCCCEEECCCCccC
Confidence            5444 377888888888888766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.017  Score=36.28  Aligned_cols=18  Identities=28%  Similarity=0.359  Sum_probs=12.4

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      +.+++|++|+|++|++++
T Consensus        74 ~~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             SCCTTCCEEECCSSCCSS
T ss_pred             cccccccccccccccccc
Confidence            566777777777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.53  E-value=0.044  Score=35.38  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=18.4

Q ss_pred             CCCCCCCcEEeCcCCccccccC
Q 037422           77 FVPFQELHVLDLWNNRFEGWEE   98 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG~iP   98 (100)
                      +..+++|++|+|++|++++-+|
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG
T ss_pred             HcCCCCCCEEECCCCcCCCChh
Confidence            4888999999999999987554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.52  E-value=0.045  Score=30.67  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422           47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..++.++++++     .+  . .  +|+. +..+++|+.|++++|.++.
T Consensus        20 ~~L~~L~ls~N-----~l--~-~--lp~~-~~~l~~L~~L~l~~N~i~~   57 (124)
T d1dcea3          20 LLVTHLDLSHN-----RL--R-A--LPPA-LAALRCLEVLQASDNALEN   57 (124)
T ss_dssp             TTCCEEECCSS-----CC--C-C--CCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCC-----cc--C-c--chhh-hhhhhcccccccccccccc
Confidence            35788888886     45  2 2  6555 4889999999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.052  Score=33.12  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=22.1

Q ss_pred             cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422           72 INMSLFVPFQELHVLDLWNNRFEGWEEN   99 (100)
Q Consensus        72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~   99 (100)
                      +|+..|..+++|++|+|++|.++ .||.
T Consensus       192 l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         192 LPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             CCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             ccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            65655689999999999999998 5654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.085  Score=30.82  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=24.4

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      .+..|+++++     .+  . .  + +. +..+++|++|+|++|.++.
T Consensus        42 ~L~~L~Ls~N-----~i--~-~--l-~~-~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          42 QFDAIDFSDN-----EI--R-K--L-DG-FPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             CCSEEECCSS-----CC--C-E--E-CC-CCCCSSCCEEECCSSCCCE
T ss_pred             cCCEEECCCC-----CC--C-c--c-CC-cccCcchhhhhcccccccC
Confidence            4566666664     33  1 1  4 22 4788999999999998875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.1  Score=32.74  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=12.4

Q ss_pred             CCCCCCCCCcEEeCcCCccccc
Q 037422           75 SLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        75 ~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      ..|..+++|++||++.|.+++.
T Consensus       195 ~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         195 HAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCC
T ss_pred             hHhhhhhhcccccccccccccc
Confidence            3345556666666666665543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.12  Score=32.41  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             EEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccccc
Q 037422           49 VMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWE   97 (100)
Q Consensus        49 v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~i   97 (100)
                      ++.|+|+++     .+  + .  +++..|..++.|++||+++|.+.+..
T Consensus        34 ~~~L~Ls~N-----~i--~-~--i~~~~f~~l~~L~~L~ls~n~l~~i~   72 (284)
T d1ozna_          34 SQRIFLHGN-----RI--S-H--VPAASFRACRNLTILWLHSNVLARID   72 (284)
T ss_dssp             CSEEECTTS-----CC--C-E--ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCEEECcCC-----cC--C-C--CCHHHhhccccccccccccccccccc
Confidence            567777775     44  2 2  66655689999999999999887643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=90.28  E-value=0.1  Score=31.64  Aligned_cols=19  Identities=21%  Similarity=0.321  Sum_probs=15.5

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..+++|++|+|++|+++.
T Consensus       191 l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGGCTTCCEEECTTSCCCB
T ss_pred             hcCCCCCCEEECcCCcCCC
Confidence            3778888888888888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=87.92  E-value=0.23  Score=29.46  Aligned_cols=17  Identities=18%  Similarity=0.155  Sum_probs=12.0

Q ss_pred             CCCCCCcEEeCcCCccc
Q 037422           78 VPFQELHVLDLWNNRFE   94 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~s   94 (100)
                      ..+++|++|+++.|.+.
T Consensus        81 ~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          81 KNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccccc
Confidence            67777777777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=86.54  E-value=0.28  Score=31.33  Aligned_cols=18  Identities=17%  Similarity=0.148  Sum_probs=12.8

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..|++|++|++++|.+.+
T Consensus        85 ~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          85 KNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             TTCTTCCEEECCSSCCCC
T ss_pred             cCCccccccccccccccc
Confidence            667777777777777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=85.82  E-value=0.35  Score=28.94  Aligned_cols=18  Identities=22%  Similarity=0.200  Sum_probs=11.2

Q ss_pred             CCCCCCcEEeCcCCcccc
Q 037422           78 VPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~sG   95 (100)
                      ..+++|++|++++|.+++
T Consensus        87 ~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             TTCTTCCEEECCSSCCCC
T ss_pred             ccCccccccccccccccc
Confidence            556666666666666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=85.32  E-value=0.44  Score=29.79  Aligned_cols=9  Identities=33%  Similarity=0.464  Sum_probs=4.5

Q ss_pred             EEEEEcCcC
Q 037422           49 VMELSLSDA   57 (100)
Q Consensus        49 v~~l~l~~~   57 (100)
                      ++.+++++.
T Consensus        40 l~~LdLs~~   48 (353)
T d1jl5a_          40 AHELELNNL   48 (353)
T ss_dssp             CSEEECTTS
T ss_pred             CCEEEeCCC
Confidence            345555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.045  Score=32.01  Aligned_cols=17  Identities=24%  Similarity=0.368  Sum_probs=11.6

Q ss_pred             CCCCCCcEEeCcCCccc
Q 037422           78 VPFQELHVLDLWNNRFE   94 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~s   94 (100)
                      ..+++|+.|||++|.++
T Consensus        88 ~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          88 QKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHSTTCCCCCCTTSCCC
T ss_pred             hhCCcccccccccCccc
Confidence            45677777777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=0.42  Score=27.65  Aligned_cols=39  Identities=21%  Similarity=0.080  Sum_probs=26.2

Q ss_pred             CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422           47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG   95 (100)
                      .++..|+++++     .+  . .  +++..+..+++|+.|+|++|+++.
T Consensus        63 ~~L~~L~ls~N-----~i--~-~--l~~~~~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          63 RRLKTLLVNNN-----RI--C-R--IGEGLDQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             SSCCEEECCSS-----CC--C-E--ECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             cchhhhhcccc-----cc--c-C--CCccccccccccccceeccccccc
Confidence            35666777765     34  1 1  545444678999999999998753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=84.85  E-value=0.37  Score=28.52  Aligned_cols=19  Identities=21%  Similarity=0.378  Sum_probs=16.7

Q ss_pred             CCCCCCCcEEeCcCCcccc
Q 037422           77 FVPFQELHVLDLWNNRFEG   95 (100)
Q Consensus        77 ~~~l~~L~~L~Ls~N~~sG   95 (100)
                      +..+++|+.|+|++|+++.
T Consensus       168 l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCCCCEEECCCCCCCC
Confidence            4889999999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=83.51  E-value=0.48  Score=28.41  Aligned_cols=16  Identities=19%  Similarity=0.291  Sum_probs=7.9

Q ss_pred             CCCCCCcEEeCcCCcc
Q 037422           78 VPFQELHVLDLWNNRF   93 (100)
Q Consensus        78 ~~l~~L~~L~Ls~N~~   93 (100)
                      ..++.|+++++++|.+
T Consensus        82 ~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          82 KNLTKITELELSGNPL   97 (227)
T ss_dssp             TTCCSCCEEECCSCCC
T ss_pred             cccccccccccccccc
Confidence            4445555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=82.99  E-value=0.53  Score=28.09  Aligned_cols=37  Identities=8%  Similarity=0.109  Sum_probs=26.2

Q ss_pred             cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccc
Q 037422           48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGW   96 (100)
Q Consensus        48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~   96 (100)
                      .++.+++.+.     .+  ..   ++ . +..+++|+.|+|++|.+++-
T Consensus        47 ~L~~L~l~~~-----~i--~~---l~-~-l~~l~~L~~L~L~~n~i~~l   83 (210)
T d1h6ta2          47 SIDQIIANNS-----DI--KS---VQ-G-IQYLPNVTKLFLNGNKLTDI   83 (210)
T ss_dssp             TCCEEECTTS-----CC--CC---CT-T-GGGCTTCCEEECCSSCCCCC
T ss_pred             CccEEECcCC-----CC--CC---ch-h-HhhCCCCCEEeCCCccccCc
Confidence            4667777764     33  21   32 2 37899999999999999873