Citrus Sinensis ID: 037427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------83
Protein Sequence
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEccccccEEccccccccccccccEEEccccccEEcccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEEcccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccHHHHHHcccccEEEccccEEcccccccccccccccEEEcccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccHHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccHcHcccccccEEEcccccccccccHHHcccccccccHHHHcccccccEEEEccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccHHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEccccccccccccccccccccHHHHHHHcccccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccHHHHHHHcccHHccccccccccccccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MMLVFFLLTIILegcwgtegcLEQERSALLRLKhdffndpfnlenwvddenhsdcckwegvecntstgrVKALYLSSKRQFLYSTAGqlnaslltpfqqletlhldsnniagfvengglerlsglsklkllnlgrnlfnnsIFSSLAGLSSLRTLSLGYNRLKGSIDVKetldnftnledltldYSSLHISILKSIAAFTSLKRLSIqngrvdgalgddeeglcrlghlqelhmggndlrgtlpclylnqltgnisssplihLTSIERLFLSYnqfqipfslepffnlsklkvfsgefneiyvepesshsttpkfqlesvslsgsdihatfpkflynqhdlelvdfsdsnlkgefpnwllknnpnlstLVLRnnslsgpfqtpiqphwhldalhvsknffqgnipleigvyfpshlamgcFNLEYLVLSEnslhgqlfskKNYLRKLARLHLdanyftgeipkslsncsrleglymsdnnlygniparlgnlssLNDIMMASnhlqgpiplefcqlnYLEILdlsennisgslpscsshstiQQVHLsknmlygplkygtffnrssivtldlsynsfsgniPYWIERLIRLRYLILANnnlegevpnqlcglkqlrlidlsnnnlfgqipgcldntslhnngdnvgssaptfnpnrrttyfvgpsilekeesiMFTTKEisfsykgkplnkmygvdlscnkltgeippqigkltniralnfshnnltgvipvsfsnlnqvesldvshnnlngkippqLVELNALVVFSVAHnnlsaaernpgpyclktwpcngdyqcridcstmyngeghckyVTAIyaphtcickykc
Flexible Loop (DISEMBL)
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVepesshsttpKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDanyftgeipkslsNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVgssaptfnpnrrTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC
Low Complexity Region (SEG)
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENgglerlsglsklkllnlgrnlFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWierlirlrylilannnlEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC
Disordered region (IsUnstruct)
**LVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYV********************GSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG*******HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL******************RTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKY**
Disordered Region (DISOPRED)
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG*********FNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIY***********
Disordered Region (DISEMBL)
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE**********FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP**********VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC
Disordered Region (DISPRO)
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCIC***C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	829	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.880	0.584	0.292	4e-62
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.861	0.570	0.298	5e-58
Q9FL28	1173	LRR receptor-like serine/	no	no	0.886	0.626	0.286	1e-54
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.805	0.588	0.286	3e-50
Q9LHP4	1141	Receptor-like protein kin	no	no	0.683	0.496	0.303	5e-50
Q9LP24	1120	Probable leucine-rich rep	no	no	0.806	0.597	0.282	1e-49
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.761	0.529	0.301	2e-49
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.790	0.583	0.291	4e-47
P93194	1109	Receptor-like protein kin	N/A	no	0.605	0.452	0.289	7e-47
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.826	0.567	0.285	9e-47

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  240 bits (612), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 255/871 (29%), Positives = 386/871 (44%), Gaps = 141/871 (16%)

Query: 17  GTEGCLEQERSALLRLKHDFFNDPFN---LENWVDDENHSDCCKWEGVEC-NTSTGRVKA 72
           G  G +  +   LL +K     +P     L  W  D  + + C W GV C NT   RV A
Sbjct: 18  GQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSD--NINYCSWTGVTCDNTGLFRVIA 75

Query: 73  LYLSSKRQFLYSTAGQLNASLLTPFQQLETL-HLD--SNNIAGFVENGGLERLSGLSKLK 129
           L L         T   L  S+   F + + L HLD  SNN+ G +       LS L+ L+
Sbjct: 76  LNL---------TGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTA----LSNLTSLE 122

Query: 130 LLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLH 189
            L L  N     I S L  L ++R+L +G N L G  D+ ETL N  NL+ L L    L 
Sbjct: 123 SLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVG--DIPETLGNLVNLQMLALASCRLT 180

Query: 190 ISILKSIAAFTSLKRLSIQNGRVDGAL---------------------GDDEEGLCRLGH 228
             I   +     ++ L +Q+  ++G +                     G     L RL +
Sbjct: 181 GPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLEN 240

Query: 229 LQELHMGGNDLRGTLPC------------LYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
           L+ L++  N L G +P             L  NQL G I  S L  L +++ L LS N  
Sbjct: 241 LEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKS-LADLGNLQTLDLSANNL 299

Query: 277 --QIPFSLEPFFNLSKLKVFSGEFNEIYVE-PESSHSTTPKFQLESVSLSGSDIHATFPK 333
             +IP   E F+N+S+L       N +    P+S  S      LE + LSG+ +    P 
Sbjct: 300 TGEIP---EEFWNMSQLLDLVLANNHLSGSLPKSICSNNTN--LEQLVLSGTQLSGEIPV 354

Query: 334 FLYNQHDLELVDFSDSNLKGEFPNWL-----------------------LKNNPNLSTLV 370
            L     L+ +D S+++L G  P  L                       + N  NL  LV
Sbjct: 355 ELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLV 414

Query: 371 LRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
           L +N+L G     I     L+ L + +N F G IP EIG          C +L+ + +  
Sbjct: 415 LYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIG---------NCTSLKMIDMFG 465

Query: 431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
           N   G++      L++L  LHL  N   G +P SL NC +L  L ++DN L G+IP+  G
Sbjct: 466 NHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG 525

Query: 491 NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL-PSCSSHS--------- 540
            L  L  +M+ +N LQG +P     L  L  ++LS N ++G++ P C S S         
Sbjct: 526 FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNN 585

Query: 541 --------------TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE 586
                          + ++ L KN L G + + T      +  LD+S N+ +G IP  + 
Sbjct: 586 GFEDEIPLELGNSQNLDRLRLGKNQLTGKIPW-TLGKIRELSLLDMSSNALTGTIPLQLV 644

Query: 587 RLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS----LHNNG 642
              +L ++ L NN L G +P  L  L QL  + LS+N     +P  L N +    L  +G
Sbjct: 645 LCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDG 704

Query: 643 DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL 702
           +++  S P    N      +    L+K +   F+    S       L+K+Y + LS N L
Sbjct: 705 NSLNGSIPQEIGNLGALNVLN---LDKNQ---FSG---SLPQAMGKLSKLYELRLSRNSL 755

Query: 703 TGEIPPQIGKLTNIR-ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761
           TGEIP +IG+L +++ AL+ S+NN TG IP +   L+++E+LD+SHN L G++P  + ++
Sbjct: 756 TGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDM 815

Query: 762 NALVVFSVAHNNLSAAERNPGPYCLKTWPCN 792
            +L   +V+ NNL    +         WP +
Sbjct: 816 KSLGYLNVSFNNLGGKLKKQ----FSRWPAD 842

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 249/835 (29%), Positives = 379/835 (45%), Gaps = 121/835 (14%)

Query: 28  ALLRLKHDFFNDPFN---LENWVDDENHSDCCKWEGVECNTSTGR-VKALYLSSKRQFLY 83
            LL LK+ F  +P     L +W  +      C W GV C    GR +  L LS       
Sbjct: 32  TLLELKNSFITNPKEEDVLRDW--NSGSPSYCNWTGVTCG---GREIIGLNLSG-----L 81

Query: 84  STAGQLNASLLTPFQQLETLHLDSNNIAGFVE--------------------NGGL-ERL 122
              G ++ S+   F  L  + L SN + G +                     +G +  +L
Sbjct: 82  GLTGSISPSI-GRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQL 140

Query: 123 SGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
             L  LK L LG N  N +I  +   L +L+ L+L   RL G I  +        L+ L 
Sbjct: 141 GSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSR--FGRLVQLQTLI 198

Query: 183 LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT 242
           L  + L   I   I   TSL   +    R++G+L  +   L RL +LQ L++G N   G 
Sbjct: 199 LQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE---LNRLKNLQTLNLGDNSFSGE 255

Query: 243 LPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFFNLSKLKV----FSG 296
           +P             S L  L SI+ L L  NQ Q  IP  L    NL  L +     +G
Sbjct: 256 IP-------------SQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTG 302

Query: 297 EFNE----------IYVEPESSHSTTPKF------QLESVSLSGSDIHATFPKFLYNQHD 340
             +E          + +       + PK        L+ + LS + +    P  + N   
Sbjct: 303 VIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS 362

Query: 341 LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFF 400
           L+L+D S++ L G+ P+ L +    L+ L L NNSL G   + I    +L    +  N  
Sbjct: 363 LKLLDLSNNTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNL 421

Query: 401 QGNIPLEIG-------VYFPSHLAMG--------CFNLEYLVLSENSLHGQLFSKKNYLR 445
           +G +P EIG       +Y   +   G        C  L+ +    N L G++ S    L+
Sbjct: 422 EGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query: 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL 505
            L RLHL  N   G IP SL NC ++  + ++DN L G+IP+  G L++L   M+ +N L
Sbjct: 482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 506 QGPIPLEFCQLNYLEILDLSENNISGSL-PSCSSHSTIQQVHLSKNMLYG--PLKYGTFF 562
           QG +P     L  L  ++ S N  +GS+ P C S S +    +++N   G  PL+ G   
Sbjct: 542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKST 600

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
           N   +  L L  N F+G IP    ++  L  L ++ N+L G +P +L   K+L  IDL+N
Sbjct: 601 N---LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNN 657

Query: 623 NNLFGQIPGCLDN----TSLHNNGDNVGSSAPT--FN-PNRRTTYFVGPSI--------- 666
           N L G IP  L        L  + +    S PT  F+  N  T +  G S+         
Sbjct: 658 NYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIG 717

Query: 667 -LEKEESIMFTTKEISF---SYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR-ALNF 721
            L+   ++     ++S    S  GK L+K++ + LS N LTGEIP +IG+L +++ AL+ 
Sbjct: 718 NLQALNALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query: 722 SHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           S+NN TG IP + S L ++ESLD+SHN L G++P Q+ ++ +L   ++++NNL  
Sbjct: 777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEG 831

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  215 bits (548), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 247/861 (28%), Positives = 377/861 (43%), Gaps = 126/861 (14%)

Query: 1   MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFN-LENW--VDDENHSDCCK 57
           + L FF   I L      +   E E  AL   K+   NDP   L +W  +    H   C 
Sbjct: 11  LTLTFFFFGIAL-----AKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRH---CN 62

Query: 58  WEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFV--E 115
           W G+ C+ STG V ++ L  K+       G L+ ++      L+ L L SN+  G +  E
Sbjct: 63  WTGITCD-STGHVVSVSLLEKQ-----LEGVLSPAIAN-LTYLQVLDLTSNSFTGKIPAE 115

Query: 116 NGGLERL---------------SGLSKLK---LLNLGRNLFNNSIFSSLAGLSSLRTLSL 157
            G L  L               SG+ +LK    L+L  NL +  +   +   SSL  +  
Sbjct: 116 IGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGF 175

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALG 217
            YN L G I   E L +  +L+      + L  SI  SI    +L  L +   ++ G + 
Sbjct: 176 DYNNLTGKI--PECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIP 233

Query: 218 DDEEGLCRLGHLQELHMGGNDLRGTLPC------------LYLNQLTGNISSSPLIHLTS 265
            D      L +LQ L +  N L G +P             LY NQLTG I +  L +L  
Sbjct: 234 RD---FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAE-LGNLVQ 289

Query: 266 IERLFLSYNQF--QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
           ++ L +  N+    IP SL   F L++L       N + V P S      +  LE ++L 
Sbjct: 290 LQALRIYKNKLTSSIPSSL---FRLTQLTHLGLSENHL-VGPISEEIGFLE-SLEVLTLH 344

Query: 324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPN--WLLKNNPNLSTLVLRNNSLSGPFQ 381
            ++    FP+ + N  +L ++    +N+ GE P    LL N  NLS     +N L+GP  
Sbjct: 345 SNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSA---HDNLLTGPIP 401

Query: 382 TPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG--------------CFNLEYLV 427
           + I     L  L +S N   G IP   G    + +++G              C NLE L 
Sbjct: 402 SSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLS 461

Query: 428 LSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA 487
           +++N+L G L      L+KL  L +  N  TG IP+ + N   L  LY+  N   G IP 
Sbjct: 462 VADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPR 521

Query: 488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVH 546
            + NL+ L  + M SN L+GPIP E   +  L +LDLS N  SG +P+  S   ++  + 
Sbjct: 522 EMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLS 581

Query: 547 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR----YLILANNNLE 602
           L  N   G +   +  + S + T D+S N  +G IP   E L  L+    YL  +NN L 
Sbjct: 582 LQGNKFNGSIP-ASLKSLSLLNTFDISDNLLTGTIPG--ELLASLKNMQLYLNFSNNLLT 638

Query: 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIP----GCLDNTSLHNNGDNVGSSAPTFNPNRRT 658
           G +P +L  L+ ++ IDLSNN   G IP     C +  +L  + +N+    P        
Sbjct: 639 GTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIP-------D 691

Query: 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRA 718
             F G                         ++ +  ++LS N  +GEIP   G +T++ +
Sbjct: 692 EVFQG-------------------------MDMIISLNLSRNSFSGEIPQSFGNMTHLVS 726

Query: 719 LNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE 778
           L+ S NNLTG IP S +NL+ ++ L ++ NNL G +P   V  N      + + +L  ++
Sbjct: 727 LDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSK 786

Query: 779 RNPGPYCLKTWPCNGDYQCRI 799
           +   P  +K    +   + R+
Sbjct: 787 KPLKPCTIKQKSSHFSKRTRV 807

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  201 bits (510), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 231/806 (28%), Positives = 353/806 (43%), Gaps = 138/806 (17%)

Query: 4   VFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVEC 63
           +FF+  +I           + E  AL   K +  +    L +W D    +  C W GV C
Sbjct: 7   LFFIFLVIYAPLVSYADESQAEIDALTAFKLNLHDPLGALTSW-DPSTPAAPCDWRGVGC 65

Query: 64  NTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLS 123
             +  RV  + L                    P  QL      S  I+        +R+S
Sbjct: 66  --TNHRVTEIRL--------------------PRLQL------SGRIS--------DRIS 89

Query: 124 GLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTL 183
           GL  L+ L+L  N FN +I +SLA  + L ++ L YN L G +     + N T+LE   +
Sbjct: 90  GLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKL--PPAMRNLTSLEVFNV 147

Query: 184 DYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTL 243
             + L   I   +   +SL+ L I +    G +     GL  L  LQ L++         
Sbjct: 148 AGNRLSGEI--PVGLPSSLQFLDISSNTFSGQI---PSGLANLTQLQLLNLS-------- 194

Query: 244 PCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFFNLSKLKVFSGEFNEI 301
                NQLTG I +S L +L S++ L+L +N  Q  +P ++    N S L   S   NEI
Sbjct: 195 ----YNQLTGEIPAS-LGNLQSLQYLWLDFNLLQGTLPSAIS---NCSSLVHLSASENEI 246

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELV----------------- 344
                +++   PK  LE +SLS ++   T P  L+    L +V                 
Sbjct: 247 GGVIPAAYGALPK--LEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTA 304

Query: 345 ---------DFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV 395
                    D  ++ + G FP WL  N  +L  L +  N  SG     I     L+ L +
Sbjct: 305 NCRTGLQVLDLQENRISGRFPLWL-TNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKL 363

Query: 396 SKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDAN 455
           + N   G IP+EI           C +L+ L    NSL GQ+     Y++ L  L L  N
Sbjct: 364 ANNSLTGEIPVEI---------KQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRN 414

Query: 456 YFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQ 515
            F+G +P S+ N  +LE L + +NNL G+ P  L  L+SL+++ ++ N   G +P+    
Sbjct: 415 SFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN 474

Query: 516 LNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
           L+ L  L+LS N  SG +P+                       G  F    +  LDLS  
Sbjct: 475 LSNLSFLNLSGNGFSGEIPAS---------------------VGNLFK---LTALDLSKQ 510

Query: 576 SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP---GC 632
           + SG +P  +  L  ++ + L  NN  G VP     L  LR ++LS+N+  G+IP   G 
Sbjct: 511 NMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGF 570

Query: 633 LDNTSLHNNGDN-VGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNK 691
           L      +  DN +  S P    N          +LE   + +        S     L +
Sbjct: 571 LRLLVSLSLSDNHISGSIPPEIGNCSAL-----EVLELRSNRLMGHIPADLSR----LPR 621

Query: 692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
           +  +DL  N L+GEIPP+I + +++ +L+  HN+L+GVIP SFS L+ +  +D+S NNL 
Sbjct: 622 LKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLT 681

Query: 752 GKIPPQLVELNA-LVVFSVAHNNLSA 776
           G+IP  L  +++ LV F+V+ NNL  
Sbjct: 682 GEIPASLALISSNLVYFNVSSNNLKG 707

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  199 bits (507), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 293/622 (47%), Gaps = 55/622 (8%)

Query: 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGN 237
           + D+ ++   L +S+ K++ AF SL++L+I    + G L    E L     L+ L +  N
Sbjct: 83  ITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTL---PESLGDCLGLKVLDLSSN 139

Query: 238 DLRGTLP------------CLYLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLE 283
            L G +P             L  NQLTG I    +   + ++ L L  N     IP  L 
Sbjct: 140 GLVGDIPWSLSKLRNLETLILNSNQLTGKIPPD-ISKCSKLKSLILFDNLLTGSIPTELG 198

Query: 284 PFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLEL 343
               L  +++  G   EI  +  S         +  + L+ + +    P  L     LE 
Sbjct: 199 KLSGLEVIRI--GGNKEISGQIPSEIGDCSNLTV--LGLAETSVSGNLPSSLGKLKKLET 254

Query: 344 VDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN 403
           +    + + GE P+ L  N   L  L L  NSLSG     I     L+ L + +N   G 
Sbjct: 255 LSIYTTMISGEIPSDL-GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGG 313

Query: 404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPK 463
           IP EIG          C NL+ + LS N L G + S    L  L    +  N F+G IP 
Sbjct: 314 IPEEIG---------NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPT 364

Query: 464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523
           ++SNCS L  L +  N + G IP+ LG L+ L      SN L+G IP        L+ LD
Sbjct: 365 TISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALD 424

Query: 524 LSENNISGSLPS-CSSHSTIQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGN 580
           LS N+++G++PS       + ++ L  N L G  P + G   N SS+V L L +N  +G 
Sbjct: 425 LSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIG---NCSSLVRLRLGFNRITGE 481

Query: 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640
           IP  I  L ++ +L  ++N L G+VP+++    +L++IDLSNN+L G +P  + + S   
Sbjct: 482 IPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLS--- 538

Query: 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESI--MFTTKEISFSYKGKPLNKMYGV--- 695
                G      + N+ +     P+ L +  S+  +  +K +        L    G+   
Sbjct: 539 -----GLQVLDVSANQFSGKI--PASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLL 591

Query: 696 DLSCNKLTGEIPPQIGKLTNIR-ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           DL  N+L+GEIP ++G + N+  ALN S N LTG IP   ++LN++  LD+SHN L G +
Sbjct: 592 DLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL 651

Query: 755 PPQLVELNALVVFSVAHNNLSA 776
            P L  +  LV  ++++N+ S 
Sbjct: 652 AP-LANIENLVSLNISYNSFSG 672

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  199 bits (505), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 223/790 (28%), Positives = 343/790 (43%), Gaps = 121/790 (15%)

Query: 25  ERSALLRLKHDFFNDPFNLENWVDDENHS---DCCKWEGVECNTSTGRVKALYLSSKRQF 81
           E +ALL+ K  F N    L +WV D N +    C  W GV CN S G ++ L L+     
Sbjct: 33  EANALLKWKSTFTNSS-KLSSWVHDANTNTSFSCTSWYGVSCN-SRGSIEELNLT----- 85

Query: 82  LYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS 141
                   N  +   FQ    +                     LS L  ++L  NL + +
Sbjct: 86  --------NTGIEGTFQDFPFI--------------------SLSNLAYVDLSMNLLSGT 117

Query: 142 IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTS 201
           I      LS L    L  N L G  ++  +L N  NL  L L  + L   I   +    S
Sbjct: 118 IPPQFGNLSKLIYFDLSTNHLTG--EISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMES 175

Query: 202 LKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI 261
           +  L++   ++ G++         LG+L+ L          +  LY N LTG I    L 
Sbjct: 176 MTDLALSQNKLTGSIP------SSLGNLKNL---------MVLYLYENYLTGVIPPE-LG 219

Query: 262 HLTSIERLFLSYNQF--QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLES 319
           ++ S+  L LS N+    IP +L    NL  L ++      + + PE  +  +    + +
Sbjct: 220 NMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGV-IPPEIGNMES----MTN 274

Query: 320 VSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGP 379
           ++LS + +  + P  L N  +L L+    + L G  P  L  N  ++  L L NN L+G 
Sbjct: 275 LALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKL-GNIESMIDLELSNNKLTGS 333

Query: 380 FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLV---LSENSLHGQ 436
             + +    +L  L++ +N+  G IP E+G            N+E ++   L+ N L G 
Sbjct: 334 IPSSLGNLKNLTILYLYENYLTGVIPPELG------------NMESMIDLQLNNNKLTGS 381

Query: 437 LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLN 496
           + S    L+ L  L+L  NY TG IP+ L N   +  L +S N L G++P   GN + L 
Sbjct: 382 IPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLE 441

Query: 497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSHSTIQQVHLSKNMLYGP 555
            + +  NHL G IP      ++L  L L  NN +G  P +      +Q + L  N L GP
Sbjct: 442 SLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGP 501

Query: 556 LK-------------------YGTFFNRSSIVT----LDLSYNSFSGNIPYWIERLIRLR 592
           +                     G  F    I      +D S+N F G I    E+  +L 
Sbjct: 502 IPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLG 561

Query: 593 YLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN----TSLHNNGDNVGSS 648
            LI++NNN+ G +P ++  + QL  +DLS NNLFG++P  + N    + L  NG+ +   
Sbjct: 562 ALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGR 621

Query: 649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEIS--FSYKGKPLNKMYGVDLSCNKLTGEI 706
            P            G S L   ES+  ++   S           K++ ++LS NK  G I
Sbjct: 622 VP-----------AGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSI 670

Query: 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVV 766
           P ++ KLT +  L+ SHN L G IP   S+L  ++ LD+SHNNL+G IP     + AL  
Sbjct: 671 P-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTN 729

Query: 767 FSVAHNNLSA 776
             +++N L  
Sbjct: 730 VDISNNKLEG 739

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 219/726 (30%), Positives = 330/726 (45%), Gaps = 95/726 (13%)

Query: 120 ERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLE 179
           + +S L  L+ L L  N F+  I   +  L  L+TL L  N L G +     L     L 
Sbjct: 83  KEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLL--PRLLSELPQL- 139

Query: 180 DLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDL 239
            L LD S  H S     + F SL  LS  +   +   G+    + +L +L  L+MG N  
Sbjct: 140 -LYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSF 198

Query: 240 RGTLP----------------CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFS 281
            G +P                C +   L   IS      L  + +L LSYN  +  IP S
Sbjct: 199 SGQIPSEIGNISLLKNFAAPSCFFNGPLPKEIS-----KLKHLAKLDLSYNPLKCSIPKS 253

Query: 282 LEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDL 341
                NLS L + S E   + + PE  +  +    L+S+ LS + +    P  L    ++
Sbjct: 254 FGELHNLSILNLVSAELIGL-IPPELGNCKS----LKSLMLSFNSLSGPLPLEL---SEI 305

Query: 342 ELVDFSDS--NLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
            L+ FS     L G  P+W+ K    L +L+L NN  SG     I+    L  L ++ N 
Sbjct: 306 PLLTFSAERNQLSGSLPSWMGKWKV-LDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNL 364

Query: 400 FQGNIPLEI-------GVYFPSHLAMG--------CFNLEYLVLSENSLHGQLFSKKNYL 444
             G+IP E+        +    +L  G        C +L  L+L+ N ++G +  +  + 
Sbjct: 365 LSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSI-PEDLWK 423

Query: 445 RKLARLHLDANYFTGEIPKSL----------SNCSRLEG--------------LYMSDNN 480
             L  L LD+N FTGEIPKSL          ++ +RLEG              L +SDN 
Sbjct: 424 LPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQ 483

Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSH 539
           L G IP  +G L+SL+ + + +N  QG IP+E      L  LDL  NN+ G +P   ++ 
Sbjct: 484 LTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITAL 543

Query: 540 STIQQVHLSKNMLYG--PLKYGTFFNRSSIVTL---------DLSYNSFSGNIPYWIERL 588
           + +Q + LS N L G  P K   +F++  +  L         DLSYN  SG IP  +   
Sbjct: 544 AQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGEC 603

Query: 589 IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSS 648
           + L  + L+NN+L GE+P  L  L  L ++DLS N L G IP  + N SL   G N+ ++
Sbjct: 604 LVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGN-SLKLQGLNLANN 662

Query: 649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 708
               N +   ++ +  S+++   +       +  S     L ++  +DLS N L+GE+  
Sbjct: 663 --QLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGN--LKELTHMDLSFNNLSGELSS 718

Query: 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS 768
           ++  +  +  L    N  TG IP    NL Q+E LDVS N L+G+IP ++  L  L   +
Sbjct: 719 ELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLN 778

Query: 769 VAHNNL 774
           +A NNL
Sbjct: 779 LAKNNL 784

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  190 bits (483), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 211/723 (29%), Positives = 326/723 (45%), Gaps = 68/723 (9%)

Query: 46  WVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHL 105
           W  + + +  C W G+ C+ S   V +L  +  R      +GQL   +    + L+ L L
Sbjct: 54  WKINASEATPCNWFGITCDDSK-NVASLNFTRSR-----VSGQLGPEI-GELKSLQILDL 106

Query: 106 DSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGS 165
            +NN +G + +     L   +KL  L+L  N F++ I  +L  L  L  L L  N L G 
Sbjct: 107 STNNFSGTIPS----TLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTG- 161

Query: 166 IDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCR 225
            ++ E+L     L+ L LDY++L   I +SI     L  LS+   +  G +    E +  
Sbjct: 162 -ELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNI---PESIGN 217

Query: 226 LGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP--FSLE 283
              LQ L++  N L G+LP               L  L ++  LF+  N  Q P  F   
Sbjct: 218 SSSLQILYLHRNKLVGSLP-------------ESLNLLGNLTTLFVGNNSLQGPVRFGSP 264

Query: 284 PFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLEL 343
              NL  L +   EF E  V P   + ++    L+++ +   ++  T P  L    +L +
Sbjct: 265 NCKNLLTLDLSYNEF-EGGVPPALGNCSS----LDALVIVSGNLSGTIPSSLGMLKNLTI 319

Query: 344 VDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN 403
           ++ S++ L G  P  L  N  +L+ L L +N L G   + +     L++L + +N F G 
Sbjct: 320 LNLSENRLSGSIPAEL-GNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGE 378

Query: 404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPK 463
           IP+EI             +L  L++ +N+L G+L  +   ++KL    L  N F G IP 
Sbjct: 379 IPIEI---------WKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPP 429

Query: 464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523
            L   S LE +    N L G IP  L +   L  + + SN L G IP        +    
Sbjct: 430 GLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFI 489

Query: 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY 583
           L ENN+SG LP  S   ++  +  + N   GP+  G+  +  ++ +++LS N F+G IP 
Sbjct: 490 LRENNLSGLLPEFSQDHSLSFLDFNSNNFEGPIP-GSLGSCKNLSSINLSRNRFTGQIPP 548

Query: 584 WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN----TSLH 639
            +  L  L Y+ L+ N LEG +P QL     L   D+  N+L G +P    N    T+L 
Sbjct: 549 QLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLV 608

Query: 640 NNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK----EISFSYKGKPLNKMYGV 695
            + +      P F P            L+K  ++         EI  S  G   + +Y +
Sbjct: 609 LSENRFSGGIPQFLPE-----------LKKLSTLQIARNAFGGEIPSSI-GLIEDLIYDL 656

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
           DLS N LTGEIP ++G L  +  LN S+NNLTG + V    L  +  +DVS+N   G IP
Sbjct: 657 DLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSLSV-LKGLTSLLHVDVSNNQFTGPIP 715

Query: 756 PQL 758
             L
Sbjct: 716 DNL 718

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  189 bits (481), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 172/594 (28%), Positives = 258/594 (43%), Gaps = 92/594 (15%)

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSY 273
           G  G+    +  L HL+++ + GN   G++P             S L + + +E + LS 
Sbjct: 79  GISGEFGPEISHLKHLKKVVLSGNGFFGSIP-------------SQLGNCSLLEHIDLSS 125

Query: 274 NQFQ--IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATF 331
           N F   IP +L    NL  L +F   FN +      S  + P   LE+V  +G+ ++ + 
Sbjct: 126 NSFTGNIPDTLGALQNLRNLSLF---FNSLIGPFPESLLSIP--HLETVYFTGNGLNGSI 180

Query: 332 PKFLYNQHDLELVDFSDSNLKGEFPNWL-----------------------LKNNPNLST 368
           P  + N  +L  +   D+   G  P+ L                       L N  NL  
Sbjct: 181 PSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVY 240

Query: 369 LVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVL 428
           L +RNNSL G           +D + +S N F G +P  +G          C +L     
Sbjct: 241 LDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLG---------NCTSLREFGA 291

Query: 429 SENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR 488
              +L G + S    L KL  L+L  N+F+G IP  L  C  +  L +  N L G IP  
Sbjct: 292 FSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGE 351

Query: 489 LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSHSTIQQVHL 547
           LG LS L  + + +N+L G +PL   ++  L+ L L +NN+SG LP   +    +  + L
Sbjct: 352 LGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLAL 411

Query: 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN 607
            +N   G +      N SS+  LDL+ N F+G+IP  +    +L+ L+L  N LEG VP+
Sbjct: 412 YENHFTGVIPQDLGAN-SSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPS 470

Query: 608 QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSIL 667
            L G   L  + L  NNL G +P                                    +
Sbjct: 471 DLGGCSTLERLILEENNLRGGLP----------------------------------DFV 496

Query: 668 EKEESIMFTTKEISFSYKGKP----LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSH 723
           EK+  + F     +F+    P    L  +  + LS N+L+G IPP++G L  +  LN SH
Sbjct: 497 EKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSH 556

Query: 724 NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777
           N L G++P   SN +++  LD SHN LNG IP  L  L  L   S+  N+ S  
Sbjct: 557 NILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGG 610

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  189 bits (480), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 233/815 (28%), Positives = 348/815 (42%), Gaps = 130/815 (15%)

Query: 22  LEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQF 81
           L ++   LL  K      P  L+NW+   + +D C + GV C  S  RV ++ LS+   F
Sbjct: 40  LYKDSQQLLSFKAALPPTPTLLQNWL---SSTDPCSFTGVSCKNS--RVSSIDLSN--TF 92

Query: 82  LYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS 141
           L S    L  S L P   LE+L L + N++G + +    +  G++ L  ++L  N  +  
Sbjct: 93  L-SVDFSLVTSYLLPLSNLESLVLKNANLSGSLTSAAKSQ-CGVT-LDSIDLAENTISGP 149

Query: 142 I--FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFT-NLEDLTLDY---SSLHISILKS 195
           I   SS    S+L++L+L  N L      KE L   T +L+ L L Y   S  ++    S
Sbjct: 150 ISDISSFGVCSNLKSLNLSKNFLDPP--GKEMLKGATFSLQVLDLSYNNISGFNLFPWVS 207

Query: 196 IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC---------- 245
              F  L+  SI+  ++ G++ + +       +L  L +  N+     P           
Sbjct: 208 SMGFVELEFFSIKGNKLAGSIPELD-----FKNLSYLDLSANNFSTVFPSFKDCSNLQHL 262

Query: 246 -LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE 304
            L  N+  G+I SS L     +  L L+ NQF       P  +L  L +   +F  +Y  
Sbjct: 263 DLSSNKFYGDIGSS-LSSCGKLSFLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPN 321

Query: 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP 364
             +    T    +  + LS ++     P+ L     LELVD S++N  G+ P   L    
Sbjct: 322 QLADLCKT----VVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLS 377

Query: 365 NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLE 424
           N+ T+VL  N   G           L+ L +S N   G IP  I           C    
Sbjct: 378 NIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGI-----------C---- 422

Query: 425 YLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN 484
                           K+ +  L  L+L  N F G IP SLSNCS+L  L +S N L G+
Sbjct: 423 ----------------KDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGS 466

Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQ 544
           IP+ LG+LS L D+++  N L G IP E   L  LE L L  N+++G +P+  S+ T   
Sbjct: 467 IPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCT--- 523

Query: 545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE 604
                                 +  + LS N  SG IP  + RL  L  L L NN++ G 
Sbjct: 524 ---------------------KLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGN 562

Query: 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGP 664
           +P +L   + L  +DL+ N L G IP  L   S        G+ A      +R  Y    
Sbjct: 563 IPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQS--------GNIAVALLTGKRYVYIKND 614

Query: 665 S---------------ILEKEESIMFTTKEISFS--YKG--KPL----NKMYGVDLSCNK 701
                           I +++   + T    +F+  Y+G  +P       M  +DLS NK
Sbjct: 615 GSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNK 674

Query: 702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761
           L G IP ++G +  +  LN  HN+L+G+IP     L  V  LD+S+N  NG IP  L  L
Sbjct: 675 LEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSL 734

Query: 762 NALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQ 796
             L    +++NNLS       P+   T+P   DY+
Sbjct: 735 TLLGEIDLSNNNLSGMIPESAPF--DTFP---DYR 764

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	829
255581263	912	serine-threonine protein kinase, plant-t	0.902	0.820	0.466	1e-169
224073436	1014	predicted protein [Populus trichocarpa]	0.922	0.754	0.398	1e-146
224112245	876	predicted protein [Populus trichocarpa]	0.869	0.823	0.419	1e-139
224123984	1016	predicted protein [Populus trichocarpa]	0.902	0.736	0.395	1e-138
224134891	953	predicted protein [Populus trichocarpa]	0.917	0.798	0.390	1e-134
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.896	0.507	0.379	1e-130
359483099	1231	PREDICTED: probable LRR receptor-like se	0.927	0.624	0.363	1e-126
255585991	743	serine-threonine protein kinase, plant-t	0.832	0.928	0.399	1e-125
224124000	920	predicted protein [Populus trichocarpa]	0.899	0.810	0.378	1e-124
224073422	969	predicted protein [Populus trichocarpa]	0.873	0.747	0.371	1e-123

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 384/823 (46%), Positives = 502/823 (60%), Gaps = 75/823 (9%)

Query: 7   LLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTS 66
           +L ++ E C   +GCL++ER+ALL+LK  FF+    L+ W+  E++ DCC+WE VEC++ 
Sbjct: 10  VLLVLSETC-CCKGCLDKERAALLQLK-PFFDSTLALQKWLGAEDNLDCCQWERVECSSI 67

Query: 67  TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSG-L 125
           TGRV  L L + R +  S    LNASL  PF++L++L L  N+I   VEN G ERLS  L
Sbjct: 68  TGRVTRLDLDTTRAYQSSRNWYLNASLFLPFEELKSLSLKGNSIVDCVENEGFERLSTRL 127

Query: 126 SKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDY 185
           S L++L+L  N FN SI SSL+  SSL++L+LG+N  +  I  ++ L NF NLE+L LD 
Sbjct: 128 SSLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQD-LPNFENLEELYLDK 186

Query: 186 SSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC 245
             L  S L+++   TSLK LS+    + GAL  + +GLC L HL+ L +  N+  G LP 
Sbjct: 187 IELENSFLQTVGVMTSLKVLSLSGCGLTGAL-PNVQGLCELIHLRVLDVSSNEFHGILPW 245

Query: 246 ------------LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKV 293
                       L  NQ  G+IS+SPL  L S+  L +S N FQ+PFSL PFFN S LK 
Sbjct: 246 CLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKH 305

Query: 294 FSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKG 353
             G+ N IY+E E  HS  P+FQL S+  SG  I  TFP FLY+Q++L+ VD S  +LKG
Sbjct: 306 IRGQNNAIYLEAEL-HSA-PRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKG 363

Query: 354 EFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFP 413
           EFPNWLL NN  L  L L NNSLSG  Q P+ PH +L AL +S N    +IPLEIG + P
Sbjct: 364 EFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLP 423

Query: 414 S-----------------------------------------HLAMGCFNLEYLVLSENS 432
                                                     HLA GCF+L  L+LS NS
Sbjct: 424 KLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNS 483

Query: 433 LHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNL 492
           L GQ+FSK+  L  L  L LD N+F+G IPKSLS  S L  + +SDN+L G IP  +GNL
Sbjct: 484 LQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNL 542

Query: 493 SSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNML 552
           S L ++++++N L+GPIP+EFCQL+YLE+LDL+ N++SG LPSC S S+I  VHLS+NM+
Sbjct: 543 SYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMI 602

Query: 553 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612
            GP     F     +VTLDLS N  +G IP  I  +  LR L L +N  +GE+P Q+CGL
Sbjct: 603 EGPWT-NAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGL 661

Query: 613 KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYF-VGPSILEKEE 671
            QL LI L++NNL G IP CL      +  D++    P         Y  V P       
Sbjct: 662 YQLSLIVLADNNLSGSIPSCLQ----LDQSDSLAPDVPPVPNPLNPYYLPVRP------- 710

Query: 672 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP 731
            + FTTK  S+SY+GK L+ + G+D SCNKLTGEIPP++G  + I +LN S+N  TG IP
Sbjct: 711 -MYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIP 769

Query: 732 VSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
            +FSNL Q+ESLD+S+NNLNG IP QL+EL  L  FSVAHNNL
Sbjct: 770 STFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNL 812

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 357/896 (39%), Positives = 485/896 (54%), Gaps = 131/896 (14%)

Query: 2   MLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGV 61
           ML+  LLT++ E      GCLE+ER  LL ++     D F+L +WVD  N   CC+W+G+
Sbjct: 5   MLLAILLTLVGEWYGRCYGCLEEERIGLLEIQSLIDPDGFSLRHWVDSSN---CCEWDGI 61

Query: 62  ECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLER 121
           EC+ +T RV  L LS  R   +     LNASL  PF++L++L L  N + G +EN G E 
Sbjct: 62  ECDNTTRRVIELSLSGARDQSFGDW-VLNASLFLPFKELQSLELRFNGLVGCLENEGFEV 120

Query: 122 LS------------------------GLSKLKLLNLG----------------------- 134
           LS                        GLS LK L+L                        
Sbjct: 121 LSSNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGSGFEIISSHLEKLDNLD 180

Query: 135 --RNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISI 192
              N+FN+SI S L GLS L++L+L  N L GS  V  T  N + LE+L LD +SL I+ 
Sbjct: 181 LSYNIFNDSILSHLRGLSYLKSLNLSGNMLLGSTTVNGTFFNSSTLEELYLDRTSLPINF 240

Query: 193 LKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CL----- 246
           L++I A   LK LS+    + G L    +G C L +L++L + GN+L G+LP CL     
Sbjct: 241 LQNIGALPDLKVLSVAECDLHGTL--PAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSS 298

Query: 247 ------YLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNE 300
                   NQ TGNI+S PL +LTS+E L LS N F++P S++PF N S LK FS E N+
Sbjct: 299 LQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNK 358

Query: 301 IYVEPESSHSTTPKFQLESVSLSGSD--IHATFPKFLYNQHDLELVDFSDSNLKGEFPNW 358
           +  EP +  +  PKFQL    LS +   ++   P FLY Q+D+ ++D S +N+   FP+W
Sbjct: 359 LVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSW 418

Query: 359 LLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAM 418
           LLKNN  L  L L NNS  G  Q    P+ ++  L +S N   G IP +I + FP+  ++
Sbjct: 419 LLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSL 478

Query: 419 --------GCF--------NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP 462
                   GC         +L+ L LS N L      K   L  +  L L  N   G++P
Sbjct: 479 RMANNGFTGCIPSCLGNISSLKILDLSNNQLS---IVKLEQLTTIWFLKLSNNNLGGQLP 535

Query: 463 KSLSNCSRLEGLYMSDNNLYGNI-------------------------PARLGNLSSLND 497
            S+ N S LE LY+  NN +G I                         P  L N + L  
Sbjct: 536 TSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIA 595

Query: 498 IMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLK 557
           I ++ N+ +GPI  +FC+LN LE LDLSENN+SG +PSC S   I  VHLS+N L GPL 
Sbjct: 596 IDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLT 655

Query: 558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL 617
           YG F+N SS+VT+DL  N+F+G+ P WI  L  L  L+L  N+ +GE+P QLC L+QL +
Sbjct: 656 YG-FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSI 714

Query: 618 IDLSNNNLFGQIPGCLDNTSLHNNGD----NVGSSAPTFNPNRRTTYFVGPSILEK---- 669
           +D+S N L G +P CL N +   +      ++G+   + +  +     +GP ++E     
Sbjct: 715 LDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNL 774

Query: 670 ---------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720
                    EE I FTTK + + YKGK L+ M G+DLS N   G IPP+ G L+ I +LN
Sbjct: 775 RKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLN 834

Query: 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
            SHNNLTG IP +FSNL Q+ESLD+S+NNLNG IPPQL ++  L VFSVAHNNLS 
Sbjct: 835 LSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSG 890

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 348/829 (41%), Positives = 462/829 (55%), Gaps = 108/829 (13%)

Query: 1   MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDP--FNLENWVDDENHSDCCKW 58
           M +V  ++ + L+G W   GCLE+ER ALL LK D FN P   +L +W+ D+ H  CC W
Sbjct: 7   MSMVLAIMMVSLQG-WLPLGCLEEERIALLHLK-DAFNYPNGTSLPSWIKDDAH--CCDW 62

Query: 59  EGVECNTSTGRVKALYLSSKRQFLYSTAGQ--LNASLLTPFQQLETLHLDSNNIAGFVE- 115
           E +EC++STGRV  L L S R       G    NASL  PFQQLE L L  N IAG+VE 
Sbjct: 63  EHIECSSSTGRVIELVLDSTRN---EEVGDWYFNASLFRPFQQLEWLSLSYNRIAGWVEI 119

Query: 116 -------------------------------------------NGGLERLSGLSKLKLLN 132
                                                       G +  L  LS L+ L 
Sbjct: 120 KGPNNLRYLSLKNITTNGSSFQLLSSLGAFPNLTTVYLNDNDFKGTILELQNLSSLEKLY 179

Query: 133 LGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISI 192
           L     + +    L  LSSL+ LSL    + G +  +  L+   NLE L    S+L  SI
Sbjct: 180 LNGCFLDENSIQILGALSSLKYLSL--YEVSGIVPSQGFLNILKNLEHLYSSNSTLDNSI 237

Query: 193 LKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTL-PCLYLNQL 251
           L+SI   TSLK L +   R++G L     GLC L +LQEL M  ND+ G L PCL     
Sbjct: 238 LQSIGTITSLKILELVKCRLNGQL---PIGLCNLNNLQELDMRDNDISGFLIPCL----- 289

Query: 252 TGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHST 311
                     +LTS++RL LS N  +IP SL P +NLSKLK F G  NEIY E E  H+ 
Sbjct: 290 ---------ANLTSLQRLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE-EDDHNL 339

Query: 312 TPKFQLESVSLSGSDIHA-TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLV 370
           +PKFQL+S+ LS     A  FP+FLY+Q +L+ +D ++  +KG+FPNWL++NN  L  L 
Sbjct: 340 SPKFQLQSLYLSNHGQGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLY 399

Query: 371 LRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
           L N SLSGPF  P   H +L  L +S N+ QG IP EIG + P         L  L +S 
Sbjct: 400 LENCSLSGPFLLPKNSHMNLSILSISMNYLQGQIPSEIGAHLP--------RLTVLSMSH 451

Query: 431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRL-EGLYMSDNNLYGNIPARL 489
           N  +G + S  + +  L  L L  N  TG IPK L+    L   L +S+N+L G IP  +
Sbjct: 452 NGFNGSIPSSLSNMSLLRDLDLSNNVLTGRIPKHLTTSLCLFNFLILSNNSLQGAIPDSM 511

Query: 490 GNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSHSTIQQVHLS 548
            N SSL  + +++N+L   IP     +++L+ LDLS NN SG LP + S+ ST++ V+LS
Sbjct: 512 SNCSSLQLLDVSNNNLSPRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLS 571

Query: 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ 608
           +N L G L    F+N S+++TLDLS+N+  G IP WI  L +LRYL+L+ N LEGE+P Q
Sbjct: 572 RNKLQG-LITKAFYNFSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQ 630

Query: 609 LCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILE 668
           LC L  L LIDLS+N+L G I  C+  TSL          AP        +     +I+E
Sbjct: 631 LCKLDGLTLIDLSHNHLSGNILSCM--TSL----------APF-------SALTDATIVE 671

Query: 669 KEESIM-FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLT 727
             +  + FTTK +S  Y+G  +    G+D SCN  TG+IPP+I  L+ I+ALN SHN+L 
Sbjct: 672 TSQQYLEFTTKNVSLIYRGSIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLI 731

Query: 728 GVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           G IP +FS L ++ESLD+SHN L+G+IPPQL EL +L +FSVAHNNLS 
Sbjct: 732 GPIPPTFSRLKEIESLDLSHNKLDGEIPPQLTELFSLEIFSVAHNNLSG 780

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 350/885 (39%), Positives = 467/885 (52%), Gaps = 137/885 (15%)

Query: 20  GCLEQERSALLRLKHDFFNDPFN----LENWVDD-ENHSDCCKWEGVECNTSTGRVKALY 74
           GCLE ER  LL +K     DP +    L +W+D+ E+  +CC+W G+ C+ +T RV  L 
Sbjct: 27  GCLEDERIGLLEIKA--LIDPNSVQGELSDWMDNKEDIGNCCEWSGIVCDNTTRRVIQLS 84

Query: 75  LSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLS---------GL 125
           L   R F       LNASL  PF++L++L L    + G  EN G   LS         GL
Sbjct: 85  LMRARDFRLGDW-VLNASLFLPFEELQSLDLGETGLVGCSENEGFGTLSSKLRKLHVLGL 143

Query: 126 S----------------------------------------------KLKLLNLGRNLFN 139
           S                                              KL+ L+L  N +N
Sbjct: 144 SYNKFYSDSILSCFTGLSSLKSLDLSWNTLTGSANFYGLNVLSSRLKKLENLHLRGNQYN 203

Query: 140 NSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF 199
           +SIFSSL G SSL++L L YN L GS  +  T  N T LE+L LD SSL ++ L +I   
Sbjct: 204 DSIFSSLTGFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPLNFLHNIGVL 263

Query: 200 TSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY------------ 247
            +LK LS     ++G L    +GLC L +L++L +  N+L G+LP  +            
Sbjct: 264 PALKVLSAGECDLNGTL--PAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLLDVS 321

Query: 248 LNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPES 307
            NQ  GNI+SSPL +L S+E + LS N FQ+P S++PF N S L+ FS + N +  EP S
Sbjct: 322 RNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMS 381

Query: 308 SHSTTPKFQLESVSLSGSDIHA---TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP 364
            H   PKFQL   SLS S   A     P FLYNQHDL ++D S ++  G FP+WLLKNN 
Sbjct: 382 FHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNT 441

Query: 365 NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAM------ 418
            L  L L  NS  G  Q    P+  + A+ +S N   G IP  I + F +   +      
Sbjct: 442 RLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNG 501

Query: 419 --GCF--------NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNC 468
             GC         +L  L LS N L   +   + ++  L  L L  N   G++P S+ N 
Sbjct: 502 LTGCIPSCLGNSSSLGVLDLSNNQL--SMVELEQFI-TLTFLKLSNNNLGGQLPASMVNS 558

Query: 469 SRLEGLYMSDNNLYGNI-------------------------PARLGNLSSLNDIMMASN 503
           SRL  LY+SDNN +G I                         P    NL+ +  I ++ N
Sbjct: 559 SRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKN 618

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 563
           H  GPIP+EFC+L+ L+ LDLS+NN+  S+PSC +   I  VHLSKN L GPL YG F+N
Sbjct: 619 HFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYG-FYN 677

Query: 564 RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
            SS+VTLDL  N+F+G+I  WI  L  L  L+L  NN +GE   QLC L+QL ++D+S N
Sbjct: 678 SSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQN 737

Query: 624 NLFGQIPGCLDNTSLHNN--------GDNVGSS--APTFNPNRRTTYFVGPSI--LEKEE 671
            L G +P CL N S   +        G + GS+     +    +T   +G S   +  EE
Sbjct: 738 QLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEE 797

Query: 672 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP 731
            I FT K + + YKGK L+ M G+DLS NK +G IPP++G L+ + ALN SHNNLTG IP
Sbjct: 798 VIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIP 857

Query: 732 VSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
            +FSNL Q+ES D+S+NNL+G IP +L E+  L VFSVAHNNLS 
Sbjct: 858 ATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSG 902

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 331/848 (39%), Positives = 459/848 (54%), Gaps = 87/848 (10%)

Query: 3   LVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVE 62
           ++  LLT++ E      GCLE+ER  LL +++    +  +L +W+D   +S CC+W+ ++
Sbjct: 5   MLLALLTLVGEWHGRCYGCLEEERVGLLEIQYLIDPNHVSLRDWMDI--NSSCCEWDWIK 62

Query: 63  CNTSTGRVKALYLSSKRQFLYSTAGQ--LNASLLTPFQQLETLHLDSNNIAGFVENGGLE 120
           C+ +T RV  L L  +R     + G   LNASL  PF++L++L L   ++ G +EN G E
Sbjct: 63  CDNTTRRVIQLSLGGERD---ESLGDWVLNASLFQPFKELQSLDLGMTSLVGCLENEGFE 119

Query: 121 RLSGLSKLKLLNLGRNLFNN--SIFSSLAG-LSSLRTLSLGYNRLKGSIDVKETLDNFTN 177
            LS  SKL+ L+L  N FNN  SI S   G LS+L++L L  N L        T  N + 
Sbjct: 120 VLS--SKLRNLDLSANGFNNDKSILSCFNGNLSTLKSLDLSANGLTAG---SGTFFNSST 174

Query: 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGN 237
           LE+L LD +SL I+ L++I A  +LK LS+    + G L    +G C L +L++L +  N
Sbjct: 175 LEELYLDNTSLRINFLQNIGALPALKVLSVAECDLHGTL--PAQGWCELKNLKQLDLARN 232

Query: 238 DLRGTLP-CL-----------YLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPF 285
           +  G+LP CL             NQ TGN +S PL +L S+E L LS N F++P S++PF
Sbjct: 233 NFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPF 292

Query: 286 FNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATF---PKFLYNQHDLE 342
            N S LK FS E N +  EP +  +  PKFQL    LS S         P FLY Q DL 
Sbjct: 293 LNHSSLKFFSSENNRLVTEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLR 352

Query: 343 LVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQG 402
            +D S +N+ G FP+WLLKNN  L  L L  N   G  Q    P+ ++  L +S N   G
Sbjct: 353 ALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSG 412

Query: 403 NIPLEIGVYFPSHLAM--------GC----------------------------FNLEYL 426
            I  +I + FP+   +        GC                              +  L
Sbjct: 413 QISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLTIPVL 472

Query: 427 VLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPK-SLSNCSRLEGLYMSDNNLYGNI 485
            LS NSL GQ+ +          L+L+ N F+G+I    L     L  L +S+N   G +
Sbjct: 473 KLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGML 532

Query: 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQV 545
           P    N + L  + ++ NH +GPIP +FC+L  L+ LDLSENN+SG +PSC S   +  V
Sbjct: 533 PRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHV 592

Query: 546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605
           HLSKN L GPL YG FFN S +VT+DL  NS +G+IP WI     L  L+L  N+ +GE+
Sbjct: 593 HLSKNRLSGPLTYG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGEL 651

Query: 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD----NVGSSAPTFNPNRRTTYF 661
           P QLC L+QL ++D+S N L G +P CL N +   +      ++G+S    +  +     
Sbjct: 652 PVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKT 711

Query: 662 VGPSILEK-------------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 708
           +GP +++              EE I F TK + + YKG  L+ M G+DLS N   G IP 
Sbjct: 712 MGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQ 771

Query: 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS 768
           + G L+ IR+LN SHNN T  IP +FSNL Q+ESLD+S+NNLNG IPPQL E+  L VFS
Sbjct: 772 EFGNLSEIRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFS 831

Query: 769 VAHNNLSA 776
           VAHNNLS 
Sbjct: 832 VAHNNLSG 839

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 342/901 (37%), Positives = 472/901 (52%), Gaps = 158/901 (17%)

Query: 22   LEQERSALLRLKHDFFN-DPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQ 80
            L +ER ALL LK  F + D  +L +W D+E  SDCC WE VEC+ +TGRV  L+L++ R+
Sbjct: 469  LYEERIALLELKAAFCSPDCSSLPSWEDEE--SDCCGWERVECSNTTGRVLKLFLNNTRE 526

Query: 81   F----LYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN 136
                 LY     LNASL  PF +L+ L+L +N +    ++ G ER   L+ L+LL+L  N
Sbjct: 527  SSQEDLY-----LNASLFIPFVELKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNN 581

Query: 137  LFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLE----------------- 179
              + SI +SL  LSSL++LSLG N L+GSI     L N   L+                 
Sbjct: 582  TLDISILASLTELSSLKSLSLGTNILEGSIQELAALHNLEELDLSKNDLESFITTTGLKS 641

Query: 180  -----DLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDE-------------- 220
                  L L+ +  +IS LKS+   + LK L +   +++G++   E              
Sbjct: 642  LRKLRVLHLETNDFNISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSS 701

Query: 221  ----------------------------------EGLCRLGHLQELHMGGNDLRGTL-PC 245
                                              +GLC+L +LQEL +  N   G++ PC
Sbjct: 702  TNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPC 761

Query: 246  -----------LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVF 294
                       L  N+ +GN+ SS    L  +E L LS+N FQ    +  F   SKL+V 
Sbjct: 762  LGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVL 821

Query: 295  S---GEFNEIYVEPESSHSTTPKFQLESVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSN 350
                G  N + +E E   +  P FQL+   LS   +   + P FL+ QHDL +VD S+S+
Sbjct: 822  DLICGN-NTLLLESE-DQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSS 879

Query: 351  LKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGV 410
            L+ +FP WL+KNN  L  L L+NNSL+G F  P +P+    A+ +S N  QG +P  I V
Sbjct: 880  LEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISV 939

Query: 411  YF----------------------------------------PSHLAMGCFNLEYLVLSE 430
                                                      P  LAMGC +LEYL+LS+
Sbjct: 940  SLPNLMFLNVSRNSFEGSIPSFGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSK 999

Query: 431  NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
            N LHGQ+F + + L  L  L LD N+F+G+IP  LSN S LE LY+S N++ G +P  +G
Sbjct: 1000 NDLHGQMFPRVSNLPSLRHLELDDNHFSGKIP-DLSNSSGLERLYVSHNSISGKLPGWIG 1058

Query: 491  NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
            N+S+L  ++M +N L+GPIP+EFC L+ LE+LDLS NN+SGSLPSC S S +  VHL +N
Sbjct: 1059 NMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQEN 1118

Query: 551  MLYGPLKYGTFFNRS-SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQL 609
             L GPL     F RS  + TLD+  N+ SG IP WI     L  L+L  N+ +G++P QL
Sbjct: 1119 HLTGPLTKA--FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQL 1176

Query: 610  CGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPS---- 665
            C L ++ ++DLS N+L G IP CL+         +   S  ++ P+   + ++  S    
Sbjct: 1177 CQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIE 1236

Query: 666  ----------ILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTN 715
                      I   +    FTTK  +  YKG  L  M G+DLS NKLTG IPP+IG L+ 
Sbjct: 1237 LSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQ 1296

Query: 716  IRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            + ALN SHN LTG IP +FS L  +ESLD+S+NNL G IP +L EL  L VFSVA+NNLS
Sbjct: 1297 VHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLS 1356

Query: 776  A 776
             
Sbjct: 1357 G 1357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 337/927 (36%), Positives = 472/927 (50%), Gaps = 158/927 (17%)

Query: 1   MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDF-FND---PFNLENWVDDENHSDCC 56
           +M VF LL + + GC   +GC+E+E+  LL  K     ND    F L +W+D+ N SDCC
Sbjct: 9   LMWVFILLLVQICGC---KGCIEEEKMGLLEFKAFLKLNDGHADFLLPSWIDN-NISDCC 64

Query: 57  KWEGVECNTSTGRVKALYLSSKRQ---------FLYSTAG--QLNASLLTPFQQLETLHL 105
            WE V CN +TGRVK L L+  RQ         + Y       LN SL  PF++L  L+L
Sbjct: 65  NWERVICNPTTGRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNL 124

Query: 106 DSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGS 165
            +N+  GF+EN G + LS L KL++L++  N F+ S   SL  ++SL+TL++    L GS
Sbjct: 125 SANSFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGS 184

Query: 166 IDVKETLDNFTNLEDLTLDYSSLH-------------------------ISILKSIAAFT 200
             ++E L +  NLE L L Y+ L                           S++KS+ A T
Sbjct: 185 FPIQE-LASSRNLEVLDLSYNDLESFQLVQGLLSLKKLEILAISGNEFDKSVIKSLGAIT 243

Query: 201 SLKRLSIQNGRVDGALGDDE---------------------------------------- 220
           SLK L +    ++G+    +                                        
Sbjct: 244 SLKTLVLCRIGLNGSFPIQDFASLSNLEILDLSYNSFSGILPSSIRLMSSLKSLSLAGNQ 303

Query: 221 -------EGLCRLGHLQELHMGGNDLRGTLP-CL-----------YLNQLTGNISSSPLI 261
                  +G C+L  LQEL +  N  +G LP CL             N  +GN+SSS L 
Sbjct: 304 LNGSLPNQGFCQLNKLQELDLNSNFFQGILPPCLNNLTSLRLLDLSHNLFSGNVSSSLLP 363

Query: 262 HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVF--SGEFNEIYVEPESSHSTTPKFQLES 319
            LTS+E + LSYN F+ PFS   F N S L+V     + N+  +E E      P FQL+ 
Sbjct: 364 SLTSLEYIDLSYNLFEGPFSFNSFANHSNLQVVIHGSDNNKFEIETEYPVGWVPLFQLKV 423

Query: 320 VSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGP 379
           + LS   +   FP FL  Q  L +VD S +NL G FPNWLL+NN  L  LVLRNNSL G 
Sbjct: 424 LVLSNYKLIGDFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLENNTRLEYLVLRNNSLMGQ 483

Query: 380 FQTPIQPHWHLDALHVSKNF-------------------------FQGNIP---LEIGVY 411
              P++P+  + +L +S N                          F+G +P    E+   
Sbjct: 484 L-LPLRPNSRITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEMSSL 542

Query: 412 FPSHLAMGCF------------NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG 459
           +   L+   F            +LE+L LS N  HG++FS+   L  L  LHLD N F G
Sbjct: 543 WSLDLSANSFSGEVPKQLLVAKDLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNNQFKG 602

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519
            +   +S  S L  L +S+NN+ G IP+ +GN++ L  +++ +N  +G +P E  QL  L
Sbjct: 603 TLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQLQRL 662

Query: 520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579
           E LD+S+N +SGSLPS  S   ++ +HL  NM  G L    F N S+++TLD+  N   G
Sbjct: 663 EFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTG-LIPRDFLNSSNLLTLDIRDNRLFG 721

Query: 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLH 639
           +IP  I RL+ LR  +L  N L G +PNQLC L ++ L+DLSNNN  G IP C  +    
Sbjct: 722 SIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFGHIQFG 781

Query: 640 NNGDNVGSSAPTFNPNR----------RTTYFVGPSILEKEESIMFTTKEISFSYKGKPL 689
           +         P FNP            +  +F   +  ++ + + F TK  S SY G  L
Sbjct: 782 DFKTEHNVYKPMFNPYSFFSIYTGYLVKYLFFSTEAHRDEVDEVEFVTKNRSNSYGGGIL 841

Query: 690 NKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNN 749
           + M G+DLSCN LTGEIP ++G L++I ALN SHN L G +P SFS L+Q+ESLD+S+N 
Sbjct: 842 DFMSGLDLSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPKSFSKLSQIESLDLSYNK 901

Query: 750 LNGKIPPQLVELNALVVFSVAHNNLSA 776
           L+G+IPP+ + LN L VF+VAHNN+S 
Sbjct: 902 LSGEIPPEFIGLNFLEVFNVAHNNISG 928

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 322/807 (39%), Positives = 430/807 (53%), Gaps = 117/807 (14%)

Query: 7   LLTIILEGCWGTEGCLEQERSALLRLK--HDFFNDPFNLENWVDDENHSDCCKWEGVECN 64
           ++ I ++G W ++GCLE ER+AL+++K   ++ N  F L +W     + DCC W  V CN
Sbjct: 3   IIFIDIQGKWRSDGCLEVERNALMQIKPFFNYHNGNF-LSSW---GFYDDCCNWNKVVCN 58

Query: 65  TSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSG 124
           T TGRV AL L   R    S    LNASL  PFQ+L+ L +  NNIAG +EN G ERLS 
Sbjct: 59  TITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGCIENEGFERLST 118

Query: 125 LSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKE-----TLDN----- 174
           L  L++LNLG N FNN+I S  +  SSL++L +  N+LKG ++V+E     +L+      
Sbjct: 119 LENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVEELNYLTSLEELKMAG 178

Query: 175 --------------FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDE 220
                         F NL+ L LD S+L+ S L+SI   TSLK LS+    + G +    
Sbjct: 179 NQIEGFQSLNGFPVFRNLQHLYLDSSTLNNSFLQSIGTLTSLKALSLSKCGLTGTI-PST 237

Query: 221 EGLCRLGHLQELHMGGNDLRGTLP------------CLYLNQLTGNISSSPLIHLTSIER 268
           +GLC L HL+ L +  N L G LP             L  N   GNIS SPL  LTSI  
Sbjct: 238 QGLCELKHLECLDISFNSLSGNLPWCLANLTSLQQLVLSWNHFNGNISLSPLSSLTSIYD 297

Query: 269 LFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIH 328
           L LS+N FQI  SL PF NLSKL  FSG  N IY E E      PKFQL+ + LSG    
Sbjct: 298 LKLSHNMFQISISLNPFVNLSKLTHFSGWSNIIYAETEV-EDMIPKFQLKMLYLSGDGYG 356

Query: 329 ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW 388
             FPKFLY+Q+DLE+++ S+   + +FP WLL NN NL  L L NNSLS P Q PI  H 
Sbjct: 357 GVFPKFLYHQYDLEMIELSNIKFREKFPYWLLDNNTNLEELYLANNSLSEPLQLPIHSHT 416

Query: 389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL-FSKKNYLRKL 447
           +L A  +S                                 +NS HG++      Y   L
Sbjct: 417 NLSASDIS---------------------------------DNSFHGRIPIQIGAYFPSL 443

Query: 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG 507
             L +  + F G IP S+ N S L  L  S+N   GNIP  +GN+ SL            
Sbjct: 444 TELKMSTSGFHGSIPNSIGNMSSLTYLDFSNNQFSGNIPNSIGNMPSL------------ 491

Query: 508 PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSI 567
                        +L L++N++SGSLPS  S S+I ++HLS+N + G L++  F     +
Sbjct: 492 ------------YVLALTDNDVSGSLPSNFSLSSISEIHLSRNRIQGSLEHAFFRGSDLL 539

Query: 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627
           + LDLS+N  +G+IP WI  L +L YLIL+NNN EGE+  QL  L  L ++DLS+N L G
Sbjct: 540 IVLDLSHNHMTGSIPSWIGGLPQLGYLILSNNNFEGEISIQLRKLNYLSVVDLSHNKLTG 599

Query: 628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGK 687
            I  CL  +S               NP+R     V       E  +    K +S SY+G 
Sbjct: 600 PIHPCLKCSS---------------NPDRIFHTGVNDLSSNMEGHLELIMKSLSLSYEGM 644

Query: 688 PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
               + G+D SCN  TG IP + G L+ I+ LN SHN+L G I  +F NL+Q+ESLD+S+
Sbjct: 645 IATYISGIDFSCNNFTGSIPHEFGNLSEIKLLNLSHNSLIGSILTTFFNLSQIESLDLSN 704

Query: 748 NNLNGKIPPQLVELNALVVFSVAHNNL 774
           N L G IP +L +L +L  F+V++NNL
Sbjct: 705 NKLQGSIPLELTKLYSLAAFNVSYNNL 731

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124000|ref|XP_002330262.1| predicted protein [Populus trichocarpa] gi|222871718|gb|EEF08849.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 322/850 (37%), Positives = 453/850 (53%), Gaps = 104/850 (12%)

Query: 1   MMLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEG 60
           M+LV  LLT++ + C  + GCL++ER  LL +K     +  +L +WV+  N   CC+W  
Sbjct: 5   MLLV--LLTLVGDWCGRSYGCLKEERIGLLEIKALIDPNHLSLGHWVESSN---CCEWPR 59

Query: 61  VECNTSTGRVKALYLSSKRQFLYS----------TAGQLNASLLTP---FQQLETLHLDS 107
           +EC+ +T RV  + LS   Q L S          T  +LN  +L+    F  L++L+L +
Sbjct: 60  IECDNTTRRV--IQLSFGFQVLASGLRNLEELDLTHNKLNDIILSSLGGFSTLKSLYLSN 117

Query: 108 NNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSID 167
           N   G   + GL  LS  S L+ + L  +    S   ++  LS+L+ LSL       ++ 
Sbjct: 118 NRFTG---STGLNGLSNSSSLEEVFLDDSFLPASFLRNIGPLSTLKVLSLTGVDFSSTLP 174

Query: 168 VKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLG 227
            + T  N + LE+L LD +SL ++ L++I    +LK LS+    ++  L    +G C L 
Sbjct: 175 AEGTFFNSSTLEELHLDRTSLPLNFLQNIGTLPTLKVLSVGQCDLNDTL--PAQGWCELK 232

Query: 228 HLQELHMGGNDLRGTLP-CL-----------YLNQLTGNISSSPLIHLTSIERLFLSYNQ 275
           +L++L + GN+  G+LP CL             NQ TGNI+S  L +L SIE L LS N 
Sbjct: 233 NLEQLDLSGNNFGGSLPDCLGNLSSLQLLDVSNNQFTGNIASGSLTNLISIESLSLSNNL 292

Query: 276 FQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGS----DIHATF 331
           F++P S++PF N S LK F  + N++  EP S H   PKFQL    LS S     ++   
Sbjct: 293 FEVPISMKPFMNHSSLKFFYSKNNKLVTEPMSFHDFIPKFQLVFFRLSNSPTSEAVNIEI 352

Query: 332 PKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLD 391
           P FLY+Q+DL ++D S +N+ G FP+WLLKNN  L  L+L  NS  G  Q    P+ H+ 
Sbjct: 353 PNFLYSQYDLRVLDLSHNNITGMFPSWLLKNNTQLEQLLLNENSFVGTLQLQDHPNPHMT 412

Query: 392 ALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---------------- 435
            L +S N   G I     + FP        NL  L ++EN   G                
Sbjct: 413 ELDISNNNMHGQILKNSCLIFP--------NLWILRMAENGFTGCIPSCLGNNLSMAILD 464

Query: 436 ----QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI------ 485
               QL + K    ++  L L  N   G+IP S+ N S    LY+S NN +G I      
Sbjct: 465 LSNNQLSTVKLEQPRIWSLQLSNNNLGGQIPISIFNSSGSLFLYLSGNNFWGQIQDFPSP 524

Query: 486 -------------------PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE 526
                              P    N + +    ++ N   GPI  +FC+L+ LE LDLSE
Sbjct: 525 SWEIWVELDLSNNQFSGMLPRCFVNSTQMFTFDLSKNQFNGPITEDFCKLDQLEYLDLSE 584

Query: 527 NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE 586
           NN+SG +PSC S   I QVHLSKN L GPL  G F+N SS++T+DL  N+F+G+IP WI 
Sbjct: 585 NNLSGFIPSCFSPPQITQVHLSKNRLSGPLTNG-FYNSSSLITIDLRDNNFTGSIPNWIG 643

Query: 587 RLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646
            L  L  L+L  N+ +GE P  LC L++L+ +D+S N+L G +P CL N +   +   V 
Sbjct: 644 NLSSLSVLLLRANHFDGEFPAHLCWLEKLKFLDVSQNHLSGPLPSCLGNLTFKESSALVD 703

Query: 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 706
                 NP     Y+        +E I F TK + +SY+G+ L+ M G+DLS N   G I
Sbjct: 704 RLQFLRNPFWH--YYT-------DEVIEFKTKNMYYSYQGEILDLMSGIDLSSNNFLGAI 754

Query: 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVV 766
           P ++G L+ I ALN SHNNL G IP +FSNL Q+ESLDVSHNNLNG+IP QL+EL  L V
Sbjct: 755 PQELGSLSEIHALNLSHNNLAGSIPATFSNLKQIESLDVSHNNLNGRIPAQLIELTFLEV 814

Query: 767 FSVAHNNLSA 776
           F+V++NNLS 
Sbjct: 815 FNVSYNNLSG 824

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 335/901 (37%), Positives = 453/901 (50%), Gaps = 177/901 (19%)

Query: 3   LVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVE 62
           ++  LLT+I E      GCLE+ER                               W  +E
Sbjct: 5   MLLALLTLIGEWSGRCYGCLEEER-------------------------------WPRIE 33

Query: 63  CNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERL 122
           C+ +T RV  L L   R F       LNASL  PF++L++L L  N + G +EN G + L
Sbjct: 34  CDNTTKRVIQLSLFDARDFRLGDW-VLNASLFLPFKELQSLDLGYNGLVGCLENEGFQVL 92

Query: 123 SGLSKLKLLNLGRNLFNN---------------------------------SIFSSLAGL 149
           S  SKL+ L L  N FNN                                 +IF +L G 
Sbjct: 93  S--SKLRELGLSDNRFNNDKSILSCFNGLKVLSSRLKKLENLDLSGNQCNDTIFPALTGF 150

Query: 150 SSLRTLSLGYNRLKGS----------------IDVKET------LDNFTNLEDLTLDYSS 187
           SSL++L L  N+L  S                + +K+T        N + LE+L LD +S
Sbjct: 151 SSLKSLDLSGNQLTASGLRKLDFLQSLRSLKTLSLKDTNLSQGTFFNSSTLEELHLDNTS 210

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CL 246
           L I+ L++  A  +LK LS+    + G L    +G C L +L++L +  N+  G LP CL
Sbjct: 211 LPINFLQNTRALPALKVLSVGECDLHGTL--PAQGWCELKNLKQLDLARNNFGGALPDCL 268

Query: 247 -----------YLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFS 295
                        NQ TGNI S PL +L S+E L LS N F++P S++PF N S LK FS
Sbjct: 269 GNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFS 328

Query: 296 GEFNEIYVEPESSHSTTPKFQLESVSL--SGSDIHATFPKFLYNQHDLELVDFSDSNLKG 353
            E N +  EP +  +  PKFQL  +SL  +   ++   P FLY Q+DL ++D S +N+ G
Sbjct: 329 SENNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITG 388

Query: 354 EFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFP 413
            FP+WLLKNN  +  L L +NS  G  Q P  P+ ++  L +S N     IP +I +  P
Sbjct: 389 MFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILP 448

Query: 414 SHLAM--------GCF--------NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYF 457
           +  ++        GC         +L  L LS N L      K   L  L  L L  N  
Sbjct: 449 NLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLST---VKLELLTTLMFLKLSNNNL 505

Query: 458 TGEIPKSLSNCSRLEGLYMSDNNLYGNI-------------------------PARLGNL 492
            G+IP S+ N S LE LY++ NN  G I                         P    N 
Sbjct: 506 GGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNS 565

Query: 493 SSLNDIMMASNHLQGPIPLEF-CQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM 551
           + L  I ++ NH +GPIP +F C+ ++LE LDLSENN+SG +PSC S   I  +HLSKN 
Sbjct: 566 TVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNR 625

Query: 552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCG 611
           L GPL YG F+N SS+VT+DL  NSF+ +IP WI  L  L  L+L  N+ +         
Sbjct: 626 LSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD--------- 675

Query: 612 LKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNR--RTTYF--VGPSIL 667
            +QL ++D+S N L G +P CL N +   +          F+ +R    TY+  +GP ++
Sbjct: 676 -EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIEKTYYETMGPPLV 734

Query: 668 EK------------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTN 715
           +             EE I FTTK++S+ YKGK LN M G+DLS N   G IPP+ G L+ 
Sbjct: 735 DSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSE 794

Query: 716 IRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
           I +LN SHNNLTG IP +FSNL Q+ESLD+S+NNLNG IPPQL E+  L VFSVAHNNLS
Sbjct: 795 ILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLS 854

Query: 776 A 776
            
Sbjct: 855 G 855

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	829
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.890	0.812	0.319	7.1e-77
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.809	0.695	0.265	3.9e-47
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.880	0.780	0.284	3.3e-65
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.728	0.604	0.304	7.4e-63
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.729	0.679	0.299	8e-62
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.722	0.553	0.301	3.3e-57
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.731	0.620	0.306	7.1e-57
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.732	0.748	0.285	2e-45
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.885	0.587	0.279	2.6e-52
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.726	0.529	0.304	2.4e-49

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 259/811 (31%), Positives = 375/811 (46%)

Query:    10 IILEGCWGTEGCLEQERSALLRLKHDFFND----PFN--LENWVDDENHSDCCKWEGVEC 63
             ++L    G   C+E+ER ALL LK    +      ++  L  W +D   SDCC+WE ++C
Sbjct:     2 LLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK-SDCCQWENIKC 60

Query:    64 NTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENXXXXXXX 123
             N ++ R+  L L +     Y     LN SLL PF+++ +L L ++ + G V++       
Sbjct:    61 NRTSRRLTGLSLYTS---YYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSL 117

Query:   124 XXXXXXXXXXXXXX-FNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
                            FNNSIF  L   +SL TLSL  N + G I +KE L N TNLE   
Sbjct:   118 RRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKE-LKNLTNLE--L 174

Query:   183 LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDE-EGLCRLGHLQELHMGGNDLRG 241
             LD S   I     +  F  LK+L   +   +G     E +  C + +LQEL + G +  G
Sbjct:   175 LDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVG 234

Query:   242 TLP-CL-------YL----NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLS 289
              LP C        +L    NQLTGNI  S    L S+E L LS N F+  FSL P  NL+
Sbjct:   235 QLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLT 293

Query:   290 KLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDS 349
             KLKVF     +  V+ +   +  P FQL  + L    +    P FL  Q +L +VD S +
Sbjct:   294 KLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEK-IPNFLMYQKNLHVVDLSGN 352

Query:   350 NLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIG 409
              + G  P WLL+NNP L  L L+NNS +  FQ P   H +L  L  S+N   G  P   G
Sbjct:   353 RISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVH-NLQVLDFSENNIGGLFPDNFG 410

Query:   410 VYFPS--HL-------------AMG-CFNLEYLVLSENSLHGQL-FSKKNYLRKLARLHL 452
                P+  H+             +MG  +N+ +L LS N+L G+L  S  +    L+ L L
Sbjct:   411 RVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQL 470

Query:   453 DANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLE 512
               N F+G      +N + L  L +++N   G I   L  L  L  + M++N L+G +P  
Sbjct:   471 SHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPL 530

Query:   513 FCQLNYLEILDLSENNISGSLPSCSSHSTIQQV-HLSKNMLYGPLKYGTFFNRSSIVTLD 571
                  YL  LDLS N +SG+LPS   H ++  V  L  N   GP+   TF    SI  LD
Sbjct:   531 LLVFEYLNFLDLSGNLLSGALPS---HVSLDNVLFLHNNNFTGPIP-DTFLG--SIQILD 584

Query:   572 LSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG 631
             L  N  SGNIP +                  G +P+ LC   ++RL+DLS+N L G IP 
Sbjct:   585 LRNNKLSGNIPQFVDTQDISFLLLRGNSLT-GYIPSTLCEFSKMRLLDLSDNKLNGFIPS 643

Query:   632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSI----LEKEESIMFTTKEISFSYKGK 687
             C +N S        G +         T Y+V  ++    L   +S  F  +     Y   
Sbjct:   644 CFNNLSF-------GLA----RKEEITNYYVAVALESFYLGFYKST-FVVENFRLDYSNY 691

Query:   688 -PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
               ++  +      +   G      G L ++  L+ S N L+GVIP    +L ++ +L++S
Sbjct:   692 FEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLS 751

Query:   747 HNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777
             HN L+  IP    +L  +    +++N L  +
Sbjct:   752 HNFLSSHIPDSFSKLQDIESLDLSYNMLQGS 782

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 198/747 (26%), Positives = 325/747 (43%)

Query:    71 KALYLSSKRQFLYSTAGQLNASL---LTPFQQLETLHLDSNNIAGFVENXXXXXXXXXXX 127
             K+L    K + L   + + N S+   L+    L TL L SNN+ G   +           
Sbjct:   126 KSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDG---SFPAKELRDLTN 182

Query:   128 XXXXXXXXXXFNNSI-FSSLAGLSSLRTLSLGYNRLKGSID------------VKETLDN 174
                       FN SI    L+ L  L+ L L  N   GS++            ++  +  
Sbjct:   183 LELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICE 242

Query:   175 FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHM 234
               N+++L L  + L   +   + + T L+ L + + ++ G +      L  L  L+ L +
Sbjct:   243 LNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTV---PSSLGSLQSLEYLSL 299

Query:   235 GGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFF----NLSK 290
               ND  G+     L  L+ N+    L   +S  ++ LS + ++  F L        N+ K
Sbjct:   300 FDNDFEGSFSFGSLANLS-NLMVLKLCSKSSSLQV-LSESSWKPKFQLSVIALRSCNMEK 357

Query:   291 LKVF---SGEFNEIYVEPESSHSTTPKFQLES-----VSLSGSDIHATF--PKFLYNQHD 340
             +  F     +   + +   +     P + L +     V L  +++  +F  PK   + H+
Sbjct:   358 VPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPK---SAHN 414

Query:   341 LELVDFSDSNLKGEFPN---WLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSK 397
             L  +D S ++    FP    W+    P+L  L    N+      + +     +  + +S+
Sbjct:   415 LLFLDVSANDFNHLFPENIGWIF---PHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSR 471

Query:   398 NFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYF 457
             N F GN+P             GC+++  L LS N L G++F +      +  L +D N F
Sbjct:   472 NSFHGNLPRSF--------VNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLF 523

Query:   458 TGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN 517
             TG+I + L +   LE L MS+NNL G IP+ +G L SL  ++++ N L+G IP+     +
Sbjct:   524 TGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKS 583

Query:   518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
              L++LDLS N++SG +P          + L  N L G +   T    +++  LDL  N F
Sbjct:   584 SLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIP-DTLL--ANVEILDLRNNRF 640

Query:   578 SGNIPYWXXXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
             SG IP +                  G++P+QLCGL  ++L+DLSNN L G IP CL NTS
Sbjct:   641 SGKIPEFINIQNISILLLRGNNFT-GQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTS 699

Query:   638 LHNNGDNVGSSAPTFNPNRRTTYFVGPSILE-----KEESIMF----TTKEISFSYKGKP 688
                 G    S    F  +  +  F G S+ +     K   I F    T   +S  YK   
Sbjct:   700 F-GFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAAT 758

Query:   689 LNKM-YGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
               K+ +      +   G      G L  +  ++ S N L+G IPV F  L ++ +L++SH
Sbjct:   759 QTKIEFATKHRYDAYMG------GNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSH 812

Query:   748 NNLNGKIPPQLVELNALVVFSVAHNNL 774
             NNL+G IP  +  +  +  F ++ N L
Sbjct:   813 NNLSGVIPKSISSMEKMESFDLSFNRL 839

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 230/809 (28%), Positives = 347/809 (42%)

Query:    12 LEGCWGTEGCLEQERSALLRLKHDFFNDP------FNLENWVDDENHSDCCKWEGVECNT 65
             L GC     C+E+ER ALL LK    +        + L  W +D   SDCC+W+G++CN 
Sbjct:     7 LHGC---TSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK-SDCCQWDGIKCNR 62

Query:    66 STGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDS---NNIAGFVENXXXXXX 122
             ++GRV  L   S     +  +  LN SLL PF+++ +L+L +   N   GF ++      
Sbjct:    63 TSGRVIEL---SVGDMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRS 119

Query:   123 XXXXXXXXXXXXXXX-FNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDL 181
                             FN S F  L   +SL TL L YN + G   +K  L + TNLE L
Sbjct:   120 LSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKG-LKDLTNLELL 178

Query:   182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241
              L  + L+ S ++ +     LK L + + +   ++   E  L  L +L+ L +  N + G
Sbjct:   179 DLRANKLNGS-MQELIHLKKLKALDLSSNKFSSSMELQE--LQNLINLEVLGLAQNHVDG 235

Query:   242 TLP----CLYLN----QLTGN--ISSSPLI--HLTSIERLFLSYNQFQ--IPFSLEPFFN 287
              +P    C   N     L GN  +   PL    L  +  L LS NQ    +P S     +
Sbjct:   236 PIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLES 295

Query:   288 LSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFS 347
             L  L +    F+  +     ++ T  KF    V L    +    P FL  Q  L LVD S
Sbjct:   296 LEYLSLSDNNFDGSFSLNPLTNLTNLKFV---VVLRFCSLEK-IPSFLLYQKKLRLVDLS 351

Query:   348 DSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLE 407
              +NL G  P WLL NNP L  L L+NNS +  F  P   H +L     S N         
Sbjct:   352 SNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVH-NLQIFDFSAN--------N 401

Query:   408 IGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS-LS 466
             IG  FP  +     NL  L  S N   G   +    ++ ++ L L  N F+G++P+S ++
Sbjct:   402 IGK-FPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVT 460

Query:   467 NCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE 526
              C  +  L +S N   G    R  N  SL+ + M +N   G I         L ILD+S 
Sbjct:   461 GCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSN 520

Query:   527 NNISGSLPS-CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWX 585
             N +SG++P        +  V +S N L G +   +      +  LDLS N FSG +P   
Sbjct:   521 NGLSGAIPRWLFEFPYLDYVLISNNFLEGTIP-PSLLGMPFLSFLDLSGNQFSGALPSHV 579

Query:   586 XXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN---NG 642
                              G +P+ L  LK ++++DL NN L G IP   D  S++     G
Sbjct:   580 DSELGIYMFLHNNNFT-GPIPDTL--LKSVQILDLRNNKLSGSIPQFDDTQSINILLLKG 636

Query:   643 DNVGSSAPT----------FNPNRRTTYFVGPSILEK------EESIMFTTKEISFSYKG 686
             +N+  S P            + +      V PS L        +E  M      SF    
Sbjct:   637 NNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTS 696

Query:   687 KPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR-ALNFSHNNLTGVIPVSFSNLNQVESLDV 745
               + ++Y      +K+  E+     + T I+ A    +++ +G    S   L  +  +D+
Sbjct:   697 LEM-ELYKSTFLVDKI--EVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDL 753

Query:   746 SHNNLNGKIPPQLVELNALVVFSVAHNNL 774
             S+N L+G IP +L +L  L   +++HN+L
Sbjct:   754 SNNELSGVIPTELGDLLKLRTLNLSHNSL 782

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 7.4e-63, P = 7.4e-63
 Identities = 205/674 (30%), Positives = 320/674 (47%)

Query:   145 SLAGLSSLRTLSLGYNRLKGSIDVK------ETLDN---FTNLEDLTLDYSSLHISILKS 195
             +L  L  L+ L L  N    S++++      + L     + N+E+L L  + L       
Sbjct:   218 ALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLC 277

Query:   196 IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNI 255
             + + T L+ L + + ++ G +      L  L  L+ L + GN+  G     +   L  N+
Sbjct:   278 LTSLTGLRVLDLSSNQLTGNV---PSALANLESLEYLSLFGNNFEG----FFSLGLLANL 330

Query:   256 SSSPLIHL----TSIERLF-LSYN-QFQIPFSLEPFFNLSKLKVF---SGEFNEIYVEPE 306
             S   ++ L     S+E  F  S+  +FQ+        NL K+  F     + + + +   
Sbjct:   331 SKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDN 390

Query:   307 SSHSTTPKFQLES-----VSLSGSDIHATF--PKFLYNQHDLELVDFSDSNLKGEF-PN- 357
               H   P + LE+     V L  ++   +F  PK   + H+L  ++ S +     F  N 
Sbjct:   391 QIHGNFPSWLLENNTKLEVLLLQNNSFTSFQLPK---SAHNLLFLNVSVNKFNHLFLQNF 447

Query:   358 -WLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL 416
              W+L   P+L  + L  N   G   + +     ++ L +S N F G +P           
Sbjct:   448 GWIL---PHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLP--------RRF 496

Query:   417 AMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYM 476
               GC+NL  L LS N L G++F +     +L  + +D N FTG I K   +   L  L +
Sbjct:   497 LKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDI 556

Query:   477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS- 535
             S+N L G IP+ +G    L  + +++N L+G IP     ++YL++LDLS N +SG +P  
Sbjct:   557 SNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPH 616

Query:   536 CSS--HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXX 593
              SS  H  +  + L  N L G +      N   ++ LDL  N  SGN+P +         
Sbjct:   617 VSSIYHGAV--LLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEFINTQNISIL 671

Query:   594 XXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS--LHNNGDNVGSSAPT 651
                      G++P+Q C L  ++L+DLSNN   G IP CL NTS  L    D+     P+
Sbjct:   672 LLRGNNFT-GQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPS 730

Query:   652 -FNPNRRTTYFVGPSILEK---------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701
              F   +   YF    ++++         +  I F TK    +Y G  L  ++G+DLS N+
Sbjct:   731 RFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENE 790

Query:   702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761
             L+GEIP ++G L  + ALN SHNNL+GVI  SFS L  VESLD+S N L G IP QL ++
Sbjct:   791 LSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDM 850

Query:   762 NALVVFSVAHNNLS 775
              +L VF+V++NNLS
Sbjct:   851 ISLAVFNVSYNNLS 864

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 8.0e-62, P = 8.0e-62
 Identities = 199/664 (29%), Positives = 320/664 (48%)

Query:   146 LAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRL 205
             L  L +LR L L  N+  GS+  K+ +     L++L L  +     I    + F+ L+ L
Sbjct:   149 LTNLRNLRALDLSNNKFSGSLQ-KQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVL 207

Query:   206 SIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTG----NISS-SPL 260
              + +  + G +      +     ++ L +  ND  G      + +LT      +SS S +
Sbjct:   208 DLSSNHLSGKI---PYFISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGM 264

Query:   261 IHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKF----- 315
             + +  +E       Q Q+   +    NL K+  F     E+ V   S++  +  F     
Sbjct:   265 LQI--VETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLL 322

Query:   316 ----QLESVSLSGSDIHA-TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLV 370
                 +L+++ L  +     T P+ +     L+++D S +N   + P  +     +L  L 
Sbjct:   323 ENNTELQALLLQNNSFKTLTLPRTMRR---LQILDLSVNNFNNQLPKDVGLILASLRHLN 379

Query:   371 LRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
             L NN   G   + +    +++ + +S N F G +P         +L  GC++L +L LS 
Sbjct:   380 LSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLP--------RNLFTGCYSLSWLKLSH 431

Query:   431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
             N   G +  K +    L  L +D N FTG+IP++L N   L  + +S+N L G IP  LG
Sbjct:   432 NRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLG 491

Query:   491 NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLS 548
             N   L  + +++N LQG IP     + YL +LDLS N +SGSLP  S S +  I  +H  
Sbjct:   492 NFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLH-- 548

Query:   549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEGEVPNQ 608
              N L G +    ++    +  LDL  N  SGNIP +                  G++P +
Sbjct:   549 NNNLTGSIPDTLWYG---LRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLT-GKIPVE 604

Query:   609 LCGLKQLRLIDLSNNNLFGQIPGCLDNTSL----HNNGDN---VGSSAPTFNPNRRTTYF 661
             LCGL  +R++D ++N L   IP C+ N S     H+N D+     S    F       Y+
Sbjct:   605 LCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYY 664

Query:   662 VGPSILEK---EESIMFTTKEISFSYKGK-------PLNKMYGVDLSCNKLTGEIPPQIG 711
                 + ++   + S+ F   ++ F+ K +        LN+M+G+DLS N+L+G IP ++G
Sbjct:   665 ESLIVSDRFSLDYSVDFNV-QVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELG 723

Query:   712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAH 771
              L  +R+LN S N+L+G IP SFSNL  +ESLD+S N L+G IP QL  L +LVVF+V++
Sbjct:   724 DLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSY 783

Query:   772 NNLS 775
             NNLS
Sbjct:   784 NNLS 787

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 3.3e-57, P = 3.3e-57
 Identities = 197/653 (30%), Positives = 306/653 (46%)

Query:   143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTS- 201
             +  +  L  LR L L  N L     +   L N T+L  L L  + L+ ++   ++   S 
Sbjct:   351 YLGICRLMKLRELDLSSNALTS---LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSV 407

Query:   202 LKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI 261
             L+ LS+ +   DG+   +   L     L    +      G +      Q+    S +PL 
Sbjct:   408 LEYLSLLDNNFDGSFLFNS--LVNQTRLTVFKLSSKV--GVI------QVQTESSWAPLF 457

Query:   262 HLTSIERLFLSYNQFQIPFSLEP----FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQL 317
              L  +     S     + F +      F +LS  K+ +G F    V+    ++T    +L
Sbjct:   458 QLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKL-TGTFPTWLVK----NNT----RL 508

Query:   318 ESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
             +++ LSG+ +       L   H L+++D S + +       +    PNL  +   +N   
Sbjct:   509 QTILLSGNSLTKLQLPILV--HGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQ 566

Query:   378 GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL 437
             G   + I     L  L +S N   G +P    + F S    GC++L  L LS N L G++
Sbjct:   567 GTIPSSIGEMKSLQVLDMSSNGLYGQLP----IMFLS----GCYSLRVLKLSNNQLQGKI 618

Query:   438 FSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLND 497
             FSK   L  L  L LD N FTG + + L     L  L +SDN   G +P  +G +S L+ 
Sbjct:   619 FSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSY 678

Query:   498 IMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLK 557
             + M+ N L+GP P    Q  ++E++D+S N+ SGS+P   +  +++++ L  N   G L 
Sbjct:   679 LYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTG-LV 736

Query:   558 YGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRL 617
              G  F  + +  LDL  N+FSG I                    +  +P ++C L ++ L
Sbjct:   737 PGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGL 796

Query:   618 IDLSNNNLFGQIPGCLDNTSLH-NNGDNVGS-------SAPTFNPN-RRTTYF-----VG 663
             +DLS+N   G IP C    S      D   S       S  TF P+ +  ++      V 
Sbjct:   797 LDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVR 856

Query:   664 PSILEKEESIM-FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFS 722
                  K  +++ F TK    +Y+G  L  M+G+DLS N+L+GEIP +IG L NIR+LN S
Sbjct:   857 NGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLS 916

Query:   723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
              N LTG IP S S L  +ESLD+S+N L+G IPP L +LN+L   ++++NNLS
Sbjct:   917 SNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLS 969

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 7.1e-57, P = 7.1e-57
 Identities = 201/656 (30%), Positives = 307/656 (46%)

Query:   149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQ 208
             L++L  L L +N L G I  KE      NL  L L  +     +   +     L+ L + 
Sbjct:   234 LTNLEVLGLAWNHLDGPIP-KEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLS 292

Query:   209 NGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIER 268
             + ++ G L         L  L+ L +  N+  G      LN L  N++   +  L+S   
Sbjct:   293 SNQLSGNL---PASFNSLESLEYLSLSDNNFEGFFS---LNPLA-NLTKLKVFRLSSTSE 345

Query:   269 LF---LSYN---QFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTT---PKFQLES 319
             +       N   +FQ+  +  PF +L K+  F      + +   SS+  +   P + LE+
Sbjct:   346 MLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLEN 405

Query:   320 -VSLSGSDI-HATFPKFLYNQ--HDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
                L    + + +F  F      H L+++DFS +++ G  P+ +    P L  +   +N 
Sbjct:   406 NPELKVLQLKNNSFTIFQIPTIVHKLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNG 465

Query:   376 LSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG 435
               G   + +     +  L +S N F G +P          L  GCF+L  L LS NS  G
Sbjct:   466 FQGNLPSSMGEMNDISFLDLSYNNFSGELPRS--------LLTGCFSLITLQLSHNSFSG 517

Query:   436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSS- 494
              +   +  L  L  L +  N FTGEI   L     L     S+N L G I + +   SS 
Sbjct:   518 PILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSH 577

Query:   495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ-QVHLSKNMLY 553
             L  +++++N L+G +P     +++L  LDLS N +SG LPS   +S    ++ L  N   
Sbjct:   578 LIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFT 637

Query:   554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEGEVPNQLCGLK 613
             GPL   T    + I  LDL  N  SG+IP +                  G +P +LC L 
Sbjct:   638 GPLPV-TLLENAYI--LDLRNNKLSGSIPQFVNTGKMITLLLRGNNLT-GSIPRKLCDLT 693

Query:   614 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG----SSAPTFNPNR-----RTTYFVGP 664
              +RL+DLS+N L G IP CL++ S    G+ +G    S   +F  +      R+T+ V  
Sbjct:   694 SIRLLDLSDNKLNGVIPPCLNHLSTEL-GEGIGLSGFSQEISFGDSLQMEFYRSTFLVDE 752

Query:   665 SILEKEESIM-----FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRAL 719
              +L  + + M     F  K+   S+ G  L+ MYG+DLS N+L+G IP ++G L+ +RAL
Sbjct:   753 FMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRAL 812

Query:   720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
             N S N L+  IP +FS L  +ESLD+S+N L G IP QL  L +L VF+V+ NNLS
Sbjct:   813 NLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLS 868

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 2.0e-45, P = 2.0e-45
 Identities = 189/662 (28%), Positives = 305/662 (46%)

Query:   139 NNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAA 198
             ++SI   +  ++SL  L + +N ++G I     + N T+L  L +  +  + SI   + +
Sbjct:    94 SSSILRPILRINSLVGLDVSFNNIQGEIPGYAFV-NLTSLISLDMCCNRFNGSIPHELFS 152

Query:   199 FTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC----------LYL 248
              T+L+RL +    + G L  D   +  L +LQEL +  N + G +P           L L
Sbjct:   153 LTNLQRLDLSRNVIGGTLSGD---IKELKNLQELILDENLIGGAIPSEIGSLVELLTLTL 209

Query:   249 NQLTGNIS-SSPLIHLTSIERLFLSYN--QFQIPFSLEPFFNLSKLKVFSGEFNEIYVEP 305
              Q   N S  S +  LT ++ + L  N    +IP  +    NLS L +   + +     P
Sbjct:   210 RQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGI--P 267

Query:   306 ESSHSTTPKFQLESVSLSGSD-IHATFPK-FLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
              S H+      LE++ L  ++ +    P  +L+    L+++    +N      N  +   
Sbjct:   268 SSIHNLK---NLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQ 324

Query:   364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
               L+ L LR+  L G     ++    L  L +S N  +G         FP  LA     +
Sbjct:   325 FKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGR--------FPKWLAD--LKI 374

Query:   424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG 483
               + LS+N L G L         L  L L  N F+G+IP ++   S++  L +S+NN  G
Sbjct:   375 RNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE-SQVMVLMLSENNFSG 433

Query:   484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
             ++P  +  +  L  + ++ N L G  P  F   +YLE LD+S N  SG +P+    ST  
Sbjct:   434 SVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPAYFGGST-S 491

Query:   544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXX-E 602
              + +S+N   G      F N S ++ LDL  N  SG +                     +
Sbjct:   492 MLLMSQNNFSGEFPQN-FRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLK 550

Query:   603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFV 662
             G +P  +  L  L+++DLS NNL G +P  L N +          SA T  P   ++Y  
Sbjct:   551 GSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPE--PSAMTIRPYF-SSYTD 607

Query:   663 GPSI---LEKEESIMFT-------TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGK 712
              P+I   +E E   +F+       +K++ F  +   L  +  +DLS NKL GEIP  +G 
Sbjct:   608 IPNIERLIEIESEDIFSLVVNWKNSKQVLFD-RNFYLYTL--LDLSKNKLHGEIPTSLGN 664

Query:   713 LTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN 772
             L +++ LN S+N  +G+IP SF +L +VESLD+SHNNL G+IP  L +L+ L    + +N
Sbjct:   665 LKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNN 724

Query:   773 NL 774
              L
Sbjct:   725 KL 726

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 2.6e-52, P = 2.6e-52
 Identities = 221/792 (27%), Positives = 348/792 (43%)

Query:     3 LVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFNLENWVD-DENHSDCCKWEGV 61
             LV  LL I+     G  G +  +   LL +K     +P   +     + ++ + C W GV
Sbjct:     4 LVLLLLFILCFSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGV 63

Query:    62 EC-NTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENXXXX 120
              C NT   RV AL L+          G ++      F  L  L L SNN+ G +      
Sbjct:    64 TCDNTGLFRVIALNLTG-----LGLTGSISP-WFGRFDNLIHLDLSSNNLVGPIPTALSN 117

Query:   121 XXXXXXXXXXXXXXXXXFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED 180
                                  I S L  L ++R+L +G N L G  D+ ETL N  NL+ 
Sbjct:   118 LTSLESLFLFSNQ----LTGEIPSQLGSLVNIRSLRIGDNELVG--DIPETLGNLVNLQM 171

Query:   181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR 240
             L L    L   I   +     ++ L +Q+  ++G +   E G C    L       N L 
Sbjct:   172 LALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPI-PAELGNC--SDLTVFTAAENMLN 228

Query:   241 GTLPC----------LYL--NQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFF 286
             GT+P           L L  N LTG I S  L  ++ ++ L L  NQ Q  IP SL    
Sbjct:   229 GTIPAELGRLENLEILNLANNSLTGEIPSQ-LGEMSQLQYLSLMANQLQGLIPKSLADLG 287

Query:   287 NLSKLKVFSGEFN-EIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY-NQHDLELV 344
             NL  L + +     EI   PE   + +   QL  + L+ + +  + PK +  N  +LE +
Sbjct:   288 NLQTLDLSANNLTGEI---PEEFWNMS---QLLDLVLANNHLSGSLPKSICSNNTNLEQL 341

Query:   345 DFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNI 404
               S + L GE P  L K   +L  L L NNSL+G     +     L  L++  N  +G +
Sbjct:   342 VLSGTQLSGEIPVELSKCQ-SLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTL 400

Query:   405 PLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS 464
                I     S+L     NL++LVL  N+L G+L  + + LRKL  L L  N F+GEIP+ 
Sbjct:   401 SPSI-----SNLT----NLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQE 451

Query:   465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL 524
             + NC+ L+ + M  N+  G IP  +G L  LN + +  N L G +P      + L ILDL
Sbjct:   452 IGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDL 511

Query:   525 SENNISGSLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY 583
             ++N +SGS+PS       ++Q+ L  N L G L   +  +  ++  ++LS+N  +G I +
Sbjct:   512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLP-DSLISLRNLTRINLSHNRLNGTI-H 569

Query:   584 WXXXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 643
                               E E+P +L   + L  + L  N L G+IP  L      +  D
Sbjct:   570 PLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLD 629

Query:   644 NVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT 703
              + S+A T     +       + ++   +  F +  I   + GK L+++  + LS N+  
Sbjct:   630 -MSSNALTGTIPLQLVLCKKLTHIDLNNN--FLSGPIP-PWLGK-LSQLGELKLSSNQFV 684

Query:   704 GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA 763
               +P ++   T +  L+   N+L G IP    NL  +  L++  N  +G +P  + +L+ 
Sbjct:   685 ESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSK 744

Query:   764 LVVFSVAHNNLS 775
             L    ++ N+L+
Sbjct:   745 LYELRLSRNSLT 756

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 2.4e-49, P = 2.4e-49
 Identities = 199/653 (30%), Positives = 296/653 (45%)

Query:   142 IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTS 201
             I   ++GL  LR LSL  N   G+I    +L   T L  + L Y+SL   +  ++   TS
Sbjct:    84 ISDRISGLRMLRKLSLRSNSFNGTIPT--SLAYCTRLLSVFLQYNSLSGKLPPAMRNLTS 141

Query:   202 LKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC--LYLNQLTG-NISSS 258
             L+  ++   R+ G +     GL     LQ L +  N   G +P     L QL   N+S +
Sbjct:   142 LEVFNVAGNRLSGEI---PVGLP--SSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYN 196

Query:   259 PLI--------HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHS 310
              L         +L S++ L+L +N  Q         N S L   S   NEI     +++ 
Sbjct:   197 QLTGEIPASLGNLQSLQYLWLDFNLLQGTLP-SAISNCSSLVHLSASENEIGGVIPAAYG 255

Query:   311 TTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEF-PNWLLKNNPNLSTL 369
               PK  LE +SLS ++   T P  L+    L +V    +       P         L  L
Sbjct:   256 ALPK--LEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVL 313

Query:   370 VLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLS 429
              L+ N +SG F   +     L  L VS N F G IP +IG     +L      LE L L+
Sbjct:   314 DLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIG-----NLK----RLEELKLA 364

Query:   430 ENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL 489
              NSL G++  +      L  L  + N   G+IP+ L     L+ L +  N+  G +P+ +
Sbjct:   365 NNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSM 424

Query:   490 GNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSHSTIQQVHLS 548
              NL  L  + +  N+L G  P+E   L  L  LDLS N  SG++P S S+ S +  ++LS
Sbjct:   425 VNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLS 484

Query:   549 KNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEGEVP 606
              N   G  P   G  F    +  LDLS  + SG +P                    G VP
Sbjct:   485 GNGFSGEIPASVGNLFK---LTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVP 541

Query:   607 NQLCGLKQLRLIDLSNNNLFGQIP---GCLDN-TSLHNNGDNVGSSAPTFNPNRRTTYFV 662
                  L  LR ++LS+N+  G+IP   G L    SL  + +++  S P    N       
Sbjct:   542 EGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSAL--- 598

Query:   663 GPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFS 722
                +LE   + +     I       P  K+  +DL  N L+GEIPP+I + +++ +L+  
Sbjct:   599 --EVLELRSNRLMG--HIPADLSRLPRLKV--LDLGQNNLSGEIPPEISQSSSLNSLSLD 652

Query:   723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA-LVVFSVAHNNL 774
             HN+L+GVIP SFS L+ +  +D+S NNL G+IP  L  +++ LV F+V+ NNL
Sbjct:   653 HNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNL 705

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III000165 hypothetical protein (1014 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	829
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  192 bits (490), Expect = 6e-51
 Identities = 182/640 (28%), Positives = 293/640 (45%), Gaps = 87/640 (13%)

Query: 2   MLVFFLLTIILEGCWGTEGCLEQERSALLRLKHDFFNDPFN-LENWVDDENHSDCCKWEG 60
            L+F L  + L         L  E   LL       NDP   L NW    + +D C W+G
Sbjct: 11  YLIFMLFFLFL-----NFSMLHAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQG 62

Query: 61  VECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLT-PFQQLETLHLDSNNIAGFVENGGL 119
           + CN S+ RV ++ LS K     + +G++++++   P+  ++T++L +N ++G +    +
Sbjct: 63  ITCNNSS-RVVSIDLSGK-----NISGKISSAIFRLPY--IQTINLSNNQLSGPIP-DDI 113

Query: 120 ERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLE 179
              S  S L+ LNL  N F  SI      + +L TL L  N L G I     + +F++L+
Sbjct: 114 FTTS--SSLRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNMLSGEI--PNDIGSFSSLK 167

Query: 180 DLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDL 239
            L L  + L   I  S+   TSL+ L++ + ++ G +  +   L ++  L+ +++G N+L
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE---LGQMKSLKWIYLGYNNL 224

Query: 240 RGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNLSKLKVFSGE 297
            G +P     ++ G         LTS+  L L YN     IP SL    NL  L ++  +
Sbjct: 225 SGEIP----YEIGG---------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 298 FNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPN 357
                                   LSG       P  +++   L  +D SD++L GE P 
Sbjct: 272 ------------------------LSGP-----IPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 358 WLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA 417
            +++   NL  L L +N+ +G     +     L  L +  N F G IP  +G +      
Sbjct: 303 LVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN----- 356

Query: 418 MGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMS 477
               NL  L LS N+L G++         L +L L +N   GEIPKSL  C  L  + + 
Sbjct: 357 ----NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 478 DNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS 537
           DN+  G +P+    L  +  + +++N+LQG I      +  L++L L+ N   G LP   
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472

Query: 538 SHSTIQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
               ++ + LS+N   G  P K G+    S ++ L LS N  SG IP  +    +L  L 
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSL---SELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 596 LANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
           L++N L G++P     +  L  +DLS N L G+IP  L N
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  183 bits (467), Expect = 6e-48
 Identities = 160/534 (29%), Positives = 241/534 (45%), Gaps = 61/534 (11%)

Query: 249 NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKL----KVFSGEFNEIYVE 304
           NQL+G I        +S+  L LS N F          NL  L     + SGE   I  +
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE---IPND 159

Query: 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP 364
             S  S      L+ + L G+ +    P  L N   LE +  + + L G+ P  L +   
Sbjct: 160 IGSFSS------LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK- 212

Query: 365 NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLE 424
           +L  + L  N+LSG     I     L+ L +  N   G IP  +G            NL+
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG---------NLKNLQ 263

Query: 425 YLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN 484
           YL L +N L G +      L+KL  L L  N  +GEIP+ +     LE L++  NN  G 
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS--CSSHSTI 542
           IP  L +L  L  + + SN   G IP    + N L +LDLS NN++G +P   CSS +  
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 543 QQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNN 600
           + +  S N L G  P   G      S+  + L  NSFSG +P    +L  + +L ++NNN
Sbjct: 384 KLILFS-NSLEGEIPKSLGAC---RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 601 LEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660
           L+G + ++   +  L+++ L+ N  FG +P    +  L N            + +R    
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN-----------LDLSRNQFS 488

Query: 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720
              P  L     +M                    + LS NKL+GEIP ++     + +L+
Sbjct: 489 GAVPRKLGSLSELM-------------------QLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
            SHN L+G IP SFS +  +  LD+S N L+G+IP  L  + +LV  +++HN+L
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (458), Expect = 9e-47
 Identities = 137/458 (29%), Positives = 208/458 (45%), Gaps = 66/458 (14%)

Query: 319 SVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG 378
           S+ LSG +I       ++    ++ ++ S++ L G  P+ +   + +L  L L NN+ +G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 379 PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLF 438
                  P+  L+ L +S N   G IP +IG +                           
Sbjct: 133 SIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFS-------------------------- 164

Query: 439 SKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDI 498
                   L  L L  N   G+IP SL+N + LE L ++ N L G IP  LG + SL  I
Sbjct: 165 -------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217

Query: 499 MMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSHSTIQQVHLSKNMLYGPLK 557
            +  N+L G IP E   L  L  LDL  NN++G +P S  +   +Q + L +N L GP+ 
Sbjct: 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL 617
             + F+   +++LDLS NS SG IP  + +L  L  L L +NN  G++P  L  L +L++
Sbjct: 278 -PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 618 IDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT 677
           + L +N   G+IP    N   HNN   +  S         T    G  I E   S     
Sbjct: 337 LQLWSNKFSGEIPK---NLGKHNNLTVLDLS---------TNNLTG-EIPEGLCSSGNLF 383

Query: 678 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNL 737
           K I FS                N L GEIP  +G   ++R +    N+ +G +P  F+ L
Sbjct: 384 KLILFS----------------NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 738 NQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
             V  LD+S+NNL G+I  +  ++ +L + S+A N   
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  176 bits (449), Expect = 9e-46
 Identities = 141/478 (29%), Positives = 219/478 (45%), Gaps = 31/478 (6%)

Query: 317 LESVSLSGSDIHATFPK-FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
           +++++LS + +    P         L  ++ S++N  G  P   +   PNL TL L NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNM 151

Query: 376 LSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIG-------VYFPSHLAMGCF------- 421
           LSG     I     L  L +  N   G IP  +        +   S+  +G         
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 422 -NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN 480
            +L+++ L  N+L G++  +   L  L  L L  N  TG IP SL N   L+ L++  N 
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCSSH 539
           L G IP  + +L  L  + ++ N L G IP    QL  LEIL L  NN +G +P + +S 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 540 STIQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA 597
             +Q + L  N   G  P   G     +++  LDLS N+ +G IP  +     L  LIL 
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLG---KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRR 657
           +N+LEGE+P  L   + LR + L +N+  G++P       L    D    S         
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD---ISNNNLQGRIN 445

Query: 658 TTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR 717
           +  +  PS+     +       +  S+  K L  +   DLS N+ +G +P ++G L+ + 
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL---DLSRNQFSGAVPRKLGSLSELM 502

Query: 718 ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            L  S N L+G IP   S+  ++ SLD+SHN L+G+IP    E+  L    ++ N LS
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (363), Expect = 4e-35
 Identities = 125/442 (28%), Positives = 191/442 (43%), Gaps = 86/442 (19%)

Query: 347 SDSNLKGEFPNW---LLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN 403
           S+ N   +   W      N+  + ++ L   ++SG   + I    ++  +++S N   G 
Sbjct: 49  SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP 108

Query: 404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPK 463
           IP +I   F +       +L YL LS N+  G +   +  +  L  L L  N  +GEIP 
Sbjct: 109 IPDDI---FTT-----SSSLRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNMLSGEIPN 158

Query: 464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523
            + + S L+ L +  N L G IP  L NL+SL  + +ASN L G IP E  Q+  L+ + 
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY 583
           L  NN+SG +P       I  +                   +S+  LDL YN+ +G IP 
Sbjct: 219 LGYNNLSGEIPY-----EIGGL-------------------TSLNHLDLVYNNLTGPIPS 254

Query: 584 WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 643
            +  L  L+YL L  N L G +P  +  L++L  +DLS+N+L G+IP             
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP------------- 301

Query: 644 NVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEI----SFSYKGK------PLNKMY 693
                                     E  I     EI    S ++ GK       L ++ 
Sbjct: 302 --------------------------ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            + L  NK +GEIP  +GK  N+  L+ S NNLTG IP    +   +  L +  N+L G+
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 754 IPPQLVELNALVVFSVAHNNLS 775
           IP  L    +L    +  N+ S
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  135 bits (341), Expect = 2e-32
 Identities = 136/459 (29%), Positives = 201/459 (43%), Gaps = 40/459 (8%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
           LT    LE L L SN + G +       L  +  LK + LG N  +  I   + GL+SL 
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            L L YN L G I    +L N  NL+ L L  + L   I  SI +   L  L + +  + 
Sbjct: 240 HLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSY 273
           G +    E + +L +L+ LH+  N+  G +P          ++S P + +     L L  
Sbjct: 298 GEI---PELVIQLQNLEILHLFSNNFTGKIP--------VALTSLPRLQV-----LQLWS 341

Query: 274 NQF--QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATF 331
           N+F  +IP +L    NL+ L + +        E   S     K  L S SL G       
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE-----I 396

Query: 332 PKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLD 391
           PK L     L  V   D++  GE P+   K  P +  L + NN+L G   +       L 
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 392 ALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLH 451
            L +++N F G +P           + G   LE L LS N   G +  K   L +L +L 
Sbjct: 456 MLSLARNKFFGGLPD----------SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505

Query: 452 LDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPL 511
           L  N  +GEIP  LS+C +L  L +S N L G IPA    +  L+ + ++ N L G IP 
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 512 EFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
               +  L  +++S N++ GSLPS  +   I    ++ N
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 8e-15
 Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 39/227 (17%)

Query: 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ 608
           K+ +  PLKY    N +S   + L       N         R+  + L+  N+ G++ + 
Sbjct: 38  KSSINDPLKY--LSNWNSSADVCLWQGITCNNSS-------RVVSIDLSGKNISGKISSA 88

Query: 609 LCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILE 668
           +  L  ++ I+LSNN L G IP  +  TS         SS    N               
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTS---------SSLRYLN--------------- 124

Query: 669 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG 728
                  +    + S     +  +  +DLS N L+GEIP  IG  ++++ L+   N L G
Sbjct: 125 ------LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            IP S +NL  +E L ++ N L G+IP +L ++ +L    + +NNLS
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 7e-13
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
           G+ L    L G IP  I KL +++++N S N++ G IP S  ++  +E LD+S+N+ NG 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 754 IPPQLVELNALVVFSVAHNNLS 775
           IP  L +L +L + ++  N+LS
Sbjct: 482 IPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query: 450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPI 509
           L LD     G IP  +S    L+ + +S N++ GNIP  LG+++SL  + ++ N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 510 PLEFCQLNYLEILDLSENNISGSLPS 535
           P    QL  L IL+L+ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 3e-10
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 25/128 (19%)

Query: 505 LQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR 564
           L+G IP +  +L +L+ ++LS N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLI-DLSNN 623
           +S+  LDLSYNSF+G+IP  + +L  LR L L  N+L G VP  L G    R   + ++N
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Query: 624 NLFGQIPG 631
                IPG
Sbjct: 526 AGLCGIPG 533

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 22 LEQERSALLRLKHDFFNDPFN-LENWVDDENHSDCCKWEGVECN 64
          L  +R ALL  K     DP   L +W  + + SD C W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSW--NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 9e-09
 Identities = 31/85 (36%), Positives = 45/85 (52%)

Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
           L L    L G + +  + LR L  ++L  N   G IP SL + + LE L +S N+  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 486 PARLGNLSSLNDIMMASNHLQGPIP 510
           P  LG L+SL  + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 24/70 (34%), Positives = 43/70 (61%)

Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
           L  +  ++LS N + G IPP +G +T++  L+ S+N+  G IP S   L  +  L+++ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 749 NLNGKIPPQL 758
           +L+G++P  L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 695 VDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL 750
           +DLS N+LT  IP      L N++ L+ S NNLT + P +FS L  + SLD+S NNL
Sbjct: 5   LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEY 425
           +  L L N  L G     I    HL ++++S N  +GNIP  +G            +LE 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG---------SITSLEV 470

Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSL 465
           L LS NS +G +      L  L  L+L+ N  +G +P +L
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 5e-06
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628
           +++LS NS  GNIP  +  +  L  L L+ N+  G +P  L  L  LR+++L+ N+L G+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 629 IPGCLDNTSLH----NNGDNVG 646
           +P  L    LH    N  DN G
Sbjct: 506 VPAALGGRLLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 387 HWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK 446
            W +D L +     +G IP +I     S L     +L+ + LS NS+ G +      +  
Sbjct: 417 KWFIDGLGLDNQGLRGFIPNDI-----SKLR----HLQSINLSGNSIRGNIPPSLGSITS 467

Query: 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
           L  L L  N F G IP+SL   + L  L ++ N+L G +PA LG
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 37/140 (26%)

Query: 103 LHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRL 162
           L LD+  + GF+ N     +S L  L+ +NL  N    +I  SL  ++SL  L L YN  
Sbjct: 423 LGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 163 KGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALG----- 217
            GSI   E+L   T+L  L L+ +SL                    +GRV  ALG     
Sbjct: 479 NGSI--PESLGQLTSLRILNLNGNSL--------------------SGRVPAALGGRLLH 516

Query: 218 ------DDEEGLCRLGHLQE 231
                  D  GLC +  L+ 
Sbjct: 517 RASFNFTDNAGLCGIPGLRA 536

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 29/57 (50%)

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           +LDLS N  +       + L  L+ L L+ NNL    P    GL  LR +DLS NNL
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 715 NIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
           N+++L+ S+N LT +   +F  L  ++ LD+S NNL    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 716 IRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
           I  L   +  L G IP   S L  ++S+++S N++ G IPP L  + +L V  +++N+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 570 LDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQI 629
           L L      G IP  I +L  L+ + L+ N++ G +P  L  +  L ++DLS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 630 PGCL 633
           P  L
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 99  QLETLHLDSNNIAGFVENGGLER--LSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
            L++L L +N +        +      GL  LK+L+L  N   +    + +GL SLR+L 
Sbjct: 1   NLKSLDLSNNRL------TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 157 LGYNRL 162
           L  N L
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 79/281 (28%), Positives = 106/281 (37%), Gaps = 58/281 (20%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA-----NYFTGEIPKSL-----SNCSRL 471
           NLE L LS+ S   +L S   YL KL  L +          TG   KSL     S CSRL
Sbjct: 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRL 717

Query: 472 EG----------LYMSDNNLYGNIPA--RLGNLSSLNDIMMASNHL----QGPIPLEFCQ 515
           +           L + +  +    P+  RL NL  L    M S  L    Q   PL    
Sbjct: 718 KSFPDISTNISWLDLDETAI-EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776

Query: 516 LNYLEILDLSENNISGSLPSCSSHSTIQQVHLS----KNMLYGPLKYGTFFNRSSIVTLD 571
              L  L LS+      LPS S  +  +  HL      N+   P    T  N  S+ +LD
Sbjct: 777 SPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLP----TGINLESLESLD 831

Query: 572 LSYNS-------FSGNI-------------PYWIERLIRLRYLILAN-NNLEGEVPNQLC 610
           LS  S        S NI             P+WIE+   L +L +   NNL+    N + 
Sbjct: 832 LSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-IS 890

Query: 611 GLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPT 651
            LK L  +D S+     +       + +    DN+ S  P+
Sbjct: 891 KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPS 931

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 62/207 (29%), Positives = 89/207 (42%), Gaps = 32/207 (15%)

Query: 421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSN-CSRLEGLYMSDN 479
             L  L L+ N L   +      L  L  L LD N  T +IP  +    S L+ L +SDN
Sbjct: 93  LPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDN 150

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +  ++P+ L NL +L ++ ++ N L   +P     L+ L  LDLS N IS  LP     
Sbjct: 151 KI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
                                    S++  LDLS NS    +   +  L  L  L L+NN
Sbjct: 208 L------------------------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNLF 626
            LE ++P  +  L  L  +DLSNN + 
Sbjct: 243 KLE-DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	829
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
PLN03150	623	hypothetical protein; Provisional	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG4341	483	consensus F-box protein containing LRR [General fu	97.38
KOG4341	483	consensus F-box protein containing LRR [General fu	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.28
KOG4308	478	consensus LRR-containing protein [Function unknown	93.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.81
KOG4308	478	consensus LRR-containing protein [Function unknown	91.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.94
smart00370	26	LRR Leucine-rich repeats, outliers.	87.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.06
smart00370	26	LRR Leucine-rich repeats, outliers.	85.77
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.77
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.66
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.77

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-68  Score=656.64  Aligned_cols=567  Identities=32%  Similarity=0.484  Sum_probs=348.2

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCCCc
Q 037427           22 LEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLE  101 (829)
Q Consensus        22 ~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~  101 (829)
                      .++|++||++||+++.++...+.+|.   ..++||.|+||+|++ .++|+.|+|+++++.   +.  + +..|..+++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~---~~--~-~~~~~~l~~L~   96 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNIS---GK--I-SSAIFRLPYIQ   96 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCcc---cc--C-ChHHhCCCCCC
Confidence            46899999999999976555788996   467899999999985 579999999887541   11  1 22344445555


Q ss_pred             EEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhc-CCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427          102 TLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED  180 (829)
Q Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~  180 (829)
                      +|+|++|.+.+                            .+|..+. ++++|++|+|++|.+++.+|    .+.+++|++
T Consensus        97 ~L~Ls~n~~~~----------------------------~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~  144 (968)
T PLN00113         97 TINLSNNQLSG----------------------------PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLET  144 (968)
T ss_pred             EEECCCCccCC----------------------------cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCE
Confidence            55555554444                            4443322 45555555555555544444    133444555


Q ss_pred             EecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccCCCC
Q 037427          181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSP  259 (829)
Q Consensus       181 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~  259 (829)
                      |+|++|.+++.+|..++++++|++|++++|.+.+.+|.   .++++++|++|++++|.+.+.+| .+             
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~l-------------  208 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN---SLTNLTSLEFLTLASNQLVGQIPREL-------------  208 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCCh---hhhhCcCCCeeeccCCCCcCcCChHH-------------
Confidence            55555555444445555555555555555555544444   44455555555555555444433 22             


Q ss_pred             CCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCC
Q 037427          260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH  339 (829)
Q Consensus       260 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~  339 (829)
                       +++++|++|++++|.+.+.+|. .++++++|+                          +|++++|.+.+.+|..+..++
T Consensus       209 -~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~--------------------------~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        209 -GQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLN--------------------------HLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             -cCcCCccEEECcCCccCCcCCh-hHhcCCCCC--------------------------EEECcCceeccccChhHhCCC
Confidence             3444444444444443322221 111221111                          111112222223334444444


Q ss_pred             CcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccC
Q 037427          340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG  419 (829)
Q Consensus       340 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~  419 (829)
                      +|+.|++++|.+.+.+|.+ +.++++|++|++++|.+.+.+|..+..+                                
T Consensus       261 ~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--------------------------------  307 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQL--------------------------------  307 (968)
T ss_pred             CCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhHcCC--------------------------------
Confidence            5555555555554444444 2334444444444443333322222222                                


Q ss_pred             CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427          420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM  499 (829)
Q Consensus       420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  499 (829)
                       ++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+
T Consensus       308 -~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        308 -QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             -CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence             3444444444444444444444455555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427          500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG  579 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  579 (829)
                      +++|++.+.+|..+..+++|+.|++++|+++                       +.+|.. +..++.|+.|++++|.+++
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~-----------------------~~~p~~-~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-----------------------GELPSE-FTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEee-----------------------eECChh-HhcCCCCCEEECcCCcccC
Confidence            5555555555555555555555555555444                       444444 6677777888888888887


Q ss_pred             cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427          580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT  659 (829)
Q Consensus       580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (829)
                      .+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.++.                      
T Consensus       443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~----------------------  499 (968)
T PLN00113        443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS----------------------  499 (968)
T ss_pred             ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh----------------------
Confidence            777777778888888888888887777655 457889999999999888887666544                      


Q ss_pred             eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccccccc
Q 037427          660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQ  739 (829)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  739 (829)
                                                     +|+.|+|++|++++.+|..++.+++|++|+|++|.+++.+|..|+.+++
T Consensus       500 -------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  548 (968)
T PLN00113        500 -------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV  548 (968)
T ss_pred             -------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence                                           7888999999999999999999999999999999999999999999999


Q ss_pred             CCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCC
Q 037427          740 VESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCL  786 (829)
Q Consensus       740 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~  786 (829)
                      |+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..++|..
T Consensus       549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~  595 (968)
T PLN00113        549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA  595 (968)
T ss_pred             CCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence            99999999999999999999999999999999999999999888753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.2e-58  Score=563.08  Aligned_cols=514  Identities=32%  Similarity=0.506  Sum_probs=354.0

Q ss_pred             cEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcC
Q 037427           69 RVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG  148 (829)
Q Consensus        69 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  148 (829)
                      +++.|+|+++.+   .  +.++...+..+++||+|+|++|++++.+|.      ..+++|++|+|++|.+.+.+|..+++
T Consensus        94 ~L~~L~Ls~n~~---~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~~p~~~~~  162 (968)
T PLN00113         94 YIQTINLSNNQL---S--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGS  162 (968)
T ss_pred             CCCEEECCCCcc---C--CcCChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccccCChHHhc
Confidence            678899998865   2  234555667899999999999999887773      56889999999999998888989999


Q ss_pred             CCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCC
Q 037427          149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGH  228 (829)
Q Consensus       149 L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~  228 (829)
                      +++|++|+|++|.+.+.+|  ..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|.   .++++++
T Consensus       163 l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~  237 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY---EIGGLTS  237 (968)
T ss_pred             CCCCCEEECccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh---hHhcCCC
Confidence            9999999999999888877  7788888899999988888888888888888888888888888887777   6777888


Q ss_pred             CcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCC
Q 037427          229 LQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPES  307 (829)
Q Consensus       229 L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  307 (829)
                      |++|++++|.+++.+| .+              .++++|+.|++++|.+.                              
T Consensus       238 L~~L~L~~n~l~~~~p~~l--------------~~l~~L~~L~L~~n~l~------------------------------  273 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSL--------------GNLKNLQYLFLYQNKLS------------------------------  273 (968)
T ss_pred             CCEEECcCceeccccChhH--------------hCCCCCCEEECcCCeee------------------------------
Confidence            8888888887776655 33              55666666666655543                              


Q ss_pred             CCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCC
Q 037427          308 SHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH  387 (829)
Q Consensus       308 ~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  387 (829)
                                           +.+|.++..+++|++|++++|.+.+.+|.+ +.++++|++|++++|.+++..+..+..+
T Consensus       274 ---------------------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l  331 (968)
T PLN00113        274 ---------------------GPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSL  331 (968)
T ss_pred             ---------------------ccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcC
Confidence                                 345566778889999999999999999987 6789999999999999988777777777


Q ss_pred             CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCC
Q 037427          388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSN  467 (829)
Q Consensus       388 ~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  467 (829)
                      ++|+.|++++|.+.+.+|..                                 +..+++|+.|++++|++++.+|..+..
T Consensus       332 ~~L~~L~L~~n~l~~~~p~~---------------------------------l~~~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        332 PRLQVLQLWSNKFSGEIPKN---------------------------------LGKHNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             CCCCEEECcCCCCcCcCChH---------------------------------HhCCCCCcEEECCCCeeEeeCChhHhC
Confidence            66666666666666555544                                 344445555555555555555555555


Q ss_pred             CCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEE
Q 037427          468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVH  546 (829)
Q Consensus       468 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~  546 (829)
                      +++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++.+|..+ .+++|+.|+
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  458 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS  458 (968)
T ss_pred             cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence            5566666666666666666666666666666666666666666666666666666666666665444322 233333333


Q ss_pred             ccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc
Q 037427          547 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       547 L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      +++|++.+.+                         |..+ ..++|+.|++++|++++.+|..+..+++|+.|++++|++.
T Consensus       459 L~~n~~~~~~-------------------------p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  512 (968)
T PLN00113        459 LARNKFFGGL-------------------------PDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS  512 (968)
T ss_pred             CcCceeeeec-------------------------Cccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence            3333333333                         3322 1234455555555555455555555555555555555555


Q ss_pred             cCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC
Q 037427          627 GQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI  706 (829)
Q Consensus       627 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i  706 (829)
                      +.+|..+..+.                                                     +|++|+|++|.++|.+
T Consensus       513 ~~~p~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        513 GEIPDELSSCK-----------------------------------------------------KLVSLDLSHNQLSGQI  539 (968)
T ss_pred             eeCChHHcCcc-----------------------------------------------------CCCEEECCCCcccccC
Confidence            55555444333                                                     5566666666666677


Q ss_pred             CcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCc-ceee
Q 037427          707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN-LSAA  777 (829)
Q Consensus       707 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~  777 (829)
                      |..++.+++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|.. ..+..+....+.+|+ ++|.
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCC
Confidence            777777777777777777777777777777777777777777777777754 223344445556664 4443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-39  Score=332.01  Aligned_cols=352  Identities=22%  Similarity=0.227  Sum_probs=295.6

Q ss_pred             CCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccccc
Q 037427          366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR  445 (829)
Q Consensus       366 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  445 (829)
                      -+.|++++|++..+.+..|.++++|+++++.+|.++ .||.....         ..+|+.|+|.+|.|+..-.+.+..++
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~---------sghl~~L~L~~N~I~sv~se~L~~l~  149 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE---------SGHLEKLDLRHNLISSVTSEELSALP  149 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc---------ccceeEEeeeccccccccHHHHHhHh
Confidence            445666666666655555666666666666666665 45543332         23688899999988877778888899


Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      .|+.|||+.|.++...-..|..-.++++|+|++|+|+..-...|..+.+|.+|.|++|+++...+..|.++++|+.|||.
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            99999999999986555677777889999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427          526 ENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE  604 (829)
Q Consensus       526 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  604 (829)
                      .|+|.-.--..+ ++++|+.|.|..|.+. .+..++|..+.++++|+|+.|++...-..|+-++++|+.|++++|.|...
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            999873322333 8899999999999994 56667799999999999999999988889999999999999999999988


Q ss_pred             CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427          605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY  684 (829)
Q Consensus       605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (829)
                      -++.+...++|++|||++|+|+..-++.|..++                                               
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------  341 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------  341 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHH-----------------------------------------------
Confidence            889999999999999999999866665555444                                               


Q ss_pred             cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccc---cccccccCCeeecCCCcCcccCCcccccC
Q 037427          685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV---SFSNLNQVESLDVSHNNLNGKIPPQLVEL  761 (829)
Q Consensus       685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~LdLs~N~l~~~ip~~l~~l  761 (829)
                            .|++|+|++|+++..-...|..+++|+.|||++|.++..|-+   .|..|++|+.|+|.+|+|....-.+|..+
T Consensus       342 ------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl  415 (873)
T KOG4194|consen  342 ------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL  415 (873)
T ss_pred             ------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence                  789999999999977788899999999999999999987754   47889999999999999996666889999


Q ss_pred             CCCcEEeccCCcceeecCCC
Q 037427          762 NALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       762 ~~L~~L~ls~N~l~g~ip~~  781 (829)
                      ..|++|||.+|.+...-|..
T Consensus       416 ~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  416 EALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             cccceecCCCCcceeecccc
Confidence            99999999999999887753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-38  Score=325.12  Aligned_cols=371  Identities=21%  Similarity=0.268  Sum_probs=319.8

Q ss_pred             cCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEE
Q 037427          315 FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH  394 (829)
Q Consensus       315 ~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  394 (829)
                      ..-+.|++++|++...-+..|.++++|+++++..|.++ .||.. .....+|+.|+|.+|.|+......+..++.|++||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            45677999999999999999999999999999999998 89973 33445699999999999988888899999999999


Q ss_pred             ccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEE
Q 037427          395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGL  474 (829)
Q Consensus       395 ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  474 (829)
                      |+.|.++ .+|        ...|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++...+..|.++++|+.|
T Consensus       156 LSrN~is-~i~--------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  156 LSRNLIS-EIP--------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hhhchhh-ccc--------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence            9999987 333        2333334689999999999998888889999999999999999997777889999999999


Q ss_pred             ECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCccc
Q 037427          475 YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLY  553 (829)
Q Consensus       475 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~  553 (829)
                      +|..|+|.-.--..|.++++|+.|.+..|++...-...|..+.++++|+|+.|+++..-..++ ++++|+.|+++.|.+.
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence            999999984435689999999999999999998888889999999999999999986655555 9999999999999996


Q ss_pred             CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427          554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL  633 (829)
Q Consensus       554 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  633 (829)
                      .. ..+.+..+++|++|||++|+|+...+..|..+..|++|+|++|.++..-...|..+++|++|||++|.+++.+-+.-
T Consensus       307 ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  307 RI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             ee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence            54 44448889999999999999999999999999999999999999997777889999999999999999987665421


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccC
Q 037427          634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL  713 (829)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l  713 (829)
                      ..                                                |  ..+++|+.|+|.+|++..+...+|.++
T Consensus       386 ~~------------------------------------------------f--~gl~~LrkL~l~gNqlk~I~krAfsgl  415 (873)
T KOG4194|consen  386 VA------------------------------------------------F--NGLPSLRKLRLTGNQLKSIPKRAFSGL  415 (873)
T ss_pred             hh------------------------------------------------h--ccchhhhheeecCceeeecchhhhccC
Confidence            10                                                1  235689999999999996666889999


Q ss_pred             CCCCEEECCCCCCCCCccccccccccCCeeecCCC
Q 037427          714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN  748 (829)
Q Consensus       714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  748 (829)
                      .+|+.|||.+|.|..+.|.+|..+ .|+.|-+..-
T Consensus       416 ~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  416 EALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             cccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence            999999999999999999999988 8888877543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.6e-41  Score=330.54  Aligned_cols=489  Identities=25%  Similarity=0.352  Sum_probs=298.4

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN  177 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~  177 (829)
                      ..|+.+++++|.+....++     +.++..|.+|++++|.+. ..|++++.+..++.|+.++|+++ .+|  +.+..+.+
T Consensus        45 v~l~~lils~N~l~~l~~d-----l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp--~~i~s~~~  115 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRED-----LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP--EQIGSLIS  115 (565)
T ss_pred             cchhhhhhccCchhhccHh-----hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc--HHHhhhhh
Confidence            3467788888888766654     788888999999999887 56788899999999999999887 666  78888888


Q ss_pred             CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCC
Q 037427          178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS  257 (829)
Q Consensus       178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~  257 (829)
                      |+.|+.++|.+. ..|++++.+..|..++..+|+++. .|.   ++..+.+|..|++.+|++....|..           
T Consensus       116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~---~~~~~~~l~~l~~~~n~l~~l~~~~-----------  179 (565)
T KOG0472|consen  116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPE---DMVNLSKLSKLDLEGNKLKALPENH-----------  179 (565)
T ss_pred             hhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-Cch---HHHHHHHHHHhhccccchhhCCHHH-----------
Confidence            888888888877 455677888888888888888773 454   5777777888888888776332222           


Q ss_pred             CCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhC
Q 037427          258 SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN  337 (829)
Q Consensus       258 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~  337 (829)
                         -+++.|++||...|-+. .+|.+ ++.+.+|+.|++..|++...+                            .|.+
T Consensus       180 ---i~m~~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~~lP----------------------------ef~g  226 (565)
T KOG0472|consen  180 ---IAMKRLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIRFLP----------------------------EFPG  226 (565)
T ss_pred             ---HHHHHHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccccCC----------------------------CCCc
Confidence               34677777777776654 34432 555555555555555443222                            2444


Q ss_pred             CCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccc
Q 037427          338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA  417 (829)
Q Consensus       338 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~  417 (829)
                      +..|.+++++.|++. .+|+...++++++.+||+..|++.                         .+|++          
T Consensus       227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde----------  270 (565)
T KOG0472|consen  227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDE----------  270 (565)
T ss_pred             cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------------------------cCchH----------
Confidence            444555555555554 455544444444444443333332                         23333          


Q ss_pred             cCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCC---C
Q 037427          418 MGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS---S  494 (829)
Q Consensus       418 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~  494 (829)
                                             +..+.+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+.. +-..+-+..   -
T Consensus       271 -----------------------~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~v  324 (565)
T KOG0472|consen  271 -----------------------ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEV  324 (565)
T ss_pred             -----------------------HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHH
Confidence                                   333344444444444444 233344444 44555555554431 111110000   0


Q ss_pred             CCEEE--ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCC--CCccEE
Q 037427          495 LNDIM--MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR--SSIVTL  570 (829)
Q Consensus       495 L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L  570 (829)
                      |++|.  +..-.++..  +. +...   .    .....+..|+.....+.+.|++++-++ ..+|...|...  .-....
T Consensus       325 LKyLrs~~~~dglS~s--e~-~~e~---~----~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~V  393 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQS--EG-GTET---A----MTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSV  393 (565)
T ss_pred             HHHHHHhhccCCCCCC--cc-cccc---c----CCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEE
Confidence            00000  000000000  00 0000   0    000011122222333445555555554 34555433322  125677


Q ss_pred             EccCCcCCCcchhhhhcCCCCCE-EEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCC
Q 037427          571 DLSYNSFSGNIPYWIERLIRLRY-LILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSA  649 (829)
Q Consensus       571 ~Ls~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  649 (829)
                      +++.|++. ++|..+..+..+.. +.+++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+.            
T Consensus       394 nfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv------------  458 (565)
T KOG0472|consen  394 NFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV------------  458 (565)
T ss_pred             ecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhh------------
Confidence            77777776 56666655555444 445555554 77777888888888888877765 5665555443            


Q ss_pred             CCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCC
Q 037427          650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV  729 (829)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  729 (829)
                                                               .|+.||+|+|+|. .+|..+..+..|+.+-.++|++...
T Consensus       459 -----------------------------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  459 -----------------------------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             -----------------------------------------hhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence                                                     6778888888887 7888888888888888888888877


Q ss_pred             ccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcce
Q 037427          730 IPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS  775 (829)
Q Consensus       730 ~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  775 (829)
                      .|+.+.++.+|..|||.+|.+. .||+.++++++|++|++++|++.
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            7877888999999999999888 78888899999999999999888

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=330.72  Aligned_cols=417  Identities=26%  Similarity=0.319  Sum_probs=232.6

Q ss_pred             CCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEc
Q 037427          128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI  207 (829)
Q Consensus       128 L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  207 (829)
                      +..|+++.|.+-....+.+.+.-+|+.||+++|.+. ..|  ..+..+.+|+.|.++.|.+. ..|.+..++.+|++|.|
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp--~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP--IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC--chhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence            555555555544322333444444666666666554 334  44555555555555555554 23355555566666666


Q ss_pred             ccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhc
Q 037427          208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFF  286 (829)
Q Consensus       208 ~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  286 (829)
                      .+|.+. ..|.   ++..+++|++|+++.|++. .+| .+              ..++.++.+..++|...     .   
T Consensus        99 ~~n~l~-~lP~---~~~~lknl~~LdlS~N~f~-~~Pl~i--------------~~lt~~~~~~~s~N~~~-----~---  151 (1081)
T KOG0618|consen   99 KNNRLQ-SLPA---SISELKNLQYLDLSFNHFG-PIPLVI--------------EVLTAEEELAASNNEKI-----Q---  151 (1081)
T ss_pred             ccchhh-cCch---hHHhhhcccccccchhccC-CCchhH--------------HhhhHHHHHhhhcchhh-----h---
Confidence            555544 3444   4555556666666665554 333 22              34444444444444110     0   


Q ss_pred             CCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCC
Q 037427          287 NLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNL  366 (829)
Q Consensus       287 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  366 (829)
                                              ..+...++.+++..+.+.+.++..+..++.  .|||++|.+. ...   ...+++|
T Consensus       152 ------------------------~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l  201 (1081)
T KOG0618|consen  152 ------------------------RLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANL  201 (1081)
T ss_pred             ------------------------hhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccch
Confidence                                    001112445555555555656555555555  5777777776 222   4466777


Q ss_pred             CEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccC
Q 037427          367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK  446 (829)
Q Consensus       367 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  446 (829)
                      +.|....|++....    ..-++++.|+.++|.++...+...    |       .+|+++++++|++++. |+++..+.+
T Consensus       202 ~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p~----p-------~nl~~~dis~n~l~~l-p~wi~~~~n  265 (1081)
T KOG0618|consen  202 EVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHPV----P-------LNLQYLDISHNNLSNL-PEWIGACAN  265 (1081)
T ss_pred             hhhhhhhcccceEE----ecCcchheeeeccCcceeeccccc----c-------ccceeeecchhhhhcc-hHHHHhccc
Confidence            77777777665321    123456677777776653222111    1       2677777777777754 377777777


Q ss_pred             CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCC-CCEEeCC
Q 037427          447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY-LEILDLS  525 (829)
Q Consensus       447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls  525 (829)
                      |+.++..+|+++ .+|..+...++|+.|.+.+|.+. -+|.....+++|++|+|..|++....+..+..+.. |..|+.+
T Consensus       266 le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s  343 (1081)
T KOG0618|consen  266 LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS  343 (1081)
T ss_pred             ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence            777777777775 56666667777777777777776 55666666777777777777776443333333333 5666666


Q ss_pred             CCcCcccCCCCC--CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427          526 ENNISGSLPSCS--SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       526 ~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      .|++. ..|...  ..+.|+.|++.+|.++...-.- +.+.++|++|+|++|++.......+.++..|++|+|++|+++ 
T Consensus       344 ~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  344 SNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             hcccc-ccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence            66665 233222  4455666666666654432222 555556666666666655433444555555666666666655 


Q ss_pred             cCCcccCCCCCCCEEECcCCcCc
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      .+|..+..++.|++|...+|++.
T Consensus       421 ~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  421 TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             hhhHHHHhhhhhHHHhhcCCcee
Confidence            45555555555555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=305.35  Aligned_cols=478  Identities=26%  Similarity=0.317  Sum_probs=302.7

Q ss_pred             EEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCC
Q 037427           70 VKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGL  149 (829)
Q Consensus        70 v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L  149 (829)
                      ...+.++++.+.       .-...+..+..|.+|++++|++....+.     ++.+..++.|+.++|.++ .+|..++.+
T Consensus        47 l~~lils~N~l~-------~l~~dl~nL~~l~vl~~~~n~l~~lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~  113 (565)
T KOG0472|consen   47 LQKLILSHNDLE-------VLREDLKNLACLTVLNVHDNKLSQLPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSL  113 (565)
T ss_pred             hhhhhhccCchh-------hccHhhhcccceeEEEeccchhhhCCHH-----HHHHHHHHHhhcccchHh-hccHHHhhh
Confidence            345667766542       1234567889999999999999877664     788999999999999998 689999999


Q ss_pred             CCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC
Q 037427          150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL  229 (829)
Q Consensus       150 ~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L  229 (829)
                      ..|+.|+.++|.+. .+|  +.++.+..|+.|+..+|+++ ..|++++.+.+|..+++.+|.+....|.    .-+++.|
T Consensus       114 ~~l~~l~~s~n~~~-el~--~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L  185 (565)
T KOG0472|consen  114 ISLVKLDCSSNELK-ELP--DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRL  185 (565)
T ss_pred             hhhhhhhcccccee-ecC--chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH----HHHHHHH
Confidence            99999999999998 455  68999999999999999998 5678899999999999999999855444    3448999


Q ss_pred             cEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCC
Q 037427          230 QELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESS  308 (829)
Q Consensus       230 ~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  308 (829)
                      ++||...|-++ .+| .+              +.+.+|+.|+|..|++. ..|  .|..|..|+.+..+.|.|...+.  
T Consensus       186 ~~ld~~~N~L~-tlP~~l--------------g~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa--  245 (565)
T KOG0472|consen  186 KHLDCNSNLLE-TLPPEL--------------GGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPA--  245 (565)
T ss_pred             Hhcccchhhhh-cCChhh--------------cchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHH--
Confidence            99999999776 565 55              89999999999999987 444  48899988888888887764432  


Q ss_pred             CCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCC
Q 037427          309 HSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW  388 (829)
Q Consensus       309 ~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  388 (829)
                                              ....++.++.+||+++|++. +.|..+ ..+.+|++||+++|.+++ .|..++++ 
T Consensus       246 ------------------------e~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sLgnl-  297 (565)
T KOG0472|consen  246 ------------------------EHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSLGNL-  297 (565)
T ss_pred             ------------------------HHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCcccccc-
Confidence                                    22345666777777777776 666663 356667777777777764 45566666 


Q ss_pred             CCCEEEccCCcccccCchhhhhccccccccCCCcccE----EEcccc---ccc-----ccCccccccccCCcEEeccccc
Q 037427          389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEY----LVLSEN---SLH-----GQLFSKKNYLRKLARLHLDANY  456 (829)
Q Consensus       389 ~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~----L~L~~n---~l~-----~~~~~~~~~l~~L~~L~L~~n~  456 (829)
                      .|+.|.+.+|.+.. |..++-.   .....-++.|+.    =.++..   .-+     .........+.+.+.|+++.-+
T Consensus       298 hL~~L~leGNPlrT-iRr~ii~---~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q  373 (565)
T KOG0472|consen  298 HLKFLALEGNPLRT-IRREIIS---KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ  373 (565)
T ss_pred             eeeehhhcCCchHH-HHHHHHc---ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence            67777777776541 1111110   000000000000    000000   000     0001111223344555555555


Q ss_pred             CCCccCccCCCCC---CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccC
Q 037427          457 FTGEIPKSLSNCS---RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL  533 (829)
Q Consensus       457 l~~~~~~~l~~l~---~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  533 (829)
                      ++ .+|+....-.   -.+..+++.|++. .+|..+..++.+.+.-+..|+..+.+|..++.+++|..|++++|.+. .+
T Consensus       374 lt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  374 LT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             cc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence            55 2332221111   1445555555554 44544444444333333333333355555555555555555555554 23


Q ss_pred             CCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCC
Q 037427          534 PSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL  612 (829)
Q Consensus       534 ~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  612 (829)
                      |..+ .+..|+.|+++.|+| ..+|.- +.....++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++
T Consensus       451 P~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             chhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence            3322 444555555555555 334432 333445555555666776666666777777777777777776 666677777


Q ss_pred             CCCCEEECcCCcCc
Q 037427          613 KQLRLIDLSNNNLF  626 (829)
Q Consensus       613 ~~L~~L~Ls~N~l~  626 (829)
                      .+|++|++++|+|.
T Consensus       528 tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR  541 (565)
T ss_pred             cceeEEEecCCccC
Confidence            77777777777775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=322.80  Aligned_cols=416  Identities=24%  Similarity=0.312  Sum_probs=235.1

Q ss_pred             EEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEccc
Q 037427          130 LLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN  209 (829)
Q Consensus       130 ~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  209 (829)
                      .+|.+...+. .+|..+..-..++.|++++|.+. ..| .+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSR   77 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccch
Confidence            3566776666 46666655556888888888765 334 345666666888888888776 5667788888888888888


Q ss_pred             ccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCC
Q 037427          210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLS  289 (829)
Q Consensus       210 n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  289 (829)
                      |.+. .+|.   ++.++.+|++|.|.+|.+. .+|             ..+..+++|+.|+++.|.+. .+|.- +..+.
T Consensus        78 n~i~-~vp~---s~~~~~~l~~lnL~~n~l~-~lP-------------~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt  137 (1081)
T KOG0618|consen   78 NYIR-SVPS---SCSNMRNLQYLNLKNNRLQ-SLP-------------ASISELKNLQYLDLSFNHFG-PIPLV-IEVLT  137 (1081)
T ss_pred             hhHh-hCch---hhhhhhcchhheeccchhh-cCc-------------hhHHhhhcccccccchhccC-CCchh-HHhhh
Confidence            8776 3454   6778888888888888766 333             33367777888888887775 34422 22333


Q ss_pred             CCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEE
Q 037427          290 KLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTL  369 (829)
Q Consensus       290 ~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L  369 (829)
                      .+                          +.+..++|.....    ++.. .++.+++..|.+.+.++.. ...+..  .|
T Consensus       138 ~~--------------------------~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~-i~~l~~--~l  183 (1081)
T KOG0618|consen  138 AE--------------------------EELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLID-IYNLTH--QL  183 (1081)
T ss_pred             HH--------------------------HHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcc-hhhhhe--ee
Confidence            32                          3333344411111    1111 1666777777777666654 233333  47


Q ss_pred             EccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcE
Q 037427          370 VLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLAR  449 (829)
Q Consensus       370 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  449 (829)
                      +|.+|.+.   ...+..+.+|+.+....|++..-.             ..-++|+.|+.++|.++...+.  ....+|++
T Consensus       184 dLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-------------~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~  245 (1081)
T KOG0618|consen  184 DLRYNEME---VLDLSNLANLEVLHCERNQLSELE-------------ISGPSLTALYADHNPLTTLDVH--PVPLNLQY  245 (1081)
T ss_pred             ecccchhh---hhhhhhccchhhhhhhhcccceEE-------------ecCcchheeeeccCcceeeccc--ccccccee
Confidence            77777766   234455666666666666654210             0124566666666666522211  12345666


Q ss_pred             EecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcC
Q 037427          450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNI  529 (829)
Q Consensus       450 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  529 (829)
                      +++++|+++ .+|+++..+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|.....++.|++|||..|++
T Consensus       246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc
Confidence            666666666 34466666666666666666664 55555555666666666666665 3444455566666666666666


Q ss_pred             cccCCCCC---CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC
Q 037427          530 SGSLPSCS---SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP  606 (829)
Q Consensus       530 ~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  606 (829)
                      . .+|..+   -...|+.++.+.|++......+ =...+.|+.|.+.+|.+++..-..+.+.+.|+.|+|++|++.....
T Consensus       323 ~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  323 P-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             c-ccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence            5 333322   1122445555555543221111 1233445555555555555444445555555555555555542223


Q ss_pred             cccCCCCCCCEEECcCCcCc
Q 037427          607 NQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       607 ~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      ..+.++..|+.|+||+|+++
T Consensus       401 s~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             HHHhchHHhHHHhcccchhh
Confidence            33445555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.4e-32  Score=285.66  Aligned_cols=362  Identities=22%  Similarity=0.313  Sum_probs=245.8

Q ss_pred             ccEEEccCCCCC-CCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEc
Q 037427          317 LESVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV  395 (829)
Q Consensus       317 L~~L~Ls~~~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  395 (829)
                      .+-.++++|.+. +.+|.....++.++.|.|...++. .+|.. ++.+.+|++|.+++|++.. +...+..++.|+.+.+
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence            455678888887 579999999999999999999998 89998 6789999999999999874 3456777888888888


Q ss_pred             cCCcccc-cCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEE
Q 037427          396 SKNFFQG-NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGL  474 (829)
Q Consensus       396 s~n~l~~-~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  474 (829)
                      ..|++.. .||+.+..         +..|+.|||++|++. +.|..+..-.++-.|+|++|+|..+....|-+++.|-.|
T Consensus        86 R~N~LKnsGiP~diF~---------l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFR---------LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hccccccCCCCchhcc---------cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            8887753 45666543         356777888888776 566677777777778888887774333455677777777


Q ss_pred             ECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCc-ccCCCCC-CCCcccEEEccCCcc
Q 037427          475 YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS-GSLPSCS-SHSTIQQVHLSKNML  552 (829)
Q Consensus       475 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l  552 (829)
                      ||++|++. .+|..+..+..|++|+|++|.+...--.-+..+++|++|.+++.+-+ ..+|... .+.+|..++++.|.+
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            88877776 56666777777777777777765332233345566666777766543 2344444 566666666666666


Q ss_pred             cCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc-cCCCC
Q 037427          553 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF-GQIPG  631 (829)
Q Consensus       553 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~  631 (829)
                      . .+|.. +.++++|+.|+||+|+|+ .+....+...+|+.|+++.|+++ .+|++++.++.|+.|.+.+|+++ .-||+
T Consensus       235 p-~vPec-ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  235 P-IVPEC-LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             C-cchHH-HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence            2 34433 566666666666666666 33333444456666666666666 66666666666666666666664 22454


Q ss_pred             CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427          632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG  711 (829)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~  711 (829)
                      .++.+.                                                     .|+.+..++|++. ..|+.+.
T Consensus       311 GIGKL~-----------------------------------------------------~Levf~aanN~LE-lVPEglc  336 (1255)
T KOG0444|consen  311 GIGKLI-----------------------------------------------------QLEVFHAANNKLE-LVPEGLC  336 (1255)
T ss_pred             chhhhh-----------------------------------------------------hhHHHHhhccccc-cCchhhh
Confidence            444433                                                     5556666666666 6666666


Q ss_pred             cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427          712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN  751 (829)
Q Consensus       712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  751 (829)
                      .+..|+.|.|++|++. ..|+++.-++.|+.|||..|.--
T Consensus       337 RC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            6666666666666666 56666666666666666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.6e-32  Score=283.81  Aligned_cols=344  Identities=26%  Similarity=0.329  Sum_probs=221.7

Q ss_pred             cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCc-CCCCCCCCCCCCCCEEEccCCcccccCchhhh
Q 037427          331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS-GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIG  409 (829)
Q Consensus       331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~  409 (829)
                      +|+.++.+.+|+.|.+++|++. .+-.. +..+|.|+.+.+..|++. .-+|..+..+..|+.||||+|+++ .+|..+.
T Consensus        47 vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE  123 (1255)
T KOG0444|consen   47 VPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE  123 (1255)
T ss_pred             ChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh
Confidence            3444455555555555555544 12111 234455555555555543 223444555555555555555555 4444443


Q ss_pred             hccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCccccc
Q 037427          410 VYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL  489 (829)
Q Consensus       410 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l  489 (829)
                      .         ..++-.|+|++|+|..+....|.+++.|-.|||++|++. .+|..+..+..|++|+|++|.+.-.--..+
T Consensus       124 ~---------AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL  193 (1255)
T KOG0444|consen  124 Y---------AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL  193 (1255)
T ss_pred             h---------hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence            2         135556666666665554445555666666666666665 455555666666666666665542222233


Q ss_pred             CCCCCCCEEEccCCccc-CCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCc
Q 037427          490 GNLSSLNDIMMASNHLQ-GPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSI  567 (829)
Q Consensus       490 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L  567 (829)
                      ..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|.+. .+++|+.|+|++|+++. +... .....+|
T Consensus       194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~-~~~W~~l  270 (1255)
T KOG0444|consen  194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMT-EGEWENL  270 (1255)
T ss_pred             ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eecc-HHHHhhh
Confidence            34555566666655432 235566666666666666666665 555555 66666677777766632 2222 4455789


Q ss_pred             cEEEccCCcCCCcchhhhhcCCCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       568 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      ++|++|.|+++ .+|+++.++++|+.|.+.+|+++ .-+|+.++.+.+|+++..++|++. ..|..+..+.         
T Consensus       271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~---------  339 (1255)
T KOG0444|consen  271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV---------  339 (1255)
T ss_pred             hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH---------
Confidence            99999999998 88999999999999999999886 347999999999999999999986 6676665554         


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                                  .|+.|.|++|++. ..|+.|.-++.|+.||+..|.-
T Consensus       340 --------------------------------------------kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  340 --------------------------------------------KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             --------------------------------------------HHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence                                                        7889999999998 8999999999999999999987


Q ss_pred             CCCccccccccccCCeeecC
Q 037427          727 TGVIPVSFSNLNQVESLDVS  746 (829)
Q Consensus       727 ~~~~p~~l~~l~~L~~LdLs  746 (829)
                      .-..|.-=..-++|+.-++.
T Consensus       375 LVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  375 LVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             ccCCCCcchhhhcceeeecc
Confidence            75555432222455554443

>PLN03210 Resistant to P

Probab=99.90  E-value=2.5e-22  Score=246.63  Aligned_cols=342  Identities=20%  Similarity=0.220  Sum_probs=254.6

Q ss_pred             cChhhhCCCCcCEEEcCCCCC------CCCCchHHhhcC-CCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCccccc
Q 037427          331 FPKFLYNQHDLELVDFSDSNL------KGEFPNWLLKNN-PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN  403 (829)
Q Consensus       331 ~p~~l~~~~~L~~L~Ls~n~l------~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  403 (829)
                      .+..|..+++|+.|.+..+..      ...+|.. +..+ ++|+.|.+.++.+.. +|..+ ...+|+.|++.+|.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-c
Confidence            345678888999988866532      2345665 3344 468999998887764 34444 4678899999988876 3


Q ss_pred             CchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCC
Q 037427          404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG  483 (829)
Q Consensus       404 ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  483 (829)
                      ++..+.         .+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|....
T Consensus       626 L~~~~~---------~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        626 LWDGVH---------SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             cccccc---------cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence            443332         357889999988765555553 6778899999999887767888888889999999999876555


Q ss_pred             CcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccC------cCC
Q 037427          484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYG------PLK  557 (829)
Q Consensus       484 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~------~~~  557 (829)
                      .+|..+ ++++|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|....+++|+.|.+.++....      .++
T Consensus       696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccc
Confidence            777655 7888999999988766566542   467888999999886 56776677888888887643211      111


Q ss_pred             ccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCC
Q 037427          558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS  637 (829)
Q Consensus       558 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  637 (829)
                      ...+...++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..     
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----  844 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----  844 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----
Confidence            1112345789999999998888889899999999999999886555777765 7889999999988654444421     


Q ss_pred             ccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCC
Q 037427          638 LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR  717 (829)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  717 (829)
                                                                         .++|+.|+|++|.++ .+|..+..+++|+
T Consensus       845 ---------------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~  872 (1153)
T PLN03210        845 ---------------------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLS  872 (1153)
T ss_pred             ---------------------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence                                                               126788999999998 7899999999999


Q ss_pred             EEECCCCCCCCCccccccccccCCeeecCCCc
Q 037427          718 ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNN  749 (829)
Q Consensus       718 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  749 (829)
                      .|+|++|+-...+|..+..+++|+.+++++|.
T Consensus       873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99999854444678888899999999999885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=3.2e-22  Score=245.69  Aligned_cols=342  Identities=20%  Similarity=0.214  Sum_probs=265.6

Q ss_pred             CchHHhhcCCCCCEEEccCCcC------cCCCCCCCCCC-CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEE
Q 037427          355 FPNWLLKNNPNLSTLVLRNNSL------SGPFQTPIQPH-WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLV  427 (829)
Q Consensus       355 ~p~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l-~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~  427 (829)
                      +....|.++++|+.|.+..+..      ...+|..+..+ .+|+.|++.++.+. .+|..+.          ..+|+.|+
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~----------~~~L~~L~  617 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR----------PENLVKLQ  617 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC----------ccCCcEEE
Confidence            4445578899999999976643      22345555554 46999999998875 5565432          35899999


Q ss_pred             cccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccC
Q 037427          428 LSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG  507 (829)
Q Consensus       428 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  507 (829)
                      +.+|.+.. ++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..++++++|+.|++++|...+
T Consensus       618 L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        618 MQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             CcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence            99998874 566677899999999998876556774 7888999999999988777889999999999999999987666


Q ss_pred             CChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC-------Cc
Q 037427          508 PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS-------GN  580 (829)
Q Consensus       508 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~-------~~  580 (829)
                      .+|..+ ++++|+.|++++|...+.+|..  ..+|+.|++++|.+ ..+|..  ..+++|+.|++.++...       ..
T Consensus       696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN--LRLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             ccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc--ccccccccccccccchhhcccccccc
Confidence            777655 7899999999999776666653  46789999999987 456654  35788888888774321       12


Q ss_pred             chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427          581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY  660 (829)
Q Consensus       581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (829)
                      .+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|...                           
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---------------------------  822 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---------------------------  822 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---------------------------
Confidence            22223345789999999998877899999999999999999987655666432                           


Q ss_pred             ecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccC
Q 037427          661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV  740 (829)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  740 (829)
                                                 .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|
T Consensus       823 ---------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L  871 (1153)
T PLN03210        823 ---------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL  871 (1153)
T ss_pred             ---------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence                                       1348899999998766566653   368999999999999 789999999999


Q ss_pred             CeeecCCCcCcccCCcccccCCCCcEEeccCCc
Q 037427          741 ESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN  773 (829)
Q Consensus       741 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  773 (829)
                      +.|+|++|+--..+|..+..+++|+.++++++.
T Consensus       872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999999954444688888899999999998873

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.4e-21  Score=222.04  Aligned_cols=226  Identities=26%  Similarity=0.323  Sum_probs=121.8

Q ss_pred             cCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeC
Q 037427          445 RKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL  524 (829)
Q Consensus       445 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  524 (829)
                      ++|++|++++|+++ .+|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|+++. +|.   .+++|+.|++
T Consensus       242 ~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL  309 (788)
T PRK15387        242 PELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSV  309 (788)
T ss_pred             CCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence            44555555555554 23321   234555555555554 23321   1345555555555552 232   1345666666


Q ss_pred             CCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427          525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE  604 (829)
Q Consensus       525 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  604 (829)
                      ++|++++ +|..  ...|+.|++++|.+.+ +|..    ..+|+.|++++|++++ +|..   ..+|+.|++++|+++ .
T Consensus       310 S~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~  376 (788)
T PRK15387        310 SDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S  376 (788)
T ss_pred             CCCcccc-CCCC--cccccccccccCcccc-cccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-c
Confidence            6666553 2321  2345555666665532 3321    1356667777776663 3322   235666677777766 3


Q ss_pred             CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427          605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY  684 (829)
Q Consensus       605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (829)
                      +|..   ..+|+.|++++|++++ +|...                                                   
T Consensus       377 LP~l---~~~L~~LdLs~N~Lt~-LP~l~---------------------------------------------------  401 (788)
T PRK15387        377 LPAL---PSGLKELIVSGNRLTS-LPVLP---------------------------------------------------  401 (788)
T ss_pred             Cccc---ccccceEEecCCcccC-CCCcc---------------------------------------------------
Confidence            4432   2456677777777653 33211                                                   


Q ss_pred             cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccccc
Q 037427          685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE  760 (829)
Q Consensus       685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  760 (829)
                           +.|+.|++++|+++ .+|...   .+|+.|++++|+|+ .+|+.+.++++|+.|+|++|++++.+|..+..
T Consensus       402 -----s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        402 -----SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             -----cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence                 14566777777776 355432   35666777777776 56777777777777777777777766665533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.7e-21  Score=221.35  Aligned_cols=263  Identities=25%  Similarity=0.294  Sum_probs=205.0

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.   .+++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            4567888888887 4555543  47889999999988 4564   2578999999999998 45643   4689999999


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  581 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  581 (829)
                      +|.+.. +|..   ..+|+.|++++|+++ .+|.  .+++|+.|++++|++.+ +|..    ..+|+.|++++|++++ +
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCccc-cccc--cccccceeECCCCcccc-CCCC----cccccccccccCcccc-c
Confidence            999874 4443   367889999999998 4554  34789999999999965 4432    2468889999999985 4


Q ss_pred             hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcccee
Q 037427          582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYF  661 (829)
Q Consensus       582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (829)
                      |..   ..+|++|+|++|+++ .+|..   .++|+.|++++|++++ +|...                            
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l~----------------------------  381 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPALP----------------------------  381 (788)
T ss_pred             ccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccccc----------------------------
Confidence            532   247999999999998 45643   3578889999999873 45311                            


Q ss_pred             cCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCC
Q 037427          662 VGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVE  741 (829)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  741 (829)
                                                  ..|+.|++++|+|+ .+|..   .++|+.|++++|++++ +|...   .+|+
T Consensus       382 ----------------------------~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~  425 (788)
T PRK15387        382 ----------------------------SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLL  425 (788)
T ss_pred             ----------------------------cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhh
Confidence                                        26788999999999 46654   3689999999999995 67543   5788


Q ss_pred             eeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          742 SLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       742 ~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      .|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|..
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            9999999998 78999999999999999999999998763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.7e-24  Score=215.20  Aligned_cols=388  Identities=18%  Similarity=0.180  Sum_probs=206.6

Q ss_pred             CcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccC-CcccccCchhhhhcccccccc
Q 037427          340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSK-NFFQGNIPLEIGVYFPSHLAM  418 (829)
Q Consensus       340 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~ip~~~~~~l~~~~~~  418 (829)
                      .-..++|..|+|+ .+|+..|+.+++|++|+|++|.|+.+.|.+|..++++..|-+.+ |+|+.         ++...|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~---------l~k~~F~  137 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD---------LPKGAFG  137 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh---------hhhhHhh
Confidence            4577888888887 78887788888888888888888888888888887777666655 77762         4455555


Q ss_pred             CCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCC------------Ccc
Q 037427          419 GCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG------------NIP  486 (829)
Q Consensus       419 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p  486 (829)
                      ++.+|+.|.+.-|++.....+.|..+++|..|.+..|.+..+.-..|..+..++.+.+..|.+..            ..|
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~  217 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP  217 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence            66777777777777777777777777777777777777763333467777777777777776321            111


Q ss_pred             cccCCCCCCCEEEccCCcccCCChhhhhC-CCCCCEEeCCCCcCcccCCC-CC-CCCcccEEEccCCcccCcCCccccCC
Q 037427          487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQ-LNYLEILDLSENNISGSLPS-CS-SHSTIQQVHLSKNMLYGPLKYGTFFN  563 (829)
Q Consensus       487 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~~~~~l~~  563 (829)
                      ..+++..-..-..+.+.++..+.+..|.. +..+..=-.+.+...+..|. ++ .+++|++|+|++|++++ +..++|.+
T Consensus       218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~  296 (498)
T KOG4237|consen  218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEG  296 (498)
T ss_pred             hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcc
Confidence            22222222222233333333222222211 11111111111111112221 12 44444444444444432 22222444


Q ss_pred             CCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCC
Q 037427          564 RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD  643 (829)
Q Consensus       564 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  643 (829)
                      ...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|++.                 
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~-----------------  359 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN-----------------  359 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc-----------------
Confidence            444444444444444333344444444444444444444444444444444444444444431                 


Q ss_pred             CCCCCCCCCCCCCccce----ecCCCc--------cccccceeeecccce-ee-------------ecCCCCCCcc-eEE
Q 037427          644 NVGSSAPTFNPNRRTTY----FVGPSI--------LEKEESIMFTTKEIS-FS-------------YKGKPLNKMY-GVD  696 (829)
Q Consensus       644 ~~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~~~~~~~~-~~-------------~~~~~l~~L~-~L~  696 (829)
                                ...+-.|    +++...        ......+++.....+ +.             +.-...+-+. ...
T Consensus       360 ----------CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR  429 (498)
T KOG4237|consen  360 ----------CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR  429 (498)
T ss_pred             ----------CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence                      1111111    111100        001111111110000 00             0001112222 233


Q ss_pred             cCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCC
Q 037427          697 LSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN  772 (829)
Q Consensus       697 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  772 (829)
                      .|+..+. .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+|+|+++..---.|.++++|.+|-+|||
T Consensus       430 cSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  430 CSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            4444444 4554433  24567889999999 66766  56788 8999999998666677889999999999887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.5e-24  Score=211.61  Aligned_cols=397  Identities=21%  Similarity=0.207  Sum_probs=278.7

Q ss_pred             cCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccC-CcCcCCCCCCCCCCCCCCEE
Q 037427          315 FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN-NSLSGPFQTPIQPHWHLDAL  393 (829)
Q Consensus       315 ~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  393 (829)
                      ..-.+++|..|.|+...|..|..+++|+.||||+|.|+..-|. .|++++++.+|.+.+ |+|+......|..+..++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            4678999999999999999999999999999999999944454 488999988887776 99999888899999999999


Q ss_pred             EccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCC------------Ccc
Q 037427          394 HVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT------------GEI  461 (829)
Q Consensus       394 ~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~  461 (829)
                      .+.-|++.-.         +...+..++++..|.+.+|.+....-..|..+..++.+.+..|.+.            ...
T Consensus       146 llNan~i~Ci---------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  146 LLNANHINCI---------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hcChhhhcch---------hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            9999988742         2333445678999999999998666668888999999999998842            122


Q ss_pred             CccCCCCCCCcEEECCCCcCCCCcccccCC-CCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCcccCCCCC-C
Q 037427          462 PKSLSNCSRLEGLYMSDNNLYGNIPARLGN-LSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISGSLPSCS-S  538 (829)
Q Consensus       462 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~  538 (829)
                      |..+++.....-..+.+.++..+-+..|.. +.++..=..+.+...++.| ..|..+++|+.|++++|++++.-+..+ .
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            333444444444455555555433333322 1222222233444444544 568999999999999999998888888 8


Q ss_pred             CCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc-----CCcccC---
Q 037427          539 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE-----VPNQLC---  610 (829)
Q Consensus       539 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~---  610 (829)
                      ...++.|.|..|++ ..+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|.+.-.     .-+++.   
T Consensus       297 ~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  297 AAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             hhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence            89999999999999 456666799999999999999999999999999999999999998877510     001110   


Q ss_pred             --------CCCCCCEEECcCCcCccC---CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccc
Q 037427          611 --------GLKQLRLIDLSNNNLFGQ---IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE  679 (829)
Q Consensus       611 --------~l~~L~~L~Ls~N~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (829)
                              .-..++.+++++..+...   .|+..+-..       ....++.-..              ....+....+.
T Consensus       376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~-------s~~cP~~c~c--------------~~tVvRcSnk~  434 (498)
T KOG4237|consen  376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT-------SSPCPPPCTC--------------LDTVVRCSNKL  434 (498)
T ss_pred             CCCCCCCCCCchhccccchhccccccccCCccccCCCC-------CCCCCCCcch--------------hhhhHhhcccc
Confidence                    112344555554443211   111111000       0000000000              00001111111


Q ss_pred             ceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCC
Q 037427          680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN  748 (829)
Q Consensus       680 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  748 (829)
                      ... +........+++++.+|.++ .+|.+  .+.+| .+|+|+|+++...-..|.++++|.+|-||+|
T Consensus       435 lk~-lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  435 LKL-LPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhh-cCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            111 11122335678999999999 78887  67788 9999999999888889999999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.6e-19  Score=204.03  Aligned_cols=246  Identities=26%  Similarity=0.381  Sum_probs=157.5

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      +...|+++++.++. +|..+  .+.|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            56788888888874 34433  357888888888888 4565443  57888888888887 4565443  468888888


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  581 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  581 (829)
                      +|++. .+|..+.  .+|+.|++++|+++ .+|..+ .++|+.|++++|++.+ +|.. +  .++|+.|++++|+++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~-l--p~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL-PEELRYLSVYDNSIRT-LPAH-L--PSGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-cccccc-CCCCcEEECCCCcccc-Cccc-c--hhhHHHHHhcCCcccc-C
Confidence            88887 5565553  47888888888887 455433 2467777777777753 4432 2  1457777777777764 3


Q ss_pred             hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcccee
Q 037427          582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYF  661 (829)
Q Consensus       582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (829)
                      |..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+                            
T Consensus       320 P~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l----------------------------  365 (754)
T PRK15370        320 PETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL----------------------------  365 (754)
T ss_pred             Ccccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh----------------------------
Confidence            43332  46777777777776 3555443  56777777777765 233211                            


Q ss_pred             cCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccc----ccc
Q 037427          662 VGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF----SNL  737 (829)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l  737 (829)
                                                 .++|+.|++++|+++ .+|..+.  ..|+.|++++|+++ .+|..+    +.+
T Consensus       366 ---------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~  414 (754)
T PRK15370        366 ---------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG  414 (754)
T ss_pred             ---------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence                                       115666777777776 4555543  25667777777776 444433    333


Q ss_pred             ccCCeeecCCCcCc
Q 037427          738 NQVESLDVSHNNLN  751 (829)
Q Consensus       738 ~~L~~LdLs~N~l~  751 (829)
                      +++..|++.+|+++
T Consensus       415 ~~l~~L~L~~Npls  428 (754)
T PRK15370        415 PQPTRIIVEYNPFS  428 (754)
T ss_pred             CCccEEEeeCCCcc
Confidence            56667777777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.7e-19  Score=205.12  Aligned_cols=250  Identities=21%  Similarity=0.334  Sum_probs=147.5

Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      +|++|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            4555555555554 2333322  24555555555555 3444332  35566666666555 2344332  356666666


Q ss_pred             CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccC
Q 037427          526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV  605 (829)
Q Consensus       526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  605 (829)
                      +|++++ +|..+ .++|+.|++++|.+.. +|.. +  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+
T Consensus       292 ~N~Lt~-LP~~l-p~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        292 DNSIRT-LPAHL-PSGITHLNVQSNSLTA-LPET-L--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VL  361 (754)
T ss_pred             CCcccc-Ccccc-hhhHHHHHhcCCcccc-CCcc-c--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cC
Confidence            666653 33322 2356677777777643 4432 2  2578888888888874 555553  68888888888887 56


Q ss_pred             CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427          606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK  685 (829)
Q Consensus       606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (829)
                      |..+.  ++|+.|++++|+++ .+|..+.                                                   
T Consensus       362 P~~lp--~~L~~LdLs~N~Lt-~LP~~l~---------------------------------------------------  387 (754)
T PRK15370        362 PETLP--PTITTLDVSRNALT-NLPENLP---------------------------------------------------  387 (754)
T ss_pred             Chhhc--CCcCEEECCCCcCC-CCCHhHH---------------------------------------------------
Confidence            66553  57888999998887 3443221                                                   


Q ss_pred             CCCCCCcceEEcCCCcCCCCCCccc----ccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc-cCCccccc
Q 037427          686 GKPLNKMYGVDLSCNKLTGEIPPQI----GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG-KIPPQLVE  760 (829)
Q Consensus       686 ~~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~-~ip~~l~~  760 (829)
                          ..|+.|++++|+++ .+|..+    +.++.+..|++.+|.++.      ..+.+|+.| ++.+...| .++..+..
T Consensus       388 ----~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~  455 (754)
T PRK15370        388 ----AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGD  455 (754)
T ss_pred             ----HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccc
Confidence                15677889999888 556544    445788899999999882      234455555 44555554 34444555


Q ss_pred             CCCCcEEeccCCcceeecCC
Q 037427          761 LNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       761 l~~L~~L~ls~N~l~g~ip~  780 (829)
                      +..++....-.+.+.+-+|.
T Consensus       456 ~~~l~~~~~l~~a~~~Wl~~  475 (754)
T PRK15370        456 FSIVRVTRPLHQAVQGWLTN  475 (754)
T ss_pred             cccccccchHHHHHhccCCc
Confidence            55555444445555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.6e-19  Score=193.21  Aligned_cols=83  Identities=19%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             CcceEEcCCCcCCCCCCccccc-----CCCCCEEECCCCCCCC----CccccccccccCCeeecCCCcCccc----CCcc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGK-----LTNIRALNFSHNNLTG----VIPVSFSNLNQVESLDVSHNNLNGK----IPPQ  757 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~----ip~~  757 (829)
                      +|+.|++++|.+++..+..+..     .+.|+.|++++|.++.    .++..+..+++|+.+|+++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            4555555555555422222211     2566666666666652    2233445556667777777776633    3333


Q ss_pred             cccC-CCCcEEeccCCc
Q 037427          758 LVEL-NALVVFSVAHNN  773 (829)
Q Consensus       758 l~~l-~~L~~L~ls~N~  773 (829)
                      +... +.|+++++.+|+
T Consensus       302 ~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         302 LLEPGNELESLWVKDDS  318 (319)
T ss_pred             HhhcCCchhhcccCCCC
Confidence            3333 566666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=6.9e-18  Score=180.61  Aligned_cols=280  Identities=21%  Similarity=0.257  Sum_probs=139.7

Q ss_pred             EEEccCCCCC-CCcChhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcC------CCCCCCCCC
Q 037427          319 SVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSG------PFQTPIQPH  387 (829)
Q Consensus       319 ~L~Ls~~~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l  387 (829)
                      .|+|..+.+. ...+..+..+..|+.++++++.+++.    ++.. +...+.+++++++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4667777766 44556667777788888888887532    3333 4456678888887776652      111233445


Q ss_pred             CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEccccccccc----Cccccccc-cCCcEEecccccCCCc--
Q 037427          388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ----LFSKKNYL-RKLARLHLDANYFTGE--  460 (829)
Q Consensus       388 ~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~--  460 (829)
                      ++|+.|++++|.+.+..+..+.....     . ++|++|++++|.+++.    +...+..+ ++|+.|++++|.+++.  
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~-----~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLR-----S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhc-----c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            56666666666665444333332110     1 2356666666655421    11222333 4555555555555421  


Q ss_pred             --cCccCCCCCCCcEEECCCCcCCCC----cccccCCCCCCCEEEccCCcccCCC----hhhhhCCCCCCEEeCCCCcCc
Q 037427          461 --IPKSLSNCSRLEGLYMSDNNLYGN----IPARLGNLSSLNDIMMASNHLQGPI----PLEFCQLNYLEILDLSENNIS  530 (829)
Q Consensus       461 --~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~  530 (829)
                        ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..    ...+..+++|++|++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              122333444555555555554421    1122333344555555544443221    122233344444444444433


Q ss_pred             ccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC----cchhhhhcCCCCCEEEccCCccccc--
Q 037427          531 GSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG----NIPYWIERLIRLRYLILANNNLEGE--  604 (829)
Q Consensus       531 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~--  604 (829)
                      +....                   .+........+.|+.|++++|.+++    .+...+..+++|+++++++|.++..  
T Consensus       235 ~~~~~-------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         235 DAGAA-------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             hHHHH-------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            21000                   0000001123567777777777652    2233445566777777777777643  


Q ss_pred             --CCcccCCC-CCCCEEECcCCc
Q 037427          605 --VPNQLCGL-KQLRLIDLSNNN  624 (829)
Q Consensus       605 --~~~~l~~l-~~L~~L~Ls~N~  624 (829)
                        ....+... +.|+.+|+.+|.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCC
Confidence              23333334 567777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.4e-18  Score=153.51  Aligned_cols=188  Identities=28%  Similarity=0.444  Sum_probs=151.5

Q ss_pred             CCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCC
Q 037427          533 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL  612 (829)
Q Consensus       533 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  612 (829)
                      +|..+.+..++.|-+++|+++ .+|.. +..+.+|++|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            444555666677777777774 45555 788999999999999998 67888999999999999999997 889999999


Q ss_pred             CCCCEEECcCCcCcc-CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCC
Q 037427          613 KQLRLIDLSNNNLFG-QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNK  691 (829)
Q Consensus       613 ~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  691 (829)
                      +.|++||+.+|++.. .+|+.|..++                                                     .
T Consensus       102 p~levldltynnl~e~~lpgnff~m~-----------------------------------------------------t  128 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMT-----------------------------------------------------T  128 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHH-----------------------------------------------------H
Confidence            999999999999863 3454443322                                                     6


Q ss_pred             cceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCC---CcEEe
Q 037427          692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA---LVVFS  768 (829)
Q Consensus       692 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~---L~~L~  768 (829)
                      |+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.+++|+.|.+.+|+++ .+|+.++++.-   =+++.
T Consensus       129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r  205 (264)
T KOG0617|consen  129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMR  205 (264)
T ss_pred             HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHh
Confidence            778899999998 88999999999999999999999 78999999999999999999998 67777766542   24566


Q ss_pred             ccCCcceeecCC
Q 037427          769 VAHNNLSAAERN  780 (829)
Q Consensus       769 ls~N~l~g~ip~  780 (829)
                      +.+|+...+|.+
T Consensus       206 ~E~NPwv~pIae  217 (264)
T KOG0617|consen  206 MEENPWVNPIAE  217 (264)
T ss_pred             hhhCCCCChHHH
Confidence            777777655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=6.1e-18  Score=149.43  Aligned_cols=167  Identities=27%  Similarity=0.444  Sum_probs=151.2

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  640 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  640 (829)
                      +.+++.++.|.+++|+++ .+|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.+.   
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p---  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP---  102 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence            567788999999999999 56667999999999999999998 88999999999999999999986 6787777655   


Q ss_pred             CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC-CCCcccccCCCCCEE
Q 037427          641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRAL  719 (829)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L  719 (829)
                                                                        .|+.|||++|++.. ..|..|-.++.|+.|
T Consensus       103 --------------------------------------------------~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen  103 --------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             --------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHHH
Confidence                                                              78899999999974 589999999999999


Q ss_pred             ECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCC
Q 037427          720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYC  785 (829)
Q Consensus       720 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~  785 (829)
                      +|++|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|+|+-..|+-++..
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~  196 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD  196 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence            99999999 88999999999999999999998 789999999999999999999999999876553

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=1e-13  Score=159.10  Aligned_cols=153  Identities=29%  Similarity=0.460  Sum_probs=98.9

Q ss_pred             CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCC----ccccceEecCC--CCcEEEEEcCCCcccccccccccCcc
Q 037427           19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDC----CKWEGVECNTS--TGRVKALYLSSKRQFLYSTAGQLNAS   92 (829)
Q Consensus        19 ~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~----c~w~gv~c~~~--~~~v~~L~L~~~~~~~~~~~~~~~~~   92 (829)
                      ..+.++|.+||+++|+++..+.  ..+|.+    ..|    |.|.||.|...  .+.                       
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~-----------------------  417 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--RFGWNG----DPCVPQQHPWSGADCQFDSTKGK-----------------------  417 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--cCCCCC----CCCCCcccccccceeeccCCCCc-----------------------
Confidence            3566789999999999986432  248963    234    37999999531  110                       


Q ss_pred             cccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccc
Q 037427           93 LLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETL  172 (829)
Q Consensus        93 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l  172 (829)
                           ..++.|+|++|.+.+.++..    +..+++|++|+|++|.+.+.+|..++.+++|++|+|++|.++|.+|  ..+
T Consensus       418 -----~~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP--~~l  486 (623)
T PLN03150        418 -----WFIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP--ESL  486 (623)
T ss_pred             -----eEEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc--hHH
Confidence                 01334444555555555543    6677777777777777777777777777777777777777777766  566


Q ss_pred             cCCCCCCEEecCCCCCCchhhHhhhcC-CCCCEEEccccc
Q 037427          173 DNFTNLEDLTLDYSSLHISILKSIAAF-TSLKRLSIQNGR  211 (829)
Q Consensus       173 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~  211 (829)
                      +++++|++|+|++|.+++.+|..++.+ .++..+++.+|.
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            667777777777776666666666543 344555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1.8e-13  Score=143.39  Aligned_cols=171  Identities=30%  Similarity=0.448  Sum_probs=104.0

Q ss_pred             EEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCC
Q 037427          544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN  623 (829)
Q Consensus       544 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  623 (829)
                      ..+++.|++ ..+|.. +..+..|+.+.+..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.++ |+.|-+++|
T Consensus        79 ~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            344444444 334444 445555666666666665 55666666666666666666665 5555555554 566666666


Q ss_pred             cCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCC
Q 037427          624 NLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT  703 (829)
Q Consensus       624 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  703 (829)
                      +++ .+|..++...                                                     .|..||.|.|.+.
T Consensus       154 kl~-~lp~~ig~~~-----------------------------------------------------tl~~ld~s~nei~  179 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLP-----------------------------------------------------TLAHLDVSKNEIQ  179 (722)
T ss_pred             ccc-cCCcccccch-----------------------------------------------------hHHHhhhhhhhhh
Confidence            665 4454444211                                                     4556666666666


Q ss_pred             CCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427          704 GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA  777 (829)
Q Consensus       704 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  777 (829)
                       .+|..++.+.+|+.|+++.|++. ..|+.+..| .|..||+|+|+++ .||-.|.++..|++|-|.+|+|..+
T Consensus       180 -slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  180 -SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             -hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence             56666677777777777777776 344455533 4666777777776 5677777777777777777776644

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=7.6e-12  Score=137.78  Aligned_cols=199  Identities=31%  Similarity=0.521  Sum_probs=121.5

Q ss_pred             EEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCC-cccEEEccCCcccCcCCccccCCCCCccEEEccCC
Q 037427          497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHS-TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN  575 (829)
Q Consensus       497 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n  575 (829)
                      .+++..|.+...+ ..+..++.++.|++.+|.++...+...... +|+.|++++|.+. .++.. +..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCc
Confidence            5777777764332 234455778888888888874333333442 6777777777773 33322 567777777777777


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCC
Q 037427          576 SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPN  655 (829)
Q Consensus       576 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  655 (829)
                      +++ .+|......+.|+.|++++|++. .+|........|++|++++|++. ..+..+..                    
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~--------------------  230 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN--------------------  230 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh--------------------
Confidence            776 34444445667777777777776 55555445555777777777422 12222211                    


Q ss_pred             CccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccc
Q 037427          656 RRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS  735 (829)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  735 (829)
                                                       +..+..+.+++|++. .++..++.+++++.|++++|.++...+  ++
T Consensus       231 ---------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~  274 (394)
T COG4886         231 ---------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LG  274 (394)
T ss_pred             ---------------------------------cccccccccCCceee-eccchhccccccceecccccccccccc--cc
Confidence                                             224455556667666 335666677777777777777774433  66


Q ss_pred             ccccCCeeecCCCcCcccCCcc
Q 037427          736 NLNQVESLDVSHNNLNGKIPPQ  757 (829)
Q Consensus       736 ~l~~L~~LdLs~N~l~~~ip~~  757 (829)
                      .+.+++.||+++|.++...|..
T Consensus       275 ~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         275 SLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccCccCEEeccCccccccchhh
Confidence            7777777777777776555433

>PLN03150 hypothetical protein; Provisional

Probab=99.18  E-value=3.8e-11  Score=138.11  Aligned_cols=113  Identities=27%  Similarity=0.474  Sum_probs=90.1

Q ss_pred             CCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcc
Q 037427          614 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY  693 (829)
Q Consensus       614 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  693 (829)
                      .++.|+|++|.+.|.+|..+..+.                                                     +|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            367788888888888887666554                                                     788


Q ss_pred             eEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC-CCCcEEeccCC
Q 037427          694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL-NALVVFSVAHN  772 (829)
Q Consensus       694 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N  772 (829)
                      .|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+++++|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            88888888888888888888888888888888888888888888888888888888888888877653 45677888888


Q ss_pred             cceeecC
Q 037427          773 NLSAAER  779 (829)
Q Consensus       773 ~l~g~ip  779 (829)
                      ...+.+|
T Consensus       526 ~~lc~~p  532 (623)
T PLN03150        526 AGLCGIP  532 (623)
T ss_pred             ccccCCC
Confidence            6444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=4.7e-11  Score=131.50  Aligned_cols=201  Identities=34%  Similarity=0.425  Sum_probs=127.1

Q ss_pred             EEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCC-CCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427          473 GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN-YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM  551 (829)
Q Consensus       473 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  551 (829)
                      .+++..|.+... ...+..++.++.|++.+|.++ .++....... +|+.|++++|++.........++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            567777766422 223445567777777777777 3444455553 7777888888776322233467777888888877


Q ss_pred             ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427          552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                      +. .++.. ....+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++... +.
T Consensus       175 l~-~l~~~-~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         175 LS-DLPKL-LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hh-hhhhh-hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence            74 34432 236677777888888777 44544444556777777777543 4556667777777777777776421 22


Q ss_pred             CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427          632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG  711 (829)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~  711 (829)
                      .++.                                                     ++.++.|++++|.++ .++. ++
T Consensus       250 ~~~~-----------------------------------------------------l~~l~~L~~s~n~i~-~i~~-~~  274 (394)
T COG4886         250 SIGN-----------------------------------------------------LSNLETLDLSNNQIS-SISS-LG  274 (394)
T ss_pred             hhcc-----------------------------------------------------ccccceecccccccc-cccc-cc
Confidence            2222                                                     225677778888777 4444 77


Q ss_pred             cCCCCCEEECCCCCCCCCcccccc
Q 037427          712 KLTNIRALNFSHNNLTGVIPVSFS  735 (829)
Q Consensus       712 ~l~~L~~L~Ls~N~l~~~~p~~l~  735 (829)
                      .+.+++.|++++|.++...|....
T Consensus       275 ~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         275 SLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccCccCEEeccCccccccchhhhc
Confidence            777788888888877766665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=6.8e-13  Score=139.19  Aligned_cols=191  Identities=26%  Similarity=0.399  Sum_probs=102.7

Q ss_pred             cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427          472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM  551 (829)
Q Consensus       472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  551 (829)
                      ...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++||++.|+++ ..|.....--|+.|.+++|+
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCc
Confidence            44566666665 55555555566666666666665 55666666666666666666665 33332212223444444444


Q ss_pred             ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427          552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                      + +.+|.+ ++....|..||.+.|.+.                         .+|..++++.+|+.|.+..|++. .+|.
T Consensus       155 l-~~lp~~-ig~~~tl~~ld~s~nei~-------------------------slpsql~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  155 L-TSLPEE-IGLLPTLAHLDVSKNEIQ-------------------------SLPSQLGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             c-ccCCcc-cccchhHHHhhhhhhhhh-------------------------hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence            4 233333 344444555555555444                         44444444555555555555443 2232


Q ss_pred             CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427          632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG  711 (829)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~  711 (829)
                      .+..+                                                      .|..||+|+|+++ .||-.|.
T Consensus       207 El~~L------------------------------------------------------pLi~lDfScNkis-~iPv~fr  231 (722)
T KOG0532|consen  207 ELCSL------------------------------------------------------PLIRLDFSCNKIS-YLPVDFR  231 (722)
T ss_pred             HHhCC------------------------------------------------------ceeeeecccCcee-ecchhhh
Confidence            22222                                                      3556777777776 6777777


Q ss_pred             cCCCCCEEECCCCCCCCCcccccc---ccccCCeeecCCCc
Q 037427          712 KLTNIRALNFSHNNLTGVIPVSFS---NLNQVESLDVSHNN  749 (829)
Q Consensus       712 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~LdLs~N~  749 (829)
                      +|+.|++|-|.+|.++ ..|..+.   ...--++|+..-++
T Consensus       232 ~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            7777777777777777 4554442   22233555555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=6.1e-12  Score=121.71  Aligned_cols=85  Identities=25%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccC-CcccccCCCCcEEec
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI-PPQLVELNALVVFSV  769 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~l  769 (829)
                      +|+.||||+|.++ .+-.+-..+-+.+.|+|+.|.|...  ++++++-+|..||+++|+|...- -..+++++.|+++.+
T Consensus       330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            3444444444444 2333333444555555555555433  34555555555555555554211 134555555666666


Q ss_pred             cCCcceeec
Q 037427          770 AHNNLSAAE  778 (829)
Q Consensus       770 s~N~l~g~i  778 (829)
                      .+|+|++.+
T Consensus       407 ~~NPl~~~v  415 (490)
T KOG1259|consen  407 TGNPLAGSV  415 (490)
T ss_pred             cCCCccccc
Confidence            666665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.2e-11  Score=123.18  Aligned_cols=138  Identities=24%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             CCCCCCcEEECCCCcCCCCcc-cccCCCCCCCEEEccCCcccCCC--hhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcc
Q 037427          466 SNCSRLEGLYMSDNNLYGNIP-ARLGNLSSLNDIMMASNHLQGPI--PLEFCQLNYLEILDLSENNISGSLPSCSSHSTI  542 (829)
Q Consensus       466 ~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  542 (829)
                      +++.+|+.+.|.++.+..... .....+++++.|+|+.|-+..-.  .+....+++|+.|+++.|++........     
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-----  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-----  192 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence            456778888888877652211 35566777777777777665322  2334467777777777777652221111     


Q ss_pred             cEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchh-hhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427          543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS  621 (829)
Q Consensus       543 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  621 (829)
                                        -..+++|+.|.++.|.++...-. ....+|+|+.|+|.+|.....-.....-++.|+.|||+
T Consensus       193 ------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  193 ------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             ------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence                              12345566666666666532222 23345666666666664222222233345566666666


Q ss_pred             CCcCc
Q 037427          622 NNNLF  626 (829)
Q Consensus       622 ~N~l~  626 (829)
                      +|++.
T Consensus       255 ~N~li  259 (505)
T KOG3207|consen  255 NNNLI  259 (505)
T ss_pred             CCccc
Confidence            66653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=2.1e-11  Score=121.20  Aligned_cols=96  Identities=26%  Similarity=0.338  Sum_probs=47.4

Q ss_pred             ccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCC---CCccchh-------hhcCCCCCCEEEcCCCcCC
Q 037427           94 LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNL---FNNSIFS-------SLAGLSSLRTLSLGYNRLK  163 (829)
Q Consensus        94 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~L~~L~~L~Ls~n~i~  163 (829)
                      +.++..++.++||+|.+.........+.+.+.+.|+..++|.-.   ....+|.       ++..+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            44566777777777776544332222335666667776666431   1112332       2334456666666666553


Q ss_pred             ccCC--ccccccCCCCCCEEecCCCCCC
Q 037427          164 GSID--VKETLDNFTNLEDLTLDYSSLH  189 (829)
Q Consensus       164 ~~~p--~~~~l~~l~~L~~L~Ls~n~l~  189 (829)
                      -.-+  ....+..++.|++|.|.+|.+.
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            1111  1223344455555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=3.7e-10  Score=105.94  Aligned_cols=111  Identities=24%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             cCCCCCCCEEECCCCCCCccchhhhc-CCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCC
Q 037427          122 LSGLSKLKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFT  200 (829)
Q Consensus       122 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  200 (829)
                      +.+..++++|+|++|.|+.+  ..++ .+.+|+.|+|++|.|+. +   +.+..+++|++|++++|.++...+.....++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L---EGLPGLPRLKTLDLSNNRISSISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c---cCccChhhhhhcccCCCCCCccccchHHhCC
Confidence            44455667777777776642  2344 46677777777777762 2   3566677777777777777654322224577


Q ss_pred             CCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCc
Q 037427          201 SLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR  240 (829)
Q Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~  240 (829)
                      +|++|++++|+|...-  ....+..+++|++|++.+|.++
T Consensus        89 ~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCccc
Confidence            7777777777776421  2234566777777777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=6.4e-10  Score=104.30  Aligned_cols=126  Identities=29%  Similarity=0.402  Sum_probs=37.4

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccC-CCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccc-cCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLS-GLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETL-DNF  175 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l-~~l  175 (829)
                      ..+++|+|.+|.|..+-.      ++ .+.+|++|||++|.++..  +.+..+++|++|++++|+|+. ++  +.+ ..+
T Consensus        19 ~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~--~~l~~~l   87 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-IS--EGLDKNL   87 (175)
T ss_dssp             -----------------S--------TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--C--HHHHHH-
T ss_pred             cccccccccccccccccc------hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cc--cchHHhC
Confidence            345666666666654322      33 356666666666666542  235566666666666666652 22  223 245


Q ss_pred             CCCCEEecCCCCCCch-hhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEEC
Q 037427          176 TNLEDLTLDYSSLHIS-ILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHM  234 (829)
Q Consensus       176 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L  234 (829)
                      ++|++|++++|.|... ....++.+++|++|++.+|.+...---....+..+|+|+.||-
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            6666666666666432 1244556666677777666665331111113455677777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=6e-11  Score=118.04  Aligned_cols=175  Identities=19%  Similarity=0.190  Sum_probs=85.6

Q ss_pred             cccccCCcEEecccccCCCc----cCccCCCCCCCcEEECCCCc---CCCCccc-------ccCCCCCCCEEEccCCccc
Q 037427          441 KNYLRKLARLHLDANYFTGE----IPKSLSNCSRLEGLYMSDNN---LYGNIPA-------RLGNLSSLNDIMMASNHLQ  506 (829)
Q Consensus       441 ~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~p~-------~l~~l~~L~~L~l~~n~l~  506 (829)
                      ...+..++.+++++|.+...    +...+...+.|+..++++--   ....+|.       .+..++.|++|+||+|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34456677777777766422    22344555666666666521   1122332       2233445555555555554


Q ss_pred             CCChhh----hhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc-
Q 037427          507 GPIPLE----FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI-  581 (829)
Q Consensus       507 ~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-  581 (829)
                      ...+..    +.++..|++|.|.+|.+.-. ....--..|..|.  .++        ....-+.|++++...|++.... 
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~--~~k--------k~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELA--VNK--------KAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHH--HHh--------ccCCCcceEEEEeeccccccccH
Confidence            333322    23444555555555544310 0000000011000  000        0233456777777777765432 


Q ss_pred             ---hhhhhcCCCCCEEEccCCccccc----CCcccCCCCCCCEEECcCCcCc
Q 037427          582 ---PYWIERLIRLRYLILANNNLEGE----VPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       582 ---~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                         ...|...+.|+.+.+..|.|...    +...+.++++|++|||.+|-++
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence               23345566777777777766421    2234566777777777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=8.6e-11  Score=120.05  Aligned_cols=182  Identities=25%  Similarity=0.229  Sum_probs=84.3

Q ss_pred             CccEEEccCCCCCCCcC-hhhhCCCCcCEEEcCCCCCCCCCch-HHhhcCCCCCEEEccCCcCcCCCCCCC-CCCCCCCE
Q 037427          316 QLESVSLSGSDIHATFP-KFLYNQHDLELVDFSDSNLKGEFPN-WLLKNNPNLSTLVLRNNSLSGPFQTPI-QPHWHLDA  392 (829)
Q Consensus       316 ~L~~L~Ls~~~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~  392 (829)
                      +|+++.|.++.+..... .....+++++.|||+.|-+..-.|. .+...+|+|+.|+++.|++........ ..+     
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l-----  196 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL-----  196 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-----
Confidence            56666666666533221 2445566666666666655421111 234455666666666665543211111 122     


Q ss_pred             EEccCCcccccCchhhhhccccccccCCCcccEEEccccccccc-CccccccccCCcEEecccccCCCccCccCCCCCCC
Q 037427          393 LHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ-LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRL  471 (829)
Q Consensus       393 L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  471 (829)
                                                  +.|+.|.|+.|.++.. +......+|+|+.|++..|...........-++.|
T Consensus       197 ----------------------------~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  197 ----------------------------SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             ----------------------------hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence                                        3455555555555421 11122345555555555553221222222334455


Q ss_pred             cEEECCCCcCCCCc-ccccCCCCCCCEEEccCCcccCCC-hhh-----hhCCCCCCEEeCCCCcCc
Q 037427          472 EGLYMSDNNLYGNI-PARLGNLSSLNDIMMASNHLQGPI-PLE-----FCQLNYLEILDLSENNIS  530 (829)
Q Consensus       472 ~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~  530 (829)
                      +.|||++|.+.... -...+.++.|+.|+++.+.+...- |+.     ....++|++|++..|++.
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            66666666554211 023445555555555555554321 111     123455666666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.95  E-value=9.4e-11  Score=129.11  Aligned_cols=266  Identities=23%  Similarity=0.244  Sum_probs=134.8

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      .++.++..++.+....-. ...+..++.+.+..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence            445555555443322111 1234455555555555552 222344555555566665555522 2123444455555555


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  581 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  581 (829)
                      +|.|+...+  +..++.                       |+.|++++|.+.. +..  +..++.|+.+++++|++...-
T Consensus       127 ~N~I~~i~~--l~~l~~-----------------------L~~L~l~~N~i~~-~~~--~~~l~~L~~l~l~~n~i~~ie  178 (414)
T KOG0531|consen  127 FNKITKLEG--LSTLTL-----------------------LKELNLSGNLISD-ISG--LESLKSLKLLDLSYNRIVDIE  178 (414)
T ss_pred             ccccccccc--hhhccc-----------------------hhhheeccCcchh-ccC--CccchhhhcccCCcchhhhhh
Confidence            555443221  333333                       4444444444422 111  444666666777777666443


Q ss_pred             h-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427          582 P-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY  660 (829)
Q Consensus       582 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (829)
                      + . ...+.+++.+.+.+|.+.  ....+..+..+..+++..|.++..-+-.                            
T Consensus       179 ~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~l~----------------------------  227 (414)
T KOG0531|consen  179 NDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEGLN----------------------------  227 (414)
T ss_pred             hhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccCcc----------------------------
Confidence            3 2 355666667777777664  2223334444555566666654211100                            


Q ss_pred             ecCCCccccccceeeecccceeeecCCCCC--CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427          661 FVGPSILEKEESIMFTTKEISFSYKGKPLN--KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN  738 (829)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  738 (829)
                                                 .+.  .|+.+++++|.+. .++..+..+..+..|++++|++...  ..+....
T Consensus       228 ---------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~  277 (414)
T KOG0531|consen  228 ---------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLP  277 (414)
T ss_pred             ---------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccc
Confidence                                       000  2566777777766 4445566667777777777777654  2344556


Q ss_pred             cCCeeecCCCcCccc---CCcc-cccCCCCcEEeccCCcceeecC
Q 037427          739 QVESLDVSHNNLNGK---IPPQ-LVELNALVVFSVAHNNLSAAER  779 (829)
Q Consensus       739 ~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~ip  779 (829)
                      .+..+.+..|.+...   .... ......+....+.+|+.....+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            666666666666521   1111 3455666777777777665544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.2e-10  Score=111.13  Aligned_cols=62  Identities=23%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL  625 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  625 (829)
                      ..-.|.++.|++|+|.|... . .+..+++|+.|||++|.++ .+..+-..+-+.++|.|++|.+
T Consensus       303 vKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             hhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence            34455666666666666522 2 2555666666666666665 4444444555556666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=3.7e-09  Score=124.13  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=55.9

Q ss_pred             CCCEEECCCCC--CCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCE
Q 037427          127 KLKLLNLGRNL--FNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR  204 (829)
Q Consensus       127 ~L~~L~Ls~n~--l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  204 (829)
                      .|++|-+..|.  +.......|..++.|++|||++|.--+.+|  ..++.+-+||+|+|++..+. .+|..++++++|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            45555555553  332333445556666666666554444555  55566666666666665555 45556666666666


Q ss_pred             EEcccccCccccCCCccccCCCCCCcEEECCC
Q 037427          205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGG  236 (829)
Q Consensus       205 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~  236 (829)
                      |++..+.....+|.   ....+++|++|.+..
T Consensus       623 Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  623 LNLEVTGRLESIPG---ILLELQSLRVLRLPR  651 (889)
T ss_pred             eccccccccccccc---hhhhcccccEEEeec
Confidence            66655543333333   333456666665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.7e-09  Score=82.12  Aligned_cols=59  Identities=44%  Similarity=0.631  Sum_probs=28.8

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNN  749 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  749 (829)
                      +|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555555553333444455555555555555554444444555555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.7e-09  Score=82.17  Aligned_cols=61  Identities=41%  Similarity=0.620  Sum_probs=57.5

Q ss_pred             CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcc
Q 037427          714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL  774 (829)
Q Consensus       714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  774 (829)
                      ++|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999988778999999999999999999988889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=4.7e-09  Score=123.27  Aligned_cols=129  Identities=22%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCC--CCCcCCCccccccCCCCCCCEEECCCCCCCccchhh
Q 037427           68 GRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNN--IAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSS  145 (829)
Q Consensus        68 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  145 (829)
                      ..|+++.+.++....      +  ..-...+.|++|-+.+|.  +......    .|..++.|++||||+|.--+.+|..
T Consensus       523 ~~~rr~s~~~~~~~~------~--~~~~~~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH------I--AGSSENPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             hheeEEEEeccchhh------c--cCCCCCCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChH
Confidence            456777766654321      0  011234579999988886  3333222    3788999999999998777789999


Q ss_pred             hcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEccccc
Q 037427          146 LAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR  211 (829)
Q Consensus       146 l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  211 (829)
                      ++.|-+||||+|+++.+. .+|  ..++++..|.+|++..+.-...+|.....+++||+|.+....
T Consensus       591 I~~Li~LryL~L~~t~I~-~LP--~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGIS-HLP--SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HhhhhhhhcccccCCCcc-ccc--hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999999999999998 677  899999999999999988776677778889999999987654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.75  E-value=1.1e-08  Score=71.72  Aligned_cols=40  Identities=38%  Similarity=0.765  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCCCCCCCC-CCCCccccceEec
Q 037427           23 EQERSALLRLKHDFF-NDPFNLENWVDDEN-HSDCCKWEGVECN   64 (829)
Q Consensus        23 ~~~~~~ll~~k~~~~-~~~~~l~~w~~~~~-~~~~c~w~gv~c~   64 (829)
                      ++|++||++||+++. ++...+.+|..  . ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            689999999999998 45578999972  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=1.6e-09  Score=119.39  Aligned_cols=195  Identities=26%  Similarity=0.269  Sum_probs=138.6

Q ss_pred             CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427          420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM  499 (829)
Q Consensus       420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  499 (829)
                      +..++.+.+..|.+.. .-..+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|+..  ..+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            4578888899998875 223466789999999999999854 33377899999999999999855  3467788899999


Q ss_pred             ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCC-CCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC
Q 037427          500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS-CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS  578 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~  578 (829)
                      +++|.+...  ..+..++.|+.+++++|.+...-+. .-.+.+++.+++.+|.+...-.   +..+..+..+++..|.++
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc---hHHHHHHHHhhcccccce
Confidence            999999843  3466689999999999999854442 2466778888888887743222   334445555577777766


Q ss_pred             CcchhhhhcCCC--CCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc
Q 037427          579 GNIPYWIERLIR--LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       579 ~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      ..-+  +..+..  |+.+++++|++. ..+..+..+..+..|++.+|++.
T Consensus       222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            3322  122222  677777777776 44355666777777777777764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=3.7e-08  Score=94.70  Aligned_cols=237  Identities=17%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCC---Cccc-------hhhhcCCCCCCEEEcCCCcCCccC
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLF---NNSI-------FSSLAGLSSLRTLSLGYNRLKGSI  166 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~-------~~~l~~L~~L~~L~Ls~n~i~~~~  166 (829)
                      +..+..+|||+|.|...........+.+-++|++.++|.-..   ...+       ..++-+|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            456666666666665543333233355566667666665321   1112       234456677777777777665443


Q ss_pred             C--ccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC
Q 037427          167 D--VKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP  244 (829)
Q Consensus       167 p--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p  244 (829)
                      |  ..+.++.-+.|++|.|++|.+.-..-..+++  .|.+  |..|+          ....-|.|+......|++.. .|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nK----------Kaa~kp~Le~vicgrNRlen-gs  173 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNK----------KAADKPKLEVVICGRNRLEN-GS  173 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHh----------hhccCCCceEEEeccchhcc-Cc
Confidence            3  2334555666666666666543221111110  0000  00000          11233455555555555531 01


Q ss_pred             CccCcccccccCCCCCCCCCCCCEEEcccccCccc----cCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEE
Q 037427          245 CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP----FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV  320 (829)
Q Consensus       245 ~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L  320 (829)
                              -...+..+..-..|+.+.+..|.|...    .....+..+.+|++|++..|.++....              
T Consensus       174 --------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS--------------  231 (388)
T COG5238         174 --------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS--------------  231 (388)
T ss_pred             --------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH--------------
Confidence                    000011112224566666666655411    000113345555555555554432110              


Q ss_pred             EccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhc-----CCCCCEEEccCCcCcC
Q 037427          321 SLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN-----NPNLSTLVLRNNSLSG  378 (829)
Q Consensus       321 ~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-----l~~L~~L~L~~n~l~~  378 (829)
                              ..+...+..++.|+.|.+.+|-++......++..     .|+|..|-..+|...+
T Consensus       232 --------~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         232 --------RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             --------HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence                    1122334455667888888887776555554432     4677777777777664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.1e-08  Score=97.66  Aligned_cols=203  Identities=18%  Similarity=0.183  Sum_probs=113.9

Q ss_pred             CCEEECCCCCCCccchhhhcCC--CCCCEEEcCCCcCCccCC-ccccccCC-CCCCEEecCCCCCCch-hhHhhhcCCCC
Q 037427          128 LKLLNLGRNLFNNSIFSSLAGL--SSLRTLSLGYNRLKGSID-VKETLDNF-TNLEDLTLDYSSLHIS-ILKSIAAFTSL  202 (829)
Q Consensus       128 L~~L~Ls~n~l~~~~~~~l~~L--~~L~~L~Ls~n~i~~~~p-~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~l~~l~~L  202 (829)
                      =+.||+.+-.+.   |.+++.+  ....++.+....+..  | ..+.+.-+ +.||+||||...|+.. .-..+..+.+|
T Consensus       138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~--prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQ--PRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL  212 (419)
T ss_pred             eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcC--chhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence            356777776554   5555554  344555555443331  2 11233333 3589999999888743 33446788888


Q ss_pred             CEEEcccccCccccCCCccccCCCCCCcEEECCCcc-CccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccC
Q 037427          203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGND-LRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFS  281 (829)
Q Consensus       203 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~  281 (829)
                      +.|.+.+++++..+..   .+.+-.+|+.|+++.+. ++. .. +          ..-+.+++.|.+|+|+||.+..+.-
T Consensus       213 k~lSlEg~~LdD~I~~---~iAkN~~L~~lnlsm~sG~t~-n~-~----------~ll~~scs~L~~LNlsWc~l~~~~V  277 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVN---TIAKNSNLVRLNLSMCSGFTE-NA-L----------QLLLSSCSRLDELNLSWCFLFTEKV  277 (419)
T ss_pred             hhccccccccCcHHHH---HHhccccceeeccccccccch-hH-H----------HHHHHhhhhHhhcCchHhhccchhh
Confidence            8888888888876555   67777888888888763 221 00 0          1123567777777777776543221


Q ss_pred             chhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCC---CCcChhhhCCCCcCEEEcCCCCCCCCCchH
Q 037427          282 LEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIH---ATFPKFLYNQHDLELVDFSDSNLKGEFPNW  358 (829)
Q Consensus       282 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~---~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  358 (829)
                      ...+                         ..-..+|+.|+|+|+.-.   ..+......+++|..|||++|.....--..
T Consensus       278 tv~V-------------------------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~  332 (419)
T KOG2120|consen  278 TVAV-------------------------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  332 (419)
T ss_pred             hHHH-------------------------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence            1111                         111235667777766421   122223345677777777776532221111


Q ss_pred             HhhcCCCCCEEEccCCc
Q 037427          359 LLKNNPNLSTLVLRNNS  375 (829)
Q Consensus       359 ~~~~l~~L~~L~L~~n~  375 (829)
                      .+-+++.|++|.++.|.
T Consensus       333 ~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHHhcchheeeehhhhc
Confidence            23456666666666664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.34  E-value=1.7e-08  Score=86.99  Aligned_cols=90  Identities=18%  Similarity=0.321  Sum_probs=74.2

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      .++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||..+|.+. +||..+..-+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            5677899999998 88999999999999999999999 67888888999999999999998 677665444455556677


Q ss_pred             CCcceeecCCCCC
Q 037427          771 HNNLSAAERNPGP  783 (829)
Q Consensus       771 ~N~l~g~ip~~~~  783 (829)
                      ++++.+.-|-++|
T Consensus       155 nepl~~~~~~klq  167 (177)
T KOG4579|consen  155 NEPLGDETKKKLQ  167 (177)
T ss_pred             CCcccccCccccc
Confidence            8888887776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1.5e-08  Score=109.87  Aligned_cols=182  Identities=27%  Similarity=0.328  Sum_probs=104.5

Q ss_pred             ccccCCCCCcEEeCCCCCCCCcCCCccccccCCC-CCCCEEECCCCCCC---ccchhhhcCC------CCCCEEEcCCCc
Q 037427           92 SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGL-SKLKLLNLGRNLFN---NSIFSSLAGL------SSLRTLSLGYNR  161 (829)
Q Consensus        92 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~---~~~~~~l~~L------~~L~~L~Ls~n~  161 (829)
                      -.+.+|+.||+|.|.++.+.....      +..+ ..|++|-.++ .+.   ..+....+..      ..|.+.+.+.|+
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~~G------L~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTAKG------LQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNR  175 (1096)
T ss_pred             ceeccccceeeEEecCcchhhhhh------hHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence            346778888888888888764211      1111 1233332221 110   0011111111      245566666666


Q ss_pred             CCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCcc
Q 037427          162 LKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG  241 (829)
Q Consensus       162 i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g  241 (829)
                      +. .+.  .++.-++.|++|+|++|+++..  +.+..+++|++|||+.|.+. .+|..  +...+. |+.|.+.+|.++.
T Consensus       176 L~-~mD--~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l--~~~gc~-L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  176 LV-LMD--ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL--SMVGCK-LQLLNLRNNALTT  246 (1096)
T ss_pred             HH-hHH--HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc--chhhhh-heeeeecccHHHh
Confidence            65 223  5666677777777777777654  46777777777777777766 33331  222333 7777777776652


Q ss_pred             ccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeec
Q 037427          242 TLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE  304 (829)
Q Consensus       242 ~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  304 (829)
                       +              ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+...
T Consensus       247 -L--------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  247 -L--------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             -h--------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence             1              12266777777777777776655555666777777777777776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=3.4e-08  Score=107.16  Aligned_cols=124  Identities=27%  Similarity=0.222  Sum_probs=92.8

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCccc-ccCCCCCCCEEEc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA-RLGNLSSLNDIMM  500 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l  500 (829)
                      .|...+.++|.+. .+...+.-++.|+.|+|++|+++..  +.+..++.|++|||++|.+. .+|. ....+. |..|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            6777888888876 3445666788899999999999854  36888999999999999887 4443 223343 889999


Q ss_pred             cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCC--CCCCCCcccEEEccCCcc
Q 037427          501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNML  552 (829)
Q Consensus       501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l  552 (829)
                      ++|.++..  ..+.++.+|+.||+++|-+.+.-.  ..+.+..|+.|+|.+|.+
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            99988743  457788999999999998874322  223667788888888876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=3.4e-08  Score=96.21  Aligned_cols=65  Identities=18%  Similarity=0.111  Sum_probs=30.3

Q ss_pred             CCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCC
Q 037427          262 HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI  327 (829)
Q Consensus       262 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l  327 (829)
                      .+++|.+|||++|.--..--...|.+++.|+++.++.+.... +.........+.|.+|+..++--
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEeccccC
Confidence            455555555555432111112234455555555555543221 11111123445788888777643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=4.6e-07  Score=78.27  Aligned_cols=68  Identities=18%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccccc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE  760 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  760 (829)
                      .|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+. .+|-.+-.-+..-..++.++.+.+.-|..+..
T Consensus       101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen  101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence            5666667777766 55666666777777777777777 44444332334444566777777766654443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.3e-06  Score=85.50  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             CCCCCEEEccCCcccC--CChhhhhCCCCCCEEeCCCCcCcccCCCC-CCCCcccEEEccCCcccCcCCccccCCCCCcc
Q 037427          492 LSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV  568 (829)
Q Consensus       492 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  568 (829)
                      ++.++.+++.+|.|+.  .+...+.++|.|++|+++.|++...+... ....+|+.|-|.+..+.-.-....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3455556666665542  22233446677777777777666444333 24445566655555443222222244555555


Q ss_pred             EEEccCC
Q 037427          569 TLDLSYN  575 (829)
Q Consensus       569 ~L~Ls~n  575 (829)
                      .|.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5655555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.8e-06  Score=83.15  Aligned_cols=200  Identities=15%  Similarity=0.105  Sum_probs=91.7

Q ss_pred             CCcccEEEcccccccc--cCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCC-CcccccCCCCCCC
Q 037427          420 CFNLEYLVLSENSLHG--QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG-NIPARLGNLSSLN  496 (829)
Q Consensus       420 ~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~  496 (829)
                      ++.++.+||.+|.++.  ++...+.++|.|++|+++.|.+...+...-....+|++|-|.+..+.- .....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3455666666666542  223334456666666666666653322111234456666666554431 1122344555555


Q ss_pred             EEEccCCcccCCC--hhhhhC-CCCCCEEeCCCCcCcccCC--CC-CCCCcccEEEccCCcccCcCCccccCCCCCccEE
Q 037427          497 DIMMASNHLQGPI--PLEFCQ-LNYLEILDLSENNISGSLP--SC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL  570 (829)
Q Consensus       497 ~L~l~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~--~~-~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  570 (829)
                      .|.++.|......  .+.... -+.+.+|..-.|...-...  .. -.++++..+.+..|.+...-....+...+.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            6655555322110  001111 1122333333322110000  00 0233455555555554333332224445555666


Q ss_pred             EccCCcCCCcc-hhhhhcCCCCCEEEccCCcccccCCc------ccCCCCCCCEEE
Q 037427          571 DLSYNSFSGNI-PYWIERLIRLRYLILANNNLEGEVPN------QLCGLKQLRLID  619 (829)
Q Consensus       571 ~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~  619 (829)
                      +|+.|+|..-. -+.+.++++|..|.++++.+....-.      .++.+++++.|+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            77777665321 23456667777777777766533221      245566666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.95  E-value=6.2e-07  Score=86.48  Aligned_cols=47  Identities=28%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEccccccc
Q 037427          383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLH  434 (829)
Q Consensus       383 ~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~  434 (829)
                      ++..+++|+..+||+|.|....|+.++.++...     +.|++|.+++|.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~-----t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSS-----TDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcC-----CCceeEEeecCCCC
Confidence            344566677777777777666666666654433     56777777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=3.3e-05  Score=81.77  Aligned_cols=73  Identities=10%  Similarity=0.177  Sum_probs=40.2

Q ss_pred             CCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC-cccccCCcccCCCCCCCE
Q 037427          539 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN-NLEGEVPNQLCGLKQLRL  617 (829)
Q Consensus       539 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~  617 (829)
                      +..++.|++++|.+. .+|.  +  .++|+.|.++++.--..+|..+.  ++|+.|++++| .+. .+|.      +|+.
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence            466777777777653 3441  1  23577777776443334554442  46777777776 433 3332      3555


Q ss_pred             EECcCCcC
Q 037427          618 IDLSNNNL  625 (829)
Q Consensus       618 L~Ls~N~l  625 (829)
                      |+++++..
T Consensus       117 L~L~~n~~  124 (426)
T PRK15386        117 LEIKGSAT  124 (426)
T ss_pred             EEeCCCCC
Confidence            66655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.2e-05  Score=56.40  Aligned_cols=36  Identities=36%  Similarity=0.658  Sum_probs=15.8

Q ss_pred             CCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427          715 NIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN  751 (829)
Q Consensus       715 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  751 (829)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.2e-05  Score=56.41  Aligned_cols=38  Identities=34%  Similarity=0.731  Sum_probs=32.9

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCC
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV  729 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  729 (829)
                      +|++|++++|+++ .+|..+++|++|++|++++|+|+..
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            7899999999999 6787899999999999999999943

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=0.00015  Score=67.57  Aligned_cols=11  Identities=27%  Similarity=0.480  Sum_probs=4.7

Q ss_pred             CCCCCCcEEEC
Q 037427          224 CRLGHLQELHM  234 (829)
Q Consensus       224 ~~l~~L~~L~L  234 (829)
                      .++++|+.||.
T Consensus       137 ~klp~l~~LDF  147 (233)
T KOG1644|consen  137 YKLPSLRTLDF  147 (233)
T ss_pred             EecCcceEeeh
Confidence            33444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.55  E-value=0.0001  Score=68.59  Aligned_cols=108  Identities=24%  Similarity=0.259  Sum_probs=81.0

Q ss_pred             CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCC
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFT  176 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~  176 (829)
                      ..+...+||++|.+.....      |..+++|.+|.|++|+|+.+.|.--.-+++|..|.|.+|.|.. +.....+..++
T Consensus        41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p  113 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCP  113 (233)
T ss_pred             ccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCC
Confidence            3466788899888875533      7788899999999999987666655667789999999998862 22334678888


Q ss_pred             CCCEEecCCCCCCchh---hHhhhcCCCCCEEEccccc
Q 037427          177 NLEDLTLDYSSLHISI---LKSIAAFTSLKRLSIQNGR  211 (829)
Q Consensus       177 ~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~  211 (829)
                      .|++|.+-+|..+..-   .-.+..+++|++||...-.
T Consensus       114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9999999998877442   1246788999999987543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=5.6e-05  Score=87.14  Aligned_cols=157  Identities=17%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             CCCCEEECCCCCCC-ccchhhhc-CCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCC
Q 037427          126 SKLKLLNLGRNLFN-NSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLK  203 (829)
Q Consensus       126 ~~L~~L~Ls~n~l~-~~~~~~l~-~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  203 (829)
                      .+|++||+++...- ..-|..++ .||+|+.|.+++-.+...- ......++++|..||+|+++++..  ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            46666777664432 11223333 3567777776665443110 113345667777777777776655  5667777777


Q ss_pred             EEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCch
Q 037427          204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLE  283 (829)
Q Consensus       204 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~  283 (829)
                      +|.+.+-.+...  ..+..+.+|++|+.||+|.......--.+     .-.++.  -..+++|+.||.|+..+...+-..
T Consensus       199 ~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-----~qYlec--~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  199 VLSMRNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKII-----EQYLEC--GMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHhccCCCCCch--hhHHHHhcccCCCeeeccccccccchHHH-----HHHHHh--cccCccccEEecCCcchhHHHHHH
Confidence            776665544321  12224666777777777765433211000     000101  134778888888887776555444


Q ss_pred             hhcCCCCCcee
Q 037427          284 PFFNLSKLKVF  294 (829)
Q Consensus       284 ~l~~l~~L~~L  294 (829)
                      .+..-++|+.+
T Consensus       270 ll~sH~~L~~i  280 (699)
T KOG3665|consen  270 LLNSHPNLQQI  280 (699)
T ss_pred             HHHhCccHhhh
Confidence            44444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.0006  Score=72.41  Aligned_cols=31  Identities=6%  Similarity=0.218  Sum_probs=16.5

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCC
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHN  724 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  724 (829)
                      +|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            5566666665544 3333333  35666666655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.38  E-value=1.3e-05  Score=82.35  Aligned_cols=64  Identities=16%  Similarity=0.063  Sum_probs=30.7

Q ss_pred             hCCCCcCEEEcCCCCCCCCCc----hHHhhcCCCCCEEEccCCcCcC-CCCCCCCCCCCCCEEEccCCc
Q 037427          336 YNQHDLELVDFSDSNLKGEFP----NWLLKNNPNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSKNF  399 (829)
Q Consensus       336 ~~~~~L~~L~Ls~n~l~~~~p----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~  399 (829)
                      .+++.|+.+.+++|.....-.    ...-..+..|+.+.++++.... .....+..++.|+.+++-+++
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            345566666666554321110    0001234556666666665442 222234455666666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.27  E-value=1.5e-05  Score=81.99  Aligned_cols=39  Identities=23%  Similarity=0.269  Sum_probs=19.5

Q ss_pred             CCCCcCEEEcCCCCCCCCCchH-HhhcCCCCCEEEccCCc
Q 037427          337 NQHDLELVDFSDSNLKGEFPNW-LLKNNPNLSTLVLRNNS  375 (829)
Q Consensus       337 ~~~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~  375 (829)
                      .+..|+.++.+++.-.+..+-+ +..+.++|+.|-++.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence            3556666666665543222222 22344556666555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.00028  Score=68.84  Aligned_cols=86  Identities=26%  Similarity=0.345  Sum_probs=49.9

Q ss_pred             CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCC--CCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN--LFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN  174 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~  174 (829)
                      +..|+.|++.+..++....      +-.+++|+.|.+|.|  ++.+.++.....+++|++|+|++|+|.. +.....+..
T Consensus        42 ~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~  114 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKE  114 (260)
T ss_pred             ccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhh
Confidence            4445555555555543322      556677777777777  5555555455566777777777777762 221234455


Q ss_pred             CCCCCEEecCCCCCC
Q 037427          175 FTNLEDLTLDYSSLH  189 (829)
Q Consensus       175 l~~L~~L~Ls~n~l~  189 (829)
                      +.+|..|++..|..+
T Consensus       115 l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVT  129 (260)
T ss_pred             hcchhhhhcccCCcc
Confidence            556666666666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.10  E-value=0.00036  Score=80.60  Aligned_cols=140  Identities=19%  Similarity=0.252  Sum_probs=90.1

Q ss_pred             CCCCcEEeCCCCCCCCcCCCcccccc-CCCCCCCEEECCCCCCCcc-chhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERL-SGLSKLKLLNLGRNLFNNS-IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN  174 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~  174 (829)
                      -++|++||+++......   .....+ ..||+|+.|.+++-.+... ......++++|+.||+|++.++..    ..+++
T Consensus       121 r~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~  193 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISR  193 (699)
T ss_pred             HHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhc
Confidence            36788888877543311   111112 3578888888887666433 334456788888888888887732    57888


Q ss_pred             CCCCCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCcccc--CC-CccccCCCCCCcEEECCCccCcccc
Q 037427          175 FTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGAL--GD-DEEGLCRLGHLQELHMGGNDLRGTL  243 (829)
Q Consensus       175 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~~-~~~~l~~l~~L~~L~L~~n~l~g~~  243 (829)
                      +++|+.|.+.+-.+.. .....+.+|++|++||+|..+.....  .. ..+.-..+|+|+.||.|++.+.+.+
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            8888888888777664 33456778888888888876543221  00 0011224788999999888776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0027  Score=57.31  Aligned_cols=11  Identities=27%  Similarity=0.443  Sum_probs=3.1

Q ss_pred             hcCCCCCEEEc
Q 037427          361 KNNPNLSTLVL  371 (829)
Q Consensus       361 ~~l~~L~~L~L  371 (829)
                      .++++|+.+.+
T Consensus         9 ~~~~~l~~i~~   19 (129)
T PF13306_consen    9 YNCSNLESITF   19 (129)
T ss_dssp             TT-TT--EEEE
T ss_pred             hCCCCCCEEEE
Confidence            33334444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.4e-05  Score=74.31  Aligned_cols=84  Identities=23%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCC
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFT  176 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~  176 (829)
                      +.+.+.|+..++.+.++.-      +.+++.|++|.||-|.|+..  ..|..|++|+.|+|..|.|. .+.....+.+++
T Consensus        18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHHH------HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            4456666777776665432      45677777777777777653  33667777777777777665 223234455556


Q ss_pred             CCCEEecCCCCCC
Q 037427          177 NLEDLTLDYSSLH  189 (829)
Q Consensus       177 ~L~~L~Ls~n~l~  189 (829)
                      +|+.|.|..|.-.
T Consensus        89 sLr~LWL~ENPCc  101 (388)
T KOG2123|consen   89 SLRTLWLDENPCC  101 (388)
T ss_pred             hhhhHhhccCCcc
Confidence            6666666555433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.82  E-value=0.003  Score=57.01  Aligned_cols=62  Identities=18%  Similarity=0.214  Sum_probs=27.8

Q ss_pred             ccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427          558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS  621 (829)
Q Consensus       558 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  621 (829)
                      ..+|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            33456666666666653 344444455566666666666554 443444455555556666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.00042  Score=67.62  Aligned_cols=86  Identities=24%  Similarity=0.367  Sum_probs=46.0

Q ss_pred             CCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCC--cCCccCCccccccCCCCCCEEecCCCCCCc-hhhHhhhcCC
Q 037427          124 GLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYN--RLKGSIDVKETLDNFTNLEDLTLDYSSLHI-SILKSIAAFT  200 (829)
Q Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n--~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~  200 (829)
                      .+..|+.|++.+..++.  -..|-.|++|++|.+|.|  ++.+.++  -...++++|++|++++|++.. .....+..+.
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccce--ehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            34455555555544442  233556677777777777  4544444  233444677777777776652 1112234445


Q ss_pred             CCCEEEcccccCc
Q 037427          201 SLKRLSIQNGRVD  213 (829)
Q Consensus       201 ~L~~L~L~~n~l~  213 (829)
                      +|..|++.+|...
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            5555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.00038  Score=68.02  Aligned_cols=80  Identities=29%  Similarity=0.277  Sum_probs=38.2

Q ss_pred             CCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchh-----hhhcCC
Q 037427          515 QLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-----WIERLI  589 (829)
Q Consensus       515 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----~l~~l~  589 (829)
                      .++.|+.|.||-|+|+ .+.....|+.|++|+|..|.+...-....+.++++|+.|.|..|.-.|..+.     .+.-++
T Consensus        39 kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            4444455555555444 2222224444444444444443222222245666666666666665554432     234456


Q ss_pred             CCCEEE
Q 037427          590 RLRYLI  595 (829)
Q Consensus       590 ~L~~L~  595 (829)
                      +|+.||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.55  E-value=0.0046  Score=35.94  Aligned_cols=12  Identities=58%  Similarity=0.747  Sum_probs=5.3

Q ss_pred             CCeeecCCCcCc
Q 037427          740 VESLDVSHNNLN  751 (829)
Q Consensus       740 L~~LdLs~N~l~  751 (829)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.31  E-value=0.0056  Score=35.58  Aligned_cols=19  Identities=58%  Similarity=0.791  Sum_probs=10.4

Q ss_pred             CCEEECCCCCCCCCcccccc
Q 037427          716 IRALNFSHNNLTGVIPVSFS  735 (829)
Q Consensus       716 L~~L~Ls~N~l~~~~p~~l~  735 (829)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455566666555 4554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.28  E-value=0.0026  Score=72.21  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=15.4

Q ss_pred             ccEEEccCCcCCCc-chhhhhc-CCCCCEEEccCCcc
Q 037427          567 IVTLDLSYNSFSGN-IPYWIER-LIRLRYLILANNNL  601 (829)
Q Consensus       567 L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l  601 (829)
                      ++.|+++.+..... .-..... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            55666665543211 1111111 44555666655543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.95  E-value=0.00059  Score=75.41  Aligned_cols=69  Identities=25%  Similarity=0.191  Sum_probs=30.8

Q ss_pred             ccCCCCCcEEeCCCCCCCCcCCCccccccCCC-CCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcC
Q 037427           94 LTPFQQLETLHLDSNNIAGFVENGGLERLSGL-SKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRL  162 (829)
Q Consensus        94 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i  162 (829)
                      +...+.|..|++++|.+.+.......+.+... ..|++|++..+.+++.    +...+....+++.+|++.|.+
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            34445555555555555522111111112222 3445555555554432    334444455555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.89  E-value=0.0043  Score=59.24  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=73.2

Q ss_pred             CCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427          690 NKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV  769 (829)
Q Consensus       690 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  769 (829)
                      ...+.||++.|++. ..-..|+-++.|..|+++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++.
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            36778999999987 45556788889999999999999 88999999999999999999998 78999999999999999


Q ss_pred             cCCcce
Q 037427          770 AHNNLS  775 (829)
Q Consensus       770 s~N~l~  775 (829)
                      -+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            988864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.81  E-value=0.02  Score=64.89  Aligned_cols=17  Identities=24%  Similarity=0.372  Sum_probs=10.2

Q ss_pred             cCCCCCccEEEccCCcC
Q 037427          561 FFNRSSIVTLDLSYNSF  577 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l  577 (829)
                      ...++.++.+.+.++..
T Consensus       358 ~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             HhcCCCcchhhhhhhhc
Confidence            45566666666666653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.51  E-value=0.001  Score=73.61  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CccEEEccCCCCCCCc----ChhhhCCCCcCEEEcCCCCCCC
Q 037427          316 QLESVSLSGSDIHATF----PKFLYNQHDLELVDFSDSNLKG  353 (829)
Q Consensus       316 ~L~~L~Ls~~~l~~~~----p~~l~~~~~L~~L~Ls~n~l~~  353 (829)
                      .++.++++.|.++..-    ...+..++.++++.++.|.+.+
T Consensus       263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            4455555555555433    3344456677777777777664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.15  E-value=0.14  Score=27.49  Aligned_cols=11  Identities=45%  Similarity=0.842  Sum_probs=3.3

Q ss_pred             CCEEECCCCCC
Q 037427          716 IRALNFSHNNL  726 (829)
Q Consensus       716 L~~L~Ls~N~l  726 (829)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.86  E-value=0.0066  Score=58.02  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             cCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427           95 TPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN  174 (829)
Q Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~  174 (829)
                      ..+.+.+.||++.|++...-..     |+-++.|..||++.|.+. ..|..++.+..++.+++..|..+ ..|  .+++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p--~s~~k  109 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP--KSQKK  109 (326)
T ss_pred             hccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC--ccccc
Confidence            4455566666666665543332     555667777777777665 46667777777777777776665 445  56677


Q ss_pred             CCCCCEEecCCCCCC
Q 037427          175 FTNLEDLTLDYSSLH  189 (829)
Q Consensus       175 l~~L~~L~Ls~n~l~  189 (829)
                      .++++++++.++.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            777777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.94  E-value=0.44  Score=28.86  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=5.7

Q ss_pred             CCCEEECCCCCCC
Q 037427          715 NIRALNFSHNNLT  727 (829)
Q Consensus       715 ~L~~L~Ls~N~l~  727 (829)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.94  E-value=0.44  Score=28.86  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=5.7

Q ss_pred             CCCEEECCCCCCC
Q 037427          715 NIRALNFSHNNLT  727 (829)
Q Consensus       715 ~L~~L~Ls~N~l~  727 (829)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.06  E-value=0.18  Score=47.67  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=47.1

Q ss_pred             CCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCcccccc-CCCCCCEEecCCC-CCCchhhHhhhcCCCCCEE
Q 037427          128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLD-NFTNLEDLTLDYS-SLHISILKSIAAFTSLKRL  205 (829)
Q Consensus       128 L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L  205 (829)
                      ++.+|-++..|..+--..+.+++.++.|.+.++.--+.-- .+.++ -.++|+.|++++| .|+......+..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4556666666655555556666666666666665432210 01222 2467777777766 3666666667777777777


Q ss_pred             Eccc
Q 037427          206 SIQN  209 (829)
Q Consensus       206 ~L~~  209 (829)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.77  E-value=0.57  Score=28.34  Aligned_cols=19  Identities=42%  Similarity=0.835  Sum_probs=13.8

Q ss_pred             cccCCeeecCCCcCcccCCc
Q 037427          737 LNQVESLDVSHNNLNGKIPP  756 (829)
Q Consensus       737 l~~L~~LdLs~N~l~~~ip~  756 (829)
                      +++|++|+|++|+|+ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888888888888 4443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.77  E-value=0.57  Score=28.34  Aligned_cols=19  Identities=42%  Similarity=0.835  Sum_probs=13.8

Q ss_pred             cccCCeeecCCCcCcccCCc
Q 037427          737 LNQVESLDVSHNNLNGKIPP  756 (829)
Q Consensus       737 l~~L~~LdLs~N~l~~~ip~  756 (829)
                      +++|++|+|++|+|+ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888888888888 4443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.66  E-value=0.38  Score=28.48  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=9.5

Q ss_pred             CCCCEEecCCCCCCchhhHhh
Q 037427          176 TNLEDLTLDYSSLHISILKSI  196 (829)
Q Consensus       176 ~~L~~L~Ls~n~l~~~~~~~l  196 (829)
                      ++|++|+|++|.+++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            455555555555554444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.77  E-value=0.44  Score=28.19  Aligned_cols=18  Identities=33%  Similarity=0.399  Sum_probs=8.0

Q ss_pred             CCccEEEccCCcCCCcch
Q 037427          565 SSIVTLDLSYNSFSGNIP  582 (829)
Q Consensus       565 ~~L~~L~Ls~n~l~~~~~  582 (829)
                      ++|++|++++|+|++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            345555555555544333

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	829
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 199/704 (28%), Positives = 312/704 (44%), Gaps = 111/704 (15%)
Query: 139 NNSIFSSLAGL---SSLRTLSLGYNRLKGSIDVKETLDN-----FTNLEDLTLDYSSLHI 190
           N+ I  S++G    +SL +L L  N L G +    +L +     F N+   TLD+     
Sbjct: 86  NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 191 SILKSIAAFTSLKRLSIQNGRVDGA--LGDDEEGLCRLGHLQELHMGGNDLRGTLP---C 245
             LK      SL+ L +    + GA  +G      C  G L+ L + GN + G +    C
Sbjct: 146 GGLK----LNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRC 199
Query: 246 L---YLNQLTGNISSS-PLI-HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNE 300
           +   +L+  + N S+  P +   ++++ L +S N+    FS       ++LK+ +   N+
Sbjct: 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ 258
Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD-LELVDFSDSNLKGEFPNWL 359
            +V P       P   L+ +SL+ +      P FL    D L  +D S ++  G  P + 
Sbjct: 259 -FVGP---IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 360 LKNNPNLSTLVLRNNSLSG--PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA 417
              +   S  +  NN  SG  P  T ++    L  L +S N F G +P  +     ++L+
Sbjct: 315 GSCSLLESLALSSNN-FSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESL-----TNLS 367
Query: 418 MGCFNLEYLVLSENSLHGQLFSK--KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475
                L+   LS N+  G +     +N    L  L+L  N FTG+IP +LSNCS L  L+
Sbjct: 368 ASLLTLD---LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS 535
           +S N L G IP+ LG+LS L D+ +  N L+G IP E   +  LE L L  N+++G +PS
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 536 CSSHST-IQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXX 592
             S+ T +  + LS N L G  P   G   N   +  L LS NSFSGNIP          
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPA--------- 532
Query: 593 XXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTF 652
                          +L   + L  +DL+ N   G IP  +   S        G  A  F
Sbjct: 533 ---------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------GKIAANF 569
Query: 653 NPNRRTTYFVGPSILEKE--------ESIMFTTKEISFSYKGKPLN---KMYG------- 694
              +R  Y      ++KE        E     +++++      P N   ++YG       
Sbjct: 570 IAGKRYVYIKNDG-MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 695 --------VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
                   +D+S N L+G IP +IG +  +  LN  HN+++G IP    +L  +  LD+S
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 747 HNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWP 790
            N L+G+IP  +  L  L    +++NNLS      G +  +T+P
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF--ETFP 730

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 199/461 (43%), Gaps = 46/461 (9%)
Query: 346 FSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT--PIQPHWHLDALHVSKNFFQGN 403
            S+S++ G    +  K + +L++L L  NSLSGP  T   +     L  L+VS N     
Sbjct: 84  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 404 IPLEIGVYFPSHLAMGCF--NLEYLVLSENSLHGQ---LFSKKNYLRKLARLHLDANYFT 458
                   FP  ++ G    +LE L LS NS+ G     +   +   +L  L +  N  +
Sbjct: 140 --------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Query: 459 GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
           G++   +S C  LE L +S NN    IP  LG+ S+L  + ++ N L G           
Sbjct: 192 GDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
           L++L++S N   G +P     S +Q + L++N   G +         ++  LDLS N F 
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 579 GNIPYWXXXXXXXXXXXXXXXXXEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
           G +P +                  GE+P + L  ++ L+++DLS N   G++P  L N S
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 638 -----LHNNGDNV-GSSAPTFNPNRRTTY---------FVGPSILEKEESIMFTTKEISF 682
                L  + +N  G   P    N + T          F G             +  +SF
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 683 SYKGK-------PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS 735
           +Y           L+K+  + L  N L GEIP ++  +  +  L    N+LTG IP   S
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 736 NLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           N   +  + +S+N L G+IP  +  L  L +  +++N+ S 
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 199/704 (28%), Positives = 312/704 (44%), Gaps = 111/704 (15%)
Query: 139 NNSIFSSLAGL---SSLRTLSLGYNRLKGSIDVKETLDN-----FTNLEDLTLDYSSLHI 190
           N+ I  S++G    +SL +L L  N L G +    +L +     F N+   TLD+     
Sbjct: 83  NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 142
Query: 191 SILKSIAAFTSLKRLSIQNGRVDGA--LGDDEEGLCRLGHLQELHMGGNDLRGTLP---C 245
             LK      SL+ L +    + GA  +G      C  G L+ L + GN + G +    C
Sbjct: 143 GGLK----LNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRC 196
Query: 246 L---YLNQLTGNISSS-PLI-HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNE 300
           +   +L+  + N S+  P +   ++++ L +S N+    FS       ++LK+ +   N+
Sbjct: 197 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ 255
Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD-LELVDFSDSNLKGEFPNWL 359
            +V P       P   L+ +SL+ +      P FL    D L  +D S ++  G  P + 
Sbjct: 256 -FVGP---IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 360 LKNNPNLSTLVLRNNSLSG--PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA 417
              +   S  +  NN  SG  P  T ++    L  L +S N F G +P  +     ++L+
Sbjct: 312 GSCSLLESLALSSNN-FSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESL-----TNLS 364
Query: 418 MGCFNLEYLVLSENSLHGQLFSK--KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475
                L+   LS N+  G +     +N    L  L+L  N FTG+IP +LSNCS L  L+
Sbjct: 365 ASLLTLD---LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS 535
           +S N L G IP+ LG+LS L D+ +  N L+G IP E   +  LE L L  N+++G +PS
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 536 CSSHST-IQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXX 592
             S+ T +  + LS N L G  P   G   N   +  L LS NSFSGNIP          
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPA--------- 529
Query: 593 XXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTF 652
                          +L   + L  +DL+ N   G IP  +   S        G  A  F
Sbjct: 530 ---------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------GKIAANF 566
Query: 653 NPNRRTTYFVGPSILEKE--------ESIMFTTKEISFSYKGKPLN---KMYG------- 694
              +R  Y      ++KE        E     +++++      P N   ++YG       
Sbjct: 567 IAGKRYVYIKNDG-MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 695 --------VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
                   +D+S N L+G IP +IG +  +  LN  HN+++G IP    +L  +  LD+S
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 747 HNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWP 790
            N L+G+IP  +  L  L    +++NNLS      G +  +T+P
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF--ETFP 727

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 199/461 (43%), Gaps = 46/461 (9%)
Query: 346 FSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT--PIQPHWHLDALHVSKNFFQGN 403
            S+S++ G    +  K + +L++L L  NSLSGP  T   +     L  L+VS N     
Sbjct: 81  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 404 IPLEIGVYFPSHLAMGCF--NLEYLVLSENSLHGQ---LFSKKNYLRKLARLHLDANYFT 458
                   FP  ++ G    +LE L LS NS+ G     +   +   +L  L +  N  +
Sbjct: 137 --------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 188
Query: 459 GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
           G++   +S C  LE L +S NN    IP  LG+ S+L  + ++ N L G           
Sbjct: 189 GDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
           L++L++S N   G +P     S +Q + L++N   G +         ++  LDLS N F 
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 579 GNIPYWXXXXXXXXXXXXXXXXXEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
           G +P +                  GE+P + L  ++ L+++DLS N   G++P  L N S
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 638 -----LHNNGDNV-GSSAPTFNPNRRTTY---------FVGPSILEKEESIMFTTKEISF 682
                L  + +N  G   P    N + T          F G             +  +SF
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 683 SYKGK-------PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS 735
           +Y           L+K+  + L  N L GEIP ++  +  +  L    N+LTG IP   S
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 736 NLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           N   +  + +S+N L G+IP  +  L  L +  +++N+ S 
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 57/273 (20%)
Query: 485 IPARLGNLSSLNDIMMAS-NHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
           IP+ L NL  LN + +   N+L GPIP    +L  L  L ++  N+SG++P       + 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-----LS 122
Query: 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEG 603
           Q+                    ++VTLD SYN+ SG +P                    G
Sbjct: 123 QIK-------------------TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 604 EVPNQLCGLKQL-RLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFV 662
            +P+      +L   + +S N L G+IP                   PTF         +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIP-------------------PTFANLNLAFVDL 204
Query: 663 GPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFS 722
             ++LE + S++F + +               + L+ N L  ++  ++G   N+  L+  
Sbjct: 205 SRNMLEGDASVLFGSDK-----------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252
Query: 723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
           +N + G +P   + L  + SL+VS NNL G+IP
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 700 NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV 759
           N L G IPP I KLT +  L  +H N++G IP   S +  + +LD S+N L+G +PP + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 760 ELNALVVFSVAHNNLSAA 777
            L  LV  +   N +S A
Sbjct: 147 SLPNLVGITFDGNRISGA 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	829
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-131
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  407 bits (1049), Expect = e-131
 Identities = 184/827 (22%), Positives = 303/827 (36%), Gaps = 188/827 (22%)

Query: 20  GCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKR 79
             L +E   L+  K     D   L +W    ++ + C ++GV C     +V ++ LSS  
Sbjct: 8   QSLYREIHQLISFKD-VLPDKNLLPDW---SSNKNPCTFDGVTCRD--DKVTSIDLSS-- 59

Query: 80  QFLYSTAGQLNASL----------------------LTPFQQLETLHLDSNNIAG----- 112
           + L      +++SL                            L +L L  N+++G     
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 113 ------------------FVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA---GLSS 151
                                 G +     L+ L++L+L  N  + +         G   
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 152 LRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR 211
           L+ L++  N++ G +D    +    NLE L +  ++    I   +   ++L+ L I   +
Sbjct: 180 LKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234

Query: 212 VDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP----------CLYLNQLTGNISSSPLI 261
           + G        +     L+ L++  N   G +P           L  N+ TG I      
Sbjct: 235 LSGDF---SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG 291

Query: 262 HLTSIERLFLSYNQF--QIPFSLEPFFNLSKLKV-------FSGEFNEIYVEPESSHSTT 312
              ++  L LS N F   +P       + S L+        FSGE       P  +    
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFF---GSCSLLESLALSSNNFSGEL------PMDTLLKM 342

Query: 313 PKFQLESVSLSGSDIHATFPKFLYN-QHDLELVDFSDSNLKGEFPNWLLKNN-PNLSTLV 370
               L+ + LS ++     P+ L N    L  +D S +N  G     L +N    L  L 
Sbjct: 343 RG--LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 371 LRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
           L+NN  +G     +     L +LH+S N+  G IP  +G             L  L L  
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG---------SLSKLRDLKLWL 451

Query: 431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
           N L G++  +  Y++ L  L LD N  TGEIP  LSNC+ L  + +S+N L G IP  +G
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 491 NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
            L +L  + +++N   G IP E      L  LDL+ N  +G++P+               
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-------------- 557

Query: 551 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN--NLEGEVPNQ 608
                      F +S      ++ N  +G    +I+     +    A N    +G    Q
Sbjct: 558 ----------MFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 609 LCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILE 668
           L  L      ++++    G      DN                                 
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDN--------------------------------- 630

Query: 669 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG 728
                                  M  +D+S N L+G IP +IG +  +  LN  HN+++G
Sbjct: 631 --------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            IP    +L  +  LD+S N L+G+IP  +  L  L    +++NNLS
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  265 bits (679), Expect = 3e-77
 Identities = 141/569 (24%), Positives = 224/569 (39%), Gaps = 77/569 (13%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
              L+ L +  N ++G         +S  ++LKLLN+  N F   I      L SL+ LS
Sbjct: 222 CSALQHLDISGNKLSGDFSRA----ISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  N+  G I           L  L L  +  + ++     + + L+ L++ +    G L
Sbjct: 276 LAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPC-------------LYLNQLTGNISSS-PLIH 262
               + L ++  L+ L +  N+  G LP              L  N  +G I  +     
Sbjct: 335 --PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 263 LTSIERLFLSYNQF--QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV 320
             +++ L+L  N F  +IP +L    N S+L      FN                     
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTL---SNCSELVSLHLSFN--------------------- 428

Query: 321 SLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPF 380
            LSG     T P  L +   L  +    + L+GE P  L      L TL+L  N L+G  
Sbjct: 429 YLSG-----TIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEI 482

Query: 381 QTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSK 440
            + +    +L+ + +S N   G IP  IG            NL  L LS NS  G + ++
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGR---------LENLAILKLSNNSFSGNIPAE 533

Query: 441 KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM 500
               R L  L L+ N F G IP ++   S      ++ N + G     + N     +   
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHG 589

Query: 501 ASNHLQ--GPIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLK 557
           A N L+  G    +  +L+     +++     G       ++ ++  + +S NML G + 
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL 617
                +   +  L+L +N  SG+IP  +  L  L  L L++N L+G +P  +  L  L  
Sbjct: 650 -KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 618 IDLSNNNLFGQIPGC-----LDNTSLHNN 641
           IDLSNNNL G IP              NN
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (416), Expect = 5e-42
 Identities = 98/440 (22%), Positives = 158/440 (35%), Gaps = 91/440 (20%)

Query: 87  GQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL 146
           G+L  SL      L TL L SNN +G +     +  +  + L+ L L  N F   I  +L
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTL 414

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLS 206
           +  S L +L L +N L G+I    +L + + L DL L  + L   I + +    +L+ L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 207 IQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC----------LYL--NQLTGN 254
           +    + G +     GL    +L  + +  N L G +P           L L  N  +GN
Sbjct: 473 LDFNDLTGEI---PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 255 ISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTT 312
           I +  L    S+  L L+ N F   IP ++   F  S                       
Sbjct: 530 IPAE-LGDCRSLIWLDLNTNLFNGTIPAAM---FKQSGK--------------------- 564

Query: 313 PKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDS--NLKGEFPNWLLKNNPNLSTLV 370
                    ++ + I      ++ N    +    + +    +G     L       +   
Sbjct: 565 ---------IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCN 614

Query: 371 LRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
           + +    G        +  +  L +S N   G IP EIG             L  L L  
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG---------SMPYLFILNLGH 665

Query: 431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
           N +                        +G IP  + +   L  L +S N L G IP  + 
Sbjct: 666 NDI------------------------SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 491 NLSSLNDIMMASNHLQGPIP 510
            L+ L +I +++N+L GPIP
Sbjct: 702 ALTMLTEIDLSNNNLSGPIP 721

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  246 bits (629), Expect = 5e-71
 Identities = 117/704 (16%), Positives = 213/704 (30%), Gaps = 113/704 (16%)

Query: 99  QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLG 158
             E        +    ++         + + +LNL  N       ++    S L +L +G
Sbjct: 5   SHEVADCSHLKLTQVPDDL-------PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 159 YNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGD 218
           +N +       E       L+ L L ++ L                              
Sbjct: 58  FNTISKLEP--ELCQKLPMLKVLNLQHNELSQLS-------------------------- 89

Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQI 278
            ++      +L ELH+  N ++              I ++P +   ++  L LS+N    
Sbjct: 90  -DKTFAFCTNLTELHLMSNSIQK-------------IKNNPFVKQKNLITLDLSHNGLSS 135

Query: 279 PFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQ 338
              L     L  L+      N+I               L+ + LS + I    P   +  
Sbjct: 136 -TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 339 HDLELVDFSDSNLKGEFPNWLLK--NNPNLSTLVLRNNSLSGPFQTPIQ--PHWHLDALH 394
             L  +  ++  L       L     N ++  L L N+ LS    T        +L  L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---QLFSKKNYLRKL---- 447
           +S N                        LEY  L  N++             +R L    
Sbjct: 255 LSYNNLNVVGNDSFA---------WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 448 --ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL 505
              +  +           S      LE L M DN++ G        L +L  + ++++  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 506 QGPIP----LEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLKYGT 560
                          + L IL+L++N IS       S    ++ + L  N +   L    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG--EVPNQLCGLKQLRLI 618
           +    +I  + LSYN +          +  L+ L+L    L+     P+    L+ L ++
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 619 DLSNNNLFGQIPGCLDNTS------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEES 672
           DLSNNN+       L+         L +N  N+       NP     +            
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHN--NLARLWKHANPGGPIYFL----------- 532

Query: 673 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV 732
                         K L+ ++ ++L  N            L  ++ ++   NNL  +   
Sbjct: 533 --------------KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 733 SFSNLNQVESLDVSHNNLNGKIPPQL-VELNALVVFSVAHNNLS 775
            F+N   ++SL++  N +              L    +  N   
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (566), Expect = 3e-62
 Identities = 106/562 (18%), Positives = 183/562 (32%), Gaps = 56/562 (9%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           QL+         L  LHL SN+I     N           L  L+L  N  +++   +  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            L +L+ L L  N+++     +  +   ++L+ L L  + +         A   L  L +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
            N ++  +L +          ++ L +  + L  T    +L            +  T++ 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-----------LKWTNLT 251

Query: 268 RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327
            L LSYN   +    + F  L +L+ F  E+N I      S       +           
Sbjct: 252 MLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR----------- 299

Query: 328 HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH 387
                 +L  +        S ++L     ++  +    L  L + +N + G         
Sbjct: 300 ------YLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---QLFSKKNYL 444
            +L  L +S +F        +       LA     L  L L++N +       FS    L
Sbjct: 353 INLKYLSLSNSFTSLR---TLTNETFVSLAHS--PLHILNLTKNKISKIESDAFSW---L 404

Query: 445 RKLARLHLDANYFTGEIPKS-LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASN 503
             L  L L  N    E+          +  +Y+S N            + SL  +M+   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 504 HLQG--PIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNML-------Y 553
            L+     P  F  L  L ILDLS NNI+            ++ + L  N L        
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLK 613
                      S +  L+L  N F        + L  L+ + L  NNL     +      
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 614 QLRLIDLSNNNLFGQIPGCLDN 635
            L+ ++L  N +          
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  182 bits (463), Expect = 2e-48
 Identities = 107/587 (18%), Positives = 178/587 (30%), Gaps = 69/587 (11%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA- 147
           +  +     + L TL L  N ++             L  L+ L L  N         L  
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDI 167

Query: 148 -GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLK 203
              SSL+ L L  N++K              L  L L+   L  S+ + +      TS++
Sbjct: 168 FANSSLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHL 263
            LS+ N ++     +      +  +L  L +  N+L               + +     L
Sbjct: 226 NLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNV-------------VGNDSFAWL 271

Query: 264 TSIERLFLSYNQFQ--IPFSLEPFFNLSKL------KVFSGEFNEIYVEPESSHSTTPKF 315
             +E  FL YN  Q     SL   FN+  L         S     +    + S       
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC- 330

Query: 316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLK-GEFPNWLLKN--NPNLSTLVLR 372
            LE +++  +DI            +L+ +  S+S        N    +  +  L  L L 
Sbjct: 331 -LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 373 NNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENS 432
            N +S           HL+ L +  N     +              G  N+  + LS N 
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELT--------GQEWRGLENIFEIYLSYNK 441

Query: 433 LHG---QLFSKKNYLRKLARLHLDANYFTG--EIPKSLSNCSRLEGLYMSDNNLYGNIPA 487
                   F+    +  L RL L           P        L  L +S+NN+      
Sbjct: 442 YLQLTRNSFAL---VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 488 RLGNLSSLNDIMMASNHLQ--------GPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            L  L  L  + +  N+L         G        L++L IL+L  N            
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 540 ST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIR-LRYLILA 597
              ++ + L  N L   L    F N+ S+ +L+L  N  +           R L  L + 
Sbjct: 559 LFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQI----PGCLDNTSLHN 640
            N  +    +    +  +     +   L        P       +  
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRL 664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (460), Expect = 5e-48
 Identities = 85/545 (15%), Positives = 179/545 (32%), Gaps = 98/545 (17%)

Query: 264 TSIERLFLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSL 322
            S E    S+ +  Q+P  L      + + V +   N++   P ++ +     QL S+ +
Sbjct: 4   VSHEVADCSHLKLTQVPDDL-----PTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDV 56

Query: 323 SGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT 382
             + I    P+       L++++   + L             NL+ L L +NS+      
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNSIQKIKNN 115

Query: 383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---QLFS 439
           P     +L  L +S N                       NL+ L+LS N +     +   
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQV---------QLENLQELLLSNNKIQALKSEELD 166

Query: 440 KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG---NLSSLN 496
                  L +L L +N      P       RL GL++++  L  ++  +L      +S+ 
Sbjct: 167 IFA-NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 497 DIMMASNHLQGPIPLEFCQLNY--LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYG 554
           ++ ++++ L       F  L +  L +LDLS NN++                        
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-------------------- 265

Query: 555 PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN---------NLEGEV 605
                +F     +    L YN+      + +  L  +RYL L  +         +L    
Sbjct: 266 ----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNGDNVGSSAPTFNPNRRTT 659
                 LK L  +++ +N++ G                L N+  ++ +            
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT------------ 369

Query: 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRAL 719
                                + ++     + ++ ++L+ NK++         L ++  L
Sbjct: 370 -------------------LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 720 NFSHNNLTGVIPVS-FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE 778
           +   N +   +    +  L  +  + +S+N            + +L    +    L   +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 779 RNPGP 783
            +P P
Sbjct: 471 SSPSP 475

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (442), Expect = 9e-46
 Identities = 105/546 (19%), Positives = 188/546 (34%), Gaps = 70/546 (12%)

Query: 99  QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA---GLSSLRTL 155
            L+ L L SN I  F           + +L  L L       S+   L      +S+R L
Sbjct: 172 SLKKLELSSNQIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA 215
           SL  ++L  + +       +TNL  L L Y++L++    S A    L+   ++   +   
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQ 275
                  L  L +++ L++  +  + ++    L  L   I       L  +E L +  N 
Sbjct: 288 ---FSHSLHGLFNVRYLNLKRSFTKQSIS---LASLPK-IDDFSFQWLKCLEHLNMEDND 340

Query: 276 FQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSH--STTPKFQLESVSLSGSDIHATFPK 333
                    F  L  LK  S   +   +   ++    +     L  ++L+ + I      
Sbjct: 341 IPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDAL 393
                  LE++D   + +  E      +   N+  + L  N                   
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--------------- 444

Query: 394 HVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK--NYLRKLARLH 451
            +++N F                     +L+ L+L   +L     S      LR L  L 
Sbjct: 445 -LTRNSFAL-----------------VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 452 LDANYFTGEIPKSLSNCSRLEGLYMSDNNL--------YGNIPARLGNLSSLNDIMMASN 503
           L  N         L    +LE L +  NNL         G     L  LS L+ + + SN
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH-STIQQVHLSKNMLYGPLKYGTFF 562
                    F  L  L+I+DL  NN++    S  ++  +++ ++L KN++    K     
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL------KQLR 616
              ++  LD+ +N F       I     + ++   + N+     + LC          +R
Sbjct: 607 AFRNLTELDMRFNPFDCTCES-IAWF--VNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663

Query: 617 LIDLSN 622
           L D S+
Sbjct: 664 LFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (273), Expect = 1e-24
 Identities = 54/318 (16%), Positives = 108/318 (33%), Gaps = 27/318 (8%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            + +++ T    L+ L L ++  +              S L +LNL +N  +     + +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            L  L  L LG N +   +   +      N+ ++ L Y+        S A   SL+RL +
Sbjct: 403 WLGHLEVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
           +   +   +         L +L  L +  N++               I+   L  L  +E
Sbjct: 462 RRVALKN-VDSSPSPFQPLRNLTILDLSNNNIAN-------------INDDMLEGLEKLE 507

Query: 268 RLFLSYNQFQ-------IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV 320
            L L +N              +     LS L + + E N     P          +L+ +
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF--ELKII 565

Query: 321 SLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPF 380
            L  ++++        NQ  L+ ++   + +             NL+ L +R N      
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC-- 623

Query: 381 QTPIQPHWHLDALHVSKN 398
            T     W ++ ++ +  
Sbjct: 624 -TCESIAWFVNWINETHT 640

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 8e-16
 Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 64/241 (26%)

Query: 564 RSSIVTLD---------------------LSYNSFSGNIPYWIERLIRLRYLILANNNLE 602
             S    D                     L++N           R  +L  L +  N + 
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNGDNVGSSAPTFNPNR 656
              P     L  L++++L +N L           +      L +N               
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-------------- 108

Query: 657 RTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNI 716
                     ++K ++  F                +  +DLS N L+        +L N+
Sbjct: 109 ----------IQKIKNNPF-----------VKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 717 RALNFSHNNLTGVIPVSFSNLNQV--ESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
           + L  S+N +  +             + L++S N +    P     +  L    + +  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 775 S 775
            
Sbjct: 208 G 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 2e-13
 Identities = 42/241 (17%), Positives = 72/241 (29%), Gaps = 44/241 (18%)

Query: 87  GQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFN--NSIFS 144
            +L        + +  ++L  N       N      + +  L+ L L R      +S  S
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNS----FALVPSLQRLMLRRVALKNVDSSPS 474

Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR 204
               L +L  L L  N +    D  + L+    LE L L +++L      +         
Sbjct: 475 PFQPLRNLTILDLSNNNIANIND--DMLEGLEKLEILDLQHNNLARLWKHANP------- 525

Query: 205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLT 264
                       G     L  L HL  L++  N                 I       L 
Sbjct: 526 ------------GGPIYFLKGLSHLHILNLESNGFDE-------------IPVEVFKDLF 560

Query: 265 SIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
            ++ + L  N    +P S+  F N   LK  + + N I    +       +  L  + + 
Sbjct: 561 ELKIIDLGLNNLNTLPASV--FNNQVSLKSLNLQKNLITSVEKKVFGPAFR-NLTELDMR 617

Query: 324 G 324
            
Sbjct: 618 F 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 84  STAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIF 143
                     L     L  L+L+SN                L +LK+++LG N  N    
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKIIDLGLNNLNTLPA 577

Query: 144 SSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISI 192
           S      SL++L+L  N +   ++ K     F NL +L + ++    + 
Sbjct: 578 SVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDCTC 625

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  216 bits (551), Expect = 7e-61
 Identities = 92/558 (16%), Positives = 179/558 (32%), Gaps = 69/558 (12%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGY 159
            + L L  N +                +L++L+L R         +   LS L TL L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 160 NRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDD 219
           N ++            ++L+ L    ++L       I    +LK L++ +  +       
Sbjct: 86  NPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKL 141

Query: 220 EEGLCRLGHLQELHMGGNDLRGTLPC----------------LYLNQLTGNISSSPLIHL 263
            E    L +L+ L +  N ++                     L LN +      +     
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKE 199

Query: 264 TSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
             + +L L  N   +         L+ L+V      E                      +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF--------------------RN 239

Query: 324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNW--LLKNNPNLSTLVLRNNSLSGPFQ 381
             ++       L    +L + +F  + L     +   L     N+S+  L + ++     
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-- 297

Query: 382 TPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK 441
                ++    L +    F     L++             +L+ L  + N      FS+ 
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLK------------SLKRLTFTSNKGGN-AFSEV 344

Query: 442 NYLRKLARLHLDAN--YFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499
           + L  L  L L  N   F G   +S    + L+ L +S N +   + +    L  L  + 
Sbjct: 345 D-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 500 MASNHLQGPIPLE-FCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLK 557
              ++L+       F  L  L  LD+S  +   +     +  S+++ + ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL 617
              F    ++  LDLS        P     L  L+ L +++NN           L  L++
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 618 IDLSNNNLFGQIPGCLDN 635
           +D S N++       L +
Sbjct: 523 LDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  195 bits (498), Expect = 1e-53
 Identities = 111/579 (19%), Positives = 200/579 (34%), Gaps = 54/579 (9%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            L +     F +L+ L L    I    +         LS L  L L  N   +    + +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLH-ISILKSIAAFTSLKRLS 206
           GLSSL+ L      L    +    + +   L++L + ++ +    + +  +  T+L+ L 
Sbjct: 98  GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 207 IQNGRVDGALGDDEEGLCRLGHLQ-ELHMGGNDLRGTLPC-----------LYLNQLTGN 254
           + + ++      D   L ++  L   L +  N +    P            L  N  + N
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 255 ISSSPLIHLTSIERLFLSYNQFQIPFSLE--PFFNLSKLKVFSGEFNEIYVEPESSHSTT 312
           +  + +  L  +E   L   +F+   +LE      L  L   + E   +           
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 313 PKFQ----LESVSLSGSDIHATFP-KFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLS 367
             F     + S SL    I       + +    LEL     +   G+FP   LK+   L+
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL----VNCKFGQFPTLKLKSLKRLT 331

Query: 368 TLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF--FQGNIPLEIGVYFPSHLAMGCFNLEY 425
               +  +              L+ L +S+N   F+G                G  +L+Y
Sbjct: 332 FTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF---------GTTSLKY 377

Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS-LSNCSRLEGLYMSDNNLYGN 484
           L LS N +   + S    L +L  L    +        S   +   L  L +S  +    
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLE-FCQLNYLEILDLSENNISGSLPSCSSHST-I 542
                  LSSL  + MA N  Q     + F +L  L  LDLS+  +    P+  +  + +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIR-LRYLILANNNL 601
           Q +++S N  +  L    +   +S+  LD S N    +    ++     L +L L  N+ 
Sbjct: 497 QVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 602 EGEVPNQ--LCGLKQLRLIDLSNNNLFGQIPGCLDNTSL 638
                +Q  L  +K  R + +    +    P       +
Sbjct: 556 ACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (468), Expect = 1e-49
 Identities = 93/610 (15%), Positives = 185/610 (30%), Gaps = 73/610 (11%)

Query: 175 FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHM 234
             + ++L L ++ L      S  +F  L+ L +    +      ++     L HL  L +
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLIL 83

Query: 235 GGNDLRGTLP------------CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSL 282
            GN ++                      L   + + P+ HL +++ L +++N  Q     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 283 EPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSL--SGSDIHATFPKFLYNQHD 340
           E F NL+ L+      N+I     +      +  L ++SL  S + ++   P        
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 341 LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFF 400
           L  +   ++          ++    L    L                  L+ L       
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 401 QGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGE 460
                L+  +     L     N+    L   ++        +Y      L L    F   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQF 319

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ--GPIPLEFCQLNY 518
               L +  RL     +  +  G       +L SL  + ++ N L   G           
Sbjct: 320 PTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
           L+ LDLS N +     +      ++ +    + L    ++  F +  +++ LD+S+    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 579 GNIPYWIERLIRLRYLILANNNLEGEV-PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
                    L  L  L +A N+ +    P+    L+ L  +DLS   L    P   ++ S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 638 ------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNK 691
                 + +N                             ++  +           K LN 
Sbjct: 495 SLQVLNMSHNN------------------------FFSLDTFPY-----------KCLNS 519

Query: 692 MYGVDLSCNKLTGEIPPQIGKL-TNIRALNFSHNNLTGVIPVS--FSNLNQVESLDVSHN 748
           +  +D S N +      ++    +++  LN + N+             +     L V   
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

Query: 749 NLNGKIPPQL 758
            +    P   
Sbjct: 580 RMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (445), Expect = 2e-46
 Identities = 101/545 (18%), Positives = 190/545 (34%), Gaps = 45/545 (8%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNN-SIFSSL 146
            L     +    L+ L     N+A          +  L  LK LN+  NL  +  +    
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLE--DLTLDYSSLHIS-ILKSIAAFTSLK 203
           + L++L  L L  N+++        L     +   +L+LD S   ++ I         L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHL 263
           +L+++N      +   +  +  L  L+   +   + R        N    + S+   +  
Sbjct: 204 KLTLRNNFDSLNV--MKTCIQGLAGLEVHRLVLGEFRN-----EGNLEKFDKSALEGLCN 256

Query: 264 TSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
            +IE   L+Y  + +   ++ F  L+ +  FS     I    + S++       + + L 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF----GWQHLELV 312

Query: 324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTP 383
                      L +   L        N   E       + P+L  L L  N LS      
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCS 366

Query: 384 IQPHW--HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL-FSK 440
                   L  L +S N     +             +G   LE+L    ++L     FS 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNF---------LGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 441 KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIM 499
              LR L  L +   +         +  S LE L M+ N+   N        L +L  + 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST-IQQVHLSKNMLYGPLKY 558
           ++   L+   P  F  L+ L++L++S NN              +Q +  S N +    K 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 559 GTFFNRSSIVTLDLSYNSFSGNIP--YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLR 616
                 SS+  L+L+ N F+       +++ +   R L++    +E   P+   G+  + 
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VL 595

Query: 617 LIDLS 621
            ++++
Sbjct: 596 SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (427), Expect = 3e-44
 Identities = 92/556 (16%), Positives = 179/556 (32%), Gaps = 85/556 (15%)

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYV 303
           L  N L    S S       ++ L LS  + Q   ++E   + +LS L       N I  
Sbjct: 35  LSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
               + S      L+ +    +++ +     + +   L+ ++ + + ++         N 
Sbjct: 91  LALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 364 PNLSTLVLRNNSLSGPFQTPIQP----HWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
            NL  L L +N +   + T ++          +L +S N      P              
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK---------- 198

Query: 420 CFNLEYLVLSENSLHGQLFSKK-NYLRKLARLHLDANYFTGEI---PKSLSNCSRLEGLY 475
              L  L L  N     +       L  L    L    F  E        S    L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 476 MSDNNL------YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNI 529
           + +  L        +I      L++++   + S  ++      +      + L+L     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF 316

Query: 530 SGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN--SFSGNIPYWIER 587
                       ++++  + N         +  +  S+  LDLS N  SF G        
Sbjct: 317 GQFPTLKLKS--LKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 588 LIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQI-PGCLDNTS------LHN 640
              L+YL L+ N +   + +   GL+QL  +D  ++NL          +        + +
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN 700
                                          + +F             L+ +  + ++ N
Sbjct: 431 TH------------------------TRVAFNGIFNG-----------LSSLEVLKMAGN 455

Query: 701 KLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV 759
                  P I  +L N+  L+ S   L  + P +F++L+ ++ L++SHNN          
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 760 ELNALVVFSVAHNNLS 775
            LN+L V   + N++ 
Sbjct: 516 CLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  165 bits (420), Expect = 3e-43
 Identities = 77/468 (16%), Positives = 148/468 (31%), Gaps = 45/468 (9%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
             + +D S + L+    ++   + P L  L L    +        Q   HL  L ++ N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 400 FQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG 459
            Q                 G  +L+ LV  E +L         +L+ L  L++  N    
Sbjct: 88  IQSLALGAFS---------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 460 -EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM----MASNHLQGPIPLEFC 514
            ++P+  SN + LE L +S N +       L  L  +  +     ++ N +    P  F 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 515 QLNYLEILDLSENNISGSLPSCS----SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 570
           ++  L  L L  N  S ++        +   + ++ L +    G L+         +  L
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 571 DLSYNSFS------GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
            +     +       +I      L  +    L +  +E             + ++L N  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNP-----------NRRTTYFVGPSILEKEESI 673
                   L +        N G +A +              N  +             S+
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 674 ----MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTG 728
               +     I+ S     L ++  +D   + L       +   L N+  L+ SH +   
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLS 775
                F+ L+ +E L ++ N+      P    EL  L    ++   L 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (347), Expect = 6e-34
 Identities = 60/343 (17%), Positives = 107/343 (31%), Gaps = 43/343 (12%)

Query: 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ 506
              L L  N        S  +   L+ L +S   +         +LS L+ +++  N +Q
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 507 GPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 566
                 F  L+ L+ L   E N++                                +  +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLEN------------------------FPIGHLKT 125

Query: 567 IVTLDLSYNSF-SGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL----IDLS 621
           +  L++++N   S  +P +   L  L +L L++N ++      L  L Q+ L    +DLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 622 NNNLFGQIPGCLDNTSLH-----NNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT 676
            N +    PG      LH     NN D++                     L   E     
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV----HRLVLGEFRNEG 241

Query: 677 TKEISFSYKGKPLNKMYGVDLSCNKL---TGEIPPQIGKLTNIRALNFSHNNLTGVIPVS 733
             E       + L  +   +     L     +I      LTN+ + +     +  V    
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299

Query: 734 FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           FS     + L++ +         +L  L  L   S    N  +
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 6e-11
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 9/159 (5%)

Query: 87  GQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIF-SS 145
                S+    + L  L +   +             +GLS L++L +  N F  +     
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 146 LAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRL 205
              L +L  L L   +L+         ++ ++L+ L + +++             SL+ L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 206 SIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244
                 +  +   + +       L  L++  ND   T  
Sbjct: 524 DYSLNHIMTSKKQELQHFPS--SLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
                     +IP  +    + + L+ S N L  +   SF +  +++ LD+S   +    
Sbjct: 12  YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 755 PPQLVELNALVVFSVAHNNLS 775
                 L+ L    +  N + 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQ 89

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 86  AGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSS 145
                  + T  + L  L L    +            + LS L++LN+  N F +     
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 146 LAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDY 185
              L+SL+ L    N +      +E     ++L  L L  
Sbjct: 514 YKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQ 552

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (486), Expect = 9e-55
 Identities = 76/350 (21%), Positives = 121/350 (34%), Gaps = 84/350 (24%)

Query: 428 LSENSLHGQLFSKKNYLRKLARLHLDANYFTGE--IPKSLSNCSRLEGLYMSD-NNLYGN 484
               +  G L        ++  L L          IP SL+N   L  LY+   NNL G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQ 544
           IP  +  L+ L+ + +   ++ G IP    Q+  L  LD S N +SG+LP          
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--------- 143

Query: 545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRL-RYLILANNNLEG 603
                          +  +  ++V +    N  SG IP       +L   + ++ N L G
Sbjct: 144 ---------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVG 663
           ++P     L  L  +DLS N L G       +                            
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------- 219

Query: 664 PSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSH 723
                                          + L+ N L  ++  ++G   N+  L+  +
Sbjct: 220 -------------------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

Query: 724 NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN 773
           N + G +P   + L  + SL+VS NNL G+IP     L    V + A+N 
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (466), Expect = 6e-52
 Identities = 64/332 (19%), Positives = 112/332 (33%), Gaps = 79/332 (23%)

Query: 460 EIPKSLSNCSRL----EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG--PIPLEF 513
           +I K L N + L          +    G +         +N++ ++  +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 514 CQLNYLEILDLS-ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572
             L YL  L +   NN+ G +P                              + +  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 573 SYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGC 632
           ++ + SG IP ++ ++  L  L  + N L G +P  +  L  L  I    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 633 LDNTS-------LHNNGDNVGSSAPTFNPNRRTTYFVG--PSILEKEESIMFTTKEISFS 683
             + S       +  N                     G  P               ++ +
Sbjct: 169 YGSFSKLFTSMTISRN------------------RLTGKIPPTFAN----------LNLA 200

Query: 684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESL 743
           +          VDLS N L G+     G   N + ++ + N+L   +         +  L
Sbjct: 201 F----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249

Query: 744 DVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
           D+ +N + G +P  L +L  L   +V+ NNL 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (459), Expect = 5e-51
 Identities = 69/346 (19%), Positives = 120/346 (34%), Gaps = 71/346 (20%)

Query: 391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKN--YLRKLA 448
                    + G +                + +  L LS  +L        +   L  L 
Sbjct: 29  PTTDCCNRTWLGVLCDTDT---------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79

Query: 449 RLHL-DANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG 507
            L++   N   G IP +++  ++L  LY++  N+ G IP  L  + +L  +  + N L G
Sbjct: 80  FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139

Query: 508 PIPLEFCQLNYLEILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRS 565
            +P     L  L  +    N ISG++P    S       + +S+N L G +     F   
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANL 197

Query: 566 SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           ++  +DLS N   G+           + + LA N+L  ++  ++   K L  +DL NN +
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

Query: 626 FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685
           +G +P  L                                                    
Sbjct: 257 YGTLPQGLTQ-------------------------------------------------- 266

Query: 686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP 731
              L  ++ +++S N L GEI PQ G L       +++N      P
Sbjct: 267 ---LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (420), Expect = 1e-45
 Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 39/293 (13%)

Query: 335 LYNQHDLELVDFSDSNLKGEFP-NWLLKNNPNLSTLVLRN-NSLSGPFQTPIQPHWHLDA 392
               + +  +D S  NL   +P    L N P L+ L +   N+L GP    I     L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 393 LHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHL 452
           L+++     G IP  +              L  L  S N+L G L    + L  L  +  
Sbjct: 106 LYITHTNVSGAIPDFLS---------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 453 DANYFTGEIPKSLSNCSRL-EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPL 511
           D N  +G IP S  + S+L   + +S N L G IP    NL+ L  + ++ N L+G   +
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

Query: 512 EFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLD 571
            F      + + L++N+++  L                                ++  LD
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGK-------------------------VGLSKNLNGLD 250

Query: 572 LSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           L  N   G +P  + +L  L  L ++ NNL GE+P     L++  +   +NN 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (288), Expect = 5e-28
 Identities = 69/304 (22%), Positives = 119/304 (39%), Gaps = 49/304 (16%)

Query: 19  EGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECN--TSTGRVKALYLS 76
           E C  Q++ ALL++K D   +P  L +W+   +  +   W GV C+  T T RV  L LS
Sbjct: 1   ELCNPQDKQALLQIKKDL-GNPTTLSSWLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDLS 58

Query: 77  SKRQFLYSTAGQLNASLLTP-----FQQLETLHL-DSNNIAGFVENGGLERLSGLSKLKL 130
                       L      P        L  L++   NN+ G +       ++ L++L  
Sbjct: 59  GL---------NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHY 105

Query: 131 LNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI 190
           L +     + +I   L+ + +L TL   YN L G++    ++ +  NL  +T D + +  
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISG 163

Query: 191 SILKSIAAFTSLKR-LSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC---- 245
           +I  S  +F+ L   ++I   R+ G +         L +L  + +  N L G        
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPT---FANL-NLAFVDLSRNMLEGDASVLFGS 219

Query: 246 --------LYLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNLSKLKVFS 295
                   L  N L  ++    +    ++  L L  N+    +P  L     L  L   +
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLN 274

Query: 296 GEFN 299
             FN
Sbjct: 275 VSFN 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (501), Expect = 7e-54
 Identities = 89/681 (13%), Positives = 178/681 (26%), Gaps = 160/681 (23%)

Query: 122 LSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDL 181
           L+   ++  L+L     +  +  ++  L+ L  L+LG +  K +                
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE--------------- 121

Query: 182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241
                   +   K I+A  S ++                  +          +  + +  
Sbjct: 122 -------RLFGPKGISANMSDEQKQKMRMHYQKTF------VDYDPREDFSDLIKDCINS 168

Query: 242 TLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNE 300
                  +    +I  S         ++    N    +  +      L+KL+ F    + 
Sbjct: 169 -------DPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSP 217

Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLL 360
                    +       E+ +   +  + T      N  DL  V+  +     + P +L 
Sbjct: 218 F-------VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 361 KNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGC 420
           K  P +  + +  N      Q                         +             
Sbjct: 270 KALPEMQLINVACNRGISGEQLK----------------DDWQALADAP---------VG 304

Query: 421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN 480
             ++ + +  N+L                        T  +  SL    +L  L    N 
Sbjct: 305 EKIQIIYIGYNNLK-----------------------TFPVETSLQKMKKLGMLECLYNQ 341

Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG--SLPSCSS 538
           L G +PA  G+   L  + +A N +             +E L  + N +    ++    S
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 539 HSTIQQVHLSKNMLYGPLKYG------TFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR 592
            S +  +  S N +             T F   ++ +++LS N  S            L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 593 YLILANNNLEG-------EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL------- 638
            + L  N L         +          L  IDL  N L  ++      T+L       
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGID 519

Query: 639 --HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT--KEISFSYKGKPLNKMYG 694
             +N+                                 F+    +   S   K       
Sbjct: 520 LSYNS---------------------------------FSKFPTQPLNSSTLKGFGIRNQ 546

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
            D   N+   E P  I    ++  L    N++  V      N+     LD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISID 603

Query: 755 PPQLVELNALVVFSVAHNNLS 775
              +       ++ + ++   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (461), Expect = 2e-48
 Identities = 82/631 (12%), Positives = 177/631 (28%), Gaps = 101/631 (16%)

Query: 45  NWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASL---LTPFQQLE 101
           NW  ++         GV  N S GRV  L L              +  +   +    +LE
Sbjct: 59  NWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGF---------GASGRVPDAIGQLTELE 108

Query: 102 TLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNR 161
            L L S+         G + +S     +     R  +  +             +    N 
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168

Query: 162 LKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEE 221
                 +K++         +    +++           T +                  +
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNI-----------TFV-----------------SK 200

Query: 222 GLCRLGHLQELHMGGNDLRGTLPC-------LYLNQLTGNISSSPLIHLTSIERLFLSYN 274
            + RL  L++ +MG +       C           Q           +L  +  + +   
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-WDNLKDLTDVEVYNC 259

Query: 275 QF--QIPFSLEPFFNLSKLKVFS------GEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326
               ++P  L     L ++++ +          ++  + ++        +++ + +  ++
Sbjct: 260 PNLTKLPTFL---KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 327 IHA-TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG-PFQTPI 384
           +        L     L +++   + L+G+ P     +   L++L L  N ++  P     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCG 374

Query: 385 QPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG-CFNLEYLVLSENSLHG-------Q 436
                ++ L  + N  +           P+         +  +  S N +          
Sbjct: 375 FTE-QVENLSFAHNKLKY---------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 437 LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL-------YGNIPARL 489
           L         ++ ++L  N  +    +  S  S L  + +  N L         +     
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 490 GNLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNIS------GSLPSCSSHSTI 542
            N   L  I +  N L           L YL  +DLS N+ S       +  +       
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544

Query: 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE 602
            Q     N               S+  L +  N     +   I     +  L + +N   
Sbjct: 545 NQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNI 600

Query: 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL 633
               + +C   +  +  L  +     I GC 
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKT-QDIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (346), Expect = 1e-33
 Identities = 62/473 (13%), Positives = 131/473 (27%), Gaps = 79/473 (16%)

Query: 98  QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSL 157
            +L   ++ ++              +     +  N        +       L  L  + +
Sbjct: 206 TKLRQFYMGNSPFVA---------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLTLDYSSLH--------ISILKSIAAFTSLKRLSIQN 209
                   +     L     ++ + +  +              L        ++ + I  
Sbjct: 257 YNCPNLTKLP--TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC---------LYL--NQLTGNISSS 258
             +       E  L ++  L  L    N L G LP          L L  NQ+T  I ++
Sbjct: 315 NNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 259 PLIHLTSIERLFLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQL 317
                  +E L  ++N+   IP   +   ++S +      +NEI                
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSYNEI---------------- 414

Query: 318 ESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
                             +   ++  ++ S++ +   FP  L      LS++ L  N L+
Sbjct: 415 ---GSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT 470

Query: 378 GPFQTPIQPHW-------HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
              +  ++           L ++ +  N     +  +               L  + LS 
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT-------TLPYLVGIDLSY 522

Query: 431 NSLHG---QLFSKKN--YLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
           NS      Q  +           +     N    E P+ ++ C  L  L +  N++    
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582

Query: 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSS 538
                N+S L+   +  N          C      +  L  +     +  C +
Sbjct: 583 EKITPNISVLD---IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  126 bits (318), Expect = 3e-30
 Identities = 41/339 (12%), Positives = 100/339 (29%), Gaps = 53/339 (15%)

Query: 453 DANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP---- 508
           + + +  +   SL++  R+ GL +      G +P  +G L+ L  + + S+  +      
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 509 IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
            P         E       +   +                                S ++
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF----------------------SDLI 162

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628
              ++ +    +I       ++   +   +NN+   V   +  L +LR   + N+    +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 629 IPGCLDNTSLHNNGDNVGSSAPTFN--PNRRTTYFVGPSILEK-EESIMFTTKEISFSYK 685
                             +    ++   +           L K    +            
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL------------ 269

Query: 686 GKPLNKMYGVDLSCNKLT--------GEIPPQIGKLTNIRALNFSHNNLTGV-IPVSFSN 736
              L +M  ++++CN+           +          I+ +   +NNL    +  S   
Sbjct: 270 KA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 737 LNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
           + ++  L+  +N L G   P       L   ++A+N ++
Sbjct: 329 MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (257), Expect = 1e-22
 Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG----EVPNQLCGLKQLRLI 618
           +   +  L L     SG +P  I +L  L  L L ++  +       P  +         
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 619 DLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678
                +               +   +  +S P                ++K   I     
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS------------IKKSSRITLKDT 186

Query: 679 EISFSYKG--------KPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI 730
           +I                L K+    +  +    E   +  +       N  +       
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTE 241

Query: 731 PVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPG 782
            + + NL  +  ++V +     K+P  L  L  + + +VA N   + E+   
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.6 bits (241), Expect = 8e-21
 Identities = 31/316 (9%), Positives = 80/316 (25%), Gaps = 78/316 (24%)

Query: 477 SDNNLYGNIP-ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS 535
            + +++G  P   L +   +  + +      G +P    QL  LE+L L  +    +   
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 536 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLI--RLRY 593
                                         S          +      +  R     L  
Sbjct: 124 FGPKG--------------------ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 594 LILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNGDNVGS 647
             + ++  +  +        +   I   +NN+   +   +   +      + N+      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS------ 216

Query: 648 SAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 707
                        FV  +I E  E+                       +    +      
Sbjct: 217 ------------PFVAENICEAWEN----------------------ENSEYAQQYKTED 242

Query: 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL--------NGKIPPQLV 759
            +   L ++  +   +      +P     L +++ ++V+ N          + +      
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 760 ELNALVVFSVAHNNLS 775
               + +  + +NNL 
Sbjct: 303 VGEKIQIIYIGYNNLK 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 18/158 (11%)

Query: 98  QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSL 157
             L ++ L  N +    ++      + L  L  ++L  N F+    +     S+L+   +
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRA---TTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGI 543

Query: 158 G------YNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR 211
                   NR        E +    +L  L +  + +   + + I    ++  L I++  
Sbjct: 544 RNQRDAQGNRTLREWP--EGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNP 598

Query: 212 VDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLN 249
               +  D   +C         +  +  +    C  L+
Sbjct: 599 N---ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAER 779
           N   +       VS ++  +V  L +     +G++P  + +L  L V ++  +     ER
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 780 NPGPYCL 786
             GP  +
Sbjct: 123 LFGPKGI 129

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (477), Expect = 8e-51
 Identities = 109/644 (16%), Positives = 205/644 (31%), Gaps = 130/644 (20%)

Query: 125 LSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLD 184
            +  + L    N+      ++ + L +L  L L   ++    +  +T  +   L+ L L 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE--DTFQSQHRLDTLVLT 89

Query: 185 YSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244
            + L                               E  L     L+ L      +     
Sbjct: 90  ANPLIFMA---------------------------ETALSGPKALKHLFFIQTGISS--- 119

Query: 245 CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE 304
                     I   PL +  ++E L+L  N       L   F   KLKV   + N I+  
Sbjct: 120 ----------IDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN- 363
            +   S+  +    S++L+G+DI        ++    + ++F  +         L  +  
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 364 PNLSTLVLRNNSLSGPFQTPIQ--PHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
            +L      +           +      ++++++ K++F                     
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH---------CFS 278

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
            L+ L L+   L  +L S    L  L +L L AN F      S SN   L  L +  N  
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 482 YGNIPAR-LGNLSSLNDIMMASNHLQ--GPIPLEFCQLNYLEILDLSENNISGSLPSCSS 538
              +    L NL +L ++ ++ + ++      L+   L++L+ L+LS N           
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS------- 390

Query: 539 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLIRLRYLILA 597
                            LK   F     +  LDL++            + L  L+ L L+
Sbjct: 391 -----------------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS---------LHNNGDNVGSS 648
           ++ L+        GL  L+ ++L  N+         ++           L          
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD------ 487

Query: 649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 708
                             L   +   F             L  M  VDLS N+LT     
Sbjct: 488 ------------------LSSIDQHAF-----------TSLKMMNHVDLSHNRLTSSSIE 518

Query: 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752
            +  L  I  LN + N+++ ++P     L+Q  ++++  N L+ 
Sbjct: 519 ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (476), Expect = 1e-50
 Identities = 99/546 (18%), Positives = 172/546 (31%), Gaps = 41/546 (7%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGY 159
            E L    N +            S L  L  L+L R         +      L TL L  
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 160 NRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDD 219
           N L    +    L     L+ L    + +       +    +L+ L + +  +       
Sbjct: 91  NPLIFMAE--TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI---K 145

Query: 220 EEGLCRLGHLQELHMGGNDLRG----------TLPCLYLNQLTGNISSSP--LIHLTSIE 267
                    L+ L    N +                L LN    +I+            +
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 268 RLFLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326
            L     Q   + F       +  L + + E  +      +      +  +ES++L    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 327 IHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQP 386
                    +    L+ +D + ++L  E P+ L      L  LVL  N      Q     
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASN 323

Query: 387 HWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK--NYL 444
              L  L +  N  +  +           L     NL  L LS + +            L
Sbjct: 324 FPSLTHLSIKGNTKRLELG-------TGCLE-NLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 445 RKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP-ARLGNLSSLNDIMMASN 503
             L  L+L  N       ++   C +LE L ++   L      +   NL  L  + ++ +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSC----SSHSTIQQVHLSKNMLYGPLKYG 559
            L       F  L  L+ L+L  N+             +   ++ + LS   L   +   
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQH 494

Query: 560 TFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID 619
            F +   +  +DLS+N  + +    +  L  + YL LA+N++   +P+ L  L Q R I+
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553

Query: 620 LSNNNL 625
           L  N L
Sbjct: 554 LRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  178 bits (453), Expect = 1e-47
 Identities = 92/548 (16%), Positives = 166/548 (30%), Gaps = 49/548 (8%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            +  + L+  + L+ L      I+          L     L+ L LG N  ++       
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS-ILKSIAAFTSLKRLS 206
               L+ L    N +      KE + +     +L+L+ +   I+ I          + L+
Sbjct: 151 PTEKLKVLDFQNNAIHYLS--KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 207 IQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSI 266
               +    +         +  L        D     P           +    +   S+
Sbjct: 209 FGGTQNLLVI-FKGLKNSTIQSLWLGTFEDMDDEDISP-----------AVFEGLCEMSV 256

Query: 267 ERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSG 324
           E + L  + F   F++    F   S L+        +   P      +    L+ + LS 
Sbjct: 257 ESINLQKHYF---FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS---TLKKLVLSA 310

Query: 325 SDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPI 384
           +           N   L  +    +  + E     L+N  NL  L L ++ +       +
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 385 QPHW--HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG-QLFSKK 441
           Q     HL +L++S N               +     C  LE L L+   L      S  
Sbjct: 371 QLRNLSHLQSLNLSYNEPLS---------LKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 442 NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI---PARLGNLSSLNDI 498
             L  L  L+L  +       +       L+ L +  N+           L  L  L  +
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 499 MMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKY 558
           +++   L       F  L  +  +DLS N ++ S     SH     ++L+ N +   +  
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILP 540

Query: 559 GTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLC-GLKQLRL 617
                 S   T++L  N             I        N     +  + LC     LR 
Sbjct: 541 SLLPILSQQRTINLRQNPLDCTC-----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595

Query: 618 IDLSNNNL 625
           + LS+  L
Sbjct: 596 VRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (401), Expect = 8e-41
 Identities = 93/541 (17%), Positives = 171/541 (31%), Gaps = 69/541 (12%)

Query: 254 NISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHST 311
            ++  P     S E L  S+N      +++   F  L  L        +IY   E +  +
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLP---TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

Query: 312 TPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVL 371
               +L+++ L+ + +       L     L+ + F  + +        L N   L +L L
Sbjct: 80  QH--RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYL 136

Query: 372 RNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN 431
            +N +S        P   L  L    N        ++                 L L+ N
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQA-----TNLSLNLNGN 189

Query: 432 SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS--RLEGLYMSDNNLYGNIPARL 489
            +   +            L+         I K L N +   L      D +     PA  
Sbjct: 190 DI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 490 GNLSSLN--DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL 547
             L  ++   I +  ++        F   + L+ LDL+  ++S         ST++++ L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308

Query: 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI-PYWIERLIRLRYLILANNNLE--GE 604
           S N     L   +  N  S+  L +  N+    +    +E L  LR L L+++++E    
Sbjct: 309 SANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN-TSL------HNNGDNVGSSAPTFNPNRR 657
              QL  L  L+ ++LS N               L              + +P       
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP------- 420

Query: 658 TTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR 717
              F    +L+                          ++LS + L          L  ++
Sbjct: 421 ---FQNLHLLKV-------------------------LNLSHSLLDISSEQLFDGLPALQ 452

Query: 718 ALNFSHNNLTGVIPV---SFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
            LN   N+          S   L ++E L +S  +L+         L  +    ++HN L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 775 S 775
           +
Sbjct: 513 T 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (386), Expect = 7e-39
 Identities = 81/481 (16%), Positives = 157/481 (32%), Gaps = 54/481 (11%)

Query: 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP 364
             S      K   ++ +     ++   P  L N    E ++FS + L     N       
Sbjct: 2   TSSDQKCIEKEVNKTYNCENLGLNE-IPGTLPN--STECLEFSFNVLP-TIQNTTFSRLI 57

Query: 365 NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLE 424
           NL+ L L    +    +   Q    LD L ++ N                    G   L+
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF---------MAETALSGPKALK 108

Query: 425 YLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN 484
           +L   +  +    F   +  + L  L+L +N+ +           +L+ L   +N ++  
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 485 IPARLGNLSSLNDIM--MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTI 542
               + +L    ++   +  N + G I          + L+         +     +STI
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 543 QQVH---LSKNMLYGPLKYGTF--FNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA 597
           Q +                  F      S+ +++L  + F             L+ L L 
Sbjct: 228 QSLWLGTFEDMDDEDISP-AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRR 657
             +L  E+P+ L GL  L+ + LS N           N                  P+  
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-----------------PSLT 328

Query: 658 TTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT--GEIPPQIGKLTN 715
                G +   +  +              + L  +  +DLS + +        Q+  L++
Sbjct: 329 HLSIKGNTKRLELGTGCL-----------ENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 716 IRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP-QLVELNALVVFSVAHNNL 774
           +++LN S+N    +   +F    Q+E LD++   L  K        L+ L V +++H+ L
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 775 S 775
            
Sbjct: 438 D 438

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  141 bits (357), Expect = 3e-35
 Identities = 48/349 (13%), Positives = 113/349 (32%), Gaps = 26/349 (7%)

Query: 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ 506
              L    N        + S    L  L ++   +Y        +   L+ +++ +N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 507 GPIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRS 565
                       L+ L   +  IS        +  T++ ++L  N +   +K    F   
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTE 153

Query: 566 SIVTLDLSYNSFSGNIPYWIERLIRLR--YLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
            +  LD   N+        +  L +     L L  N++   +          + ++    
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGT 212

Query: 624 NLFGQIPGCLDNTSL---------HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIM 674
                I   L N+++           + +++  +                  +  ++   
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES------INLQKHYF 266

Query: 675 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF 734
           F     +F       + +  +DL+   L+ E+P  +  L+ ++ L  S N    +  +S 
Sbjct: 267 FNISSNTFH----CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 735 SNLNQVESLDVSHNNLNGKIPPQLVE-LNALVVFSVAHNNLSAAERNPG 782
           SN   +  L +  N    ++    +E L  L    ++H+++  ++    
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 5e-18
 Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 20/242 (8%)

Query: 87  GQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL 146
            +L    L   + L  L L  ++I           L  LS L+ LNL  N   +    + 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLS 206
                L  L L + RLK   D +    N   L+ L L +S L IS  +      +L+ L+
Sbjct: 397 KECPQLELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 207 IQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSI 266
           +Q              L  LG L+ L +   DL               I       L  +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-------------IDQHAFTSLKMM 502

Query: 267 ERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326
             + LS+N+     S+E   +L  +   +   N I +   S        Q  +++L  + 
Sbjct: 503 NHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILS--QQRTINLRQNP 558

Query: 327 IH 328
           + 
Sbjct: 559 LD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 8e-14
 Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 55/218 (25%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           +S   L+ S+N           RLI L +L L    +     +      +L  + L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
           L                                     GP  L+                
Sbjct: 93  LIFMAETA----------------------------LSGPKALKH--------------- 109

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLD 744
                     +      ++      +     + +L    N+++ +         +++ LD
Sbjct: 110 ----------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 745 VSHNNLNGKIPPQLVELNAL--VVFSVAHNNLSAAERN 780
             +N ++      +  L     +  ++  N+++  E  
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  189 bits (482), Expect = 3e-50
 Identities = 89/664 (13%), Positives = 172/664 (25%), Gaps = 146/664 (21%)

Query: 131 LNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI 190
            N   +++ +     L     +  LSL     KG +   + +   T L+ L+    S  +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP--DAIGQLTELKVLSFGTHSETV 361

Query: 191 SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQ 250
           S         +      +  R+          L     L    +  + +         N 
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMF--LDYDQRLNLSDLLQDAINR-------NP 412

Query: 251 LTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHS 310
               I     I L   +   L+     I  +      L+KL++     +    +      
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKA---IQRLTKLQIIYFANSPFTYDN----- 464

Query: 311 TTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLV 370
                  E  +   +  +        N  DL  V+  +     + P++L  + P L +L 
Sbjct: 465 --IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLN 521

Query: 371 LRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
           +  N      Q                      +  +               ++   +  
Sbjct: 522 IACNRGISAAQLKAD---------------WTRLADDED---------TGPKIQIFYMGY 557

Query: 431 NSLHG----QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP 486
           N+L          K   + KL  L    N     +  +     +L  L +  N +   IP
Sbjct: 558 NNLEEFPASASLQK---MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI-EEIP 611

Query: 487 ARLG-NLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQ 544
                    +  +  + N L+  P       +  +  +D S N I     + S       
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD-- 669

Query: 545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE-- 602
                            +   +  T+ LSYN               +  +IL+NN +   
Sbjct: 670 -----------------YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 603 -----GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRR 657
                            L  IDL  N L                                
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKL-------------------------------- 740

Query: 658 TTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR 717
                                 +S  ++   L  +  +D+S N  +   P Q    + ++
Sbjct: 741 --------------------TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLK 779

Query: 718 ALNFSH------NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAH 771
           A    H      N +    P   +    +  L +  N++  K+  +L     L +  +A 
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIAD 836

Query: 772 NNLS 775
           N   
Sbjct: 837 NPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  177 bits (451), Expect = 3e-46
 Identities = 84/677 (12%), Positives = 172/677 (25%), Gaps = 154/677 (22%)

Query: 122 LSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDL 181
           L    ++  L+L        +  ++  L+ L+ LS G +    S  +    +   ++ + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241
                 +H                              +  L     L    +  + +  
Sbjct: 379 RKHRIRMHYK----------------------------KMFLDYDQRLNLSDLLQDAINR 410

Query: 242 TLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301
                  N     I     I L   +   L+     I  +      L+KL++     +  
Sbjct: 411 -------NPEMKPIKKDSRISLKDTQIGNLTNRITFISKA---IQRLTKLQIIYFANSPF 460

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
             +             E  +   +  +        N  DL  V+  +     + P++ L 
Sbjct: 461 TYDN-------IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LY 512

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
           + P L +L +  N      Q                      +  +              
Sbjct: 513 DLPELQSLNIACNRGISAAQLKAD---------------WTRLADDED---------TGP 548

Query: 422 NLEYLVLSENSLHG----QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMS 477
            ++   +  N+L          K   + KL  L    N     +  +     +L  L + 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQK---MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603

Query: 478 DNNLYGNIPARLG-NLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISGSLPS 535
            N +   IP         +  +  + N L+  P       +  +  +D S N I     +
Sbjct: 604 YNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 536 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
            S                        +   +  T+ LSYN               +  +I
Sbjct: 663 ISCSMDD-------------------YKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 596 LANNNLE-------GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS--------LHN 640
           L+NN +                    L  IDL  N L   +      T+        +  
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSY 762

Query: 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT--KEISFSYKGKPLNKMYGVDLS 698
           N                                 F++   +   S + K     +  D  
Sbjct: 763 N--------------------------------CFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 699 CNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL 758
            N++  + P  I    ++  L    N++  V       L     LD++ N         +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISIDVTSV 847

Query: 759 VELNALVVFSVAHNNLS 775
                  ++ + ++   
Sbjct: 848 CPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  177 bits (450), Expect = 3e-46
 Identities = 88/635 (13%), Positives = 187/635 (29%), Gaps = 122/635 (19%)

Query: 31  RLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLN 90
           R      N+  +  NW  ++         GV+ + + GRV  L L+          G++ 
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGA-----KGRVP 340

Query: 91  ASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLS 150
            ++     +L+ L   +++        G E L+     +  +  R  +          L+
Sbjct: 341 DAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 151 SLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNG 210
               L    NR      +K+  D+  +L+D  +   +  I+ +                 
Sbjct: 400 LSDLLQDAINRNPEMKPIKK--DSRISLKDTQIGNLTNRITFI----------------- 440

Query: 211 RVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYL-------NQLTGNISSSPLIHL 263
                     + + RL  LQ ++   +        +          +   N   S   +L
Sbjct: 441 ---------SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-WSNL 490

Query: 264 TSIERLFLSYNQF--QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
             +  + L       Q+P      ++L +L+  +   N      +     T         
Sbjct: 491 KDLTDVELYNCPNMTQLPDF---LYDLPELQSLNIACNRGISAAQLKADWT--------- 538

Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQ 381
                              +++     +NL+    +  L+    L  L   +N +     
Sbjct: 539 --------RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-- 588

Query: 382 TPIQPHWHLDALHVSKNFFQGNIPLEIGVY----------------FPSHLAMG-CFNLE 424
                +  L  L +  N  +  IP +   +                 P+       + + 
Sbjct: 589 EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 425 YLVLSENSLHG---QLFSKKNYLR--KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
            +  S N +      +    +  +    + + L  N       +  +  S +  + +S+N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 480 NL-------YGNIPARLGNLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISG 531
            +                N   L  I +  N L           L YL  +D+S N  S 
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS- 766

Query: 532 SLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIR 590
           S P+   +S+ ++   +                       D   N      P  I     
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQ-------------------RDAEGNRILRQWPTGITTCPS 807

Query: 591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           L  L + +N++  +V  +L    QL ++D+++N  
Sbjct: 808 LIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (256), Expect = 2e-22
 Identities = 32/227 (14%), Positives = 79/227 (34%), Gaps = 21/227 (9%)

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628
             +   + +       ++   R+  L LA    +G VP+ +  L +L+++    ++    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKP 688
                D     +  +                Y    ++ +  +  +    E+    K   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 689 LN-KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV------------------ 729
           ++ K   +    N++T  I   I +LT ++ + F+++  T                    
Sbjct: 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 730 -IPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
              +S+SNL  +  +++ +     ++P  L +L  L   ++A N   
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 6/85 (7%), Positives = 24/85 (28%)

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
           +   +    +    +     +  L+ +     G +P +   L +++ L    ++      
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 756 PQLVELNALVVFSVAHNNLSAAERN 780
               E     +     + +    + 
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKK 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 14/68 (20%), Positives = 26/68 (38%)

Query: 719 LNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE 778
            N   +       V   N  +V  L ++     G++P  + +L  L V S   ++ + + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 779 RNPGPYCL 786
           R  G   L
Sbjct: 364 RLFGDEEL 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  181 bits (461), Expect = 1e-48
 Identities = 91/554 (16%), Positives = 181/554 (32%), Gaps = 52/554 (9%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
               + + L  N +            S  S+L+ L+L R         +  GL  L  L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  N ++       +    T+LE+L    + L       I    +LK+L++ +  +    
Sbjct: 87  LTGNPIQSFSP--GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC- 143

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRG-------TLPCLYLNQLTGNISSSPL-------IH 262
                    L +L  + +  N ++         L       L+ ++S +P+         
Sbjct: 144 -KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 263 LTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFS------GEFNEIYVEPESSHSTTPKFQ 316
              +  L L  N            NL+ L V         +   + +   S         
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
           ++   L+ ++  +      +   ++  +  +  ++K       +  +    +L +    L
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQL 319

Query: 377 SGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLH-- 434
               Q P      L +L ++ N  +G+I  +              +L YL LS N+L   
Sbjct: 320 K---QFPTLDLPFLKSLTLTMN--KGSISFKKV---------ALPSLSYLDLSRNALSFS 365

Query: 435 GQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLS 493
           G           L  L L  N     +  +      L+ L    + L          +L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH--STIQQVHLSKNM 551
            L  + ++  + +      F  L  L  L ++ N+   +  S      + +  + LSK  
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCG 611
           L   + +G F     +  L++S+N+          +L  L  L  + N +E         
Sbjct: 485 LEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 612 LKQLRLIDLSNNNL 625
            K L   +L+NN++
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (379), Expect = 5e-38
 Identities = 95/554 (17%), Positives = 176/554 (31%), Gaps = 63/554 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNN-SIFSSL 146
             +    +    LE L      +A          +  L  LK LN+  N  ++  + +  
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED--LTLDYSSLHISILKSIA-AFTSLK 203
           + L++L  + L YN ++        L          L+LD S   I  ++  A     L 
Sbjct: 150 SNLTNLVHVDLSYNYIQTITV--NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHL 263
            L+++       +   +  L  L  L    +   + +          L      S +  L
Sbjct: 208 ELTLRGNFNSSNI--MKTCLQNLAGLHVHRLILGEFKD------ERNLE-IFEPSIMEGL 258

Query: 264 TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
             +             FS +   F  L+ +   S     I    +        F+ +S+S
Sbjct: 259 CDVTIDEFRLTYTND-FSDDIVKFHCLANVSAMSLAGVSI----KYLEDVPKHFKWQSLS 313

Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS--GP 379
           +    +       L     L+ +  + +     F    L   P+LS L L  N+LS  G 
Sbjct: 314 IIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGC 367

Query: 380 FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---- 435
                     L  L +S N               S   MG   L++L    ++L      
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAII----------MSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSS 494
             F     L KL  L +       +        + L  L M+ N+   N  +    N ++
Sbjct: 418 SAFLS---LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST-IQQVHLSKNMLY 553
           L  + ++   L+      F  L+ L++L++S NN+     S  +    +  +  S N + 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCG-- 611
              K        S+   +L+ NS +      I    +    +         V    C   
Sbjct: 535 T-SKGILQHFPKSLAFFNLTNNSVAC-----ICEHQKFLQWVKEQKQFLVNVEQMTCATP 588

Query: 612 --LKQLRLIDLSNN 623
             +    ++D +N+
Sbjct: 589 VEMNTSLVLDFNNS 602

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (377), Expect = 1e-37
 Identities = 90/554 (16%), Positives = 174/554 (31%), Gaps = 80/554 (14%)

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYV 303
           L  N L   + S    + + ++ L LS  + +   ++E   +  L  L       N I  
Sbjct: 39  LSFNPLKI-LKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQS 94

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
               S S      LE++    + + +     +     L+ ++ + + +          N 
Sbjct: 95  FSPGSFSGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 364 PNLSTLVLRNNSLSG----PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
            NL  + L  N +        Q   +      +L +S N     I  +            
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF---------Q 202

Query: 420 CFNLEYLVLSENSLHGQLFSK-KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGL---- 474
              L  L L  N     +       L  L    L    F  E    +   S +EGL    
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 475 ----YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
                ++  N + +   +   L++++ + +A   ++    +        + L +    + 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH--FKWQSLSIIRCQLK 320

Query: 531 GSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN--SFSGNIPYWIERL 588
              P+      ++ + L+ N               S+  LDLS N  SFSG   Y     
Sbjct: 321 -QFPT-LDLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 589 IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP-GCLDN----TSLHNNGD 643
             LR+L L+ N     +     GL++L+ +D  ++ L          +      L  +  
Sbjct: 376 NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 644 NVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT 703
           N                F+G + L                           + ++ N   
Sbjct: 435 NTKIDFDGI--------FLGLTSLNT-------------------------LKMAGNSFK 461

Query: 704 GEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN 762
                 +    TN+  L+ S   L  +    F  L++++ L++SHNNL         +L 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 763 ALVVFSVAHNNLSA 776
           +L     + N +  
Sbjct: 522 SLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (357), Expect = 3e-35
 Identities = 74/463 (15%), Positives = 140/463 (30%), Gaps = 48/463 (10%)

Query: 344 VDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN 403
               D  L  + P+ +     +   + L  N L             L  L +S+   +  
Sbjct: 16  YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---QLFSKKNYLRKLARLHLDANYFTGE 460
                          G  +L  L+L+ N +       FS    L  L  L          
Sbjct: 72  EDKAWH---------GLHHLSNLILTGNPIQSFSPGSFSG---LTSLENLVAVETKLASL 119

Query: 461 IPKSLSNCSRLEGLYMSDNNLYG-NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQL--- 516
               +     L+ L ++ N ++   +PA   NL++L  + ++ N++Q     +   L   
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 517 -NYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
                 LD+S N I            + ++ L  N     +      N + +    L   
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 576 SFSGNI------PYWIERLIRLRYLIL--ANNNLEGEVPNQLCGLKQLRLIDLSNNNL-- 625
            F          P  +E L  +          N   +   +   L  +  + L+  ++  
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 626 FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT--------- 676
              +P      SL      +        P  ++            + +            
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359

Query: 677 ---TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVS 733
              +     SY     N +  +DLS N     +      L  ++ L+F H+ L  V   S
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 734 -FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            F +L ++  LD+S+ N         + L +L    +A N+  
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  129 bits (327), Expect = 2e-31
 Identities = 73/467 (15%), Positives = 132/467 (28%), Gaps = 44/467 (9%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
             + +D S + LK    ++   N   L  L L    +            HL  L ++ N 
Sbjct: 33  STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 400 FQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG 459
            Q   P             G  +LE LV  E  L          L  L +L++  N+   
Sbjct: 92  IQSFSPGSFS---------GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 460 -EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM----MASNHLQGPIPLEFC 514
            ++P   SN + L  + +S N +       L  L     +     M+ N +   I  +  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAF 201

Query: 515 QLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNMLYGPLKYGTFFN-------RS 565
           Q   L  L L  N  S ++      + + +    L             F           
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 566 SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           +I    L+Y +   +       L  +  + LA  +++      +    + + + +    L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 626 FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY---------FVGPSILEKEESIMFT 676
                  L          N GS +         +Y         F G        +    
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 677 T------KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ-IGKLTNIRALNFSHNNLTGV 729
                    I  S     L ++  +D   + L           L  +  L+ S+ N    
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 730 IPVSFSNLNQVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLS 775
               F  L  + +L ++ N+               L    ++   L 
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 5e-16
 Identities = 55/304 (18%), Positives = 99/304 (32%), Gaps = 53/304 (17%)

Query: 76  SSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGR 135
             K Q L     QL          L++L L  N  +         +   L  L  L+L R
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS------ISFKKVALPSLSYLDLSR 359

Query: 136 NLFNNSIFSSLA--GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISIL 193
           N  + S   S +  G +SLR L L +N     I +         L+   LD+    +  +
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQ--HLDFQHSTLKRV 414

Query: 194 KSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTG 253
              +AF SL+                         L  L +   + +             
Sbjct: 415 TEFSAFLSLE------------------------KLLYLDISYTNTK------------- 437

Query: 254 NISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
                  + LTS+  L ++ N F+       F N + L        ++         T  
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 314 KFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN 373
             +L+ +++S +++           + L  +D S + ++      L     +L+   L N
Sbjct: 498 --RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTN 554

Query: 374 NSLS 377
           NS++
Sbjct: 555 NSVA 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (400), Expect = 5e-40
 Identities = 106/579 (18%), Positives = 199/579 (34%), Gaps = 81/579 (13%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            + AS     +QL+ L L S      ++         L  L++L+LG +        +  
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAF---RNLPNLRILDLGSSKIYFLHPDAFQ 94

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSL-HISILKSIAAFTSLKRLS 206
           GL  L  L L +  L  ++       N   L  L L  + +  + +  S     SLK + 
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 207 IQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSI 266
             + ++      + E L +   L    +  N L   +   +   +              +
Sbjct: 155 FSSNQIFLVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMN-------PFRNMVL 206

Query: 267 ERLFLSYNQFQIP-----------FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKF 315
           E L +S N + +                       +      F+ I    +++ +   + 
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
            +  + LS   + +   +      DL++++ + + +  +  +       NL  L L  N 
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNL 325

Query: 376 LSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---S 432
           L                  +  + F G                    + Y+ L +N    
Sbjct: 326 LG----------------ELYSSNFYGL-----------------PKVAYIDLQKNHIAI 352

Query: 433 LHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNL 492
           +  Q F     L KL  L L  N  T     ++     +  +++S N L   +P      
Sbjct: 353 IQDQTFKF---LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-VTLPK---IN 400

Query: 493 SSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISGSLPS--CSSHSTIQQVHLSK 549
            + N I ++ N L+   I     ++ +L+IL L++N  S        S + +++Q+ L +
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 550 NML----YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605
           NML       L +  F   S +  L L++N  +   P     L  LR L L +N L    
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 644
            N L     L ++D+S N L    P    + S+ +   N
Sbjct: 521 HNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (382), Expect = 9e-38
 Identities = 100/558 (17%), Positives = 184/558 (32%), Gaps = 63/558 (11%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSI-FSSLAGLSSLRTLSLG 158
            E L L  N I     +        L +L+LL LG      +I   +   L +LR L LG
Sbjct: 26  TERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 159 YNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISIL--KSIAAFTSLKRLSIQNGRVDGAL 216
            +++   +   +      +L +L L +  L  ++L         +L RL +   ++    
Sbjct: 82  SSKIY-FLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL- 138

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
                   +L  L+ +    N +   +    L  L             ++    L+ N  
Sbjct: 139 -YLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPL----------QGKTLSFFSLAANSL 186

Query: 277 QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336
               S++    ++  +    E  ++      S +    + ++      + I  +    L 
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDV------SGN---GWTVDITGNFSNAISKSQAFSLI 237

Query: 337 NQHDLELVDFSDSNLKGEFPNWLLKN--NPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH 394
             H +    F   N+K +            ++  L L +  +        +    L  L+
Sbjct: 238 LAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA 454
           ++ N                    G  NL+ L LS N L     S    L K+A + L  
Sbjct: 297 LAYNKINK---------IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 455 NYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFC 514
           N+      ++     +L+ L + DN L       +  + S+ DI ++ N L     +   
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 515 QLNYLEILDLSENNISG--SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572
                 ++ LSEN +     L        +Q + L++N         T     S+  L L
Sbjct: 403 ----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 573 SYNSFSGNIPYWIER-----LIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL-- 625
             N         +       L  L+ L L +N L    P     L  LR + L++N L  
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 626 --FGQIPGCLDNTSLHNN 641
                +P  L+   +  N
Sbjct: 519 LSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (366), Expect = 9e-36
 Identities = 125/663 (18%), Positives = 203/663 (30%), Gaps = 156/663 (23%)

Query: 123 SGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
             L+  + L L  N       SS   L  L+ L LG      +ID KE   N  NL  L 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILD 79

Query: 183 LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT 242
           L  S +             L                  +    L HL EL +    L   
Sbjct: 80  LGSSKI-----------YFL----------------HPDAFQGLFHLFELRLYFCGLSDA 112

Query: 243 LPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIY 302
           +           +      +L ++ RL LS NQ +  +    F  L+ LK      N+I+
Sbjct: 113 V-----------LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 303 VEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD------LELVDFSDSNLKGEFP 356
           +  E          L   SL+ + +++          +      LE++D S +    +  
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 357 NWL-----------LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIP 405
                         L    ++       +++                    +N F G   
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK----------------DPDQNTFAGLAR 265

Query: 406 LEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIP 462
                           ++ +L LS     SL+ ++F     L+ L  L+L  N       
Sbjct: 266 S---------------SVRHLDLSHGFVFSLNSRVFET---LKDLKVLNLAYNKINKIAD 307

Query: 463 KSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEIL 522
           ++      L+ L +S N L     +    L  +  I +  NH+       F  L  L+ L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 523 DLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG-NI 581
           DL +N ++    +     +I  + LS N L   L             + LS N     +I
Sbjct: 368 DLRDNALT----TIHFIPSIPDIFLSGNKLVT-LPKINLTAN----LIHLSENRLENLDI 418

Query: 582 PYWIERLIRLRYLILANNNLEGEVPNQLC-GLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640
            Y++ R+  L+ LIL  N       +Q       L  + L  N L       L       
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN 700
                                                           L+ +  + L+ N
Sbjct: 479 ------------------------------------------------LSHLQVLYLNHN 490

Query: 701 KLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV 759
            L   +PP +   LT +R L+ + N LT +          +E LD+S N L    P   V
Sbjct: 491 YLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFV 547

Query: 760 ELN 762
            L+
Sbjct: 548 SLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 1e-33
 Identities = 87/542 (16%), Positives = 178/542 (32%), Gaps = 67/542 (12%)

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEP 305
           L  N +   +++S    L  ++ L L      +    E F NL  L++     ++IY   
Sbjct: 31  LSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89

Query: 306 ESSHSTTPKFQLESVSLSGSDIHATF--PKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
             +        L  + L    +        +  N   L  +D S + ++  + +      
Sbjct: 90  PDAFQGLFH--LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 364 PNLSTLVLRNNSLSGPFQTPIQP--HWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
            +L ++   +N +    +  ++P     L    ++ N     + ++ G        M   
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM--- 204

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
            LE L +S N     +                +N  +     SL     + G     +N+
Sbjct: 205 VLEILDVSGNGWTVDI------------TGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 482 YGNIPARLGNL--SSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
                     L  SS+  + ++   +       F  L  L++L+L+ N I+         
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-------- 304

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
                           +    F+   ++  L+LSYN            L ++ Y+ L  N
Sbjct: 305 ----------------IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659
           ++          L++L+ +DL +N L   I        +  +G+ + +  P  N      
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTL-PKINLTANLI 406

Query: 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRA 718
           +     +           + +   Y    +  +  + L+ N+ +     Q   +  ++  
Sbjct: 407 HLSENRL-----------ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 719 LNFSHNNLTGVIPVS-----FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN 773
           L    N L            F  L+ ++ L ++HN LN   P     L AL   S+  N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 774 LS 775
           L+
Sbjct: 516 LT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 6e-31
 Identities = 95/520 (18%), Positives = 184/520 (35%), Gaps = 74/520 (14%)

Query: 85  TAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS 144
           +   L        + L  L L  N I     +        L+ LK ++   N        
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFSSNQIFLVCEH 166

Query: 145 SLAGLS--SLRTLSLGYNRLKG--SIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFT 200
            L  L   +L   SL  N L    S+D  + ++ F N+    LD S    ++  +     
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 201 SLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG------------TLPCLYL 248
           ++ +    +             L    H+     G ++++             ++  L L
Sbjct: 227 AISKSQAFS-------------LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 249 --NQLTGNISSSPLIHLTSIERLFLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYVEP 305
               +  +++S     L  ++ L L+YN+  +I      F+ L  L+V +  +N +    
Sbjct: 274 SHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYNLLGELY 330

Query: 306 ESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPN 365
            S+    PK  +  + L  + I     +       L+ +D  D+ L        +   P+
Sbjct: 331 SSNFYGLPK--VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPS 382

Query: 366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEY 425
           +  + L  N L    +  +      + +H+S+N  +    L    YF   +     +L+ 
Sbjct: 383 IPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDIL----YFLLRVP----HLQI 430

Query: 426 LVLSENSLHG----QLFSKKNYLRKLARLHLDANYFTGEIPKSL-----SNCSRLEGLYM 476
           L+L++N        Q  S+      L +L L  N         L        S L+ LY+
Sbjct: 431 LILNQNRFSSCSGDQTPSE---NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC 536
           + N L    P    +L++L  + + SN L      +      LEILD+S N +    P+ 
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLA--PNP 543

Query: 537 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 576
               ++  + ++ N      +  TF N  +   + ++   
Sbjct: 544 DVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 7e-24
 Identities = 62/366 (16%), Positives = 126/366 (34%), Gaps = 51/366 (13%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
             E L+LS N               +  +             S     +L+ L +     
Sbjct: 25  TTERLLLSFN--------------YIRTVT----------ASSFPFLEQLQLLELGSQYT 60

Query: 482 YGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS---CS 537
              I      NL +L  + + S+ +    P  F  L +L  L L    +S ++       
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 538 SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL--IRLRYLI 595
           +   + ++ LSKN +     + +F   +S+ ++D S N       + +E L    L +  
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 596 LANNNLEGEVPNQLCGLKQ------LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSA 649
           LA N+L   V               L ++D+S N     I G     +  N      + +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-----NFSNAISKSQAFS 235

Query: 650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ 709
                +     F   +I + +++        S  +          +DLS   +       
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH----------LDLSHGFVFSLNSRV 285

Query: 710 IGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV 769
              L +++ LN ++N +  +   +F  L+ ++ L++S+N L          L  +    +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 770 AHNNLS 775
             N+++
Sbjct: 346 QKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 26/219 (11%)

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628
                + + +  +P   + L     L+L+ N +     +    L+QL+L++L +      
Sbjct: 8   IAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 629 IPG--CLDNTSL------HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEI 680
           I      +  +L       +    +   A     +          + +         K+ 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD------AVLKDG 117

Query: 681 SFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQ 739
            F    + L  +  +DLS N++    + P  GKL ++++++FS N +  V       L  
Sbjct: 118 YF----RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 740 --VESLDVSHNNLNGKIPPQLVE-LNALVVFSVAHNNLS 775
             +    ++ N+L  ++     + +N      +   ++S
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (374), Expect = 1e-37
 Identities = 92/546 (16%), Positives = 180/546 (32%), Gaps = 65/546 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            L +     F +L+ L L    I    +         LS L  L L  N   +    + +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSL-HISILKSIAAFTSLKRLS 206
           GLSSL+ L      L    +    + +   L++L + ++ +    + +  +  T+L+ L 
Sbjct: 98  GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 207 IQNGRVDGALGDDEEGLCRLGHLQ-ELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTS 265
           + + ++      D   L ++  L   L +  N +               I       +  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-------------IQPGAFKEI-R 201

Query: 266 IERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGS 325
           + +L L  N   +         L+ L+V      E                      +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF--------------------RNEG 241

Query: 326 DIHATFPKFLYNQHDLELVDFSDSNLKGEFPNW--LLKNNPNLSTLVLRNNSLSGPFQTP 383
           ++       L    +L + +F  + L     +   L     N+S+  L + ++       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KD 299

Query: 384 IQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNY 443
              ++    L +    F     L++             +L+ L  + N      FS+ + 
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLK------------SLKRLTFTSNKGGN-AFSEVD- 345

Query: 444 LRKLARLHLDANYFT--GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501
           L  L  L L  N  +  G   +S    + L+ L +S N +   + +    L  L  +   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 502 SNHLQGPIPLE-FCQLNYLEILDLSENNISGSLPSCSSH-STIQQVHLSKNMLYGPLKYG 559
            ++L+       F  L  L  LD+S  +   +     +  S+++ + ++ N         
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 560 TFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID 619
            F    ++  LDLS        P     L  L+ L +A+N L+         L  L+ I 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 620 LSNNNL 625
           L  N  
Sbjct: 525 LHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (345), Expect = 7e-34
 Identities = 91/543 (16%), Positives = 162/543 (29%), Gaps = 101/543 (18%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
               + L L  N +                +L++L+L R         +   LS L TL 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  N ++            ++L+ L    ++L       I    +LK L++ +       
Sbjct: 83  LTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH------- 133

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
                                           N +          +LT++E L LS N+ 
Sbjct: 134 --------------------------------NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 277 QIPFSLEPFFNLSKLKVFSGE----FNEI-YVEPESSHSTTPKFQLESVSLSGSDIHATF 331
           Q          L ++ + +       N + +++P +        +L  ++L  +      
Sbjct: 162 QS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE----IRLHKLTLRNNFDSLNV 216

Query: 332 PKFLYNQ------HDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ 385
            K           H L L +F +     +F    L+   NL+    R   L       I 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 386 PHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR 445
               L  +            ++   Y         F  ++L L           K   L+
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYN--------FGWQHLELVNCKFGQFPTLK---LK 325

Query: 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY--GNIPARLGNLSSLNDIMMASN 503
            L RL   +N        S  +   LE L +S N L   G         +SL  + ++ N
Sbjct: 326 SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 563
            +   +   F  L  LE LD   +N+   +                        +  F +
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSE----------------------FSVFLS 419

Query: 564 RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDLSN 622
             +++ LD+S+             L  L  L +A N+ +          L+ L  +DLS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 623 NNL 625
             L
Sbjct: 480 CQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (312), Expect = 1e-29
 Identities = 109/614 (17%), Positives = 190/614 (30%), Gaps = 122/614 (19%)

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209
            S + L L +N L+       +  +F  L+ L L    +      +  + + L  L +  
Sbjct: 28  FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERL 269
             +             L  LQ+L     +L              ++ + P+ HL +++ L
Sbjct: 86  NPIQSL---ALGAFSGLSSLQKLVAVETNLA-------------SLENFPIGHLKTLKEL 129

Query: 270 FLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHA 329
            +++N  Q     E F NL+ L+      N+I     +      +  L ++SL       
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL------- 182

Query: 330 TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGP-FQTPIQPHW 388
                          D S + +         K    L  L LRNN  S    +T IQ   
Sbjct: 183 ---------------DLSLNPMN-FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLA 448
            L+   +    F+    LE    F      G  NL         L   L    +    L 
Sbjct: 226 GLEVHRLVLGEFRNEGNLE---KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 449 RLH---LDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL 505
            +    L +      +    S     + L + +         +L +L  L      SN  
Sbjct: 283 NVSSFSLVSVTIE-RVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKG 337

Query: 506 QGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS 565
                     L  LE LDLS N +S                             + F  +
Sbjct: 338 GNAFS--EVDLPSLEFLDLSRNGLSFK----------------------GCCSQSDFGTT 373

Query: 566 SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG-EVPNQLCGLKQLRLIDLSNNN 624
           S+  LDLS+N     +      L +L +L   ++NL+     +    L+ L  +D+S+ +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 625 LFGQIPGCLDNTS------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678
                 G  +  S      +  N                              S      
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGN------------------------------SFQENFL 462

Query: 679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNL 737
              F+     L  +  +DLS  +L  ++ P     L++++ LN + N L  V    F  L
Sbjct: 463 PDIFT----ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 738 NQVESLDVSHNNLN 751
             ++ + +  N  +
Sbjct: 518 TSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 1e-27
 Identities = 92/549 (16%), Positives = 172/549 (31%), Gaps = 71/549 (12%)

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYV 303
           L  N L  ++ S        ++ L LS  + Q   ++E   + +LS L       N I  
Sbjct: 35  LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
               + S      L+ +    +++ +     + +   L+ ++ + + ++         N 
Sbjct: 91  LALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 364 PNLSTLVLRNNSLS----GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
            NL  L L +N +        +   Q      +L +S N                 +  G
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-------------FIQPG 195

Query: 420 CF---NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYM 476
            F    L  L L  N     +   K  ++ LA L +                    G + 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVM--KTCIQGLAGLEVHRLVL---------------GEFR 238

Query: 477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQG---PIPLEFCQLNYLEILDLSENNISGSL 533
           ++ NL     + L  L +L        +L      I   F  L  +    L    I   +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RV 297

Query: 534 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRY 593
              S +   Q + L                  S+  L  + N            L  L +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQF----PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEF 351

Query: 594 LILANNNLE--GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLH--NNGDNVGSSA 649
           L L+ N L   G       G   L+ +DLS N +       L    L   +   +     
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKG--KPLNKMYGVDLSCNKLTGEIP 707
             F+       F+    L     +  +      ++ G    L+ +  + ++ N       
Sbjct: 412 SEFSV------FLSLRNLI---YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 708 PQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVV 766
           P I  +L N+  L+ S   L  + P +F++L+ ++ L+++ N L          L +L  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 767 FSVAHNNLS 775
             +  N   
Sbjct: 523 IWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 4e-26
 Identities = 76/470 (16%), Positives = 149/470 (31%), Gaps = 49/470 (10%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
             + +D S + L+    ++   + P L  L L    +        Q   HL  L ++ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 400 FQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT- 458
            Q                 G  +L+ LV  E +L         +L+ L  L++  N    
Sbjct: 88  IQ---------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 459 GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM----MASNHLQGPIPLEFC 514
            ++P+  SN + LE L +S N +       L  L  +  +     ++ N +   I     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197

Query: 515 QLNYLEILDLSENNISGSLPSCS----SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 570
           +   L  L L  N  S ++        +   + ++ L +    G L+         +  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 571 DLSYNSFSGN------IPYWIERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDLSNN 623
            +     +        I      L  +    L +  +E         G + L L++    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 624 NLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY-------FVGPSILEKEESIMFT 676
                    L   +  +N    G +A +        +               + +    +
Sbjct: 318 QFPTLKLKSLKRLTFTSN---KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 677 TKEISFSYKG--------KPLNKMYGVDLSCNKLTGEIPPQI--GKLTNIRALNFSHNNL 726
            K +  S+ G          L ++  +D   + L  ++        L N+  L+ SH + 
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 433

Query: 727 TGVIPVSFSNLNQVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLS 775
                  F+ L+ +E L ++ N+      P    EL  L    ++   L 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 7e-22
 Identities = 87/450 (19%), Positives = 138/450 (30%), Gaps = 76/450 (16%)

Query: 99  QLETLHLDSNNIAGFVENGGLERLSGLSKLKL-LNLGRNLFNNSIFSSLAGLSSLRTLSL 157
            LE L L SN I   +    L  L  +  L L L+L  N  N     +   +  L  L+L
Sbjct: 150 NLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTL 207

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS---ILKSIAAFTSLKRLSIQNGR--- 211
             N    ++  K  +     LE   L                +A   L  L+I+  R   
Sbjct: 208 RNNFDSLNVM-KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 212 VDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTG------NISSSPLIHLTS 265
           +D  L D  +    L ++    +    +       Y                 P + L S
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 266 IERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGS 325
           ++RL  + N+     +     +L  L+      N +  +   S S      L+ + LS +
Sbjct: 327 LKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 326 DIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ 385
            +  T          LE +DF  SNLK      +  +  NL  L + +            
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------- 435

Query: 386 PHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR 445
                                       + +  G  +LE L ++ NS             
Sbjct: 436 --------------------------AFNGIFNGLSSLEVLKMAGNSFQENF-------- 461

Query: 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL 505
                          +P   +    L  L +S   L    P    +LSSL  + MASN L
Sbjct: 462 ---------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 506 QGPIPLEFCQLNYLEILDLSENNISGSLPS 535
           +      F +L  L+ + L  N    S P 
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 9e-15
 Identities = 57/368 (15%), Positives = 119/368 (32%), Gaps = 39/368 (10%)

Query: 69  RVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKL 128
           R+  L L +    L      +         +L      +       +   LE L  L+  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 129 KLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT-LDYSS 187
           +      + + + I      L+++ + SL    ++        + +F+       L+  +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-------RVKDFSYNFGWQHLELVN 313

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
                  ++    SLKRL+  + +   A  + +     L  L+ L +  N L        
Sbjct: 314 CKFGQFPTL-KLKSLKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSRNGLS------- 360

Query: 248 LNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPE 306
                    S      TS++ L LS+N    +  +   F  L +L+    + + +    E
Sbjct: 361 ----FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSE 413

Query: 307 SSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNL 366
            S   + +  L  + +S +     F         LE++  + ++ +  F   +     NL
Sbjct: 414 FSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYL 426
           + L L    L     T       L  L+++ N  +           P  +     +L+ +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK---------SVPDGIFDRLTSLQKI 523

Query: 427 VLSENSLH 434
            L  N   
Sbjct: 524 WLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
                     +IP  +    + + L+ S N L  +   SF +  +++ LD+S   +    
Sbjct: 12  YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 755 PPQLVELNALVVFSVAHNNLS 775
                 L+ L    +  N + 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQ 89

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 1e-34
 Identities = 93/495 (18%), Positives = 181/495 (36%), Gaps = 59/495 (11%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
            T   +     L   N+            + L ++  L   R    +     +  L++L 
Sbjct: 20  DTALAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLT 71

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            ++   N+L         L N T L D+ ++ +   I+ +  +A  T+L  L++ N ++ 
Sbjct: 72  QINFSNNQLTDITP----LKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQI- 124

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLR-----GTLPCLYLNQLTGNISS-SPLIHLTSIE 267
                D + L  L +L  L +  N +        L  L        ++   PL +LT++E
Sbjct: 125 ----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180

Query: 268 RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327
           RL +S N+      +     L+ L+      N+I         T     L+ +SL+G+ +
Sbjct: 181 RLDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGILT----NLDELSLNGNQL 233

Query: 328 HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH 387
                  L +  +L  +D +++ +    P   L     L+ L L  N +S    +P+   
Sbjct: 234 --KDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNI--SPLAGL 286

Query: 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKL 447
             L  L +++N  +   P+               NL YL L  N++     S  + L KL
Sbjct: 287 TALTNLELNENQLEDISPIS-----------NLKNLTYLTLYFNNISD--ISPVSSLTKL 333

Query: 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG 507
            RL    N  +     SL+N + +  L    N +    P  L NL+ +  + +       
Sbjct: 334 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 508 PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSI 567
             P+ +     +     +      +  + S   +  +  ++ N+     +    F+    
Sbjct: 390 -APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFS--QP 446

Query: 568 VTLDLSYNSFSGNIP 582
           VT+     +FSG + 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (337), Expect = 2e-33
 Identities = 95/498 (19%), Positives = 167/498 (33%), Gaps = 89/498 (17%)

Query: 128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSS 187
           L    + ++   N IF+    L+      LG   +  ++    +  +   +  L      
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTV----SQTDLDQVTTLQA--DR 55

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
           L I  +  +    +L +++  N ++      D   L  L  L ++ M  N +        
Sbjct: 56  LGIKSIDGVEYLNNLTQINFSNNQLT-----DITPLKNLTKLVDILMNNNQIA------- 103

Query: 248 LNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPES 307
                     +PL +LT++  L L  NQ      ++P  NL+ L       N I      
Sbjct: 104 --------DITPLANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTI------ 146

Query: 308 SHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLS 367
                                 +    L     L+ + F +  +    P   L N   L 
Sbjct: 147 ----------------------SDISALSGLTSLQQLSFGN-QVTDLKP---LANLTTLE 180

Query: 368 TLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLV 427
            L + +N +S    + +    +L++L  + N      PL               NL+ L 
Sbjct: 181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG-----------ILTNLDELS 227

Query: 428 LSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA 487
           L+ N L          L  L  L L  N  +   P  LS  ++L  L +  N +    P 
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282

Query: 488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL 547
            L  L++L ++ +  N L+   P+    L  L  L L  NNIS  +   SS + +Q++  
Sbjct: 283 -LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFF 338

Query: 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN 607
             N +       +  N ++I  L   +N  S   P  +  L R+  L L +        N
Sbjct: 339 YNNKVSDV---SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

Query: 608 QLCGLKQLRLIDLSNNNL 625
               +     +      L
Sbjct: 394 YKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (296), Expect = 4e-28
 Identities = 91/513 (17%), Positives = 170/513 (33%), Gaps = 77/513 (15%)

Query: 241 GTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNE 300
           G L    + Q T          L    +  L               +L ++     +   
Sbjct: 1   GPLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVT---DTVSQTDLDQVTTLQADRLG 57

Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLL 360
           I       +       L  ++ S + +  T    L N   L  +  +++ +    P   L
Sbjct: 58  IKSIDGVEYLN----NLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIADITP---L 108

Query: 361 KNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGC 420
            N  NL+ L L NN ++     P++   +L+ L +S N       L            G 
Sbjct: 109 ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALS-----------GL 155

Query: 421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN 480
            +L+ L         +  +    L  L RL + +N  +      L+  + LE L  ++N 
Sbjct: 156 TSLQQLSFGNQVTDLKPLAN---LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQ 210

Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHS 540
           +    P  LG L++L+++ +  N L+    L    L  L  LDL+ N IS +L   S  +
Sbjct: 211 ISDITP--LGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQIS-NLAPLSGLT 265

Query: 541 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNN 600
            + ++ L  N +            +++  L+L+ N      P  I  L  L YL L  NN
Sbjct: 266 KLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 601 LEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660
           +    P  +  L +L+ +   NN +   +    + T++                      
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNI---------------------- 355

Query: 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720
                       +     +IS       L ++  + L+    T   P       +I    
Sbjct: 356 ----------NWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTV 404

Query: 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            +      + P + S+       D++ N  +  
Sbjct: 405 KNVTGAL-IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (282), Expect = 3e-26
 Identities = 85/405 (20%), Positives = 146/405 (36%), Gaps = 67/405 (16%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
           ++   NL+ +   NN L+    TP++    L  + ++ N      PL             
Sbjct: 64  VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLA-----------N 110

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
             NL  L L  N +          L  L RL L +N  +     +LS  + L+ L    N
Sbjct: 111 LTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-N 165

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +    P  L NL++L  + ++SN +     L   +L  LE L  + N IS  +      
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQIS-DITPLGIL 220

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
           + + ++ L+ N L      GT  + +++  LDL+ N  S   P  +  L +L  L L  N
Sbjct: 221 TNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659
            +    P  L GL  L  ++L+ N L   I    +  +L                     
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLED-ISPISNLKNL--------------------- 311

Query: 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRAL 719
                        +      IS       L K+  +    NK++      +  LTNI  L
Sbjct: 312 -----------TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWL 358

Query: 720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNAL 764
           +  HN ++ + P   +NL ++  L ++              ++  
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (276), Expect = 2e-25
 Identities = 80/416 (19%), Positives = 146/416 (35%), Gaps = 69/416 (16%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
                     VL   +++            +  L   +   +    +E            
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVE-----------Y 66

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
             NL  +  S N L     +    L KL  + ++ N      P  L+N + L GL + +N
Sbjct: 67  LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +    P  L NL++LN + ++SN +     L    L  L+ L    N ++   P  ++ 
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFG-NQVTDLKPL-ANL 176

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
           +T++++ +S N +            +++ +L  + N  S   P  +  L  L  L L  N
Sbjct: 177 TTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659
            L+      L  L  L  +DL+NN +   +      T L                     
Sbjct: 232 QLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKL--------------------- 267

Query: 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRAL 719
                        +     +IS       L  +  ++L+ N+L    P  I  L N+  L
Sbjct: 268 -----------TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
               NN++ + P   S+L +++ L   +N ++      L  L  +   S  HN +S
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 1e-20
 Identities = 60/355 (16%), Positives = 126/355 (35%), Gaps = 66/355 (18%)

Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
            +  +  +  Q+F+    L +  +  L     T  +    ++  ++  L      +    
Sbjct: 7   TITQDTPI-NQIFTDTA-LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KS 60

Query: 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQV 545
              +  L++L  I  ++N L    PL+   L  L  + ++ N I+  +   ++ + +  +
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIA-DITPLANLTNLTGL 117

Query: 546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605
            L  N +          N +++  L+LS N+ S      +  L  L+ L    N +    
Sbjct: 118 TLFNNQITDID---PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLK 171

Query: 606 PNQLCGLKQLRLIDLSNNNL-----FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660
           P  L  L  L  +D+S+N +       ++   L++    NN                   
Sbjct: 172 P--LANLTTLERLDISSNKVSDISVLAKLTN-LESLIATNNQ------------------ 210

Query: 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720
                 +     +               L  +  + L+ N+L       +  LTN+  L+
Sbjct: 211 ------ISDITPL-------------GILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 249

Query: 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            ++N ++ + P   S L ++  L +  N ++   P  L  L AL    +  N L 
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 57/308 (18%), Positives = 108/308 (35%), Gaps = 55/308 (17%)

Query: 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNI 529
            L    ++ +     I      L+     ++   ++   +      L+ +  L      I
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI 58

Query: 530 SGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLI 589
             S+      + + Q++ S N L          N + +V + ++ N  +   P  +  L 
Sbjct: 59  K-SIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 590 RLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLH--NNGDNVGS 647
            L  L L NN +    P  L  L  L  ++LS+N +   I      TSL   + G+ V  
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQV-- 167

Query: 648 SAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 707
                                        T     +     L  +  +D+S NK++    
Sbjct: 168 -----------------------------TDLKPLAN----LTTLERLDISSNKVSD--I 192

Query: 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVF 767
             + KLTN+ +L  ++N ++ + P     L  ++ L ++ N L       L  L  L   
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 248

Query: 768 SVAHNNLS 775
            +A+N +S
Sbjct: 249 DLANNQIS 256

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 8e-32
 Identities = 91/549 (16%), Positives = 167/549 (30%), Gaps = 84/549 (15%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
              +++L L  N I           L   + L++L L  +  N     +   L SL  L 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLH-ISILKSIAAFTSLKRLSIQNGRVDGA 215
           L  N L  S+         ++L+ L L  +    + +       T+L+ L I N      
Sbjct: 81  LSDNHLS-SLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQ 275
           +         L  L EL +    LR             N  S  L  +  I  L L  ++
Sbjct: 139 I--RRIDFAGLTSLNELEIKALSLR-------------NYQSQSLKSIRDIHHLTLHLSE 183

Query: 276 FQ--IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS--GSDIHATF 331
               +    +   ++  L++           P      +   +  +   S    +     
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 332 PKFLYNQHDLELVDFSDSNLKG-----EFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQP 386
            K L    +L  V+F D  L G        + ++     + T+ +R   +   +      
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 387 HW-----HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLF 438
                   +  + V  +              P   +    +LE+L LSEN     + +  
Sbjct: 304 TVYSLLEKVKRITVENSKVF---------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 439 SKKNYLRKLARLHLDANYFT--GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLN 496
           + K     L  L L  N+     +  + L     L  L +S N     +P        + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMR 413

Query: 497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPL 556
            + ++S  ++    ++ C    LE+LD+S NN+                  S  +     
Sbjct: 414 FLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD---------------SFSLFL----- 450

Query: 557 KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLR 616
                     +  L +S N         +     L  + ++ N L+         L  L+
Sbjct: 451 --------PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 617 LIDLSNNNL 625
            I L  N  
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 1e-29
 Identities = 89/585 (15%), Positives = 182/585 (31%), Gaps = 103/585 (17%)

Query: 173 DNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQEL 232
                ++ L L ++ +       + A  +L+ L +++ R++     + +    LG L+ L
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI---EGDAFYSLGSLEHL 79

Query: 233 HMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLK 292
            +  N L              ++SSS    L+S++ L L  N +Q       F NL+ L+
Sbjct: 80  DLSDNHLS-------------SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 293 VFS-GEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNL 351
               G             +      L  + +    +     + L +  D+  +    S  
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 352 KGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVY 411
                        ++  L LR+ +L+    +P+        +   K  F+G++  +    
Sbjct: 185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK--KLAFRGSVLTDESFN 241

Query: 412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRL 471
               L      L  +   + +L+G      +    ++ L                    +
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-------------GKVETVTI 288

Query: 472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG 531
             L++    L+ ++      L  +  I + ++ +          L  LE LDLSEN +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV- 347

Query: 532 SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS--GNIPYWIERLI 589
                +S                           S+ TL LS N           +  L 
Sbjct: 348 EEYLKNSAC--------------------KGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 590 RLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL---FGQIPGCLDNTSLHNNGDNVG 646
            L  L ++ N     +P+     +++R ++LS+  +      IP  L+   + NN     
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN----- 441

Query: 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 706
                                             +       L ++  + +S NKL   +
Sbjct: 442 ----------------------------------NLDSFSLFLPRLQELYISRNKLK-TL 466

Query: 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
           P        +  +  S N L  V    F  L  ++ + +  N  +
Sbjct: 467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (308), Expect = 2e-29
 Identities = 97/543 (17%), Positives = 168/543 (30%), Gaps = 102/543 (18%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            +    L     L+ L L S+ I     +        L  L+ L+L  N  ++   S   
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHLDLSDNHLSSLSSSWFG 95

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            LSSL+ L+L  N  + ++ V     N TNL+ L +        I               
Sbjct: 96  PLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEI--------------- 139

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
                             L  L EL +    LR             N  S  L  +  I 
Sbjct: 140 -----------RRIDFAGLTSLNELEIKALSLR-------------NYQSQSLKSIRDIH 175

Query: 268 RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327
            L L  ++      +     LS ++        +     S                    
Sbjct: 176 HLTLHLSESAFLLEIF-ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK-------- 226

Query: 328 HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH 387
                          L D S + L       LL+    LS +   + +L+G         
Sbjct: 227 -------KLAFRGSVLTDESFNELLK-----LLRYILELSEVEFDDCTLNG--------- 265

Query: 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKL 447
                         G+              +    +  L + +  L   L +  + L K+
Sbjct: 266 -------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL---YGNIPARLGNLSSLNDIMMASNH 504
            R+ ++ +           +   LE L +S+N +   Y    A  G   SL  ++++ NH
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 505 LQ--GPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 562
           L+           L  L  LD+S N       SC     ++ ++LS   +   +K     
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIP- 430

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
              ++  LD+S N+   +       L RL+ L ++ N L+  +P+       L ++ +S 
Sbjct: 431 --QTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISR 482

Query: 623 NNL 625
           N L
Sbjct: 483 NQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 2e-27
 Identities = 82/495 (16%), Positives = 169/495 (34%), Gaps = 80/495 (16%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIF-SSLA 147
           L++S   P   L+ L+L  N                L+ L+ L +G     + I     A
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL---FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
           GL+SL  L +    L+ +    ++L +  ++  LTL  S     +       +S++ L +
Sbjct: 146 GLTSLNELEIKALSLR-NYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
           ++                L   Q   +  +++   +  L        ++      L  + 
Sbjct: 204 RD--------------TNLARFQFSPLPVDEVSSPMKKLAFRGSV--LTDESFNELLKLL 247

Query: 268 RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327
           R  L  ++ +       F + +   +     +E  V  E     T    +  + +    +
Sbjct: 248 RYILELSEVE-------FDDCTLNGLGDFNPSESDVVSELGKVET--VTIRRLHIPQFYL 298

Query: 328 HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH 387
                        ++ +   +S +    P    ++  +L  L L  N +           
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV---------- 347

Query: 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLH-----GQLFSKKN 442
                 ++  +  +G  P                +L+ LVLS+N L      G++     
Sbjct: 348 ----EEYLKNSACKGAWP----------------SLQTLVLSQNHLRSMQKTGEILLT-- 385

Query: 443 YLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMAS 502
            L+ L  L +  N F   +P S     ++  L +S   +   +        +L  + +++
Sbjct: 386 -LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLDVSN 440

Query: 503 NHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF 562
           N+L     L    L  L+ L +S N +  +LP  S    +  + +S+N L      G F 
Sbjct: 441 NNLDS-FSLF---LPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPD-GIFD 494

Query: 563 NRSSIVTLDLSYNSF 577
             +S+  + L  N +
Sbjct: 495 RLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 2e-26
 Identities = 76/545 (13%), Positives = 163/545 (29%), Gaps = 84/545 (15%)

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYV 303
           L  N++T  I    L    +++ L L  ++     ++E   F++L  L+      N +  
Sbjct: 33  LSFNKIT-YIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHA-TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN 362
              S         L+ ++L G+            N  +L+ +   +     E        
Sbjct: 89  LSSSWFGPLSS--LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 363 NPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFN 422
             +L+ L ++  SL       ++    +  L +  +            +     A    +
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA---------FLLEIFADILSS 197

Query: 423 LEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY 482
           + YL L + +L    FS        + +   A   +    +S +   +L    +  + + 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 483 GNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST- 541
                   + +         +       L   +   +  L + +  +   L +  S    
Sbjct: 258 ------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW---IERLIRLRYLILAN 598
           ++++ +  + ++  +      +  S+  LDLS N                  L+ L+L+ 
Sbjct: 312 VKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 599 NNLE--GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL------HNNGDNVGSSAP 650
           N+L    +    L  LK L  +D+S N        C     +            V +  P
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430

Query: 651 TFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI 710
                                                    +  +D+S N L        
Sbjct: 431 Q---------------------------------------TLEVLDVSNNNLD-SFSLF- 449

Query: 711 GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE-LNALVVFSV 769
             L  ++ L  S N L  +   S      +  + +S N L   +P  + + L +L    +
Sbjct: 450 --LPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWL 504

Query: 770 AHNNL 774
             N  
Sbjct: 505 HTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  108 bits (271), Expect = 1e-24
 Identities = 82/535 (15%), Positives = 152/535 (28%), Gaps = 99/535 (18%)

Query: 254 NISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHST 311
           + +S P     +++ L LS+N+      +        + L+V   + + I          
Sbjct: 16  SFTSIPSGLTAAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSRI---------- 62

Query: 312 TPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVL 371
                        + I        Y+   LE +D SD++L     +       +L  L L
Sbjct: 63  -------------NTIE---GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNL 105

Query: 372 RNNSLSG-PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSE 430
             N        +      +L  L +        I              G  +L  L +  
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI--------RRIDFAGLTSLNELEIKA 157

Query: 431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
            SL          +R +  L L  +     +       S +  L + D NL     + L 
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 491 NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
                + +   +          F +L  L    L  + +           T+  +     
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNP 271

Query: 551 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLC 610
                +         +I  L +       ++      L +++ + + N+ +     +   
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 611 GLKQLRLIDLSNNNL---FGQIPGCLDN-TSL------HNNGDNVGSSAPTFNPNRRTTY 660
            LK L  +DLS N +   + +   C     SL       N+  ++  +       +  T 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720
                                             +D+S N     +P        +R LN
Sbjct: 392 ----------------------------------LDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            S   +  V       L   E LDVS+NNL+      L  L  L    ++ N L 
Sbjct: 417 LSSTGIRVVKTCIPQTL---EVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.5 bits (199), Expect = 8e-16
 Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 26/328 (7%)

Query: 467 NCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE 526
           +C           +   +IP+ L   +++  + ++ N +      +      L++L L  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 527 NNISGSLP--SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG-NIPY 583
           + I+ ++   +  S  +++ + LS N L   L    F   SS+  L+L  N +    +  
Sbjct: 60  SRIN-TIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 584 WIERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDLSNNNLFGQIPGCLDN------T 636
               L  L+ L + N     E+      GL  L  +++   +L       L +       
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 637 SLHNNG-DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV 695
           +LH +    +         + R       + L + +       E+S   K          
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN--------QVESLDVSH 747
           D S N+L  ++   I +L+ +   + + N L    P     ++         +  L +  
Sbjct: 237 DESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 748 NNLNGKIPPQLVELNALVVFSVAHNNLS 775
             L   +      L  +   +V ++ + 
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 44/244 (18%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIF---S 144
              +++ +  ++++ + ++++ +     +        L  L+ L+L  NL         +
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSF----SQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR 204
                 SL+TL L  N L+      E L    NL  L +  ++ H               
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM------------- 402

Query: 205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDL----RGTLPCLYLNQLTGNISSSPL 260
                           +       ++ L++    +          L +  ++ N   S  
Sbjct: 403 ---------------PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS 447

Query: 261 IHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV 320
           + L  ++ L++S N+ +   +L        L V     N++   P+          L+ +
Sbjct: 448 LFLPRLQELYISRNKLK---TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS--LQKI 502

Query: 321 SLSG 324
            L  
Sbjct: 503 WLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
            D      T  IP  +     +++L+ S N +T +          ++ L +  + +N  I
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 755 PPQ-LVELNALVVFSVAHNNLSA 776
                  L +L    ++ N+LS+
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSS 88

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 5e-31
 Identities = 79/431 (18%), Positives = 155/431 (35%), Gaps = 86/431 (19%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGY 159
             TL      I        +   + L++     L +    + +  +   L S+  L +  
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 160 NRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDD 219
            ++  SI   + ++  TNLE L L  +   I+ +  ++    L  L I   ++      D
Sbjct: 54  EKVA-SI---QGIEYLTNLEYLNL--NGNQITDISPLSNLVKLTNLYIGTNKIT-----D 102

Query: 220 EEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP 279
              L  L +L+EL+            L  + ++     SPL +LT +  L L  N     
Sbjct: 103 ISALQNLTNLRELY------------LNEDNIS---DISPLANLTKMYSLNLGANHNLS- 146

Query: 280 FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339
             L P  N++ L   +   +++                        D+       + N  
Sbjct: 147 -DLSPLSNMTGLNYLTVTESKV-----------------------KDVTP-----IANLT 177

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
           DL  +  + + ++   P   L +  +L       N ++    TP+     L++L +  N 
Sbjct: 178 DLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNK 232

Query: 400 FQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG 459
                PL                L +L +  N +     +    L KL  L++ +N  + 
Sbjct: 233 ITDLSPLA-----------NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519
                L+N S+L  L++++N L       +G L++L  + ++ NH+    PL    L+ +
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKM 335

Query: 520 EILDLSENNIS 530
           +  D +   I 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (295), Expect = 1e-28
 Identities = 71/379 (18%), Positives = 137/379 (36%), Gaps = 39/379 (10%)

Query: 248 LNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPE 306
           L  L   I+   P   L    R  L          +     L  +        ++     
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKVASIQG 61

Query: 307 SSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNL 366
             + T     LE ++L+G+ I  T    L N   L  +    + +  +     L+N  NL
Sbjct: 62  IEYLT----NLEYLNLNGNQI--TDISPLSNLVKLTNLYIGTNKIT-DISA--LQNLTNL 112

Query: 367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYL 426
             L L  +++S    +P+     + +L++  N    ++   +              L YL
Sbjct: 113 RELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLS-PLS---------NMTGLNYL 160

Query: 427 VLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP 486
            ++E+ +     +    L  L  L L+ N      P  L++ + L       N +    P
Sbjct: 161 TVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

Query: 487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVH 546
             + N++ LN + + +N +    PL    L+ L  L++  N IS  + +    + ++ ++
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQIS-DINAVKDLTKLKMLN 271

Query: 547 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP 606
           +  N +          N S + +L L+ N         I  L  L  L L+ N++    P
Sbjct: 272 VGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 607 NQLCGLKQLRLIDLSNNNL 625
             L  L ++   D +N  +
Sbjct: 329 --LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (293), Expect = 2e-28
 Identities = 77/429 (17%), Positives = 146/429 (34%), Gaps = 84/429 (19%)

Query: 124 GLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTL 183
           G + L  L        N IF   A L+      L    +   +    T +   ++  L +
Sbjct: 1   GAATLATLPAP----INQIFP-DADLAEGIRAVLQKASVTDVV----TQEELESITKLVV 51

Query: 184 DYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTL 243
                 ++ ++ I   T+L+ L++   ++      D   L  L  L  L           
Sbjct: 52  AGE--KVASIQGIEYLTNLEYLNLNGNQIT-----DISPLSNLVKLTNL----------- 93

Query: 244 PCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYV 303
             +  N++T     S L +LT++  L+L+ +       + P  NL+K+   +   N    
Sbjct: 94  -YIGTNKIT---DISALQNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHN-- 144

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
                                     +    L N   L  +  ++S +K   P   + N 
Sbjct: 145 -------------------------LSDLSPLSNMTGLNYLTVTESKVKDVTP---IANL 176

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
            +L +L L  N +     +P+     L       N      P+                L
Sbjct: 177 TDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITPVA-----------NMTRL 223

Query: 424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG 483
             L +  N +     S    L +L  L +  N  +     ++ + ++L+ L +  N +  
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI-S 278

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
           +I   L NLS LN + + +N L          L  L  L LS+N+I+  +   +S S + 
Sbjct: 279 DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRPLASLSKMD 336

Query: 544 QVHLSKNML 552
               +  ++
Sbjct: 337 SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (282), Expect = 5e-27
 Identities = 79/421 (18%), Positives = 141/421 (33%), Gaps = 78/421 (18%)

Query: 182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241
           TL      I+ +   A      R  +Q   V      D      L  + +L + G  +  
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVT-----DVVTQEELESITKLVVAGEKVA- 57

Query: 242 TLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301
                         S   + +LT++E L L+ NQ      + P  NL KL       N+I
Sbjct: 58  --------------SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKI 100

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
                  + T     L  + L+  +I  +    L N   +  ++   ++   +     L 
Sbjct: 101 TDISALQNLT----NLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSP--LS 152

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
           N   L+ L +  + +     TPI     L +L ++ N  +   PL               
Sbjct: 153 NMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISPLA-----------SLT 199

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
           +L Y     N +     +    + +L  L +  N  T   P  L+N S+L  L +  N +
Sbjct: 200 SLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

Query: 482 YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST 541
             +I A + +L+ L  + + SN +     L    L+ L  L L+ N +            
Sbjct: 256 -SDINA-VKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDME------ 305

Query: 542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNL 601
                                  +++ TL LS N  +   P  +  L ++     AN  +
Sbjct: 306 ------------------VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

Query: 602 E 602
           +
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (281), Expect = 6e-27
 Identities = 67/415 (16%), Positives = 143/415 (34%), Gaps = 75/415 (18%)

Query: 366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEY 425
            +TL      ++  F  P           + K      +  E              ++  
Sbjct: 2   AATLATLPAPINQIF--PDADLAEGIRAVLQKASVTDVVTQE-----------ELESITK 48

Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
           LV++   +         YL  L  L+L+ N  T   P  LSN  +L  LY+  N +    
Sbjct: 49  LVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TD 102

Query: 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQV 545
            + L NL++L ++ +  +++    PL    L  +  L+L  N+    L   S+ + +  +
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160

Query: 546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605
            ++++ +          N + + +L L+YN      P  +  L  L Y     N +    
Sbjct: 161 TVTESKVKDV---TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL-----HNNGDNVGSSAPTFNPNRRTTY 660
           P  +  + +L  + + NN +   +    + + L       N                   
Sbjct: 216 P--VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQ------------------ 254

Query: 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720
                 +    ++             K L K+  +++  N+++      +  L+ + +L 
Sbjct: 255 ------ISDINAV-------------KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            ++N L          L  + +L +S N++    P  L  L+ +     A+  + 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (252), Expect = 4e-23
 Identities = 75/388 (19%), Positives = 138/388 (35%), Gaps = 82/388 (21%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
               + +  L +    +A       ++ +  L+ L+ LNL  N   +   S L+ L  L 
Sbjct: 40  QEELESITKLVVAGEKVA------SIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            L +G N++         L N TNL +L L+    +IS +  +A  T +  L++      
Sbjct: 92  NLYIGTNKITDI----SALQNLTNLRELYLNED--NISDISPLANLTKMYSLNLGANH-- 143

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSY 273
                D   L  +  L  L +  + ++                 +P+ +LT +  L L+Y
Sbjct: 144 --NLSDLSPLSNMTGLNYLTVTESKVK---------------DVTPIANLTDLYSLSLNY 186

Query: 274 NQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPK 333
           NQ +    + P  +L+ L  F+   N+I      ++ T    +L S+ +  + I      
Sbjct: 187 NQIE---DISPLASLTSLHYFTAYVNQITDITPVANMT----RLNSLKIGNNKI------ 233

Query: 334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDAL 393
                          ++L        L N   L+ L +  N +S      ++    L  L
Sbjct: 234 ---------------TDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270

Query: 394 HVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLD 453
           +V  N       L                L  L L+ N L  +       L  L  L L 
Sbjct: 271 NVGSNQISDISVLN-----------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 454 ANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
            N+ T   P  L++ S+++    ++  +
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.2 bits (248), Expect = 1e-22
 Identities = 59/291 (20%), Positives = 115/291 (39%), Gaps = 35/291 (12%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
           L+   +L  L++ +N I        +  L  L+ L+ L L  +  ++   S LA L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKIT------DISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
           +L+LG N     +     L N T L  LT+  +   +  +  IA  T L  LS+   ++ 
Sbjct: 136 SLNLGANHNLSDL---SPLSNMTGLNYLTV--TESKVKDVTPIANLTDLYSLSLNYNQI- 189

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLR-----GTLPCLYLNQLTGN--ISSSPLIHLTSI 266
               +D   L  L  L       N +        +  L   ++  N     SPL +L+ +
Sbjct: 190 ----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQL 245

Query: 267 ERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326
             L +  NQ      +    +L+KLK+ +   N+I      ++ +    QL S+ L+ + 
Sbjct: 246 TWLEIGTNQIS---DINAVKDLTKLKMLNVGSNQISDISVLNNLS----QLNSLFLNNNQ 298

Query: 327 IHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
           +     + +    +L  +  S +++    P   L +   + +    N  + 
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (299), Expect = 2e-28
 Identities = 73/431 (16%), Positives = 137/431 (31%), Gaps = 31/431 (7%)

Query: 359 LLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAM 418
           + +N        + ++SL     +  Q  W++  L +S N        ++          
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA--------- 55

Query: 419 GCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
               LE L LS N L+         L  L  L L+ NY        L     +E L+ ++
Sbjct: 56  PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAAN 108

Query: 479 NNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG-SLPSCS 537
           NN+   +           +I +A+N +     L+    + ++ LDL  N I   +    +
Sbjct: 109 NNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 538 SHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLIL 596
           + S  ++ ++L  N +Y  +K    F  + + TLDLS N  +  +    +    + ++ L
Sbjct: 166 ASSDTLEHLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 597 ANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNR 656
            NN L   +   L   + L   DL  N          D  S +     V          +
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 657 RTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNI 716
                  P++                        K + +       T  +  +       
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 717 RALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP---PQLVELNALVVFSVAHNN 773
           R ++        VI           +L+     L+ ++        EL+  +  +V    
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 774 LSAAERNPGPY 784
           L  A     P 
Sbjct: 399 LQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (258), Expect = 2e-23
 Identities = 55/332 (16%), Positives = 109/332 (32%), Gaps = 57/332 (17%)

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLE 520
           I +   N +R +   ++D++L   + +   +  ++ ++ ++ N L      +      LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580
           +L+LS N +        S ST++ + L+ N +             SI TL  + N+ S  
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-R 113

Query: 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL----FGQIPGCLDN- 635
           +     R    + + LANN +            +++ +DL  N +    F ++    D  
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 636 --TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY 693
              +L  N                                      I          K+ 
Sbjct: 172 EHLNLQYN-------------------------------------FIYDVKGQVVFAKLK 194

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            +DLS NKL   + P+      +  ++  +N L  +I  +      +E  D+  N  +  
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 754 IPPQLVELNALVVFSVAHNNLSAAERNPGPYC 785
                       V +VA   +          C
Sbjct: 253 TLRDFF-SKNQRVQTVAKQTVKKLTGQNEEEC 283

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.5 bits (235), Expect = 2e-20
 Identities = 60/500 (12%), Positives = 141/500 (28%), Gaps = 59/500 (11%)

Query: 285 FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELV 344
             N ++ K+     + +     S   +     ++ + LSG+ +       L     LEL+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAW--NVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 345 DFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNI 404
           + S + L        L++   L TL L NN +       +     ++ LH + N     +
Sbjct: 64  NLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 405 PLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG-EIPK 463
               G              + + L+ N +       +    ++  L L  N        +
Sbjct: 115 SCSRGQ-----------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523
             ++   LE L +  N +Y ++  ++   + L  + ++SN L   +  EF     +  + 
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS-GNIP 582
           L  N +   +                                ++   DL  N F  G + 
Sbjct: 221 LRNNKLV-LIEK------------------------ALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 583 YWIERLIRLRYLIL-ANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN 641
            +  +  R++ +       L G+   +               +L       L       +
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701
               G  + T               ++  +    T  +               ++     
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL----RKQAKITLEQKKKA 371

Query: 702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK-IPPQLVE 760
           L  ++         +             +  +    + ++ L           +  Q V+
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 761 LNALVVFSVAHNNLSAAERN 780
            NA+  + +  +  +     
Sbjct: 431 NNAIRDWDMYQHKETQLAEE 450

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 5e-20
 Identities = 62/467 (13%), Positives = 128/467 (27%), Gaps = 49/467 (10%)

Query: 125 LSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLD 184
            ++ K+  +  +    ++ S      +++ L L  N L         L  FT LE L L 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLELLNL- 65

Query: 185 YSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG--- 241
            SS  +     + + ++L+ L + N  V        + L     ++ LH   N++     
Sbjct: 66  -SSNVLYETLDLESLSTLRTLDLNNNYV--------QELLVGPSIETLHAANNNISRVSC 116

Query: 242 ----TLPCLYL--NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFS 295
                   +YL  N++T  +        + ++ L L  N+       E   +   L+  +
Sbjct: 117 SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 296 GEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEF 355
            ++N IY             +L+++ LS + + A       +   +  +   ++ L    
Sbjct: 176 LQYNFIYDVKGQVVFA----KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 356 PNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSH 415
               L+ + NL    LR N     F       +      V     Q    L         
Sbjct: 230 EK-ALRFSQNLEHFDLRGN----GFHCGTLRDFFSKNQRVQTVAKQTVKKL------TGQ 278

Query: 416 LAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT-------GEIPKSLSNC 468
               C                      +  +L  L    +            +     N 
Sbjct: 279 NEEECTVPTLGHYGAYCCED---LPAPFADRLIALKRKEHALLSGQGSETERLECERENQ 335

Query: 469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN 528
           +R   +          I        +   +      L   +         L+        
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

Query: 529 ISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
                 +    S +Q +                   ++I   D+  +
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 6e-20
 Identities = 54/480 (11%), Positives = 120/480 (25%), Gaps = 98/480 (20%)

Query: 168 VKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLG 227
           + E   N    +   +  SSL  ++     +  ++K L +                    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG------------------ 43

Query: 228 HLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFN 287
                                N L+  IS++ L   T +E L LS N            +
Sbjct: 44  ---------------------NPLS-QISAADLAPFTKLELLNLSSNVLY---ETLDLES 78

Query: 288 LSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFS 347
           LS L+      N +               +E++  + ++I              + +  +
Sbjct: 79  LSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLA 128

Query: 348 DSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLE 407
           ++ +     +        +  L L+ N +                  V+      +    
Sbjct: 129 NNKIT-MLRDLDEGCRSRVQYLDLKLNEID----------------TVNFAELAASSD-- 169

Query: 408 IGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSN 467
                          LE+L L  N ++      +    KL  L L +N     +     +
Sbjct: 170 --------------TLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN 527
            + +  + + +N L   I   L    +L    +  N        +F       +  +++ 
Sbjct: 213 AAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQ 270

Query: 528 NISG-SLPSCSSHSTIQQVHLSKNML----YGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 582
            +   +  +    +     H                     R     L    +     + 
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLE 329

Query: 583 YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD-NTSLHNN 641
              E   R R +          +       +    ++     L  Q+      +  L   
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 4e-19
 Identities = 64/457 (14%), Positives = 139/457 (30%), Gaps = 49/457 (10%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           Q  ASL      ++ L L  N ++          L+  +KL+LLNL  N+        L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            LS+LRTL L  N ++        L    ++E L    +  +IS + S +     K + +
Sbjct: 78  SLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN--NISRV-SCSRGQGKKNIYL 127

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG-----------TLPCLYL--NQLTGN 254
            N ++       +        +Q L +  N++             TL  L L  N +   
Sbjct: 128 ANNKITML---RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-- 182

Query: 255 ISSSPLIHLTSIERLFLSYNQFQIPFSLEP-FFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
                 +    ++ L LS N+      + P F + + +   S   N++ +  ++   +  
Sbjct: 183 -DVKGQVVFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ- 237

Query: 314 KFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN 373
              LE   L G+  H    +  ++++   +   +   +K +      +     +      
Sbjct: 238 --NLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

Query: 374 NSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL 433
                           L     +    QG+    +     +           +   +   
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA-----RQREIDALKEQY 348

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
              +       +    L         ++       + L+G             A      
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
                 +   + +  +  +  Q N +   D+ ++  +
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (274), Expect = 3e-25
 Identities = 95/514 (18%), Positives = 170/514 (33%), Gaps = 68/514 (13%)

Query: 126 SKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDY 185
            K  +LN+ +N  +    S +  LS LR L + +NR++  +D+         LE L L +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDI-SVFKFNQELEYLDLSH 78

Query: 186 SSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC 245
                           L ++S                     +L+ L             
Sbjct: 79  --------------NKLVKISCH----------------PTVNLKHLD------------ 96

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEF-NEIYVE 304
           L  N            +++ ++ L LS    +   S+ P  +L+  KV           E
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFS---DSNLKGEFPNWLLK 361
                       L  V  +  + H      +    +LEL +     + N    F + L K
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQP-----HWHLDALHVSKNFFQGNIPLEIGVYFPSHL 416
              N     L  N++   + + I+      H  +    +S    QG +      Y  + L
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 417 AMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYM 476
                 L    +  +               +   +   +          S  S    L  
Sbjct: 276 K----ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQ--GPIPLEFCQLNYLEILDLSENNISGSLP 534
           S+N L   +    G+L+ L  +++  N L+    I     Q+  L+ LD+S+N++S    
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 535 --SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT-LDLSYNSFSGNIPYWIERLIRL 591
              CS   ++  +++S N+    L    F      +  LDL  N    +IP  + +L  L
Sbjct: 392 KGDCSWTKSLLSLNMSSNI----LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEAL 446

Query: 592 RYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           + L +A+N L+         L  L+ I L  N  
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 85/535 (15%), Positives = 161/535 (30%), Gaps = 86/535 (16%)

Query: 249 NQLTGNISSSPLIHL-----TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEI 301
           ++   + S + LIH+          L +S N       L      +LSKL++     N I
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRI 57

Query: 302 -YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLL 360
            Y++           +LE + LS + +         N   L+ +D S +           
Sbjct: 58  QYLDISVFKFNQ---ELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEF 111

Query: 361 KNNPNLSTLVLRNNSL-SGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
            N   L  L L    L           +     L + + + +   P  +  +    L + 
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI- 170

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEG------ 473
                 +  +    H  L      +  L   ++       +    LS  ++L+       
Sbjct: 171 ------VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

Query: 474 LYMSDNNLYGNIPARLGNLS--------SLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525
           L +++     N   R+  L         S++++ +               L  L I  + 
Sbjct: 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 526 ENNISGSLPSCS---SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 582
            +             S+  I+   +S   +   +        S  + LD S N  +  + 
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 583 YWIERLIRLRYLILANNNLE--GEVPNQLCGLKQLRLIDLSNNNLFGQIPGC----LDNT 636
                L  L  LIL  N L+   ++      +K L+ +D+S N++             + 
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 637 SLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVD 696
              N   N+ +         R                                      D
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVL----------------------------------D 427

Query: 697 LSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
           L  NK+   IP Q+ KL  ++ LN + N L  V    F  L  ++ + +  N  +
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 7e-17
 Identities = 67/432 (15%), Positives = 140/432 (32%), Gaps = 58/432 (13%)

Query: 225 RLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP 284
            L  L+ L +  N ++              +  S       +E L LS+N+      +  
Sbjct: 43  SLSKLRILIISHNRIQ-------------YLDISVFKFNQELEYLDLSHNKLV---KI-S 85

Query: 285 FFNLSKLKVFSGEFNEIYVEPESS--HSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLE 342
                 LK     FN     P      + +   QL+ + LS + +  +    + + +  +
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 343 LVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQG 402
           ++         +     L++    +T  L     +      I         ++  +  + 
Sbjct: 143 VLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 403 NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP 462
            +      YF S LA    N +   L+                 L  +    N F     
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLT-----------------LNNIETTWNSFIR--I 240

Query: 463 KSLSNCSRLEGLYMSDNNLYGNIPARLGNLS-----SLNDIMMASNHLQGPIPLEFCQLN 517
             L   + +    +S+  L G +  R  + S     +L+   + S+    P    +   +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 518 YLEILDLSENNI-SGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 576
            + I + + +      +   S  S    +  S N+L     +    + + + TL L  N 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQ 359

Query: 577 FS--GNIPYWIERLIRLRYLILANNNLEGEVPNQLC-GLKQLRLIDLSNNNL----FGQI 629
                 I     ++  L+ L ++ N++  +     C   K L  +++S+N L    F  +
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 630 PGCLDNTSLHNN 641
           P  +    LH+N
Sbjct: 420 PPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 75/447 (16%), Positives = 148/447 (33%), Gaps = 53/447 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           +L      P   L+ L L  N                +S+LK L L       S    +A
Sbjct: 80  KLVKISCHPTVNLKHLDLSFNAFDALPICK---EFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            L+  + L +           KE  +   +    +L            I   +     ++
Sbjct: 137 HLNISKVLLVLGETYG----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
           +   +   L D++     L  L +L         TL  +        I    L+  T++ 
Sbjct: 193 ELSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTW-NSFIRILQLVWHTTVW 250

Query: 268 RLFLSYNQFQIPFSLEPFF----NLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
              +S  + Q       F     +L  L +     +         +       +++ ++S
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 324 GSD-IHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT 382
           G+  +H   P  +        +DFS++ L  +       +   L TL+L+ N L      
Sbjct: 311 GTRMVHMLCPSKISP---FLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLK----- 361

Query: 383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK- 441
                                +     +           +L+ L +S+NS+         
Sbjct: 362 --------------------ELSKIAEM-TTQMK-----SLQQLDISQNSVSYDEKKGDC 395

Query: 442 NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501
           ++ + L  L++ +N  T  I + L    R++ L +  N +  +IP ++  L +L ++ +A
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA 452

Query: 502 SNHLQGPIPLEFCQLNYLEILDLSENN 528
           SN L+      F +L  L+ + L  N 
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 76/455 (16%), Positives = 133/455 (29%), Gaps = 77/455 (16%)

Query: 348 DSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSKNFFQGNIPL 406
             N        + K N  L  L L +N L        +     L  L +S N F     L
Sbjct: 53  SHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN----LKHLDLSFNAFDA---L 105

Query: 407 EIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLA-RLHLDANYFTGEIPKSL 465
            I   F  +++     L++L LS   L         +L      L L   Y   E P+ L
Sbjct: 106 PICKEF-GNMS----QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 466 SNCSRLE-------------GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLE 512
            + +                 L +S   +     + +  +   N      + L       
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 513 FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF----NRSSIV 568
                 L  ++ + N+    +     H+T+    +S   L G L +  F     +  ++ 
Sbjct: 221 KLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628
              +  + F     Y  E    +       +            +     +D SNN L   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 629 IPGCLDN------TSLHNNG-DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEIS 681
           +     +        L  N    +   A      +                         
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ--------------------- 378

Query: 682 FSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQV 740
                        +D+S N ++ +          ++ +LN S N LT  I        ++
Sbjct: 379 -------------LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRI 423

Query: 741 ESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
           + LD+  N +   IP Q+V+L AL   +VA N L 
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 75/433 (17%), Positives = 140/433 (32%), Gaps = 62/433 (14%)

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
              + L +  N +S  + + I     L  L +S N  Q    L+I V+           L
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY---LDISVF------KFNQEL 71

Query: 424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG-EIPKSLSNCSRLEGLYMSDNNLY 482
           EYL LS N L             L  L L  N F    I K   N S+L+ L +S  +L 
Sbjct: 72  EYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 483 GNIPARLGNLSSLNDIMMASNHLQGPIP---LEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +    + +L+    +++             L+      L I+  +       L      
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVT------LDLSYNSFSGNIPYWIERLIR--- 590
               ++   K +L            + + T      L L+    + N    I +L+    
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 591 LRYLILANNNLEGEVPNQL-----CGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNV 645
           + Y  ++N  L+G++  +        LK L +  + ++          +  S  N  +  
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 646 GSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE 705
            S     +           S                             +D S N LT  
Sbjct: 309 VSGTRMVHML----CPSKISPFLH-------------------------LDFSNNLLTDT 339

Query: 706 IPPQIGKLTNIRALNFSHNNLTGVIPVS--FSNLNQVESLDVSHNNLNGKIPPQLVE-LN 762
           +    G LT +  L    N L  +  ++   + +  ++ LD+S N+++            
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 763 ALVVFSVAHNNLS 775
           +L+  +++ N L+
Sbjct: 400 SLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 66/358 (18%), Positives = 114/358 (31%), Gaps = 40/358 (11%)

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLE 520
           +PK LS   +   L +S N +     + + +LS L  ++++ N +Q      F     LE
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580
            LDLS N +   +  C     ++ + LS N          F N S +  L LS      +
Sbjct: 73  YLDLSHNKLV-KIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 581 IPYWIERLIRLR-YLILANNNLEGEVPNQLCGLKQLRL-IDLSNNNLFGQIPGCLDNTSL 638
               I  L   +  L+L     E E P  L       L I    N  F  I      T  
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 639 HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYG---- 694
           +    N+         +   +         K  ++     E +++   + L  ++     
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 695 -VDLSCNKLTGEIPPQIG-----------------------------KLTNIRALNFSHN 724
              +S  KL G++  +                                 +N+   NF+ +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 725 NLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPG 782
               V  +  S ++    LD S+N L   +      L  L    +  N L    +   
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 35/202 (17%), Positives = 77/202 (38%), Gaps = 24/202 (11%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
             + +   F  +   +   +              S +S    L+   NL  +++F +   
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF-TSLKRLSI 207
           L+ L TL L  N+LK    + E      +L+ L +  +S+     K   ++  SL  L++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC------------LYLNQLTGNI 255
            +  +   +       C    ++ L +  N ++ ++P             +  NQL  ++
Sbjct: 407 SSNILTDTIFR-----CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SV 459

Query: 256 SSSPLIHLTSIERLFLSYNQFQ 277
                  LTS+++++L  N + 
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 48/309 (15%), Positives = 108/309 (34%), Gaps = 25/309 (8%)

Query: 73  LYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLN 132
           +   + ++F +     +          ++ +  D+           L+    LS L L N
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 133 LGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISI 192
           +     +      L   +++   S+   +L+G +D ++   + T+L+ L++      +  
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 193 LKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYL--NQ 250
                 +     ++I+N                +   + +HM           L    N 
Sbjct: 290 FPQSYIYEIFSNMNIKN--------------FTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 251 LTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSH 309
           LT +       HLT +E L L  NQ + +    E    +  L+      N +  + +   
Sbjct: 336 LT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 310 STTPKFQLESVSLSGSDI-HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLST 368
            +  K  L S+++S + +    F         ++++D   + +K   P  ++K    L  
Sbjct: 395 CSWTK-SLLSLNMSSNILTDTIFRCLPPR---IKVLDLHSNKIK-SIPKQVVK-LEALQE 448

Query: 369 LVLRNNSLS 377
           L + +N L 
Sbjct: 449 LNVASNQLK 457

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 2e-24
 Identities = 65/340 (19%), Positives = 117/340 (34%), Gaps = 51/340 (15%)

Query: 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHL 505
              L L  N          ++   LE L +++N +   +      NL +L  + + SN L
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 506 QGPIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNR 564
           +      F  L+ L  LD+SEN I   L         ++ + +  N L   + +  F   
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGL 151

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           +S+  L L   + +      +  L  L  L L + N+          L +L+++++S+  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 625 LFGQI-PGCLDNTSL------HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT 677
               + P CL   +L      H N   V   A       R                    
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF------------------- 252

Query: 678 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSN 736
                            ++LS N ++  I   +  +L  ++ +      L  V P +F  
Sbjct: 253 -----------------LNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 737 LNQVESLDVSHNNLNGKIPPQLVE-LNALVVFSVAHNNLS 775
           LN +  L+VS N L   +   +   +  L    +  N L+
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 1e-22
 Identities = 64/344 (18%), Positives = 124/344 (36%), Gaps = 57/344 (16%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
               L L +N   +L+   F+       L  L L+ N  +   P + +N   L  L +  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS---FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 479 NNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC- 536
           N L   IP      LS+L  + ++ N +   +   F  L  L+ L++ +N++   +    
Sbjct: 90  NRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 537 -SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
            S  ++++Q+ L K  L   +      +   ++ L L + + +    Y  +RL RL+ L 
Sbjct: 148 FSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 596 LANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP-GCLDNTS------LHNNGDNVGSS 648
           +++      +         L  + +++ NL   +P   + +        L  N       
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNP------ 259

Query: 649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 708
                             +   E  M              L ++  + L   +L   + P
Sbjct: 260 ------------------ISTIEGSML-----------HELLRLQEIQLVGGQLA-VVEP 289

Query: 709 QI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
                L  +R LN S N LT +    F ++  +E+L +  N L 
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.5 bits (230), Expect = 9e-20
 Identities = 70/389 (17%), Positives = 111/389 (28%), Gaps = 91/389 (23%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
             +   L L  N I    ++      +    L+ L L  N+ +     +   L +LRTL 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  NRLK  I         +NL  L +  + +             L     Q+       
Sbjct: 87  LRSNRLK-LIP-LGVFTGLSNLTKLDISENKI-----------VILLDYMFQD------- 126

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
                    L +L+ L +G NDL               IS      L S+E+L L     
Sbjct: 127 ---------LYNLKSLEVGDNDLV-------------YISHRAFSGLNSLEQLTLEKCNL 164

Query: 277 Q-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFL 335
             IP       +L  L V       I    + S       +L+ + +S      T     
Sbjct: 165 TSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLEISHWPYLDTMTPNC 220

Query: 336 YNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV 395
               +L  +  +  NL    P   +++   L  L L  N +S                 +
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS----------------TI 263

Query: 396 SKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHL 452
             +                        L+ + L       +    F     L  L  L++
Sbjct: 264 EGSMLH-----------------ELLRLQEIQLVGGQLAVVEPYAFRG---LNYLRVLNV 303

Query: 453 DANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
             N  T        +   LE L +  N L
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.2 bits (224), Expect = 5e-19
 Identities = 55/315 (17%), Positives = 109/315 (34%), Gaps = 52/315 (16%)

Query: 477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC 536
                   +P  +   +    + +  N ++     EF    +LE L+L+EN +S ++   
Sbjct: 19  HRKRF-VAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPG 74

Query: 537 --SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYL 594
             ++   ++ + L  N L   +  G F   S++  LD+S N     + Y  + L  L+ L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 595 ILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNG-DNVGS 647
            + +N+L         GL  L  + L   NL       L +        L +   + +  
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 648 SAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 707
            +       +                                     +++S       + 
Sbjct: 194 YSFKRLYRLKV------------------------------------LEISHWPYLDTMT 217

Query: 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQ-LVELNALVV 766
           P      N+ +L+ +H NLT V  ++  +L  +  L++S+N ++  I    L EL  L  
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQE 276

Query: 767 FSVAHNNLSAAERNP 781
             +    L+  E   
Sbjct: 277 IQLVGGQLAVVEPYA 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 27/254 (10%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            +   + T    L  L +  N I   + +        L  LK L +G N        + +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIV-ILLDYM---FQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
           GL+SL  L+L    L  SI   E L +   L  L L    L+I+ ++   +F  L RL +
Sbjct: 150 GLNSLEQLTLEKCNLT-SIP-TEALSHLHGLIVLRL--RHLNINAIRD-YSFKRLYRLKV 204

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPC-------------LYLNQLTGN 254
                   L           +L  L +   +L   +P              L  N ++  
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 255 ISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPK 314
           I  S L  L  ++ + L   Q  +      F  L+ L+V +   N++    ES   +   
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG- 320

Query: 315 FQLESVSLSGSDIH 328
             LE++ L  + + 
Sbjct: 321 -NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 58/305 (19%), Positives = 114/305 (37%), Gaps = 34/305 (11%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
           LN      F  LE L L+ N ++  VE G     + L  L+ L L  N           G
Sbjct: 47  LNQDEFASFPHLEELELNENIVS-AVEPGA---FNNLFNLRTLGLRSNRLKLIPLGVFTG 102

Query: 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLKRL 205
           LS+L  L +  N++   +       +  NL+ L +  +   +  +    AF    SL++L
Sbjct: 103 LSNLTKLDISENKIV-ILL-DYMFQDLYNLKSLEVGDN--DLVYISH-RAFSGLNSLEQL 157

Query: 206 SIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR----GTLPCLY--------LNQLTG 253
           +++   +        E L  L  L  L +   ++      +   LY              
Sbjct: 158 TLEKCNLTSI---PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 254 NISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTT 312
            ++ +  ++  ++  L +++     +P+      +L  L+  +  +N I     S     
Sbjct: 215 TMTPN-CLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 313 PKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLR 372
            +  L+ + L G  +    P      + L +++ S + L       +  +  NL TL+L 
Sbjct: 272 LR--LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328

Query: 373 NNSLS 377
           +N L+
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 56/322 (17%), Positives = 108/322 (33%), Gaps = 46/322 (14%)

Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ- 277
           +++      HL+EL +  N +               +      +L ++  L L  N+ + 
Sbjct: 48  NQDEFASFPHLEELELNENIVS-------------AVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 278 IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN 337
           IP  +  F  LS L       N+I +  +          L+S+ +  +D+     +    
Sbjct: 95  IPLGV--FTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYISHRAFSG 150

Query: 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW-----HLDA 392
            + LE +     NL    P   L +   L  L LR+ +++      I+ +       L  
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA-----IRDYSFKRLYRLKV 204

Query: 393 LHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLAR 449
           L +S   +   +             +   NL  L ++     ++          L  L  
Sbjct: 205 LEISHWPYLDTMT---------PNCLYGLNLTSLSITHCNLTAVPYLAVRH---LVYLRF 252

Query: 450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGP 508
           L+L  N  +      L    RL+ + +    L   +       L+ L  + ++ N L   
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 509 IPLEFCQLNYLEILDLSENNIS 530
               F  +  LE L L  N ++
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 51/263 (19%), Positives = 86/263 (32%), Gaps = 46/263 (17%)

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580
            +         ++P     +  + + L KN +   L    F +   +  L+L+ N  S  
Sbjct: 15  AVLCHRKRFV-AVPE-GIPTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAV 71

Query: 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS--- 637
            P     L  LR L L +N L+        GL  L  +D+S N +   +     +     
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 638 ---LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYG 694
              + +N                         L       F             LN +  
Sbjct: 132 SLEVGDND------------------------LVYISHRAF-----------SGLNSLEQ 156

Query: 695 VDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
           + L    LT  IP +    L  +  L   H N+  +   SF  L +++ L++SH      
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 754 IPPQLVELNALVVFSVAHNNLSA 776
           + P  +    L   S+ H NL+A
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTA 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 5e-24
 Identities = 45/332 (13%), Positives = 92/332 (27%), Gaps = 78/332 (23%)

Query: 443 YLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMAS 502
           +      L+   +         LS     +  Y +D N + +   R  N ++        
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRW-HSAWRQANSNNPQIETRTG 65

Query: 503 NHLQG-PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTF 561
             L+     LE         L+L    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 562 FNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS 621
           F  S +  + +        +P  +++   L  L LA N L   +P  +  L +LR + + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 622 NNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEIS 681
                 ++P  L +T        + +                   L+             
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVN-------------------LQS------------ 187

Query: 682 FSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVE 741
                        + L    +   +P  I  L N+++L   ++ L+  +  +  +L ++E
Sbjct: 188 -------------LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232

Query: 742 SLDVSHNNLNGKIPPQLVELNALVVFSVAHNN 773
            LD+         PP       L    +   +
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 2e-23
 Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 54/334 (16%)

Query: 317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
            E++   GS     +   L         D +  +      N       N         +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRAL 68

Query: 377 SG-PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG 435
                           AL +         P +              +L+++ +    L  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAF---------RLSHLQHMTIDAAGLM- 117

Query: 436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGN---- 491
           +L         L  L L  N     +P S+++ +RL  L +        +P  L +    
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 492 -----LSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVH 546
                L +L  + +    ++  +P     L  L+ L +  + +S +L             
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGP----------- 223

Query: 547 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP 606
                           +   +  LDL   +   N P        L+ LIL + +    +P
Sbjct: 224 -------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 607 NQLCGLKQLRLIDLSNNNLFGQIPGCLDN-TSLH 639
             +  L QL  +DL       ++P  +    +  
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 56/305 (18%), Positives = 97/305 (31%), Gaps = 47/305 (15%)

Query: 330 TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWH 389
                  N ++ ++   +   LK           P    L LR+  L   F        H
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSH 105

Query: 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLAR 449
           L  + +        +P  +              LE L L+ N L   L +    L +L  
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQ---------QFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 450 LHLDANYFTGEIPKSLSNCS---------RLEGLYMSDNNLYGNIPARLGNLSSLNDIMM 500
           L + A     E+P+ L++            L+ L +    +  ++PA + NL +L  + +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGT 560
            ++ L   +      L  LE LDL       + P                          
Sbjct: 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP------------------------I 248

Query: 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDL 620
           F  R+ +  L L   S    +P  I RL +L  L L        +P+ +  L    +I +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 621 SNNNL 625
             +  
Sbjct: 309 PPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 46/356 (12%), Positives = 96/356 (26%), Gaps = 81/356 (22%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSR--LEGLYMSDN 479
             +    ++ +     + + N                      L + ++     L +   
Sbjct: 34  QWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSV 91

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            L    P +   LS L  + + +  L   +P    Q   LE L L+ N +  +LP+    
Sbjct: 92  PL-PQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPA---- 144

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP---------YWIERLIR 590
                               +  + + +  L +        +P            + L+ 
Sbjct: 145 --------------------SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP---GCLDN-TSLHNNGDNVG 646
           L+ L L    +   +P  +  L+ L+ + + N+ L   +      L     L   G    
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLS-CNKLTGE 705
            + P                                   G     +  + L  C+ L   
Sbjct: 243 RNYP--------------------PIF------------GG-RAPLKRLILKDCSNLL-T 268

Query: 706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761
           +P  I +LT +  L+         +P   + L     + V  +        + V  
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 47/359 (13%), Positives = 96/359 (26%), Gaps = 74/359 (20%)

Query: 264 TSIERLFLSYNQ-FQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSL 322
             + +    YN       S     N +  ++ +     +    +     T      ++ L
Sbjct: 30  DVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQP-GRVALEL 88

Query: 323 SGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT 382
               +   FP   +    L+ +    + L  E P+ + +    L TL L  N L      
Sbjct: 89  RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR----- 140

Query: 383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL--------- 433
                                +P  I              L  L +              
Sbjct: 141 --------------------ALPASIA---------SLNRLRELSIRACPELTELPEPLA 171

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
                 +   L  L  L L+       +P S++N   L+ L + ++ L   +   + +L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP 229

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLY 553
            L ++ +         P  F     L+ L L + +   +LP                   
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL------------------ 271

Query: 554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612
                      + +  LDL        +P  I +L     +++  +       ++    
Sbjct: 272 ------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 4e-15
 Identities = 50/364 (13%), Positives = 103/364 (28%), Gaps = 55/364 (15%)

Query: 174 NFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELH 233
           + +  E+L    S+        ++ +                         R  +     
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR----------WHSAWRQANSNNP- 58

Query: 234 MGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLK 292
                    +       L                 L L        P   +  F LS L+
Sbjct: 59  --------QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQ 107

Query: 293 VFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLK 352
             + +   +   P++         LE+++L+ + +    P  + + + L  +        
Sbjct: 108 HMTIDAAGLMELPDTMQQFA---GLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 353 GEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYF 412
            E P  L   + +     L N                L +L +     + ++P  I    
Sbjct: 164 TELPEPLASTDASGEHQGLVN----------------LQSLRLEWTGIR-SLPASIA--- 203

Query: 413 PSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLE 472
             +L     NL+ L +  + L   L    ++L KL  L L         P      + L+
Sbjct: 204 --NLQ----NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 473 GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGS 532
            L + D +    +P  +  L+ L  + +        +P    QL    I+ +   ++   
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQ 315

Query: 533 LPSC 536
           L   
Sbjct: 316 LDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 53/408 (12%), Positives = 104/408 (25%), Gaps = 111/408 (27%)

Query: 92  SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSS 151
                  Q +  +    N           R +  +  ++          +    L   + 
Sbjct: 27  PYHDVLSQWQRHYNADRNR-----WHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQ 80

Query: 152 --LRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209
                L L    L       +     ++L+ +T+D + L   +  ++  F  L+ L++  
Sbjct: 81  PGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERL 269
                 L      +  L  L+EL +        LP      L    +S     L +++ L
Sbjct: 137 NP----LRALPASIASLNRLRELSIRACPELTELP----EPLASTDASGEHQGLVNLQSL 188

Query: 270 FLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIH 328
            L +     +P S     NL  LK                             +  S + 
Sbjct: 189 RLEWTGIRSLPAS---IANLQNLKSLK--------------------------IRNSPLS 219

Query: 329 ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN-NSLSGPFQTPIQPH 387
                 +++   LE +D         +P         L  L+L++ ++L           
Sbjct: 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLL---------- 267

Query: 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKL 447
                           +PL+I              LE L L                  L
Sbjct: 268 ---------------TLPLDIH---------RLTQLEKLDLRGCV-------------NL 290

Query: 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL 495
           +RL           P  ++       + +  +        R     + 
Sbjct: 291 SRL-----------PSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 696 DLS-CNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           DL  C  L    PP  G    ++ L     +    +P+    L Q+E LD+       ++
Sbjct: 235 DLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 755 PPQLVELNALVVFSVAHNNLSAAERN 780
           P  + +L A  +  V  +  +  +++
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSN---------LNQVESLDVS 746
            L+ N L   +P  I  L  +R L+         +P   ++         L  ++SL + 
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 747 HNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
              +   +P  +  L  L    + ++ LSA
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 696 DLS-CNKLTGEIPPQIGK---------LTNIRALNFSHNNLTGVIPVSFSNLNQVESLDV 745
            +  C +LT E+P  +           L N+++L      +   +P S +NL  ++SL +
Sbjct: 156 SIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 746 SHNNLNGKIPPQLVELNALVVFSVAHNNL 774
            ++ L+  + P +  L  L    +     
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 2e-23
 Identities = 89/534 (16%), Positives = 166/534 (31%), Gaps = 111/534 (20%)

Query: 221 EGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IP 279
                +    E +   ++     P     Q    +S            L L+      +P
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87

Query: 280 FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339
                  +L  L        E+   P+S  S      L   + +   +    P       
Sbjct: 88  ELP---PHLESLVASCNSLTELPELPQSLKS------LLVDNNNLKALSDLPPL------ 132

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
            LE +  S++ L+ + P   L+N+  L  + + NNSL      P      L+ +    N 
Sbjct: 133 -LEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPS----LEFIAAGNNQ 184

Query: 400 FQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTG 459
            +  +P E+              L  +    NSL  +L         L  +    N    
Sbjct: 185 LE-ELP-ELQ---------NLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNNILE- 228

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519
                L N   L  +Y  +N L   +P    +L +LN   +  N+L   +P     L +L
Sbjct: 229 -ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFL 282

Query: 520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579
           ++ +   + +S   P+      +  ++ S N +             S+  L++S N    
Sbjct: 283 DVSENIFSGLSELPPN------LYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLI- 330

Query: 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL--FGQIPGCLDNTS 637
            +P       RL  LI + N+L  EVP     LKQL    +  N L  F  IP  +++  
Sbjct: 331 ELPALPP---RLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLREFPDIPESVEDLR 383

Query: 638 LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDL 697
           ++++   V                                              +  + +
Sbjct: 384 MNSHLAEVPEL----------------------------------------PQNLKQLHV 403

Query: 698 SCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
             N L  E P     + +   L  +   +      +    +++E     H++ +
Sbjct: 404 ETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.6 bits (241), Expect = 3e-21
 Identities = 79/437 (18%), Positives = 148/437 (33%), Gaps = 63/437 (14%)

Query: 349 SNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEI 408
            N+   F    L+++ NL+ + +   ++                 + + + ++ N P   
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVK-----------SKTEYYNAWSEWERNAPPGN 54

Query: 409 GVYFPSHL----AMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS 464
           G      +             L L+   L     S       L  L    N  T E+P+ 
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLS----SLPELPPHLESLVASCNSLT-ELPEL 109

Query: 465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL 524
             +   L     +   L    P     L  L    +++N L+  +P E    ++L+I+D+
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP----LLEYLG---VSNNQLEK-LP-ELQNSSFLKIIDV 160

Query: 525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 584
             N++   LP       ++ +    N L    +     N   +  +    NS    +P  
Sbjct: 161 DNNSLK-KLPDLPPS--LEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLK-KLP-- 211

Query: 585 IERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 644
            +  + L  ++  NN LE     +L  L  L  I   NN L   +P    +    N  DN
Sbjct: 212 -DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDN 267

Query: 645 VGSSAPTFNPNRRTTYFVG------PSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 698
             +  P    +                +      +  ++ EI           +  +++S
Sbjct: 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVS 325

Query: 699 CNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL 758
            NKL  E+P    +L     L  S N+L   +P    NL   + L V +N L  + P   
Sbjct: 326 NNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNL---KQLHVEYNPLR-EFPDIP 376

Query: 759 VELNALVVFSVAHNNLS 775
             +  L +    +++L+
Sbjct: 377 ESVEDLRM----NSHLA 389

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 9e-19
 Identities = 85/506 (16%), Positives = 169/506 (33%), Gaps = 88/506 (17%)

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLS 206
              + L+      + L    ++    +N  +  +    +S    +          +    
Sbjct: 8   VSNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 207 IQNGRVDGA--LGDDEEGLCRL----GHLQELHMGGNDLR------GTLPCLYLNQLTGN 254
           +++     A  L  +  GL  L     HL+ L    N L        +L  L ++     
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124

Query: 255 -ISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
            +S  P      +E L +S NQ +    L    N S LK+   + N +   P+   S   
Sbjct: 125 ALSDLP----PLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKLPDLPPS--- 174

Query: 314 KFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN 373
              LE ++   + +       L N   L  +   +++LK + P+       +L ++V  N
Sbjct: 175 ---LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP----LSLESIVAGN 224

Query: 374 NSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL 433
           N L    +    P   L  ++   N  +  +P                +LE L + +N L
Sbjct: 225 NILEELPELQNLPF--LTTIYADNNLLK-TLPDLPP------------SLEALNVRDNYL 269

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
                      + L  L +  N F+  + +   N   L  L  S N +  ++     +L 
Sbjct: 270 T----DLPELPQSLTFLDVSENIFS-GLSELPPN---LYYLNASSNEI-RSLCDLPPSLE 320

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLY 553
            LN   +++N L   +P    +L   E L  S N+++  +P       ++Q+H+  N L 
Sbjct: 321 ELN---VSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLR 370

Query: 554 ------GPLKYGTFFNR--------SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
                   ++     +          ++  L +  N      P   E +  LR   + + 
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLR---MNSE 426

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNL 625
            +            +L      +++ 
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 5e-18
 Identities = 98/514 (19%), Positives = 165/514 (32%), Gaps = 103/514 (20%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLE-------RLSGLSKLKLLNLGRNLFNNSIFSSLAGL 149
            +     +   +        G  E       RL      +   L   L N  + S     
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL--ELNNLGLSSLPELP 90

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209
             L +L    N L    ++ E   +  +L     +  +L             L+ L + N
Sbjct: 91  PHLESLVASCNSLT---ELPELPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSN 140

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERL 269
            +++  L +    L     L+ + +  N L+  LP L                  S+E +
Sbjct: 141 NQLE-KLPE----LQNSSFLKIIDVDNNSLK-KLPDL----------------PPSLEFI 178

Query: 270 FLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHA 329
               NQ +    L    NL  L     + N +   P+   S      LES+    + +  
Sbjct: 179 AAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLPLS------LESIVAGNNIL-- 227

Query: 330 TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWH 389
                L N   L  +   ++ LK   P+      P+L  L +R+N L+     P  P   
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVRDNYLT---DLPELPQ-S 278

Query: 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLAR 449
           L  L VS+N F   +                 NL YL  S N +   L         L  
Sbjct: 279 LTFLDVSENIFS-GLSELPP------------NLYYLNASSNEIR-SLCDL---PPSLEE 321

Query: 450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPI 509
           L++  N    E+P        LE L  S N+L   +P    NL  L+   +  N L+   
Sbjct: 322 LNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELPQNLKQLH---VEYNPLRE-F 372

Query: 510 PLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS--SI 567
           P     +      DL  N+    +P    +  ++Q+H+  N L         F     S+
Sbjct: 373 PDIPESVE-----DLRMNSHLAEVPELPQN--LKQLHVETNPL-------REFPDIPESV 418

Query: 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNL 601
             L ++         +  E   +L   +  +++ 
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 81/450 (18%), Positives = 139/450 (30%), Gaps = 104/450 (23%)

Query: 98  QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSL 157
             LE+L    N++    E         L  L + N      ++           L  L +
Sbjct: 91  PHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDLP-------PLLEYLGV 138

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLT-LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
             N+L       E L    N   L  +D  +  +  L       SL+ ++  N +++  L
Sbjct: 139 SNNQL-------EKLPELQNSSFLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLE-EL 188

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
            +    L  L  L  ++   N L+  LP L                  S+E +    N  
Sbjct: 189 PE----LQNLPFLTAIYADNNSLK-KLPDL----------------PLSLESIVAGNNIL 227

Query: 277 QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336
           +    L    NL  L     + N +   P+   S      LE++++  + +    P+   
Sbjct: 228 E---ELPELQNLPFLTTIYADNNLLKTLPDLPPS------LEALNVRDNYLT-DLPELPQ 277

Query: 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVS 396
           +   L++ +   S L    PN        L  L   +N +      P      L+ L+VS
Sbjct: 278 SLTFLDVSENIFSGLSELPPN--------LYYLNASSNEIRSLCDLPP----SLEELNVS 325

Query: 397 KNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY 456
            N     +P                 LE L+ S N     L       + L +LH++ N 
Sbjct: 326 NNKLI-ELPALPP------------RLERLIASFN----HLAEVPELPQNLKQLHVEYNP 368

Query: 457 FTGEIPKSLSN----------------CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM 500
              E P    +                   L+ L++  N L    P    ++  L    M
Sbjct: 369 LR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLR---M 423

Query: 501 ASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
            S  +  P        + LE      ++  
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 51/291 (17%), Positives = 102/291 (35%), Gaps = 65/291 (22%)

Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQ 544
           I  R  + + L + +  S++L   +P+E   +        + +    + P        +Q
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPP----GNGEQ 57

Query: 545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE 604
             ++ + L   L             L+L+    S ++P   E    L  L+ + N+L  E
Sbjct: 58  REMAVSRLRDCLD-------RQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-E 105

Query: 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGP 664
           +P     LK L + + +   L   +P  L+   + NN                       
Sbjct: 106 LPELPQSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQ---------------------- 142

Query: 665 SILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHN 724
             LEK   +             +  + +  +D+  N L  ++P     L     +   +N
Sbjct: 143 --LEKLPEL-------------QNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNN 183

Query: 725 NLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            L   +P    NL  + ++   +N+L  K+P   + L ++V     +N L 
Sbjct: 184 QLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 55/332 (16%), Positives = 109/332 (32%), Gaps = 57/332 (17%)

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLE 520
           I +   N +R +   ++D++L   + +   +  ++ ++ ++ N L      +      LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580
           +L+LS N +        S ST++ + L+ N +             SI TL  + N+ S  
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-R 113

Query: 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL----FGQIPGCLDN- 635
           +     R    + + LANN +            +++ +DL  N +    F ++    D  
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 636 --TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY 693
              +L  N                                      I          K+ 
Sbjct: 172 EHLNLQYN-------------------------------------FIYDVKGQVVFAKLK 194

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            +DLS NKL   + P+      +  ++  +N L  +I  +      +E  D+  N  +  
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 754 IPPQLVELNALVVFSVAHNNLSAAERNPGPYC 785
                       V +VA   +          C
Sbjct: 253 TLRDFF-SKNQRVQTVAKQTVKKLTGQNEEEC 283

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 46/330 (13%), Positives = 94/330 (28%), Gaps = 57/330 (17%)

Query: 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASN 503
             +     +  +     +     +   ++ L +S N L     A L   + L  + ++SN
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 563
            L   +      L+ L  LDL+ N +   L    S   I+ +H + N +   +       
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPS---IETLHAANNNI-SRVSCSRG-- 119

Query: 564 RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG-EVPNQLCGLKQLRLIDLSN 622
                 + L+ N  +           R++YL L  N ++             L  ++L  
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 623 NNLFGQIPGCLDNTSL------HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT 676
           N ++  + G +    L       N                         +          
Sbjct: 179 NFIY-DVKGQVVFAKLKTLDLSSNK------------------------LAFMGPEF--- 210

Query: 677 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLT-GVIPVSFS 735
                     +    +  + L  NKL   I   +    N+   +   N    G +   FS
Sbjct: 211 ----------QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 736 NLNQVESLDVSHNNLNGKIPPQLVELNALV 765
              +V+++             +   +  L 
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 28/303 (9%)

Query: 316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
           + +   ++ S +         +  +++ +D S + L  +     L     L  L L +N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNV 69

Query: 376 LSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG 435
           L       ++    L  L ++ N+ Q  +                 ++E L  + N++  
Sbjct: 70  LYET--LDLESLSTLRTLDLNNNYVQ-ELL-------------VGPSIETLHAANNNIS- 112

Query: 436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG-NIPARLGNLSS 494
                 +  +    ++L  N  T          SR++ L +  N +   N      +  +
Sbjct: 113 --RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNML-Y 553
           L  + +  N +   +         L+ LDLS N ++   P   S + +  + L  N L  
Sbjct: 171 LEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 554 GPLKYGTFFNRSSIVTLDLSYNSFS-GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612
                       ++   DL  N F  G +  +  +  R++ +             + C +
Sbjct: 229 IE---KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 613 KQL 615
             L
Sbjct: 286 PTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 56/288 (19%), Positives = 98/288 (34%), Gaps = 38/288 (13%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           Q  ASL      ++ L L  N ++          L+  +KL+LLNL  N+        L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            LS+LRTL L  N +       + L    ++E L    +  +IS + S +     K + +
Sbjct: 78  SLSTLRTLDLNNNYV-------QELLVGPSIETLHAANN--NISRV-SCSRGQGKKNIYL 127

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
            N ++       +        +Q L             L LN++     +       ++E
Sbjct: 128 ANNKITML---RDLDEGCRSRVQYLD------------LKLNEIDTVNFAELAASSDTLE 172

Query: 268 RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327
            L L YN       ++     +KLK      N++        S      +  +SL  + +
Sbjct: 173 HLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL 226

Query: 328 HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
                K L    +LE  D   +             N  + T+  +   
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 45/362 (12%), Positives = 97/362 (26%), Gaps = 91/362 (25%)

Query: 169 KETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGH 228
            E   N    +   +  SSL  ++     +  ++K L +                     
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG------------------- 43

Query: 229 LQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNL 288
                               N L+  IS++ L   T +E L LS N            +L
Sbjct: 44  --------------------NPLS-QISAADLAPFTKLELLNLSSNVLY---ETLDLESL 79

Query: 289 SKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSD 348
           S L+      N +               +E++  + ++I              + +  ++
Sbjct: 80  STLRTLDLNNNYVQELLVGP-------SIETLHAANNNISRVSCSRGQG---KKNIYLAN 129

Query: 349 SNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEI 408
           + +     +        +  L L+ N +                  V+      +     
Sbjct: 130 NKIT-MLRDLDEGCRSRVQYLDLKLNEID----------------TVNFAELAASSD--- 169

Query: 409 GVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNC 468
                         LE+L L  N ++      +    KL  L L +N     +     + 
Sbjct: 170 -------------TLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN 528
           + +  + + +N L   I   L    +L    +  N       L         +  +++  
Sbjct: 214 AGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQT 271

Query: 529 IS 530
           + 
Sbjct: 272 VK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 125 LSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLD 184
            ++ K+  +  +    ++ S      +++ L L  N L         L  FT LE L L 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLELLNL- 65

Query: 185 YSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244
            SS  +     + + ++L+ L + N  V        + L     ++ LH   N++   + 
Sbjct: 66  -SSNVLYETLDLESLSTLRTLDLNNNYV--------QELLVGPSIETLHAANNNIS-RVS 115

Query: 245 C--------LYL--NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVF 294
           C        +YL  N++T  +        + ++ L L  N+       E   +   L+  
Sbjct: 116 CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 295 SGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGE 354
           + ++N IY             +L+++ LS + + A       +   +  +   ++ L   
Sbjct: 175 NLQYNFIYDVKGQVVFA----KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 355 FPNWLLKNNPNLSTLVLRNNSLS 377
                L+ + NL    LR N   
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFH 250

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDAN--YFTGEIPKSLSNCSRLEGLYM 476
           +   L L  N   SL   +F K   L +L +L L +N   F G   +S    + L+ L +
Sbjct: 29  SATRLELESNKLQSLPHGVFDK---LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLE-FCQLNYLEILDLSENNISGSLPS 535
           S N +   + +    L  L  +    ++L+       F  L  L  LD+S  +      +
Sbjct: 86  SFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 536 --CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRY 593
              +  S+++ + ++ N          F    ++  LDLS        P     L  L+ 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 594 LILANNNLEGEVPNQLCGLKQLRLIDLSNNNL-------FGQIPGCLDNTSLHNN 641
           L +++NN           L  L+++D S N++           P  L   +L  N
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 21/241 (8%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            L   +     QL  L L SN ++            G + LK L+L  N    ++ S+  
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSFNGV-ITMSSNFL 98

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
           GL  L  L   ++ LK  +       +  NL  L + ++   ++        +SL+ L +
Sbjct: 99  GLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
                      D      L +L  L +    L               +S +    L+S++
Sbjct: 158 AGNSFQENFLPD--IFTELRNLTFLDLSQCQLE-------------QLSPTAFNSLSSLQ 202

Query: 268 RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327
            L +S+N F       P+  L+ L+V     N I    +      P   L  ++L+ +D 
Sbjct: 203 VLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNLTQNDF 260

Query: 328 H 328
            
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 48/298 (16%), Positives = 98/298 (32%), Gaps = 63/298 (21%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL--QGPIPLEFCQLN 517
            +P  +   S    L +  N L          L+ L  + ++SN L  +G          
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 518 YLEILDLSENNISGSLPSCSSHST-IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 576
            L+ LDLS N +  ++ S       ++ +    + L    ++  F +  +++ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 577 FSGNIPYWIERLIRLRYLILANNN-LEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
                      L  L  L +A N+  E  +P+    L+ L  +DLS   L          
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---------- 187

Query: 636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV 695
             L             FN                                   L+ +  +
Sbjct: 188 EQLSPT---------AFN----------------------------------SLSSLQVL 204

Query: 696 DLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNL-NQVESLDVSHNNLN 751
           ++S N     +       L +++ L++S N++         +  + +  L+++ N+  
Sbjct: 205 NMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 10/211 (4%)

Query: 422 NLEYLVLSENSLHGQLFSKK--NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
            L  L LS N L  +    +       L  L L  N     +  +     +LE L    +
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111

Query: 480 NLYGNIPAR--LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS 537
           NL   +       +L +L  + ++  H +      F  L+ LE+L ++ N+   +     
Sbjct: 112 NL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 538 SH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
                 +  + LS+  L   L    F + SS+  L++S+N+F     +  + L  L+ L 
Sbjct: 171 FTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 596 LANNNLEGEVPNQLCGL-KQLRLIDLSNNNL 625
            + N++      +L      L  ++L+ N+ 
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 50/284 (17%), Positives = 101/284 (35%), Gaps = 52/284 (18%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA--GLSSLRT 154
                 L L+SN +   + +G       L++L  L+L  N  +     S +  G +SL+ 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGV---FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 155 LSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDG 214
           L L +N +     +         LE L   +S  ++  +   + F SL+           
Sbjct: 83  LDLSFNGVI---TMSSNFLGLEQLEHLDFQHS--NLKQMSEFSVFLSLRN---------- 127

Query: 215 ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYN 274
                         L  L +     R                +     L+S+E L ++ N
Sbjct: 128 --------------LIYLDISHTHTR-------------VAFNGIFNGLSSLEVLKMAGN 160

Query: 275 QFQIPFSLEPFFNLSKLKVFSGEFNEI-YVEPESSHSTTPKFQLESVSLSGSDIHATFPK 333
            FQ  F  + F  L  L        ++  + P + +S +    L+ +++S ++  +    
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---SLQVLNMSHNNFFSLDTF 217

Query: 334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
                + L+++D+S +++       L     +L+ L L  N  +
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 49/270 (18%), Positives = 97/270 (35%), Gaps = 51/270 (18%)

Query: 519 LEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLY-GPLKYGTFFNRSSIVTLDLSYNS 576
              L+L  N +           + + ++ LS N L        + F  +S+  LDLS+N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 577 FSGNIPYWIERLIRLRYLILANNNLEGEVPNQ--LCGLKQLRLIDLSNNNLFGQIPGCLD 634
               +      L +L +L   ++NL+ ++        L+ L  +D+S+ +      G  +
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 635 NTS------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKP 688
             S      +  N          F                                    
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIF----------------------------------TE 173

Query: 689 LNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
           L  +  +DLS  +L  ++ P     L++++ LN SHNN   +    +  LN ++ LD S 
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 748 NNLNGKIPPQLVE--LNALVVFSVAHNNLS 775
           N++      Q ++   ++L   ++  N+ +
Sbjct: 233 NHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 56/255 (21%), Positives = 87/255 (34%), Gaps = 33/255 (12%)

Query: 264 TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
           +S  RL L  N+ Q   SL    F  L++L   S   N +  +   S S      L+ + 
Sbjct: 28  SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQ 381
           LS + +  T          LE +DF  SNLK      +  +  NL  L + +        
Sbjct: 85  LSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--- 140

Query: 382 TPIQPHW-----HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SL 433
                        L+ L ++ N FQ N            +     NL +L LS+     L
Sbjct: 141 --AFNGIFNGLSSLEVLKMAGNSFQENFL--------PDIFTELRNLTFLDLSQCQLEQL 190

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL--GN 491
               F+    L  L  L++  N F           + L+ L  S N++      +     
Sbjct: 191 SPTAFNS---LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHF 246

Query: 492 LSSLNDIMMASNHLQ 506
            SSL  + +  N   
Sbjct: 247 PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 24/223 (10%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE--GEVPNQLCGLKQLRLIDLSN 622
           SS   L+L  N          ++L +L  L L++N L   G       G   L+ +DLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 623 NNLFGQIPGCLDNTS------LHNNGDNVGSSAPTFNPNRRTTY-FVGPSILEKEESIMF 675
           N +   +                ++     S    F   R   Y  +  +      + +F
Sbjct: 88  NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 676 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSF 734
                        L+ +  + ++ N       P I  +L N+  L+ S   L  + P +F
Sbjct: 147 -----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 735 SNLNQVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLSA 776
           ++L+ ++ L++SHNN    +       LN+L V   + N++  
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 53/219 (24%)

Query: 569 TLDLSYNSFS---GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
            +  +    +     IP           L L +N L+         L QL  + LS+N L
Sbjct: 11  EIRCNSKGLTSVPTGIPSS------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 626 FGQIPGCLDNTSLHN------NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE 679
             +      +    +      + + V + +  F                           
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--------------------------- 97

Query: 680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ--IGKLTNIRALNFSHNNLTGVIPVSFSNL 737
                    L ++  +D   + L  ++        L N+  L+ SH +        F+ L
Sbjct: 98  -------LGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 738 NQVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLS 775
           + +E L ++ N+      P    EL  L    ++   L 
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 69/340 (20%), Positives = 127/340 (37%), Gaps = 71/340 (20%)

Query: 440 KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499
           +       A L++  +  T  +P  L   + +  L + DNNL  ++PA    L +L    
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNL-TSLPALPPELRTLE--- 87

Query: 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYG 559
           ++ N L   +P+    L  L I      ++            + ++ +  N L       
Sbjct: 88  VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQL------- 133

Query: 560 TFFNRS--SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL 617
           T        +  L +S N  + ++P     L +L      NN L   +P    GL++L  
Sbjct: 134 TSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL-- 186

Query: 618 IDLSNNNLFGQIP---GCLDNTSLHNNGDNVGSSAPT------FNPNRRTTYFVGPSILE 668
             +S+N L   +P     L     +NN      + P+       + NR T+  V PS L+
Sbjct: 187 -SVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244

Query: 669 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG 728
           +                         + +S N+LT  +P     L +   L+   N LT 
Sbjct: 245 E-------------------------LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT- 274

Query: 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS 768
            +P S  +L+   ++++  N L+ +    L E+ +   +S
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 57/311 (18%), Positives = 98/311 (31%), Gaps = 56/311 (18%)

Query: 316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
               +++  S +  T P  L     +  +   D+NL    P       P L TL +  N 
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALP----PELRTLEVSGNQ 92

Query: 376 LSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG 435
           L+            L            ++P                 L  L +  N    
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLT----HLPALPS------------GLCKLWIFGN---- 131

Query: 436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL 495
           QL S       L  L +  N     +P   S    L  L+  +N L  ++P     L  L
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQL-TSLPMLPSGLQEL 186

Query: 496 NDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGP 555
           +   ++ N L   +P    +L  L   +    ++            ++++ +S N L   
Sbjct: 187 S---VSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSG------LKELIVSGNRL--- 233

Query: 556 LKYGTFFNR-SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQ 614
               +     S +  L +S N  + ++P     L     L +  N L   +P  L  L  
Sbjct: 234 ---TSLPVLPSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSS 285

Query: 615 LRLIDLSNNNL 625
              ++L  N L
Sbjct: 286 ETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 70/366 (19%), Positives = 121/366 (33%), Gaps = 91/366 (24%)

Query: 389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLA 448
               L+V ++     +P  +             ++  LV+ +N     L S      +L 
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPA-----------HITTLVIPDN----NLTSLPALPPELR 84

Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP 508
            L +  N  T  +P        L        +L    PA    L  L    +  N L   
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS- 135

Query: 509 IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR--SS 566
           +P+    L   + L +S+N ++ SLP+  S   + ++    N L       T      S 
Sbjct: 136 LPVLPPGL---QELSVSDNQLA-SLPALPSE--LCKLWAYNNQL-------TSLPMLPSG 182

Query: 567 IVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF 626
           +  L +S N  + ++P     L +L      NN L   +P    GLK+L    +S N L 
Sbjct: 183 LQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLKEL---IVSGNRL- 233

Query: 627 GQIPGCLDN-TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685
             +P        L  +G            NR T+  + PS L                  
Sbjct: 234 TSLPVLPSELKELMVSG------------NRLTSLPMLPSGLLS---------------- 265

Query: 686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDV 745
                    + +  N+LT  +P  +  L++   +N   N L+     +   L ++ S   
Sbjct: 266 ---------LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPG 312

Query: 746 SHNNLN 751
               + 
Sbjct: 313 YSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 5e-15
 Identities = 70/352 (19%), Positives = 114/352 (32%), Gaps = 60/352 (17%)

Query: 224 CRLGHLQELHMGGNDLRGTLPCLYLNQLTG-NISSSPLIHL----TSIERLFLSYNQFQ- 277
           C       L++G + L  TLP      +T   I  + L  L      +  L +S NQ   
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS 95

Query: 278 IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN 337
           +P        L +L +FS     +   P           L  + + G+ +  + P     
Sbjct: 96  LPVLPP---GLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLT-SLPVLPPG 142

Query: 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSK 397
             +L +      N     P         L  L   NN L+     P+ P   L  L VS 
Sbjct: 143 LQELSV----SDNQLASLPALP----SELCKLWAYNNQLT---SLPMLPS-GLQELSVSD 190

Query: 398 NFFQGNIPLEIG------------VYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR 445
           N    ++P                   P+  +     L+ L++S N    +L S      
Sbjct: 191 NQLA-SLPTLPSELYKLWAYNNRLTSLPALPS----GLKELIVSGN----RLTSLPVLPS 241

Query: 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL 505
           +L  L +  N  T  +P   S    L  L +  N L   +P  L +LSS   + +  N L
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPL 296

Query: 506 QGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLK 557
                    ++        S   I   +   S+    + +HL+      P +
Sbjct: 297 SERTLQALREITSAP--GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 52/269 (19%), Positives = 87/269 (32%), Gaps = 70/269 (26%)

Query: 511 LEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR--SSIV 568
           +  C  N   +L++ E+ ++ +LP C   + I  + +  N L       T        + 
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNL-------TSLPALPPELR 84

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628
           TL++S N  + ++P     L+ L        +L    P    GL +L +      N    
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLWI----FGNQLTS 135

Query: 629 IPGCLDN-TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGK 687
           +P        L              + N+  +    PS L K                  
Sbjct: 136 LPVLPPGLQELS------------VSDNQLASLPALPSELCK------------------ 165

Query: 688 PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
                  +    N+LT  +P     L     L+ S N L   +P   S L     L   +
Sbjct: 166 -------LWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSEL---YKLWAYN 210

Query: 748 NNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           N L   +P     L  L    V+ N L++
Sbjct: 211 NRLT-SLPALPSGLKEL---IVSGNRLTS 235

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 98/322 (30%)

Query: 459 GEIPKSLSNC--SRLEGLYMSDNNLYGNIPARLG-NLSSLNDIMMASNHLQGPIPLEFCQ 515
             + + +  C  +    L + ++ L   +P  L  ++++L    +  N+L   +P    +
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLPAHITTLV---IPDNNLTS-LPALPPE 82

Query: 516 LNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
           L     L++S N ++ SLP                                +        
Sbjct: 83  L---RTLEVSGNQLT-SLPV------------------------LPPGLLELSIFSNPLT 114

Query: 576 SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
                          L  L +  N L   +P    GL++L    +S+N L   +P     
Sbjct: 115 HLPALPS-------GLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQL-ASLPALPSE 162

Query: 636 -TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYG 694
              L                N+ T+  + PS L++                         
Sbjct: 163 LCKLWAYN------------NQLTSLPMLPSGLQE------------------------- 185

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           + +S N+L   +P    +L     L   +N LT  +P   S L   + L VS N L   +
Sbjct: 186 LSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGL---KELIVSGNRLTS-L 236

Query: 755 PPQLVELNALVVFSVAHNNLSA 776
           P    EL  L    V+ N L++
Sbjct: 237 PVLPSELKEL---MVSGNRLTS 255

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 3e-10
 Identities = 56/409 (13%), Positives = 111/409 (27%), Gaps = 99/409 (24%)

Query: 99  QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLG 158
               L++  + +    +       + ++ L        + +N++ S  A    LRTL + 
Sbjct: 41  GNAVLNVGESGLTTLPDCLP----AHITTL-------VIPDNNLTSLPALPPELRTLEVS 89

Query: 159 YNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGD 218
            N+L     +         L   +   + L           + L +L I   ++      
Sbjct: 90  GNQLT---SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQL------ 133

Query: 219 DEEGLCRLGHLQELHMGGNDLR------GTLPCLYL--NQLTGNISSSPLIHLTSIERLF 270
                     LQEL +  N L         L  L+   NQLT ++        + ++ L 
Sbjct: 134 -TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPML----PSGLQELS 187

Query: 271 LSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHA 329
           +S NQ   +P        L KL  ++     +   P           L+ + +SG+ +  
Sbjct: 188 VSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSG---------LKELIVSGNRL-T 234

Query: 330 TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWH 389
           + P        L+ +  S + L    P         L +L +  N L+            
Sbjct: 235 SLPVLPSE---LKELMVSGNRLT-SLPMLP----SGLLSLSVYRNQLT------------ 274

Query: 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLAR 449
                         +P  +             +   + L  N L  +       +     
Sbjct: 275 -------------RLPESLI---------HLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDI 498
                  F      +      L     + + L              +  
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLA--AADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 6e-09
 Identities = 60/320 (18%), Positives = 101/320 (31%), Gaps = 62/320 (19%)

Query: 97  FQQLETLHLDSNNIAGF-VENGGLERLSGL-----------SKLKLLNLGRN-------- 136
             +L TL +  N +    V   GL  LS             S L  L +  N        
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL 139

Query: 137 --------LFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETL-DNFTNLEDLTLDYSS 187
                   + +N + S  A  S L  L    N+L        +L    + L++L++  + 
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQL-------TSLPMLPSGLQELSVSDNQ 192

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
           L  S+    +    L   + +   +                L+EL + GN L  +LP L 
Sbjct: 193 L-ASLPTLPSELYKLWAYNNRLTSLPAL----------PSGLKELIVSGNRLT-SLPVL- 239

Query: 248 LNQLTG-NISSSPLIHL----TSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEI 301
            ++L    +S + L  L    + +  L +  NQ   +P SL    +LS     + E N +
Sbjct: 240 PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESL---IHLSSETTVNLEGNPL 296

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNW--- 358
                 +          S  +   D+             L   D+     +GE       
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

Query: 359 -LLKNNPNLSTLVLRNNSLS 377
            +     N     L  + LS
Sbjct: 357 HMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 29/162 (17%)

Query: 92  SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSS 151
           SL      L+ L +  N +A           S L KL          NN + S  A  S 
Sbjct: 175 SLPMLPSGLQELSVSDNQLASLPTL-----PSELYKLWAY-------NNRLTSLPALPSG 222

Query: 152 LRTLSLGYNRLKGSIDVKETLDNF-TNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNG 210
           L+ L +  NRL        +L    + L++L +  + L  S+       + L  LS+   
Sbjct: 223 LKELIVSGNRL-------TSLPVLPSELKELMVSGNRL-TSLPMLP---SGLLSLSVYRN 271

Query: 211 RVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
           +    L    E L  L     +++ GN L        L ++T
Sbjct: 272 Q----LTRLPESLIHLSSETTVNLEGNPLS-ERTLQALREIT 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 60/366 (16%), Positives = 131/366 (35%), Gaps = 71/366 (19%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
           N + +    +    L   L       R++  L+L+          + +    ++ LYM  
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDS---FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 479 NNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC- 536
           N +   +P     N+  L  +++  N L       F     L  L +S NN+   +    
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 537 -SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
             + +++Q + LS N L   +         S+   ++SYN  S      +   I +  L 
Sbjct: 161 FQATTSLQNLQLSSNRL-THVDLSLI---PSLFHANVSYNLLST-----LAIPIAVEELD 211

Query: 596 LANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL------HNNGDNVGSSA 649
            ++N++   V   +    +L ++ L +NNL       L+   L      +N  + +    
Sbjct: 212 ASHNSIN-VVRGPV--NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ 709
                      FV                          + ++  + +S N+L   +   
Sbjct: 268 -----------FVK-------------------------MQRLERLYISNNRLV-ALNLY 290

Query: 710 IGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV 769
              +  ++ L+ SHN+L   +  +    +++E+L + HN++   +       + L   ++
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTL 346

Query: 770 AHNNLS 775
           +HN+  
Sbjct: 347 SHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 57/337 (16%), Positives = 116/337 (34%), Gaps = 26/337 (7%)

Query: 442 NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501
            Y      +H+D               +  + +   ++ +     A L +   +  + + 
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYG 559
              ++      F   + ++ L +  N I   LP     +   +  + L +N L   L  G
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRG 135

Query: 560 TFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID 619
            F N   + TL +S N+         +    L+ L L++N L   V   L  +  L   +
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHAN 192

Query: 620 LSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE 679
           +S N L   +   +    L  + +++       N           ++          T  
Sbjct: 193 VSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL----------TDT 241

Query: 680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLN 738
                       +  VDLS N+L  +I      K+  +  L  S+N L   + +    + 
Sbjct: 242 AWLL----NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 739 QVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
            ++ LD+SHN+L   +     + + L    + HN++ 
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 66/404 (16%), Positives = 133/404 (32%), Gaps = 76/404 (18%)

Query: 225 RLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP 284
            L + + +    + +R              + ++ L     +E L L+  Q +    ++ 
Sbjct: 43  TLNNQKIVTFKNSTMR-------------KLPAALLDSFRQVELLNLNDLQIE---EIDT 86

Query: 285 --FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLE 342
             F     ++     FN I   P       P   L  + L  +D+ +      +N   L 
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL--LTVLVLERNDLSSLPRGIFHNTPKLT 144

Query: 343 LVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSKNFFQ 401
            +  S++NL+    +   +   +L  L L +N L+             L   +VS N   
Sbjct: 145 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLS 199

Query: 402 GNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEI 461
             + + I              +E L  S NS++     +     +L  L L  N  T + 
Sbjct: 200 -TLAIPI-------------AVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DT 241

Query: 462 PKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEI 521
              L N   L  + +S N L   +      +  L  + +++N L   + L    +  L++
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299

Query: 522 LDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581
           LDLS N++   +                                 +  L L +NS    +
Sbjct: 300 LDLSHNHLL-HVER------------------------NQPQFDRLENLYLDHNSIV-TL 333

Query: 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
              +     L+ L L++N+ +      L   + +    + + + 
Sbjct: 334 K--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 5e-20
 Identities = 70/425 (16%), Positives = 138/425 (32%), Gaps = 101/425 (23%)

Query: 338 QHDLELVDFS-DSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVS 396
           Q+D    D   D   +  +  +      N   +  +N+++                  + 
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR----------------KLP 61

Query: 397 KNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLD 453
                                     +E L L++     +    F+       + +L++ 
Sbjct: 62  AALLDSFR-----------------QVELLNLNDLQIEEIDTYAFAY---AHTIQKLYMG 101

Query: 454 ANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL-GNLSSLNDIMMASNHLQGPIPLE 512
            N      P    N   L  L +  N+L  ++P  +  N   L  + M++N+L+      
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 513 FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572
           F     L+ L LS N ++  +   S   ++   ++S N+L       T     ++  LD 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLL------STLAIPIAVEELDA 212

Query: 573 SYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGC 632
           S+NS +  +       + L  L L +NNL       L     L  +DLS N L   +   
Sbjct: 213 SHNSIN-VVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 633 LDNTS------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKG 686
                      + NN                                    + ++ +  G
Sbjct: 268 FVKMQRLERLYISNN------------------------------------RLVALNLYG 291

Query: 687 KPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
           +P+  +  +DLS N L   +     +   +  L   HN++  +   +   L   ++L +S
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL---KNLTLS 347

Query: 747 HNNLN 751
           HN+ +
Sbjct: 348 HNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.6 bits (228), Expect = 8e-20
 Identities = 62/333 (18%), Positives = 124/333 (37%), Gaps = 45/333 (13%)

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLE 520
           I  +L        +++               L++   +   ++ ++            +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 521 ILDLSENNISGSLPSCS--SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
           +L+L++  I   + + +     TIQ++++  N +   L    F N   +  L L  N  S
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

Query: 579 GNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL----FGQIPGCL 633
            ++P  I     +L  L ++NNNLE    +       L+ + LS+N L       IP  L
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-L 188

Query: 634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY------KGK 687
            + ++  N                 +    P  +E          E+  S+      +G 
Sbjct: 189 FHANVSYN---------------LLSTLAIPIAVE----------ELDASHNSINVVRGP 223

Query: 688 PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
              ++  + L  N LT      +     +  ++ S+N L  ++   F  + ++E L +S+
Sbjct: 224 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 748 NNLNGKIPPQLVELNALVVFSVAHNNLSAAERN 780
           N L   +      +  L V  ++HN+L   ERN
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.3 bits (227), Expect = 9e-20
 Identities = 64/383 (16%), Positives = 136/383 (35%), Gaps = 60/383 (15%)

Query: 246 LYLNQLTGNISSSP-LIHLTSIERLFLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYV 303
           ++++  T ++      I L + + +    +   ++P +L    +  ++++ +    +I  
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVELLNLNDLQIEE 83

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
               + +      ++ + +  + I    P    N   L ++    ++L    P  +  N 
Sbjct: 84  IDTYAFAYAH--TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF-N 422
           P L+TL + NN+L        Q    L  L +S N               +H+ +    +
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------------THVDLSLIPS 187

Query: 423 LEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY 482
           L +  +S N L     S       +  L    N     +   +     L  L +  NNL 
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL- 238

Query: 483 GNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTI 542
            +    L N   L ++ ++ N L+  +   F ++  LE L +S N +  +L         
Sbjct: 239 TDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN-------- 288

Query: 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE 602
                                  ++  LDLS+N    ++     +  RL  L L +N++ 
Sbjct: 289 ----------------LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 603 GEVPNQLCGLKQLRLIDLSNNNL 625
             +         L+ + LS+N+ 
Sbjct: 332 -TLKLST--HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 9e-18
 Identities = 56/333 (16%), Positives = 115/333 (34%), Gaps = 38/333 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           +++         ++ L++  N I     +        +  L +L L RN  ++       
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
               L TLS+  N L+  I+  +T    T+L++L L  + L   +   ++   SL   ++
Sbjct: 139 NTPKLTTLSMSNNNLE-RIE-DDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANV 193

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG-------TLPCLYL--NQLTGNISSS 258
               +          L     ++EL    N +          L  L L  N LT    ++
Sbjct: 194 SYNLL--------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT---DTA 242

Query: 259 PLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLE 318
            L++   +  + LSYN+ +      PF  + +L+      N +               L+
Sbjct: 243 WLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIP---TLK 298

Query: 319 SVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG 378
            + LS + +     +       LE +    +++        L  +  L  L L +N    
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDC 353

Query: 379 PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVY 411
                +  +    A+  +    + +  LE G+ 
Sbjct: 354 NSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 386

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 68/412 (16%), Positives = 121/412 (29%), Gaps = 103/412 (25%)

Query: 96  PFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTL 155
                + +   ++ +           L    +++LLNL           + A   +++ L
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 98

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA 215
            +G+N ++  +       N   L  L L+ + L           +SL R    N      
Sbjct: 99  YMGFNAIR-YLP-PHVFQNVPLLTVLVLERNDL-----------SSLPRGIFHN------ 139

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQ 275
                        L  L M  N+L               I        TS++ L LS N+
Sbjct: 140 ----------TPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNR 176

Query: 276 FQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKF 334
              +  SL    +L    V     + + +             +E +  S + I+      
Sbjct: 177 LTHVDLSL--IPSLFHANVSYNLLSTLAIPI----------AVEELDASHNSINVVRGPV 224

Query: 335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH 394
                 L+L      N   +     L N P L  + L  N L                  
Sbjct: 225 NVELTILKL----QHNNLTDTAW--LLNYPGLVEVDLSYNELE----------------K 262

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA 454
           +  + F                      LE L +S N L   L      +  L  L L  
Sbjct: 263 IMYHPFV-----------------KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304

Query: 455 NYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ 506
           N+    + ++     RLE LY+  N++   +   L    +L ++ ++ N   
Sbjct: 305 NHLL-HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWD 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 65/312 (20%), Positives = 116/312 (37%), Gaps = 30/312 (9%)

Query: 317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
              V +        F       ++ ++V F +S ++ + P  LL +   +  L L +  +
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 87

Query: 377 SGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SL 433
                        +  L++  N  +         Y P H+      L  LVL  N   SL
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR---------YLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
              +F       KL  L +  N        +    + L+ L +S N L  ++   L  + 
Sbjct: 139 PRGIFHN---TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIP 192

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLY 553
           SL    ++ N L             +E LD S N+I+  +    +   +  + L  N L 
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE-LTILKLQHNNLT 245

Query: 554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLK 613
                    N   +V +DLSYN     + +   ++ RL  L ++NN L   +      + 
Sbjct: 246 DT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 614 QLRLIDLSNNNL 625
            L+++DLS+N+L
Sbjct: 302 TLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 8e-19
 Identities = 62/334 (18%), Positives = 124/334 (37%), Gaps = 45/334 (13%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519
            I  +L        +++               L++   +   ++ ++            +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 520 EILDLSENNISGSLPSCS--SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
           E+L+L++  I   + + +     TIQ++++  N +   L    F N   +  L L  N  
Sbjct: 78  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL 135

Query: 578 SGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL----FGQIPGC 632
           S ++P  I     +L  L ++NNNLE    +       L+ + LS+N L       IP  
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS- 193

Query: 633 LDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY------KG 686
           L + ++  N                 +    P  +E          E+  S+      +G
Sbjct: 194 LFHANVSYN---------------LLSTLAIPIAVE----------ELDASHNSINVVRG 228

Query: 687 KPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
               ++  + L  N LT      +     +  ++ S+N L  ++   F  + ++E L +S
Sbjct: 229 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 747 HNNLNGKIPPQLVELNALVVFSVAHNNLSAAERN 780
           +N L   +      +  L V  ++HN+L   ERN
Sbjct: 287 NNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 68/402 (16%), Positives = 136/402 (33%), Gaps = 76/402 (18%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
           L+ +     + +   +    F        +   +    +  +           P+ L   
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR---------KLPAALLDS 73

Query: 420 CFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYM 476
              +E L L++     +    F+       + +L++  N      P    N   L  L +
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAY---AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 477 SDNNLYGNIPARL-GNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS 535
             N+L  ++P  +  N   L  + M++N+L+      F     L+ L LS N ++  +  
Sbjct: 131 ERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL 188

Query: 536 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
            S   ++   ++S N+L       T     ++  LD S+NS +  +       + L  L 
Sbjct: 189 -SLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN-VVR--GPVNVELTILK 238

Query: 596 LANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNNGDNVGSSA 649
           L +NNL       L     L  +DLS N L   +              + NN        
Sbjct: 239 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-------- 288

Query: 650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ 709
                                  ++      + +  G+P+  +  +DLS N L   +   
Sbjct: 289 ----------------------RLV------ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 710 IGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
             +   +  L   HN++  +   +   L   ++L +SHN+ +
Sbjct: 320 QPQFDRLENLYLDHNSIVTLKLSTHHTL---KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 75/430 (17%), Positives = 139/430 (32%), Gaps = 102/430 (23%)

Query: 125 LSKLKLLNLGRNLFNNSIFSSLA--GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
                  ++  ++    ++       L++ + ++   + ++  +     LD+F  +E L 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP-AALLDSFRQVELLN 81

Query: 183 LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT 242
           L  + L I  +                         D         +Q+L+MG N +R  
Sbjct: 82  L--NDLQIEEI-------------------------DTYAFAYAHTIQKLYMGFNAIR-- 112

Query: 243 LPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI- 301
                       +      ++  +  L L  N          F N  KL   S   N + 
Sbjct: 113 -----------YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE 160

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
            +E ++  +TT    L+++ LS             N+    L     S +          
Sbjct: 161 RIEDDTFQATT---SLQNLQLS------------SNR----LTHVDLSLI---------- 191

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
             P+L    +  N L     + +     ++ L  S N     +   +             
Sbjct: 192 --PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV-----------NV 232

Query: 422 NLEYLVLSENSL-HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN 480
            L  L L  N+L              L  + L  N     +        RLE LY+S+N 
Sbjct: 233 ELTILKLQHNNLTDTAWLLN---YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHS 540
           L   +      + +L  + ++ NHL   +     Q + LE L L  N+I  +L   S+H 
Sbjct: 290 L-VALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKL-STHH 345

Query: 541 TIQQVHLSKN 550
           T++ + LS N
Sbjct: 346 TLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 68/434 (15%), Positives = 127/434 (29%), Gaps = 104/434 (23%)

Query: 96  PFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTL 155
                + +   ++ +           L    +++LLNL           + A   +++ L
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA 215
            +G+N ++  +       N   L  L L+ + L           +SL             
Sbjct: 105 YMGFNAIR-YLP-PHVFQNVPLLTVLVLERNDL-----------SSL------------- 138

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQ 275
                        L  L M  N+L               I        TS++ L LS N+
Sbjct: 139 ---PRGIFHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNR 182

Query: 276 F-QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKF 334
              +  SL     +  L   +  +N +        +      +E +  S + I+      
Sbjct: 183 LTHVDLSL-----IPSLFHANVSYNLL-------STLAIPIAVEELDASHNSINVVRGPV 230

Query: 335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH 394
                 L+L      N   +     L N P L  + L  N L                  
Sbjct: 231 NVELTILKL----QHNNLTDTAW--LLNYPGLVEVDLSYNELE----------------K 268

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA 454
           +  + F                      LE L +S N L   L      +  L  L L  
Sbjct: 269 IMYHPFV-----------------KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310

Query: 455 NYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG-PIPLEF 513
           N+    + ++     RLE LY+  N++   +   L    +L ++ ++ N      +   F
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRALF 366

Query: 514 CQLNYLEILDLSEN 527
             +    + D  ++
Sbjct: 367 RNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 74/441 (16%), Positives = 150/441 (34%), Gaps = 54/441 (12%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAG-----FVENGGLERL---------------SGLSK 127
           +L A+LL  F+Q+E L+L+   I       F     +++L                 +  
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSS 187
           L +L L RN  ++           L TLS+  N L+  I+  +T    T+L++L L  + 
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIE-DDTFQATTSLQNLQLSSNR 182

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR----GTL 243
           L   +   ++   SL   ++    +          L     ++EL    N +        
Sbjct: 183 LT-HV--DLSLIPSLFHANVSYNLL--------STLAIPIAVEELDASHNSINVVRGPVN 231

Query: 244 PCLYLNQLTGN--ISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301
             L + +L  N    ++ L++   +  + LSYN+ +      PF  + +L+      N +
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL 290

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
                          L+ + LS + +     +       LE +    +++        L 
Sbjct: 291 VALNLYGQPIP---TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK---LS 342

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGC- 420
            +  L  L L +N         +  +    A+  +    + +  LE G+           
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402

Query: 421 FNLEYLVLSENS-LHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEG----LY 475
             L+Y+ L+       +   + +    +  +   ++Y T +    L    +LE     L 
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

Query: 476 MSDNNLYGNIPARLGNLSSLN 496
                L      +   L  L+
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLH 483

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 50/368 (13%), Positives = 108/368 (29%), Gaps = 44/368 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           ++          L+ L L SN +           LS +  L   N+  NL      S+LA
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLL-----STLA 208

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
              ++  L   +N +   +           L  L L     +++    +  +  L  + +
Sbjct: 209 IPIAVEELDASHNSIN-VVRG----PVNVELTILKL--QHNNLTDTAWLLNYPGLVEVDL 261

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
               ++           ++  L+ L++  N L   L                   + +++
Sbjct: 262 SYNELEKI---MYHPFVKMQRLERLYISNNRLV-ALN-------------LYGQPIPTLK 304

Query: 268 RLFLSYNQFQIPFSLEP-FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326
            L LS+N       +E       +L+    + N I     S+H T     L       + 
Sbjct: 305 VLDLSHNHLL---HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361

Query: 327 IHATFPKFLYNQ-HDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ 385
           + A F         D +     D  L+        +++      +L+  +L+   +   +
Sbjct: 362 LRALFRNVARPAVDDADQHCKIDYQLEHGLC--CKESDKPYLDRLLQYIALTSVVEKVQR 419

Query: 386 PHWHLDALHVSKNFFQGNIPL-EIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYL 444
                 A     +    +  + + G             +  L      L  +   ++  L
Sbjct: 420 AQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLL 479

Query: 445 RKLARLHL 452
           + L     
Sbjct: 480 QGLHAEID 487

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 87/536 (16%), Positives = 164/536 (30%), Gaps = 92/536 (17%)

Query: 100 LETLHLDSNNIAGFVENGGLER--LSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSL 157
            + L L  N+I+       L    +S LS+L++L L  N   +  F        L  L +
Sbjct: 54  TKALSLSQNSISE------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALG 217
            +NRL+ +I    +     +L  L L ++     +L     F +L               
Sbjct: 108 SHNRLQ-NI----SCCPMASLRHLDLSFNDF--DVLPVCKEFGNLT-------------- 146

Query: 218 DDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ 277
                      L  L +     R                   L+ +  +    +  +   
Sbjct: 147 ----------KLTFLGLSAAKFR----------------QLDLLPVAHLHLSCILLDLVS 180

Query: 278 IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN 337
                    +L                    H       L SV ++ S       +    
Sbjct: 181 YHIKGGETESLQIPNT------------TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQP---HWHLDALH 394
           + + E      +          L   P L  + L++   +      +        ++ L+
Sbjct: 229 KLNDENCQRLMT------FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA 454
           +        I  E   Y  + L     +L    +          +  +   ++    L  
Sbjct: 283 IYNLTITERIDREEFTYSETALK----SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 455 NYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ--GPIPLE 512
           +           + S    L  + N    ++      L  L  +++  N L+    + L 
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 513 FCQLNYLEILDLSENNISGSLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNR--SSIV 568
              ++ LE LD+S N+++       C+   +I  ++LS NML      G+ F      + 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML-----TGSVFRCLPPKVK 453

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
            LDL  N    +IP  +  L  L+ L +A+N L+         L  L+ I L +N 
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.7 bits (168), Expect = 4e-12
 Identities = 67/372 (18%), Positives = 120/372 (32%), Gaps = 24/372 (6%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSL-SNCSRLEGLYMS 477
             + L LS+N    L     S    L +L  L L  N     +   +      LE L +S
Sbjct: 53  RTKALSLSQNSISELRMPDISF---LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS 108

Query: 478 DNNLYGNIPARLGNLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISGSLPSC 536
            N L  NI      ++SL  + ++ N     P+  EF  L  L  L LS           
Sbjct: 109 HNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 537 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLIL 596
            +H  +  + L     +            +   L L ++  S         +  L +L L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 597 ANNNLEGEVPNQL-----CGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD--NVGSSA 649
           +N  L  E   +L        +   L++++  ++       +             +    
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 650 PTFNPNRRTTYFVGPSILEKEESIM-FTTKEISFSYKG--KPLNKMYGVDLSCNKLTGEI 706
            T         F       K   I     +   FS +       +M    LS +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN--GKIPPQLVELNAL 764
                  ++   LNF+ N  T  +    S L ++++L +  N L    K+      +++L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 765 VVFSVAHNNLSA 776
               V+ N+L++
Sbjct: 406 ETLDVSLNSLNS 417

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.7 bits (168), Expect = 4e-12
 Identities = 68/420 (16%), Positives = 125/420 (29%), Gaps = 53/420 (12%)

Query: 264 TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
              + L LS N       L       LS+L+V     N I               LE + 
Sbjct: 52  PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLD 106

Query: 322 LSGSDIHATFPKFLYNQHDLELV--DFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL-SG 378
           +S + +       + +   L+L   DF    +  EF N        L+ L L        
Sbjct: 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNL-----TKLTFLGLSAAKFRQL 161

Query: 379 PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGV--------------YFPSHLAMGCFNLE 424
                   H     L +     +G     + +               F   + M    L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 425 YLVLSENSLHGQ-------LFSKKNYLRKLARLHLDANYFTGEIPKSLSNC---SRLEGL 474
           +L LS   L+ +         S+      L  + L     T +    L        +E L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 475 YMSDNNLYGNIPARLGNLSSLNDIMMA-----SNHLQGPIPLEFCQLNYLEILDLSENNI 529
            + +  +   I       S      +      +          +     + I  LS ++ 
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 530 SGSLPSCSSH-STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS--GNIPYWIE 586
                 C    S+   ++ ++N+      +        + TL L  N       +    +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 587 RLIRLRYLILANNNLEGEVPNQLCGL-KQLRLIDLSNNNL----FGQIPGCLDNTSLHNN 641
            +  L  L ++ N+L     ++ C   + + +++LS+N L    F  +P  +    LHNN
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 80/415 (19%), Positives = 136/415 (32%), Gaps = 33/415 (7%)

Query: 96  PFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLS-SLRT 154
           P   L  L L  N+               L+KL  L L    F       +A L  S   
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKE---FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 155 LSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQ-NGRVD 213
           L L    +KG       + N T L  +    S   + +  S+ A   L+  +I+ N    
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSY 273
             L      L R   L  + +   +           +L       P+ +L +I  L ++ 
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKC----SVKLFQFFWPRPVEYL-NIYNLTITE 290

Query: 274 NQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD-IHATFP 332
              +  F+      L  L +   +        E+ +S   +  ++ +S+S +  IH   P
Sbjct: 291 RIDREEFTYS-ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 333 KFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNN---SLSGPFQTPIQPHWH 389
               +   L        N+  +           L TL+L+ N   +             +
Sbjct: 350 PSPSSFTFLNF----TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK----N 401

Query: 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLAR 449
           + +L            L    Y          ++  L LS N L G +F       K+  
Sbjct: 402 MSSLETLDVSLNS---LNSHAY--DRTCAWAESILVLNLSSNMLTGSVFRC--LPPKVKV 454

Query: 450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP-ARLGNLSSLNDIMMASN 503
           L L  N     IPK +++   L+ L ++ N L  ++P      L+SL  I +  N
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 24/194 (12%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
           F ++    L  ++                S    LN  +N+F +S+F   + L  L+TL 
Sbjct: 328 FAEMNIKMLSISDTPFIHM----VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF-TSLKRLSIQNGRVDGA 215
           L  N LK    V     N ++LE L +  +SL+        A+  S+  L++ +  + G+
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLRGTLPC------------LYLNQLTGNISSSPLIHL 263
           +       C    ++ L +  N +  ++P             +  NQL  ++       L
Sbjct: 444 VFR-----CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496

Query: 264 TSIERLFLSYNQFQ 277
           TS++ ++L  N + 
Sbjct: 497 TSLQYIWLHDNPWD 510

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 85/425 (20%), Positives = 139/425 (32%), Gaps = 68/425 (16%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
           LN +  +  Q L+ L ++       + N       GLS L +L L  N F      +  G
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTF---RGLSSLIILKLDYNQFLQLETGAFNG 101

Query: 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLKRL 205
           L++L  L+L    L G++         T+LE L L  +  +I  ++  + F        L
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN--NIKKIQPASFFLNMRRFHVL 159

Query: 206 SIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTS 265
            +   +V     +D        H   L +       TL  +    L      +P    TS
Sbjct: 160 DLTFNKVKSICEEDLLNFQGK-HFTLLRLSSI----TLQDMNEYWLGWEKCGNP-FKNTS 213

Query: 266 IERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGS 325
           I  L LS N F+     + FF+                   SS   T     ++ +  G 
Sbjct: 214 ITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG- 271

Query: 326 DIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ 385
                          ++  D S S +       +  +  +L  L L  N ++        
Sbjct: 272 ----------LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-------- 312

Query: 386 PHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKN 442
                    +  N F                  G  +L  L LS+N   S+  ++F    
Sbjct: 313 --------KIDDNAFW-----------------GLTHLLKLNLSQNFLGSIDSRMFEN-- 345

Query: 443 YLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMA 501
            L KL  L L  N+      +S      L+ L +  N L  ++P      L+SL  I + 
Sbjct: 346 -LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 403

Query: 502 SNHLQ 506
           +N   
Sbjct: 404 TNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 87/464 (18%), Positives = 154/464 (33%), Gaps = 108/464 (23%)

Query: 131 LNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI 190
           ++L  N       +S + L  L+ L +        I    T    ++L  L LDY+    
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFL- 92

Query: 191 SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQ 250
                           ++ G  +G           L +L+ L +   +L G +       
Sbjct: 93  ---------------QLETGAFNG-----------LANLEVLTLTQCNLDGAV------- 119

Query: 251 LTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP---FFNLSKLKVFSGEFNEIYVEPES 307
               +S +    LTS+E L L  N  +    ++P   F N+ +  V    FN++    E 
Sbjct: 120 ----LSGNFFKPLTSLEMLVLRDNNIK---KIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 308 SHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLS 367
                       + L                  + L D ++  L  E      KN  +++
Sbjct: 173 DLLNFQGKHFTLLRL----------------SSITLQDMNEYWLGWEKCGNPFKNT-SIT 215

Query: 368 TLVLRNNSL---------SGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAM 418
           TL L  N                T IQ     ++ ++  +F   N        F     +
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG---L 272

Query: 419 GCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475
               ++   LS++   +L   +FS       L +L L  N        +    + L  L 
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSH---FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 476 MSDNNLYGNIPARL-GNLSSLNDIMMASNHLQGPIPLE-FCQLNYLEILDLSENNISGSL 533
           +S N L G+I +R+  NL  L  + ++ NH++  +  + F  L  L+ L L  N +  S+
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SV 386

Query: 534 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
           P                        G F   +S+  + L  N +
Sbjct: 387 PD-----------------------GIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 76/378 (20%), Positives = 134/378 (35%), Gaps = 72/378 (19%)

Query: 422 NLEYLVLSENSLHGQL----FSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMS 477
           +L++L + + +    +    F     L  L  L LD N F      + +  + LE L ++
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRG---LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 478 DNNL-YGNIPARL-GNLSSLNDIMMASNHLQGPIPLE-FCQLNYLEILDLSENNISGSLP 534
             NL    +       L+SL  +++  N+++   P   F  +    +LDL+ N +  S+ 
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SIC 170

Query: 535 SCS----SHSTIQQVHLSKNMLY-------GPLKYGTFFNRSSIVTLDLSYNSFSGNIPY 583
                         + LS   L        G  K G  F  +SI TLDLS N F  ++  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 584 WIERLI---RLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640
                I   +++ LIL+N+       N           D  N    G     +    L  
Sbjct: 231 RFFDAIAGTKIQSLILSNSY------NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 641 NG-DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 699
           +    +  S  +   +                                       + L+ 
Sbjct: 285 SKIFALLKSVFSHFTDLEQ------------------------------------LTLAQ 308

Query: 700 NKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL 758
           N++  +I       LT++  LN S N L  +    F NL+++E LD+S+N++   +  Q 
Sbjct: 309 NEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQS 366

Query: 759 -VELNALVVFSVAHNNLS 775
            + L  L   ++  N L 
Sbjct: 367 FLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 67/395 (16%), Positives = 127/395 (32%), Gaps = 74/395 (18%)

Query: 264 TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEI--YVEPESSHSTTPKFQLES 319
             +  + LS N       L    F  L  L+    E       +   +    +    L  
Sbjct: 30  AHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS---SLII 83

Query: 320 VSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEF-PNWLLKNNPNLSTLVLRNNSLSG 378
           + L  +              +LE++  +  NL G        K   +L  LVLR+N++  
Sbjct: 84  LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 379 PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLH---- 434
                IQP           +FF                         L L+ N +     
Sbjct: 144 -----IQPA----------SFFLNMR-----------------RFHVLDLTFNKVKSICE 171

Query: 435 ------GQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR 488
                          L  +    ++  +   E   +    + +  L +S N    ++  R
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 489 LGNLSSLNDIM-------------MASNHLQGPIPLEFCQL--NYLEILDLSENNISGSL 533
             +  +   I                  + + P    F  L  + ++  DLS++ I  +L
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-AL 290

Query: 534 PS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLIR 590
                S  + ++Q+ L++N +   +    F+  + ++ L+LS N    +I   + E L +
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDK 348

Query: 591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           L  L L+ N++         GL  L+ + L  N L
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 77/446 (17%), Positives = 123/446 (27%), Gaps = 125/446 (28%)

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
            +++ + L  NS++   +T       L  L V +      I                 +L
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS--------SL 81

Query: 424 EYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEI--PKSLSNCSRLEGLYMSD 478
             L L  N    L    F+    L  L  L L      G +         + LE L + D
Sbjct: 82  IILKLDYNQFLQLETGAFNG---LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 479 NNLYGNIPARL-GNLSSLNDIMMASNHLQ------------------------------- 506
           NN+    PA    N+   + + +  N ++                               
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 507 ---GPIPLEFCQLNYLEILDLSENNISGSLPS--------------CSSHSTIQQVHLSK 549
                      +   +  LDLS N    S+                  S+S         
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 550 NMLYGPLKYGTFFN--RSSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVP 606
                P    TF     S + T DLS +     +   +      L  L LA N +     
Sbjct: 259 TNFKDPDN-FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 607 NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSI 666
           N   GL  L  ++LS N L           S+ +                          
Sbjct: 317 NAFWGLTHLLKLNLSQNFL----------GSIDSR------------------------- 341

Query: 667 LEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNN 725
                  MF           + L+K+  +DLS N +   +  Q    L N++ L    N 
Sbjct: 342 -------MF-----------ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 726 LTGVIPVSFSNLNQVESLDVSHNNLN 751
           L  V    F  L  ++ + +  N  +
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 57/308 (18%), Positives = 107/308 (34%), Gaps = 34/308 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN----LFNNSIF 143
           QL          LE L L   N+ G V +G       L+ L++L L  N    +   S F
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNF--FKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 144 SSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAA----- 198
                +     L L +N++      +E L NF       L  SS+ +  +          
Sbjct: 151 L---NMRRFHVLDLTFNKV--KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 199 -----FTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT-LPCLYLNQLT 252
                 TS+  L +       ++            +Q L +  +   G+           
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 253 GNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEI-YVEPESSH 309
               +   +  + ++   LS ++     +L    F + + L+  +   NEI  ++  +  
Sbjct: 266 NF--TFKGLEASGVKTCDLSKSKIF---ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 310 STTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTL 369
             T    L  ++LS + + +   +   N   LE++D S ++++    +      PNL  L
Sbjct: 321 GLT---HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376

Query: 370 VLRNNSLS 377
            L  N L 
Sbjct: 377 ALDTNQLK 384

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 65/297 (21%), Positives = 103/297 (34%), Gaps = 56/297 (18%)

Query: 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSK 397
            +    V     NL+ E P+ +   + N   L L  N +        +   HL+ L +S+
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 398 NFFQGNIPLEIGVYFPSHLAMGCF----NLEYLVLSEN---SLHGQLFSKKNYLRKLARL 450
           N    +I           + +G F    NL  L L +N   ++    F    YL KL  L
Sbjct: 98  N----HI---------RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKEL 141

Query: 451 HLDANYFTGEIPKSL-SNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGP 508
            L  N     IP    +    L  L + +      I       LS+L  + +A  +L+  
Sbjct: 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199

Query: 509 IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
           IP     L  L+ LDLS N++S ++                         G+F     + 
Sbjct: 200 IP-NLTPLIKLDELDLSGNHLS-AIRP-----------------------GSFQGLMHLQ 234

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
            L +  +          + L  L  + LA+NNL     +    L  L  I L +N  
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 64/320 (20%), Positives = 108/320 (33%), Gaps = 90/320 (28%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
           E+P  +S  +    L + +N +   I      +L  L  + ++ NH++      F  L  
Sbjct: 57  EVPDGIS--TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113

Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
           L  L+L +N ++ ++P+                       G F   S +  L L  N   
Sbjct: 114 LNTLELFDNRLT-TIPN-----------------------GAFVYLSKLKELWLRNNPIE 149

Query: 579 GNIP-YWIERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDLSNNNLFGQIPGCLDNT 636
            +IP Y   R+  LR L L        +      GL  LR ++L+  NL           
Sbjct: 150 -SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL----------- 197

Query: 637 SLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVD 696
                        P   P                                  L K+  +D
Sbjct: 198 ----------REIPNLTP----------------------------------LIKLDELD 213

Query: 697 LSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
           LS N L+  I P     L +++ L    + +  +   +F NL  +  ++++HNNL   +P
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 756 PQLVE-LNALVVFSVAHNNL 774
             L   L+ L    + HN  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 54/280 (19%), Positives = 89/280 (31%), Gaps = 51/280 (18%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
                 L+L  N I     N        L  L++L L RN        +  GL++L TL 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  NRL  +I         + L++L L   +  I  + S  AF  +              
Sbjct: 119 LFDNRLT-TIP-NGAFVYLSKLKELWL--RNNPIESIPS-YAFNRIPS------------ 161

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
                       L+ L +G              +L+  IS      L+++  L L+    
Sbjct: 162 ------------LRRLDLGEL-----------KRLS-YISEGAFEGLSNLRYLNLAMCNL 197

Query: 277 QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336
           +    +     L KL       N +      S        L+ + +  S I         
Sbjct: 198 R---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH--LQKLWMIQSQIQVIERNAFD 252

Query: 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
           N   L  ++ + +NL    P+ L     +L  + L +N  
Sbjct: 253 NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 53/240 (22%), Positives = 88/240 (36%), Gaps = 32/240 (13%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            +  +     + LE L L  N+I   +E G     +GL+ L  L L  N        +  
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIR-TIEIGA---FNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLKR 204
            LS L+ L L  N ++ SI      +   +L  L L      +S + S  AF   ++L+ 
Sbjct: 134 YLSKLKELWLRNNPIE-SIP-SYAFNRIPSLRRLDLGELK-RLSYI-SEGAFEGLSNLRY 189

Query: 205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLT 264
           L++    +      +   L  L  L EL + GN L               I       L 
Sbjct: 190 LNLAMCNL-----REIPNLTPLIKLDELDLSGNHLS-------------AIRPGSFQGLM 231

Query: 265 SIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSG 324
            +++L++  +Q Q+      F NL  L   +   N + + P    +      LE + L  
Sbjct: 232 HLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH--LERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 22/220 (10%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           ++   L+L  N          + L  L  L L+ N++         GL  L  ++L +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 625 LFGQIPGCLDNTS------LHNNG-DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT 677
           L     G     S      L NN  +++ S A    P+ R         L       F  
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE- 182

Query: 678 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNL 737
                      L+ +  ++L+   L  EIP  +  L  +  L+ S N+L+ + P SF  L
Sbjct: 183 ----------GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 738 NQVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLSA 776
             ++ L +  + +   I       L +LV  ++AHNNL+ 
Sbjct: 231 MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
           + +        L  L L       ++  G      GLS L+ LNL           +L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLAMCNLRE--IPNLTP 205

Query: 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQ 208
           L  L  L L  N L  +I    +     +L+ L +  S + +    +     SL  +++ 
Sbjct: 206 LIKLDELDLSGNHLS-AIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 209 NGRV----DGALGDDEEGLCRLGHLQELHMGGNDLR 240
           +  +                 L HL+ +H+  N   
Sbjct: 264 HNNLTLLPHDLFTP-------LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           V      L  E+P  I   TN R LN   N +  +   SF +L  +E L +S N++   I
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103

Query: 755 PPQ-LVELNALVVFSVAHNNLS 775
                  L  L    +  N L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT 125

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 59/297 (19%), Positives = 99/297 (33%), Gaps = 56/297 (18%)

Query: 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSK 397
            +    V  +   L  E P  +     N   L L  N++        +   HL+ L + +
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 398 NFFQGNIPLEIGVYFPSHLAMGCF----NLEYLVLSEN---SLHGQLFSKKNYLRKLARL 450
           N    +I           + +G F    +L  L L +N    +    F    YL KL  L
Sbjct: 109 N----SI---------RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLREL 152

Query: 451 HLDANYFTGEIPK-SLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGP 508
            L  N     IP  + +    L  L + +      I       L +L  + +   +++  
Sbjct: 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210

Query: 509 IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
           +P     L  LE L++S N+    +                         G+F   SS+ 
Sbjct: 211 MP-NLTPLVGLEELEMSGNHFP-EIRP-----------------------GSFHGLSSLK 245

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
            L +  +  S       + L  L  L LA+NNL     +    L+ L  + L +N  
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 5e-16
 Identities = 53/280 (18%), Positives = 83/280 (29%), Gaps = 51/280 (18%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
                 L+L  NNI     +        L  L++L LGRN        +  GL+SL TL 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  N L   I      +  + L +L L   +  I  + S  AF  +              
Sbjct: 130 LFDNWLT-VIP-SGAFEYLSKLRELWL--RNNPIESIPS-YAFNRVPS------------ 172

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
                       L  L +G              +L   IS      L +++ L L     
Sbjct: 173 ------------LMRLDLGEL-----------KKLE-YISEGAFEGLFNLKYLNLGMCNI 208

Query: 277 QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336
           +    +     L  L+      N        S        L+ + +  S +         
Sbjct: 209 K---DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS--LKKLWVMNSQVSLIERNAFD 263

Query: 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
               L  ++ + +NL    P+ L      L  L L +N  
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.5 bits (191), Expect = 5e-15
 Identities = 59/316 (18%), Positives = 105/316 (33%), Gaps = 75/316 (23%)

Query: 445 RKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASN 503
            + +++       + E+P+ +   S    L + +NN+   I A    +L  L  + +  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRN 109

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFN 563
            ++      F  L  L  L+L +N ++  +PS                       G F  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPS-----------------------GAFEY 145

Query: 564 RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNN-LEGEVPNQLCGLKQLRLIDLSN 622
            S +  L L  N       Y   R+  L  L L     LE        GL  L+ ++L  
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 623 NNLFGQIPGCLDNTSL------HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT 676
            N+   +P       L       N+   +   +           F G S L+K       
Sbjct: 206 CNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGS-----------FHGLSSLKK------- 246

Query: 677 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ-IGKLTNIRALNFSHNNLTGVIPVSFS 735
                             + +  ++++  I       L ++  LN +HNNL+ +    F+
Sbjct: 247 ------------------LWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 736 NLNQVESLDVSHNNLN 751
            L  +  L + HN  N
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 9e-15
 Identities = 61/297 (20%), Positives = 102/297 (34%), Gaps = 72/297 (24%)

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
            IP+    L+      +  N++Q      F  L++LE+L L  N+I   +          
Sbjct: 72  GIPSNTRYLN------LMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEV-------- 116

Query: 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603
                          G F   +S+ TL+L  N  +       E L +LR L L NN +E 
Sbjct: 117 ---------------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161

Query: 604 EVPNQLCGLKQLRLIDLSNNNLFGQIP-GCLDN-TSLH--NNGDNVGSSAPTFNPNRRTT 659
                   +  L  +DL        I  G  +   +L   N G       P         
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL------- 214

Query: 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ-IGKLTNIRA 718
                                       PL  +  +++S N    EI P     L++++ 
Sbjct: 215 ---------------------------TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK 246

Query: 719 LNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE-LNALVVFSVAHNNL 774
           L   ++ ++ +   +F  L  +  L+++HNNL+  +P  L   L  LV   + HN  
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 56/224 (25%), Positives = 84/224 (37%), Gaps = 32/224 (14%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            + A        LE L L  N+I   +E G     +GL+ L  L L  N        +  
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIR-QIEVGA---FNGLASLNTLELFDNWLTVIPSGAFE 144

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLKR 204
            LS LR L L  N ++ SI      +   +L  L L      +  + S  AF    +LK 
Sbjct: 145 YLSKLRELWLRNNPIE-SIP-SYAFNRVPSLMRLDLG-ELKKLEYI-SEGAFEGLFNLKY 200

Query: 205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR----------GTLPCLYL--NQLT 252
           L++    +      D   L  L  L+EL M GN              +L  L++  +Q++
Sbjct: 201 LNLGMCNI-----KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 253 GNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFS 295
             I  +    L S+  L L++N    +P  L  F  L  L    
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 53/256 (20%), Positives = 92/256 (35%), Gaps = 35/256 (13%)

Query: 522 LDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581
           +  +   +S  +P     +T + ++L +N +   ++  TF +   +  L L  NS     
Sbjct: 59  VVCTRRGLS-EVPQGIPSNT-RYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN 641
                 L  L  L L +N L          L +LR + L NN +           S+   
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----------ESIP-- 163

Query: 642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701
                S A    P+           LE      F             L  +  ++L    
Sbjct: 164 -----SYAFNRVPSLMRLDLGELKKLEYISEGAFE-----------GLFNLKYLNLGMCN 207

Query: 702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQ-LVE 760
           +     P +  L  +  L  S N+   + P SF  L+ ++ L V ++ ++  I       
Sbjct: 208 IKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDG 264

Query: 761 LNALVVFSVAHNNLSA 776
           L +LV  ++AHNNLS+
Sbjct: 265 LASLVELNLAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 47/189 (24%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
           + +        L  L L       ++  G      GL  LK LNLG     +    +L  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLGMCNIKD--MPNLTP 216

Query: 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQ 208
           L  L  L +  N          +    ++L+ L +  S      +  I            
Sbjct: 217 LVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQ-----VSLIER---------- 259

Query: 209 NGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIER 268
                 A          L  L EL++  N+L              ++       L  +  
Sbjct: 260 -----NAFDG-------LASLVELNLAHNNLS-------------SLPHDLFTPLRYLVE 294

Query: 269 LFLSYNQFQ 277
           L L +N + 
Sbjct: 295 LHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 38/220 (17%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           S+   L+L  N+           L  L  L L  N++         GL  L  ++L +N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY-FVGPSILEKEESIMFTTKEISFS 683
           L          T + +           F    +    ++  + +E   S  F        
Sbjct: 135 L----------TVIPSG---------AFEYLSKLRELWLRNNPIESIPSYAF-------- 167

Query: 684 YKGKPLNKMYGVDLS-CNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVE 741
                +  +  +DL    KL   I       L N++ LN    N+   +P + + L  +E
Sbjct: 168 ---NRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLE 221

Query: 742 SLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLSAAERN 780
            L++S N+   +I P     L++L    V ++ +S  ERN
Sbjct: 222 ELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 1e-18
 Identities = 63/303 (20%), Positives = 106/303 (34%), Gaps = 37/303 (12%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
              F +    +L   ++            + L+ +  +    +   +     +  L ++ 
Sbjct: 17  DDAFAETIKDNLKKKSVTD------AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVT 68

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            L L  N+L   I   + L N  NL  L LD +   I  L S+     LK LS+++  + 
Sbjct: 69  KLFLNGNKLT-DI---KPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLKSLSLEHNGI- 121

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLR-----GTLPCL-YLNQLTGN-ISS-SPLIHLTS 265
                D  GL  L  L+ L++G N +        L  L  L+ L  N IS   PL  LT 
Sbjct: 122 ----SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS-LEDNQISDIVPLAGLTK 176

Query: 266 IERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGS 325
           ++ L+LS N       L     L  L V      E   +P +  S          ++  +
Sbjct: 177 LQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN----TVKNT 229

Query: 326 DIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ 385
           D     P+ + +  D E  +        EF N +        T+        G    P++
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLP--EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

Query: 386 PHW 388
             +
Sbjct: 288 EVY 290

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 6e-16
 Identities = 48/271 (17%), Positives = 86/271 (31%), Gaps = 37/271 (13%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
           +     +  L L+ N +        ++ L+ L  L  L L  N       SSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKLTD------IKPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLK 112

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
           +LSL +N +   I     L +   LE L L   +  I+ +  ++  T L  LS+++ ++ 
Sbjct: 113 SLSLEHNGIS-DI---NGLVHLPQLESLYL--GNNKITDITVLSRLTKLDTLSLEDNQI- 165

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS-SPLIHLTSIERLFLS 272
                D   L  L  LQ L++  N                +IS    L  L +++ L L 
Sbjct: 166 ----SDIVPLAGLTKLQNLYLSKN----------------HISDLRALAGLKNLDVLELF 205

Query: 273 YNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFP 332
             +      +    NL            +      S     +       L       +F 
Sbjct: 206 SQECLNKP-INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

Query: 333 KFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
            +           F     +     + +  +
Sbjct: 265 FYQPVTIGKAKARFHGRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 47/321 (14%), Positives = 104/321 (32%), Gaps = 35/321 (10%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
                      L+  S++            +D +  + +  +    ++            
Sbjct: 17  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQ-----------Y 63

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
             N+  L L+ N L          L+ L  L LD N    ++  SL +  +L+ L +  N
Sbjct: 64  LPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHN 119

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +  +I   L +L  L  + + +N +     L   +L  L+ L L +N IS  +   +  
Sbjct: 120 GI-SDING-LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGL 174

Query: 540 STIQQVHLSKNML--YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA 597
           + +Q ++LSKN +     L         ++  L+L               L+    +   
Sbjct: 175 TKLQNLYLSKNHISDLRALA-----GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRR 657
           + +L    P  +         ++  +          + + +      +G +   F+    
Sbjct: 230 DGSL--VTPEIISDDGDYEKPNVKWHL----PEFTNEVSFIFYQPVTIGKAKARFHGRVT 283

Query: 658 TTYFVGPSILEKEESIMFTTK 678
                  ++    +  +  TK
Sbjct: 284 QPLKEVYTVSYDVDGTVIKTK 304

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 4e-10
 Identities = 58/313 (18%), Positives = 95/313 (30%), Gaps = 93/313 (29%)

Query: 170 ETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL 229
              D F       L   S  ++   +     S+ ++   N  +        +G+  L ++
Sbjct: 15  FPDDAFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNV 67

Query: 230 QELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLS 289
            +L + GN L                   PL +L ++  LFL  N+ +    L    +L 
Sbjct: 68  TKLFLNGNKLT---------------DIKPLTNLKNLGWLFLDENKIK---DLSSLKDLK 109

Query: 290 KLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDS 349
           KLK  S E N I                                               S
Sbjct: 110 KLKSLSLEHNGI-----------------------------------------------S 122

Query: 350 NLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIG 409
           ++ G      L + P L +L L NN ++    T +     LD L +  N     +PL   
Sbjct: 123 DING------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA-- 172

Query: 410 VYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS 469
                    G   L+ L LS+N +          L+ L  L L +     +     SN  
Sbjct: 173 ---------GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 470 RLEGLYMSDNNLY 482
               +  +D +L 
Sbjct: 222 VPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 7e-10
 Identities = 51/355 (14%), Positives = 103/355 (29%), Gaps = 78/355 (21%)

Query: 221 EGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPF 280
                     + ++    +                 +     L SI+++  + +  +   
Sbjct: 15  FPDDAFAETIKDNLKKKSVT---------------DAVTQNELNSIDQIIANNSDIK--- 56

Query: 281 SLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD 340
           S++    L  +       N++                       +DI     K L N  +
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKL-----------------------TDI-----KPLTNLKN 88

Query: 341 LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFF 400
           L  +   ++ +K +  +  LK+   L +L L +N +S      +     L++L++  N  
Sbjct: 89  LGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 143

Query: 401 QGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGE 460
                L                L+ L L +N +          L KL  L+L  N+ + +
Sbjct: 144 TDITVLS-----------RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-D 189

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLE 520
           + ++L+    L+ L +              NL   N +      L  P  +         
Sbjct: 190 L-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG----- 243

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
             D  + N+   LP         +V           K    F+      L   Y 
Sbjct: 244 --DYEKPNVKWHLP-----EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 4e-09
 Identities = 41/278 (14%), Positives = 104/278 (37%), Gaps = 63/278 (22%)

Query: 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLY- 553
           + + +  S  ++   P +          +L + +++    + +  ++I Q+  + + +  
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKS 57

Query: 554 -GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612
              ++Y       ++  L L+ N  + +I   +  L  L +L L  N ++ ++ + L  L
Sbjct: 58  VQGIQYLP-----NVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDL 108

Query: 613 KQLRLIDLSNNNLFGQIPGCLDNTSL------HNNGDNVGSSAPTFNPNRRTTYFVGPSI 666
           K+L+ + L +N +   I G +    L      +N   ++                   ++
Sbjct: 109 KKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-------------------TV 148

Query: 667 LEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726
           L +                   L K+  + L  N+++ +I P +  LT ++ L  S N++
Sbjct: 149 LSR-------------------LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI 187

Query: 727 TGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNAL 764
           + +     + L  ++ L++       K       L   
Sbjct: 188 SDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 55/268 (20%)

Query: 489 LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548
               +      +    +   +     +LN ++ +  + ++I  S+        + ++ L+
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLN 73

Query: 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ 608
            N L          N  ++  L L  N    ++   ++ L +L+ L L +N +  ++   
Sbjct: 74  GNKL---TDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING- 126

Query: 609 LCGLKQLRLIDLSNNNLFGQIPG-----CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVG 663
           L  L QL  + L NN +   I        LD  SL +N                      
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQ--------------------- 164

Query: 664 PSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSH 723
              +     +               L K+  + LS N ++ ++   +  L N+  L    
Sbjct: 165 ---ISDIVPL-------------AGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS 206

Query: 724 NNLTGVIPVSFSNLNQVESLDVSHNNLN 751
                      SNL    ++  +  +L 
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLV 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 55/286 (19%), Positives = 95/286 (33%), Gaps = 35/286 (12%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGY 159
           +++L L +N I     +     L     L+ L L  N  N     S + L SL  L L Y
Sbjct: 54  VKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 160 NRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDD 219
           N L  ++         ++L  L L  +      L   + F+ L +L I            
Sbjct: 110 NYLS-NLSS-SWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 220 EEG-LCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQI 278
           +      L  L+EL +  +DL+             +     L  + ++  L L   Q   
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQ-------------SYEPKSLKSIQNVSHLILHMKQHI- 211

Query: 279 PFSLEP--FFNLSKLKVFSGEFNEIYVEPESS------HSTTPKFQLESVSLSGSDIHAT 330
              L        S ++       ++     S       +S   KF   +V ++   +   
Sbjct: 212 --LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ- 268

Query: 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
             K L     L  ++FS + LK   P+ +     +L  + L  N  
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 28/294 (9%)

Query: 461 IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLE 520
           IP  L+    ++ L +S+N +     + L    +L  +++ SN +       F  L  LE
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 521 ILDLSENNISGSLPS--CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
            LDLS N +S +L S      S++  ++L  N      +   F + + +  L +      
Sbjct: 104 HLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 579 GNIPY-WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
             I       L  L  L +  ++L+   P  L  ++ +  + L                 
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH----------IL 212

Query: 638 LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDL 697
           L                +          +     S + T +  S             V +
Sbjct: 213 LLEI-------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI----KKFTFRNVKI 261

Query: 698 SCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
           +   L  ++   + +++ +  L FS N L  V    F  L  ++ + +  N  +
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 52/318 (16%), Positives = 99/318 (31%), Gaps = 67/318 (21%)

Query: 317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
           ++S+ LS + I       L    +L+ +  + + +          +  +L  L L  N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 377 SGPFQTPIQPHW-----HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN 431
           S      +   W      L  L++  N ++  +         + L      L+ L +   
Sbjct: 113 SN-----LSSSWFKPLSSLTFLNLLGNPYK-TLG-------ETSLFSHLTKLQILRVGNM 159

Query: 432 ----SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA 487
                +  + F+    L  L  L +DA+      PKSL +   +  L +           
Sbjct: 160 DTFTKIQRKDFAG---LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-------- 208

Query: 488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL 547
                  L +I                  + +E L+L + ++           T     L
Sbjct: 209 ---QHILLLEIF-------------VDVTSSVECLELRDTDL----------DTFHFSEL 242

Query: 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN 607
           S       +K  TF N      + ++  S    +   + ++  L  L  + N L+     
Sbjct: 243 STGETNSLIKKFTFRN------VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDG 295

Query: 608 QLCGLKQLRLIDLSNNNL 625
               L  L+ I L  N  
Sbjct: 296 IFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 27/209 (12%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS-SL 146
            L++S   P   L  L+L  N      E       S L+KL++L +G       I     
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIA--AFTSLKR 204
           AGL+ L  L +  + L+ S +  ++L +  N+  L L        +L  I     +S++ 
Sbjct: 171 AGLTFLEELEIDASDLQ-SYE-PKSLKSIQNVSHLIL--HMKQHILLLEIFVDVTSSVEC 226

Query: 205 LSIQNGRVDGA-----LGDDEEGLCRLGHLQELHMGGNDLRGTLPC-----------LYL 248
           L +++  +D          +   L +    + + +    L   +                
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 249 NQLTGNISSSPLIHLTSIERLFLSYNQFQ 277
           NQL  ++       LTS+++++L  N + 
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 34/255 (13%), Positives = 76/255 (29%), Gaps = 32/255 (12%)

Query: 505 LQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR 564
            +          +   I   S  +++ S+PS  + +  + + LS N +   +        
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGLTEAV-KSLDLSNNRI-TYISNSDLQRC 75

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
            ++  L L+ N  +         L  L +L L+ N L     +    L  L  ++L  N 
Sbjct: 76  VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
                       +L            +     +           K +   F         
Sbjct: 136 Y----------KTLGETS------LFSHLTKLQILRVGNMDTFTKIQRKDFA-------- 171

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESL 743
               L  +  +++  + L     P+    + N+  L         ++ +     + VE L
Sbjct: 172 ---GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 744 DVSHNNLNGKIPPQL 758
           ++   +L+     +L
Sbjct: 228 ELRDTDLDTFHFSEL 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 54/335 (16%), Positives = 105/335 (31%), Gaps = 74/335 (22%)

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209
            ++++L L  NR+   I     L    NL+ L L  + ++                +I+ 
Sbjct: 52  EAVKSLDLSNNRIT-YIS-NSDLQRCVNLQALVLTSNGIN----------------TIEE 93

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERL 269
                           LG L+ L             L  N L+ N+SSS    L+S+  L
Sbjct: 94  DSFSS-----------LGSLEHLD------------LSYNYLS-NLSSSWFKPLSSLTFL 129

Query: 270 FLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI--YVEPESSHSTTPKFQLESVSLSGSDI 327
            L  N ++       F +L+KL++      +    ++ +     T    LE + +  SD+
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT---FLEELEIDASDL 186

Query: 328 HATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH 387
            +  PK L +  ++  +               +    ++  L LR+  L     + +   
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST- 244

Query: 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKL 447
                           I                F    + +++ SL  Q+    N +  L
Sbjct: 245 ----------GETNSLIKK--------------FTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY 482
             L    N             + L+ +++  N   
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 17/210 (8%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
           NL  L+L  N    +    F+    L KL RL+L  N    E+P+ +     L+ L + +
Sbjct: 77  NLHTLILINNKISKISPGAFAP---LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130

Query: 479 NNLYGNIPAR-LGNLSSLNDIMMASNHLQ-GPIPLE-FCQLNYLEILDLSENNISGSLPS 535
           N +   +       L+ +  + + +N L+   I    F  +  L  + +++ NI+ ++P 
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

Query: 536 CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLI 595
                ++ ++HL  N +   +   +    +++  L LS+NS S      +     LR L 
Sbjct: 189 -GLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 596 LANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           L NN L  +VP  L   K ++++ L NNN+
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 59/303 (19%), Positives = 109/303 (35%), Gaps = 46/303 (15%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
            L +V  SD  L+ + P  L    P+ + L L+NN ++       +   +L  L +  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN- 86

Query: 400 FQGNIPLEIGVYFPSHLAMGCF----NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHL 452
               I         S ++ G F     LE L LS+N    L  ++       + L  L +
Sbjct: 87  ---KI---------SKISPGAFAPLVKLERLYLSKNQLKELPEKMP------KTLQELRV 128

Query: 453 DANYFTGEIPKSLSNCSRLEGLYMSDNNLY-GNIPAR-LGNLSSLNDIMMASNHLQGPIP 510
             N  T       +  +++  + +  N L    I       +  L+ I +A  ++   IP
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 187

Query: 511 LEFCQLNYLEILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
                   L  L L  N I+  + +      + + ++ LS N +   +  G+  N   + 
Sbjct: 188 QGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLR 243

Query: 569 TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG------EVPNQLCGLKQLRLIDLSN 622
            L L+ N     +P  +     ++ + L NNN+          P           + L +
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 623 NNL 625
           N +
Sbjct: 303 NPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 62/347 (17%), Positives = 112/347 (32%), Gaps = 91/347 (26%)

Query: 246 LYL--NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEI 301
           L L  N++T  I      +L ++  L L  N+      + P  F  L KL+      N++
Sbjct: 57  LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQL 112

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
              PE      PK  L+ + +  ++I                          +    +  
Sbjct: 113 KELPEK----MPK-TLQELRVHENEIT-------------------------KVRKSVFN 142

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
               +  + L  N L               +  +    FQ                 G  
Sbjct: 143 GLNQMIVVELGTNPLK--------------SSGIENGAFQ-----------------GMK 171

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPK-SLSNCSRLEGLYMS 477
            L Y+ +++    ++   L         L  LHLD N  T ++   SL   + L  L +S
Sbjct: 172 KLSYIRIADTNITTIPQGLPP------SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 478 DNNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS------ 530
            N++   +    L N   L ++ + +N L   +P       Y++++ L  NNIS      
Sbjct: 225 FNSI-SAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 531 -GSLPSCSSHSTIQQVHLSKNML-YGPLKYGTFFNRSSIVTLDLSYN 575
                  +  ++   V L  N + Y  ++  TF        + L   
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 75/312 (24%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN------------ 136
           +        + L TL L +N I+  +  G     + L KL+ L L +N            
Sbjct: 67  IKDGDFKNLKNLHTLILINNKIS-KISPGAF---APLVKLERLYLSKNQLKELPEKMPKT 122

Query: 137 -----LFNNSIFS----SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSS 187
                +  N I         GL+ +  + LG N LK S            L  + +  + 
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT- 181

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
            +I+ +       SL  L +   ++      D   L  L +L +L +  N +        
Sbjct: 182 -NITTIPQ-GLPPSLTELHLDGNKITKV---DAASLKGLNNLAKLGLSFNSIS------- 229

Query: 248 LNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPE 306
                  + +  L +   +  L L+ N+   +P       +   ++V     N I     
Sbjct: 230 ------AVDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNNNISAIGS 280

Query: 307 SSHSTTPKF----QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN 362
           +                VSL  + +                          E      + 
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYW-----------------------EIQPSTFRC 317

Query: 363 NPNLSTLVLRNN 374
               + + L N 
Sbjct: 318 VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 52/331 (15%), Positives = 115/331 (34%), Gaps = 64/331 (19%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
           ++PK L        L + +N +   I      NL +L+ +++ +N +    P  F  L  
Sbjct: 45  KVPKDLP--PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
           LE L LS+N +   LP      T+Q++ + +N +   ++   F   + ++ ++L  N   
Sbjct: 102 LERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLK 158

Query: 579 GNI--PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP-GCLDN 635
            +       + + +L Y+ +A+ N+          L +L L    + N   ++    L  
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL----DGNKITKVDAASLKG 214

Query: 636 TS------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPL 689
            +      L  N                       S ++            S +      
Sbjct: 215 LNNLAKLGLSFNS---------------------ISAVDNG----------SLA----NT 239

Query: 690 NKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV------IPVSFSNLNQVESL 743
             +  + L+ NKL  ++P  +     I+ +   +NN++ +       P   +       +
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 744 DVSHNNLN-GKIPPQL-VELNALVVFSVAHN 772
            +  N +   +I P     +       + + 
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 46/264 (17%), Positives = 92/264 (34%), Gaps = 46/264 (17%)

Query: 518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
           +L ++  S+  +   +P      T   + L  N +   +K G F N  ++ TL L  N  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDT-ALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI 88

Query: 578 SGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN-- 635
           S   P     L++L  L L+ N L+ E+P ++   K L+ + +  N +        +   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 636 --TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY 693
               +                N   +  +                        + + K+ 
Sbjct: 146 QMIVVELGT------------NPLKSSGIENGAF-------------------QGMKKLS 174

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            + ++   +T  IP  +    ++  L+   N +T V   S   LN +  L +S N+++  
Sbjct: 175 YIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-A 230

Query: 754 IPPQ-LVELNALVVFSVAHNNLSA 776
           +    L     L    + +N L  
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVK 254

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 24/193 (12%)

Query: 85  TAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS 144
            +  +        ++L  + +   NI    +            L  L+L  N       +
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQG-------LPPSLTELHLDGNKITKVDAA 210

Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR 204
           SL GL++L  L L +N +  ++D   +L N  +L +L L+ + L   +   +A    ++ 
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVD-NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 205 LSIQN---GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI 261
           + + N     +            +      + +  N ++              I  S   
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW-----------EIQPSTFR 316

Query: 262 HLTSIERLFLSYN 274
            +     + L   
Sbjct: 317 CVYVRAAVQLGNY 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 69/434 (15%), Positives = 142/434 (32%), Gaps = 57/434 (13%)

Query: 363 NPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFN 422
           + N ++ V     +        +    L +L    +       +E               
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE-----------KLTG 65

Query: 423 LEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY 482
           L  L+ + N++     S+      L  L  D+N  T  +   ++  ++L  L    N L 
Sbjct: 66  LTKLICTSNNITTLDLSQ---NTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 483 GNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTI 542
               ++   L+ LN    A N L     ++      L  LD   N    +    +  + +
Sbjct: 120 KLDVSQNPLLTYLN---CARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQL 172

Query: 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE 602
             +  S N     +          +  L+   N+ +  +   + + I+L +L  ++N L 
Sbjct: 173 TTLDCSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

Query: 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNVGSSAPTFNPNRRTTYF 661
            E+   +  L QL   D S N L       L   T+LH    ++     T N        
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282

Query: 662 VGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNF 721
            G   +          KE+  ++      ++Y +D     +T E+   + +   +  L  
Sbjct: 283 EGCRKI----------KELDVTH----NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 722 SHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781
           ++  LT    +  S+  +++SL   + ++       + ++ AL     A        +  
Sbjct: 326 NNTELTE---LDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKET 380

Query: 782 GPYCLKTWPCNGDY 795
                 T   + D 
Sbjct: 381 LTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 52/405 (12%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
            +    L++L   N+S++    T I+    L  L  + N     + L             
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLDLS-----------Q 83

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
             NL YL    N L     +    L KL  L+ D N  T      +S    L  L  + N
Sbjct: 84  NTNLTYLACDSNKLTNLDVTP---LTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARN 137

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            L     +    L+ L+      +  +    L+      L  LD S N I+  L   S +
Sbjct: 138 TLTEIDVSHNTQLTELD-----CHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELDV-SQN 190

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
             + +++   N +              +  LD S N  +  I   +  L +L Y   + N
Sbjct: 191 KLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFG-QIPGCLDNTSLHNNGDNVGSSAP-TFNPNRR 657
            L  E+   +  L +L  +     +L    +            G         T N    
Sbjct: 244 PLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 658 TTYFVGPSILEKEESIMFTTKEISFSY------KGKPLNKMYGVDLSCNKLTGEIPPQIG 711
                   I E + S       +  +             K+  +      +  +    +G
Sbjct: 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFSS-VG 358

Query: 712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVES-----LDVSHNNLN 751
           K+  +     +      +   + +N +   +     LD   N +N
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 69/423 (16%), Positives = 139/423 (32%), Gaps = 71/423 (16%)

Query: 122 LSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDL 181
              L+ L  L+   +   +   + +  L+ L  L    N +  ++D+       TNL  L
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLDLS----QNTNLTYL 90

Query: 182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241
             D + L  ++   +   T L  L+    ++       +  + +   L  L+   N L  
Sbjct: 91  ACDSNKLT-NL--DVTPLTKLTYLNCDTNKLT------KLDVSQNPLLTYLNCARNTLT- 140

Query: 242 TLPCLYLNQLT-------GNISSSPLIHLTSIERLFLSYNQF-QIPFSLEPFFNLSKLKV 293
            +   +  QLT         I+   +   T +  L  S+N+  ++  S         L  
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS-----QNKLLNR 195

Query: 294 FSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKG 353
            + + N I     + +      QL  +  S + +       +     L   D S + L  
Sbjct: 196 LNCDTNNITKLDLNQNI-----QLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT- 246

Query: 354 EFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFP 413
           E           L+TL      L    +  +  +  L             + +       
Sbjct: 247 ELDVS---TLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELDVT------ 294

Query: 414 SHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEG 473
                    L  L      +     S+     KL  L+L+    T E+   +S+ ++L+ 
Sbjct: 295 -----HNTQLYLLDCQAAGITELDLSQ---NPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 474 LYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL------EILDLSEN 527
           L   + ++  +  + +G + +LN+   A       +P E    N L      ++LD   N
Sbjct: 344 LSCVNAHI-QDFSS-VGKIPALNNNFEAEGQTIT-MPKETLTNNSLTIAVSPDLLDQFGN 400

Query: 528 NIS 530
            ++
Sbjct: 401 PMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 43/329 (13%), Positives = 84/329 (25%), Gaps = 58/329 (17%)

Query: 80  QFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFN 139
            +L     +L    ++    L  L+   N +           +S  ++L  L+   N   
Sbjct: 109 TYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLN--K 159

Query: 140 NSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDY---SSLHISILKS- 195
                 +   + L TL   +N++   +D    +     L  L  D    + L ++     
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKIT-ELD----VSQNKLLNRLNCDTNNITKLDLNQNIQL 214

Query: 196 --------------IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241
                         +   T L         +       E  +  L  L  LH    DL  
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLTYFDCSVNPL------TELDVSTLSKLTTLHCIQTDLL- 267

Query: 242 TLPCLYLNQLTG-------NISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKV 293
            +   +  QL          I    + H T +  L         +  S        KL  
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS-----QNPKLVY 322

Query: 294 FSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY------NQHDLELVDFS 347
                 E+     S ++        +  +         P              +     +
Sbjct: 323 LYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 348 DSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
           +++L       LL    N   +   +  +
Sbjct: 383 NNSLTIAVSPDLLDQFGNPMNIEPGDGGV 411

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 16/209 (7%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
           +L  LVL  N    +H + FS    LRKL +L++  N+   EIP +L   S L  L + D
Sbjct: 79  HLYALVLVNNKISKIHEKAFSP---LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD 132

Query: 479 NNLYGNIPAR-LGNLSSLNDIMMASNHLQ-GPIPLEFCQLNYLEILDLSENNISGSLPSC 536
           N +   +P      L ++N I M  N L+             L  L +SE  ++  +P  
Sbjct: 133 NRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK- 189

Query: 537 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLIL 596
               T+ ++HL  N +   ++       S +  L L +N         +  L  LR L L
Sbjct: 190 DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 597 ANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
            NN L   VP  L  LK L+++ L  NN+
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 65/304 (21%), Positives = 104/304 (34%), Gaps = 49/304 (16%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
            L +V  SD  LK   P  +   +P+ + L L+NN +S   +   +   HL AL +  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN- 88

Query: 400 FQGNIPLEIGVYFPSHLAMGCF----NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHL 452
               I         S +    F     L+ L +S+N    +   L         L  L +
Sbjct: 89  ---KI---------SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP------SSLVELRI 130

Query: 453 DANYFTGEIPKSLSNCSRLEGLYMSDNNLY-GNIPARLGNLSSLNDIMMASNHLQGPIPL 511
             N          S    +  + M  N L          +   LN + ++   L G IP 
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK 189

Query: 512 EFCQLNYLEILDLSENNIS----GSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSI 567
           +      L  L L  N I       L   S    + ++ L  N +   ++ G+     ++
Sbjct: 190 DL--PETLNELHLDHNKIQAIELEDLLRYSK---LYRLGLGHNQIRM-IENGSLSFLPTL 243

Query: 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLK------QLRLIDLS 621
             L L  N  S  +P  +  L  L+ + L  NN+     N  C +           I L 
Sbjct: 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 622 NNNL 625
           NN +
Sbjct: 303 NNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 60/344 (17%), Positives = 103/344 (29%), Gaps = 86/344 (25%)

Query: 246 LYL--NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEI 301
           L L  N ++  +       L  +  L L  N+      +    F  L KL+      N +
Sbjct: 59  LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHL 114

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
                                   +I    P        L  +   D+ ++ + P  +  
Sbjct: 115 -----------------------VEIPPNLPS------SLVELRIHDNRIR-KVPKGVFS 144

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
              N++ + +  N L                       F G                   
Sbjct: 145 GLRNMNCIEMGGNPLE--------------NSGFEPGAFDG------------------L 172

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPK-SLSNCSRLEGLYMSDNN 480
            L YL +SE  L G     K+    L  LHLD N     I    L   S+L  L +  N 
Sbjct: 173 KLNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 481 LYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS-------GS 532
           +   I    L  L +L ++ + +N L   +P     L  L+++ L  NNI+         
Sbjct: 229 I-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 533 LPSCSSHSTIQQVHLSKNML-YGPLKYGTFFNRSSIVTLDLSYN 575
           +      +    + L  N + Y  ++  TF   +  + +     
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 6e-15
 Identities = 55/232 (23%), Positives = 89/232 (38%), Gaps = 24/232 (10%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
           +   L L  N    L    F     L+ L  L L  N  +    K+ S   +L+ LY+S 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKG---LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 479 NNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL--PSC 536
           N+L   IP  L   SSL ++ +  N ++      F  L  +  +++  N +  S   P  
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 537 SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLI 595
                +  + +S+  L G +         ++  L L +N     I    + R  +L  L 
Sbjct: 169 FDGLKLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLG 223

Query: 596 LANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS------LHNN 641
           L +N +       L  L  LR + L NN L  ++P  L +        LH N
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 51/319 (15%), Positives = 97/319 (30%), Gaps = 74/319 (23%)

Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQG 507
            L L  N  +            L  L + +N +   I  +    L  L  + ++ NHL  
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVE 116

Query: 508 PIPLEFCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNMLY-GPLKYGTFFNR 564
            IP      + L  L + +N I   +P    S    +  + +  N L     + G F   
Sbjct: 117 -IPPN--LPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
             +  L +S    +  IP   +    L  L L +N ++      L    +L  + L +N 
Sbjct: 173 K-LNYLRISEAKLT-GIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
           +            + N          + +                               
Sbjct: 229 I----------RMIENG---------SLSF------------------------------ 239

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN------ 738
               L  +  + L  NKL+  +P  +  L  ++ +    NN+T V    F  +       
Sbjct: 240 ----LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 739 QVESLDVSHNNL-NGKIPP 756
               + + +N +   ++ P
Sbjct: 295 YYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 63/306 (20%), Positives = 108/306 (35%), Gaps = 52/306 (16%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH-----WHLDALH 394
           D  L+D  ++++  E      K   +L  LVL NN +S      I          L  L+
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-----IHEKAFSPLRKLQKLY 108

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLH 451
           +SKN     IP  +             +L  L + +N    +   +FS    LR +  + 
Sbjct: 109 ISKNHLV-EIPPNL---PS--------SLVELRIHDNRIRKVPKGVFSG---LRNMNCIE 153

Query: 452 LDANYFT-GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP 510
           +  N            +  +L  L +S+  L   IP  L    +LN++ +  N +Q  I 
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPKDL--PETLNELHLDHNKIQA-IE 209

Query: 511 LE-FCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNMLYG-PLKYGTFFNRSS 566
           LE   + + L  L L  N I   +   S S   T++++HL  N L   P       +   
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVP---AGLPDLKL 265

Query: 567 IVTLDLSYNSFSGNIP-------YWIERLIRLRYLILANNNLEGEV--PNQLCGLKQLRL 617
           +  + L  N+ +  +         +  +      + L NN +      P     +     
Sbjct: 266 LQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 618 IDLSNN 623
           I   N 
Sbjct: 325 IQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 52/266 (19%), Positives = 100/266 (37%), Gaps = 30/266 (11%)

Query: 518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
           +L ++  S+  +  ++P   S  T   + L  N +   L+   F     +  L L  N  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDT-TLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKI 90

Query: 578 SGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
           S         L +L+ L ++ N+L  E+P  L     L  + + +N +     G      
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 638 ------LHNNG-DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLN 690
                 +  N  +N G     F+  +     +  + L      +  T           LN
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET-----------LN 196

Query: 691 KMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNN 749
           +++   L  NK+   I  +   + + +  L   HN +  +   S S L  +  L + +N 
Sbjct: 197 ELH---LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 750 LNGKIPPQLVELNALVVFSVAHNNLS 775
           L+ ++P  L +L  L V  +  NN++
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 53/312 (16%), Positives = 92/312 (29%), Gaps = 76/312 (24%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN------------ 136
           L        Q L  L L +N I+  +        S L KL+ L + +N            
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKIS-KIHEKAF---SPLRKLQKLYISKNHLVEIPPNLPSS 124

Query: 137 -----LFNNSIFS----SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSS 187
                + +N I        +GL ++  + +G N L+ S       D    L  L +  + 
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAK 183

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
           L   I K      +L  L + + ++      + E L R   L  L +G N +R       
Sbjct: 184 LT-GIPKD--LPETLNELHLDHNKIQAI---ELEDLLRYSKLYRLGLGHNQIR------- 230

Query: 248 LNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPE 306
                  I +  L  L ++  L L  N+   +P       +L  L+V     N I     
Sbjct: 231 ------MIENGSLSFLPTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNNITKVGV 281

Query: 307 SS----HSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN 362
           +          +     +SL  + +                          E      + 
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYW-----------------------EVQPATFRC 318

Query: 363 NPNLSTLVLRNN 374
             +   +   N 
Sbjct: 319 VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 696 DLSCNKLTGEIPP-QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           DL  N ++ E+       L ++ AL   +N ++ +   +FS L +++ L +S N+L  +I
Sbjct: 60  DLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117

Query: 755 PPQLVELNALVVFSVAHNNLSA 776
           PP L   ++LV   +  N +  
Sbjct: 118 PPNL--PSSLVELRIHDNRIRK 137

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL-NGKI 754
            +S N L  EIPP     +++  L    N +  V    FS L  +  +++  N L N   
Sbjct: 108 YISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 755 PPQLVELNALVVFSVAHNNLSA 776
            P   +   L    ++   L+ 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTG 186

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 47/211 (22%), Positives = 77/211 (36%), Gaps = 13/211 (6%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
             + + L  N    +    F      R L  L L +N        + +  + LE L +SD
Sbjct: 33  ASQRIFLHGNRISHVPAASFR---ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 479 NNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLE-FCQLNYLEILDLSENNISGSLPSC 536
           N    ++       L  L+ + +    LQ  +    F  L  L+ L L +N +  +LP  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 537 --SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYL 594
                  +  + L  N +   +    F    S+  L L  N  +   P+    L RL  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 595 ILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
            L  NNL       L  L+ L+ + L++N  
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSI-FSSL 146
            + A+     + L  L L SN +A  ++       +GL+ L+ L+L  N    S+  ++ 
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLA-RIDAAA---FTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLK 203
            GL  L TL L    L+  +           L+ L L  ++L  ++      F    +L 
Sbjct: 102 HGLGRLHTLHLDRCGLQ-ELG-PGLFRGLAALQYLYLQDNALQ-AL--PDDTFRDLGNLT 156

Query: 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHL 263
            L +   R+  ++ +       L  L  L +  N +              ++       L
Sbjct: 157 HLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVA-------------HVHPHAFRDL 200

Query: 264 TSIERLFLSYNQFQ-IPFSLEPFFNLSKLK 292
             +  L+L  N    +P        L  L+
Sbjct: 201 GRLMTLYLFANNLSALPTEA--LAPLRALQ 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 29/194 (14%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
           +++A+  T    LE L L  N     V+        GL +L  L+L R            
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
           GL++L+ L L  N L+ ++   +T  +  NL  L L  + +     ++     SL RL +
Sbjct: 127 GLAALQYLYLQDNALQ-ALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 208 QNGRV----DGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHL 263
              RV      A  D       LG L  L++  N+L               + +  L  L
Sbjct: 185 HQNRVAHVHPHAFRD-------LGRLMTLYLFANNLS-------------ALPTEALAPL 224

Query: 264 TSIERLFLSYNQFQ 277
            +++ L L+ N + 
Sbjct: 225 RALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 49/279 (17%), Positives = 74/279 (26%), Gaps = 77/279 (27%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGY 159
            + + L  N I+                L +L L  N+      ++  GL+ L  L L  
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 160 NRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDD 219
           N    S+D   T      L  L LD   L                  +  G   G     
Sbjct: 90  NAQLRSVD-PATFHGLGRLHTLHLDRCGLQ----------------ELGPGLFRG----- 127

Query: 220 EEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP 279
                 L  LQ L++  N L+              +       L ++  LFL  N+    
Sbjct: 128 ------LAALQYLYLQDNALQ-------------ALPDDTFRDLGNLTHLFLHGNRIS-- 166

Query: 280 FSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN 337
            S+    F  L  L                            + L  + +    P    +
Sbjct: 167 -SVPERAFRGLHSLDR--------------------------LLLHQNRVAHVHPHAFRD 199

Query: 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
              L  +    +NL    P   L     L  L L +N  
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 48/267 (17%), Positives = 87/267 (32%), Gaps = 43/267 (16%)

Query: 514 CQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 573
           C           +  +  ++P     ++ Q++ L  N +   +   +F    ++  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIPAAS-QRIFLHGNRI-SHVPAASFRACRNLTILWLH 64

Query: 574 YNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDLSNNNLFGQIPGC 632
            N  +         L  L  L L++N     V      GL +L  + L    L    PG 
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 633 LDN-TSLH--NNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPL 689
                +L      DN   + P          F     L                      
Sbjct: 125 FRGLAALQYLYLQDNALQALPD-------DTFRDLGNLTH-------------------- 157

Query: 690 NKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
                + L  N+++  +P +    L ++  L    N +  V P +F +L ++ +L +  N
Sbjct: 158 -----LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 749 NLNGKIPPQ-LVELNALVVFSVAHNNL 774
           NL+  +P + L  L AL    +  N  
Sbjct: 212 NLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 519 LEILDLSENNISGSLPSCSSH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 576
            + + L  N IS  +P+ S      +  + L  N+L   +    F   + +  LDLS N+
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 577 FSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP-GCLD 634
              ++       L RL  L L    L+   P    GL  L+ + L +N L   +P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150

Query: 635 NTS------LHNNG-DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGK 687
           +        LH N   +V   A           F G   L++                  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERA-----------FRGLHSLDR------------------ 181

Query: 688 PLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
                  + L  N++   + P     L  +  L    NNL+ +   + + L  ++ L ++
Sbjct: 182 -------LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 747 HNNLN 751
            N   
Sbjct: 234 DNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 11/145 (7%)

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC--SSHST 541
            IPA    +       +  N +       F     L IL L  N ++  + +   +  + 
Sbjct: 29  GIPAASQRIF------LHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNN 600
           ++Q+ LS N     +   TF     + TL L        +       L  L+YL L +N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 601 LEGEVPNQLCGLKQLRLIDLSNNNL 625
           L+    +    L  L  + L  N +
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 42/219 (19%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           ++   + L  N  S            L  L L +N L         GL  L  +DLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 625 LFGQIP-GCLDN----TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE 679
               +            +LH +                    +GP +             
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDR------------CGLQE--LGPGLFRG---------- 127

Query: 680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLN 738
                    L  +  + L  N L   +P      L N+  L    N ++ V   +F  L+
Sbjct: 128 ---------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 739 QVESLDVSHNNLNGKIPPQ-LVELNALVVFSVAHNNLSA 776
            ++ L +  N +   + P    +L  L+   +  NNLSA
Sbjct: 178 SLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSA 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 51/243 (20%)

Query: 246 LYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEI-- 301
           L+ N+++ ++ ++      ++  L+L  N       ++   F  L+ L+      N    
Sbjct: 39  LHGNRIS-HVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 302 YVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK 361
            V+P + H      +L ++ L    +    P        L+ +   D+ L+   P+   +
Sbjct: 95  SVDPATFHGLG---RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 362 NNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF 421
           +  NL+ L L  N +S                 V +  F+                 G  
Sbjct: 151 DLGNLTHLFLHGNRIS----------------SVPERAFR-----------------GLH 177

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
           +L+ L+L +N    +H   F     L +L  L+L AN  +    ++L+    L+ L ++D
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRD---LGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 479 NNL 481
           N  
Sbjct: 235 NPW 237

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 6e-16
 Identities = 50/291 (17%), Positives = 82/291 (28%), Gaps = 29/291 (9%)

Query: 329 ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW 388
           A   +       LE +               +  + +L  L +R   +            
Sbjct: 33  AADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL 92

Query: 389 ---HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFS----KK 441
               L  L +      G  P  +             +L  L L   S   +       ++
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGP-------DLNILNLRNVSWATRDAWLAELQQ 145

Query: 442 NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI-------PARLGNLSS 494
                L  L +   +      + +     L  L +SDN   G         P +   L  
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNML 552
           L           G           L+ LDLS N++  +    SC   S +  ++LS   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 553 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603
              +  G     + +  LDLSYN      P   + L ++  L L  N    
Sbjct: 266 KQ-VPKGLP---AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 20/225 (8%)

Query: 418 MGCFNLEYLVLSENSLHGQLFS---KKNYLRKLARLHLDANYFTGEIPKSLSNCS--RLE 472
           +   +L+ L +    +  ++     +   +  L  L L+    TG  P  L   +   L 
Sbjct: 65  IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 473 GLYMSDNNLYG--NIPARLGNLS--SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN 528
            L + + +        A L       L  + +A  H       +      L  LDLS+N 
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 529 ISGSLPSCSSH-----STIQQVHLSKNMLY--GPLKYGTFFNRSSIVTLDLSYNSFSGNI 581
             G     S+       T+Q + L    +     +       R  +  LDLS+NS     
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 582 PYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
                +   +L  L L+   L+ +VP  L    +L ++DLS N L
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 6e-14
 Identities = 55/289 (19%), Positives = 95/289 (32%), Gaps = 33/289 (11%)

Query: 280 FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339
            SLE        +   G+F +I         +  +  + +  +    +         +  
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDI-----IKSLSLKRLTVRAARIPSRILFGALRVLGISG- 96

Query: 340 DLELVDFSDSNLKGE-FPNWLLKNNPNLSTLVLRNNSLSG--PFQTPIQPHW--HLDALH 394
            L+ +   +  + G   P  L    P+L+ L LRN S +    +   +Q      L  L 
Sbjct: 97  -LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL-------HGQLFSKKNYLRKL 447
           +++     N   E    FP         L  L LS+N               K   L+ L
Sbjct: 156 IAQAHS-LNFSCEQVRVFP--------ALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA-RLGNLSSLNDIMMASNHLQ 506
           A  +      +G      +   +L+GL +S N+L     A      S LN + ++   L+
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 507 GPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGP 555
               +       L +LDLS N +    PS      +  + L  N     
Sbjct: 267 Q---VPKGLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 50/301 (16%), Positives = 89/301 (29%), Gaps = 37/301 (12%)

Query: 488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS----SHSTIQ 543
             G  S    +             +  +   L+ L +    I   +   +      S +Q
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 544 QVHLSKNMLYGP-LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE----RLIRLRYLILAN 598
           ++ L    + G             +  L+L   S++    +  E        L+ L +A 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT 658
            +       Q+     L  +DLS+N   G+    L +         +   A         
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKFPTLQVLALRNA----- 211

Query: 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIR 717
               G        S +                ++ G+DLS N L            + + 
Sbjct: 212 ----GMETPSGVCSALAAA-----------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 718 ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777
           +LN S   L  V     + L     LD+S+N L+    P   EL  +   S+  N    +
Sbjct: 257 SLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

Query: 778 E 778
           E
Sbjct: 312 E 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 52/287 (18%), Positives = 91/287 (31%), Gaps = 25/287 (8%)

Query: 99  QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLG 158
            LE L    +  A   +   + +   L +L +               + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 159 YNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI--SILKSIAAF--TSLKRLSIQNGRVDG 214
              + G+           +L  L L   S     + L  +  +    LK LSI       
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 215 ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYN 274
                 E +     L  L +  N   G             IS+   +   +++ L L   
Sbjct: 164 F---SCEQVRVFPALSTLDLSDNPELGERG---------LISALCPLKFPTLQVLALRNA 211

Query: 275 QFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFP 332
             + P  +         +L+      N +     +     P  QL S++LS + +    P
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTGLK-QVP 269

Query: 333 KFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGP 379
           K L  +  L ++D S + L        L   P +  L L+ N     
Sbjct: 270 KGLPAK--LSVLDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 54/315 (17%), Positives = 93/315 (29%), Gaps = 39/315 (12%)

Query: 224 CRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFS 281
           C      EL+ GG  L   L    ++        + +I   S++RL +   +   +I F 
Sbjct: 30  CLGAADVELYGGGRSLEYLL--KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 282 LEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDL 341
                 +S L+  +                     LE++ ++G+           + + L
Sbjct: 88  ALRVLGISGLQELT---------------------LENLEVTGTAPPPLLEATGPDLNIL 126

Query: 342 ELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQ 401
            L + S +              P L  L +            ++    L  L +S N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 402 GNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFT 458
           G   L       +   +    L+ L L      +  G   +      +L  L L  N   
Sbjct: 187 GERGL-----ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 459 GEIPKSL-SNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN 517
                      S+L  L +S   L          LS L+   ++ N L    P    +L 
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDR-NPS-PDELP 296

Query: 518 YLEILDLSENNISGS 532
            +  L L  N    S
Sbjct: 297 QVGNLSLKGNPFLDS 311

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 33/266 (12%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
              F +    +L   ++            + L+ +  +    +   +     +  L ++ 
Sbjct: 20  DDAFAETIKDNLKKKSVTD------AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVT 71

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            L L  N+L   I   + L N  NL  L LD +   +  L S+     LK LS+++  + 
Sbjct: 72  KLFLNGNKLT-DI---KPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLKSLSLEHNGI- 124

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLR-----GTLPCLYLNQLTGN-ISS-SPLIHLTSI 266
                D  GL  L  L+ L++G N +        L  L    L  N IS   PL  LT +
Sbjct: 125 ----SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180

Query: 267 ERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326
           + L+LS N       L     L  L V      E   +P +  S          ++  +D
Sbjct: 181 QNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN----TVKNTD 233

Query: 327 IHATFPKFLYNQHDLELVDFSDSNLK 352
                P+ + +  D E  +      +
Sbjct: 234 GSLVTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 27/266 (10%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
                      L+  S++            +D +  + +  +    ++            
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQ-----------Y 66

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
             N+  L L+ N L          L+ L  L LD N    ++  SL +  +L+ L +  N
Sbjct: 67  LPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHN 122

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +  +I   L +L  L  + + +N +     L   +L  L+ L L +N IS  +   +  
Sbjct: 123 GI-SDING-LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGL 177

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
           + +Q ++LSKN +             ++  L+L               L+    +   + 
Sbjct: 178 TKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNL 625
           +L    P  +         ++  +  
Sbjct: 235 SL--VTPEIISDDGDYEKPNVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 34/219 (15%)

Query: 170 ETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL 229
            + D F       L   S  ++   +     S+ ++   N  +        +G+  L ++
Sbjct: 18  FSDDAFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNV 70

Query: 230 QELHMGGNDLRGTLPCLYLNQLTG------NISS-SPLIHLTSIERLFLSYNQFQIPFSL 282
            +L + GN L    P   L  L         +   S L  L  ++ L L +N       +
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS---DI 127

Query: 283 EPFFNLSKLKVFSGEFNEIY-VEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDL 341
               +L +L+      N+I  +   S  +     +L+++SL  + I  +    L     L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLT-----KLDTLSLEDNQI--SDIVPLAGLTKL 180

Query: 342 ELVDFSD---SNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
           + +  S    S+L+       L    NL  L L +    
Sbjct: 181 QNLYLSKNHISDLRA------LAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 39/291 (13%), Positives = 91/291 (31%), Gaps = 51/291 (17%)

Query: 465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL 524
               +      +   ++   +      L+S++ I+  ++ ++    ++   L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 584
           + N ++  +   ++   +  + L +N +       +  +   + +L L +N  S +I   
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 585 IERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLH--NNG 642
           +  L +L  L L NN +  ++   L  L +L  + L +N +   I      T L      
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 186

Query: 643 DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL 702
            N  S                                         L  +  ++L   + 
Sbjct: 187 KNHISDLRAL----------------------------------AGLKNLDVLELFSQEC 212

Query: 703 TGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
             +       L     +  +  +L  V P   S+    E  +V  +     
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 40/273 (14%), Positives = 85/273 (31%), Gaps = 31/273 (11%)

Query: 258 SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQL 317
                     +  L                L+ +       ++I       +       +
Sbjct: 18  FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLP----NV 70

Query: 318 ESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
             + L+G+ +    P  L N  +L  +   ++ +K +  +  LK+   L +L L +N +S
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGIS 125

Query: 378 GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL 437
                 +     L++L++  N       L                L+ L L +N +    
Sbjct: 126 DI--NGLVHLPQLESLYLGNNKITDITVLS-----------RLTKLDTLSLEDNQISD-- 170

Query: 438 FSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLND 497
                 L KL  L+L  N+ + ++ ++L+    L+ L +              NL   N 
Sbjct: 171 IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 498 IMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
           +      L  P  +        E  ++  +   
Sbjct: 229 VKNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 35/211 (16%), Positives = 78/211 (36%), Gaps = 43/211 (20%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           +  +  +L   S +  +      L  +  +I  N++++  V   +  L  +  + L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNK 79

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
           L   I    +  +L                     +     +           K++S   
Sbjct: 80  L-TDIKPLANLKNL------------------GWLFLDENKV-----------KDLSSL- 108

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLD 744
             K L K+  + L  N ++ +I   +  L  + +L   +N +T +     S L ++++L 
Sbjct: 109 --KDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 162

Query: 745 VSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
           +  N ++  I P L  L  L    ++ N++S
Sbjct: 163 LEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 38/256 (14%), Positives = 93/256 (36%), Gaps = 57/256 (22%)

Query: 515 QLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 574
                   +L + +++    + +  ++I Q+  + + +             ++  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 575 NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD 634
           N  + +I   +  L  L +L L  N ++ ++ + L  LK+L+ + L +N +   I G + 
Sbjct: 78  NKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI-SDINGLVH 132

Query: 635 NTSL------HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKP 688
              L      +N   ++                   ++L +                   
Sbjct: 133 LPQLESLYLGNNKITDI-------------------TVLSR------------------- 154

Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
           L K+  + L  N+++ +I P +  LT ++ L  S N+++ +     + L  ++ L++   
Sbjct: 155 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ 210

Query: 749 NLNGKIPPQLVELNAL 764
               K       L   
Sbjct: 211 ECLNKPINHQSNLVVP 226

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
           +     ++ L +++ +            +SGLS L+ L +      +    +L+GL+SL 
Sbjct: 62  IEYAHNIKDLTINNIHAT------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            L + ++       +   ++    +  + L Y+   I+ +  +     LK L+IQ   V 
Sbjct: 116 LLDISHSAH--DDSILTKINTLPKVNSIDLSYNGA-ITDIMPLKTLPELKSLNIQFDGV- 171

Query: 214 GALGDDEEGLCRLGHLQELHMGGN 237
                D  G+     L +L+    
Sbjct: 172 ----HDYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 90  NASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGL 149
           N + ++    LE L +   ++     +  +  LSGL+ L LL++  +  ++SI + +  L
Sbjct: 80  NYNPISGLSNLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209
             + ++ L YN     I     L     L+ L + +    +   + I  F  L +L   +
Sbjct: 136 PKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFD--GVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 26/179 (14%)

Query: 123 SGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
           + ++ L  + L      +   + +    +++ L++              +   +NLE L 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY----NPISGLSNLERLR 94

Query: 183 LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT 242
           +    +    + +++  TSL  L I +   D +       +  L  +  + +  N     
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS---ILTKINTLPKVNSIDLSYN----- 146

Query: 243 LPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301
                   +T      PL  L  ++ L + ++            +  KL         I
Sbjct: 147 ------GAIT---DIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 22/183 (12%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASN 503
            +      L  +        + +  + L  + +++ N+  ++   +    ++ D+ + + 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNI 76

Query: 504 HLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH-STIQQVHLSKNMLYGPLKYGTFF 562
           H     P+    L+ LE L +   +++       S  +++  + +S +            
Sbjct: 77  HATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKIN 133

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
               + ++DLSYN    +I   ++ L  L+ L +  + +       +    +L  +   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 623 NNL 625
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
           L+ +  + +    +T +  P +  LT++  L+ SH+     I    + L +V S+D+S+N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 749 NLNGKIPPQLVELNALVVFSVAHNNLS 775
                I P L  L  L   ++  + + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 8/131 (6%)

Query: 510 PLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNML--YGPLKYGTFFNRSSI 567
            +   Q+N L  + L+  N++  L        I+ + ++      Y P+        S++
Sbjct: 37  NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNPIS-----GLSNL 90

Query: 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627
             L +     + +    +  L  L  L ++++  +  +  ++  L ++  IDLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 628 QIPGCLDNTSL 638
            I        L
Sbjct: 151 DIMPLKTLPEL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 28/183 (15%), Positives = 62/183 (33%), Gaps = 31/183 (16%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
           +L Y+ L+  ++     +   Y   +  L ++  + T      +S  S LE L +   ++
Sbjct: 45  SLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV 100

Query: 482 YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST 541
             +    L  L+SL  + ++ +     I  +   L  +  +DLS N     +        
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP------ 154

Query: 542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNL 601
                L                   + +L++ ++         IE   +L  L   +  +
Sbjct: 155 -----LKTL--------------PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 602 EGE 604
            G+
Sbjct: 194 GGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
            ++    T    P I  L+N+  L     ++T     + S L  +  LD+SH+  +  I 
Sbjct: 72  TINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 756 PQLVELNALVVFSVAHNNL 774
            ++  L  +    +++N  
Sbjct: 130 TKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 44/192 (22%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
           +S+  + L+  + + ++   IE    ++ L + N +     P  + GL  L  + +   +
Sbjct: 44  NSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99

Query: 625 LFGQIPGCLDN----TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEI 680
           +       L      T L  +      S  T                             
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT------------------------- 134

Query: 681 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV 740
                   L K+  +DLS N    +I P +  L  +++LN   + +         +  ++
Sbjct: 135 --------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKL 183

Query: 741 ESLDVSHNNLNG 752
             L      + G
Sbjct: 184 NQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 39/256 (15%), Positives = 84/256 (32%), Gaps = 80/256 (31%)

Query: 123 SGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
           S         LG++   N    + A ++SL  ++L    +   +     ++   N++DLT
Sbjct: 20  STFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVT-DL---TGIEYAHNIKDLT 72

Query: 183 LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT 242
           +  +++H +    I+  ++L+RL I    V     D    L  L  L  L +  +     
Sbjct: 73  I--NNIHATNYNPISGLSNLERLRIMGKDVTS---DKIPNLSGLTSLTLLDISHSAHD-- 125

Query: 243 LPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIY 302
                      +   + +  L  +  + LSYN   I   + P   L              
Sbjct: 126 -----------DSILTKINTLPKVNSIDLSYNG-AIT-DIMPLKTLP------------- 159

Query: 303 VEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN 362
                        +L+S+++    +                      + +G      +++
Sbjct: 160 -------------ELKSLNIQFDGV---------------------HDYRG------IED 179

Query: 363 NPNLSTLVLRNNSLSG 378
            P L+ L   + ++ G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
           +N +  + L+   +T ++   I    NI+ L  ++ + T   P   S L+ +E L +   
Sbjct: 43  MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 749 NLNGKIPPQLVELNALVVFSVAHNNLS 775
           ++     P L  L +L +  ++H+   
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 25/216 (11%), Positives = 59/216 (27%), Gaps = 65/216 (30%)

Query: 316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
            L  ++L+  ++  T    +   H+++ +  ++ +     P   +    NL  L +    
Sbjct: 45  SLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKD 99

Query: 376 LSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG 435
           ++      +                             S L     +L  L +S ++   
Sbjct: 100 VTSDKIPNL-----------------------------SGLT----SLTLLDISHSAH-- 124

Query: 436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL 495
                                    I   ++   ++  + +S N    +I   L  L  L
Sbjct: 125 ----------------------DDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPEL 161

Query: 496 NDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG 531
             + +  + +     +E      L  L      I G
Sbjct: 162 KSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 29/225 (12%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
                 + TL      +        +E +  L+ L  L L  N   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGVT------TIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            L L  N LK ++     +    +++ L L  +   I+ +  +A  ++L+ L +   ++ 
Sbjct: 89  ELELSGNPLK-NV---SAIAGLQSIKTLDLTST--QITDVTPLAGLSNLQVLYLDLNQI- 141

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTG------NISS-SPLIHLTSI 266
                +   L  L +LQ L +G   +    P   L++LT        IS  SPL  L ++
Sbjct: 142 ----TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNL 197

Query: 267 ERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHST 311
             + L  NQ      + P  N S L + +     I  +P   ++ 
Sbjct: 198 IEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 38/291 (13%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
                 +    +N+            + L  +  L+             +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNVT------DTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLT-LDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA 215
           L  N++         L    NL  +T L+ S   +  + +IA   S+K L + + ++   
Sbjct: 70  LKDNQIT-------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--- 119

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTG------NISS-SPLIHLTSIER 268
              D   L  L +LQ L++  N +    P   L  L         +S  +PL +L+ +  
Sbjct: 120 --TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 269 LFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIH 328
           L    N+      + P  +L  L     + N+I      ++++     L  V+L+   I 
Sbjct: 178 LKADDNKIS---DISPLASLPNLIEVHLKNNQISDVSPLANTS----NLFIVTLTNQTI- 229

Query: 329 ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGP 379
            T     YN + +        +     P  +  +N   ++  L  N  S  
Sbjct: 230 -TNQPVFYNNNLVVPNVVKGPSGAPIAPATIS-DNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 41/248 (16%), Positives = 96/248 (38%), Gaps = 32/248 (12%)

Query: 139 NNSI--FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSI 196
             +I        L++   ++ G + +  +     T  +   +  L+       ++ ++ +
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDT----VTQADLDGITTLSA--FGTGVTTIEGV 59

Query: 197 AAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR-----GTLPCLYLNQL 251
               +L  L +++ ++      D   L  L  + EL + GN L+       L  +    L
Sbjct: 60  QYLNNLIGLELKDNQI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 252 TGN--ISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSH 309
           T       +PL  L++++ L+L  NQ     ++ P   L+ L+  S    ++      ++
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTPLAN 171

Query: 310 STTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTL 369
            +    +L ++    + I  +    L +  +L  V   ++ +    P   L N  NL  +
Sbjct: 172 LS----KLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIV 222

Query: 370 VLRNNSLS 377
            L N +++
Sbjct: 223 TLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 20/225 (8%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
            +  L      +         YL  L  L L  N  T ++   L N +++  L +S N L
Sbjct: 42  GITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPL 97

Query: 482 YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST 541
             N+ A +  L S+  + + S  +    PL    L+ L++L L  N I+ ++   +  + 
Sbjct: 98  -KNVSA-IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQIT-NISPLAGLTN 152

Query: 542 IQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
           +Q + +    +    PL      N S + TL    N  S +I   +  L  L  + L NN
Sbjct: 153 LQYLSIGNAQVSDLTPLA-----NLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNN 205

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN 644
            +    P  L     L ++ L+N  +  Q     +N  + N    
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 20/159 (12%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
           +   Q ++TL L S  I        +  L+GLS L++L L  N   N   S LAGL++L+
Sbjct: 103 IAGLQSIKTLDLTSTQI------TDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            LS+G  ++   +     L N + L  L  D +   IS +  +A+  +L  + ++N ++ 
Sbjct: 155 YLSIGNAQVS-DL---TPLANLSKLTTLKADDN--KISDISPLASLPNLIEVHLKNNQI- 207

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
                D   L    +L  + +    +    P  Y N L 
Sbjct: 208 ----SDVSPLANTSNLFIVTLTNQTIT-NQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 36/266 (13%), Positives = 80/266 (30%), Gaps = 27/266 (10%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419
                N   +    ++++            +  L            ++            
Sbjct: 15  DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGVQ-----------Y 61

Query: 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
             NL  L L +N +     +    L K+  L L  N        +++    ++ L ++  
Sbjct: 62  LNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTST 117

Query: 480 NLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539
            +    P  L  LS+L  + +  N +    PL    L  L+ L +    +S  L   ++ 
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-DLTPLANL 172

Query: 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599
           S +  +    N +          +  +++ + L  N  S   P  +     L  + L N 
Sbjct: 173 SKLTTLKADDNKI---SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

Query: 600 NLEGEVPNQLCGLKQLRLIDLSNNNL 625
            +  +       L    ++   +   
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 62/329 (18%), Positives = 112/329 (34%), Gaps = 54/329 (16%)

Query: 165 SIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLC 224
           +I+V        N   +    S+  ++   + A    +  LS     V        EG+ 
Sbjct: 8   AINVIFPDPALANAIKIAAGKSN--VTDTVTQADLDGITTLSAFGTGVT-----TIEGVQ 60

Query: 225 RLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP 284
            L +L  L             L  NQ+T     +PL +LT I  L LS N  +   ++  
Sbjct: 61  YLNNLIGLE------------LKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSA 102

Query: 285 FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELV 344
              L  +K       +I      +  +     L+ + L  + I  T    L    +L+ +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLS----NLQVLYLDLNQI--TNISPLAGLTNLQYL 156

Query: 345 DFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNI 404
              ++ +    P   L N   L+TL   +N +S    +P+    +L  +H+  N      
Sbjct: 157 SIGNAQVSDLTP---LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS 211

Query: 405 PLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS 464
           PL               NL  + L+  ++  Q     N L          N   G     
Sbjct: 212 PLA-----------NTSNLFIVTLTNQTITNQPVFYNNNLVVP-------NVVKGPSGAP 253

Query: 465 LSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
           ++  +  +    +  NL  N+ + + N+S
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 46/297 (15%), Positives = 91/297 (30%), Gaps = 60/297 (20%)

Query: 465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL 524
               +    +    +N+   +     +L  +  +      +     ++   LN L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYW 584
            +N I+  L    + + I ++ LS N L             SI TLDL+    +   P  
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGNPL---KNVSAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 585 IERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL-----FGQIPGCLDNTSLH 639
           +  L  L+ L L  N +   +   L GL  L+ + + N  +        +   L      
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSK-LTTLKAD 181

Query: 640 NNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 699
           +N                         +     +               L  +  V L  
Sbjct: 182 DNK------------------------ISDISPL-------------ASLPNLIEVHLKN 204

Query: 700 NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP 756
           N+++   P  +   +N+  +  ++  +T       +NL      +V        I P
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 21/210 (10%)

Query: 566 SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           + + +    ++ +  +      L  +  L      +   +   +  L  L  ++L +N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 626 FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685
              +    + T +              + N         + L+  +++  T+ +I+    
Sbjct: 76  -TDLAPLKNLTKITEL---------ELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDV 745
              L+ +  + L  N++T  I P +  LTN++ L+  +  ++ + P   +NL+++ +L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 746 SHNNLNGKIPPQLVELNALVVFSVAHNNLS 775
             N ++  I P L  L  L+   + +N +S
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 32/252 (12%), Positives = 95/252 (37%), Gaps = 27/252 (10%)

Query: 515 QLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 574
            L     +   ++N++    + +    I  +      +            ++++ L+L  
Sbjct: 17  ALANAIKIAAGKSNVT-DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 575 NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD 634
           N  + ++   ++ L ++  L L+ N L+    + + GL+ ++ +DL++  +   +     
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQI-TDVTPLAG 127

Query: 635 NTSLH--NNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKM 692
            ++L       N  ++                  L   + +     ++S       L+K+
Sbjct: 128 LSNLQVLYLDLNQITNISPLAG------------LTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 693 YGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752
             +    NK++ +I P +  L N+  ++  +N ++ V P   +N + +  + +++  +  
Sbjct: 176 TTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 753 KIPPQLVELNAL 764
           +       L   
Sbjct: 232 QPVFYNNNLVVP 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 9e-14
 Identities = 59/335 (17%), Positives = 104/335 (31%), Gaps = 70/335 (20%)

Query: 464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523
           SLS  S    +    +  Y +  +           +   N  +    L+ C +N    L 
Sbjct: 12  SLSQNSFYNTI----SGTYADYFSAWDKWEKQA--LPGENRNEAVSLLKECLINQFSELQ 65

Query: 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRS--SIVTLDLSYNSFSGNI 581
           L+  N+S SLP  +    I  + +++N L               S+  LD   N  S  +
Sbjct: 66  LNRLNLS-SLPD-NLPPQITVLEITQNAL-------ISLPELPASLEYLDACDNRLS-TL 115

Query: 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN-TSLHN 640
           P   E    L++L + NN L   +P     L+ +   +  NN L   +P    +   L  
Sbjct: 116 P---ELPASLKHLDVDNNQLT-MLPELPALLEYI---NADNNQL-TMLPELPTSLEVLSV 167

Query: 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN 700
                         N+ T     P  LE                          +D+S N
Sbjct: 168 RN------------NQLTFLPELPESLEA-------------------------LDVSTN 190

Query: 701 KLTGEIPPQIGKLTNIR----ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP 756
            L   +P    +  +            N +T  IP +  +L+   ++ +  N L+ +I  
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 757 QLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPC 791
            L +  A   +       S ++             
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 56/352 (15%), Positives = 102/352 (28%), Gaps = 82/352 (23%)

Query: 431 NSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490
           +  +   FS  +   K A    + N     + + L   ++   L ++  NL  ++P  L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL-SSLPDNLP 79

Query: 491 -NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK 549
             ++ L    +  N L   +P     L   E LD  +N +S +LP               
Sbjct: 80  PQITVLE---ITQNALI-SLPELPASL---EYLDACDNRLS-TLPE-------------- 117

Query: 550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQL 609
                          +S+  LD+  N  +  +P   E    L Y+   NN L   +P   
Sbjct: 118 -------------LPASLKHLDVDNNQLT-MLP---ELPALLEYINADNNQLT-MLPELP 159

Query: 610 CGLKQLRLIDLSNNNLFGQIPGCLDN-TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILE 668
             L+ L    + NN L   +P   ++  +L  +             N   +  +    + 
Sbjct: 160 TSLEVL---SVRNNQL-TFLPELPESLEALDVST------------NLLES--LPAVPVR 201

Query: 669 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG 728
              S                           N++T  IP  I  L     +    N L+ 
Sbjct: 202 NHHS----------------EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERN 780
            I  S S        D     +   +           +           +++
Sbjct: 245 RIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 9e-12
 Identities = 53/302 (17%), Positives = 92/302 (30%), Gaps = 74/302 (24%)

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
           N    L   S  N I              + +     +   + N     L  C  +    
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFS----AWDKWEKQALPGENRNEAVSLLKECLINQ-FS 62

Query: 544 QVHLSKNMLYGPLKYGTFFNRS---SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNN 600
           ++ L++  L       +    +    I  L+++ N+   ++P        L YL   +N 
Sbjct: 63  ELQLNRLNL-------SSLPDNLPPQITVLEITQNALI-SLPELPA---SLEYLDACDNR 111

Query: 601 LEGEVPNQLCGLKQLRLIDLSNNNL--FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT 658
           L   +P     LK L   D+ NN L    ++P  L+  +  N              N+ T
Sbjct: 112 LS-TLPELPASLKHL---DVDNNQLTMLPELPALLEYINADN--------------NQLT 153

Query: 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRA 718
                P+ LE                          + +  N+LT  +P     L     
Sbjct: 154 MLPELPTSLEV-------------------------LSVRNNQLT-FLPELPESLEA--- 184

Query: 719 LNFSHNNLTGVIPVSFSNLNQVES----LDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
           L+ S N L   +P      +  E          N +   IP  ++ L+      +  N L
Sbjct: 185 LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 775 SA 776
           S+
Sbjct: 243 SS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 46/270 (17%), Positives = 82/270 (30%), Gaps = 45/270 (16%)

Query: 240 RGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEF 298
           +  LP    N+     S      +     L L+      +P +L P   ++ L++     
Sbjct: 38  KQALPGENRNEAV---SLLKECLINQFSELQLNRLNLSSLPDNLPP--QITVLEITQNAL 92

Query: 299 NEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNW 358
             +   P           LE +    + + +T P+   +   L++    D+N     P  
Sbjct: 93  ISLPELPA---------SLEYLDACDNRL-STLPELPASLKHLDV----DNNQLTMLPEL 138

Query: 359 LLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAM 418
                  L  +   NN L+     P  P   L+ L V  N     +P             
Sbjct: 139 P----ALLEYINADNNQLT---MLPELPT-SLEVLSVRNNQLTF-LPELPE--------- 180

Query: 419 GCFNLEYLVLSENSLHG---QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475
              +LE L +S N L           +            N  T  IP+++ +      + 
Sbjct: 181 ---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHL 505
           + DN L   I   L   ++  D      + 
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 36/184 (19%)

Query: 97  FQQLETLHLDSNNIAGF-VENGGLERL-----------SGLSKLKLLNLGRN-------- 136
             Q+  L +  N +         LE L              + LK L++  N        
Sbjct: 79  PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPEL 138

Query: 137 --------LFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSL 188
                     NN +       +SL  LS+  N+L          +   +LE L +  + L
Sbjct: 139 PALLEYINADNNQLTMLPELPTSLEVLSVRNNQL------TFLPELPESLEALDVSTNLL 192

Query: 189 HISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYL 248
             S+          +   I     +  +    E +  L     + +  N L  +     L
Sbjct: 193 E-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESL 250

Query: 249 NQLT 252
           +Q T
Sbjct: 251 SQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 52/306 (16%), Positives = 96/306 (31%), Gaps = 56/306 (18%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
             Q   L L+  N++   +N          ++ +L +      N++ S     +SL  L 
Sbjct: 58  INQFSELQLNRLNLSSLPDNLP-------PQITVLEIT----QNALISLPELPASLEYLD 106

Query: 157 LGYNRLKGSIDVKETL-DNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA 215
              NRL        TL +   +L+ L +D + L   + +       L+ ++  N +    
Sbjct: 107 ACDNRL-------STLPELPASLKHLDVDNNQL-TMLPELP---ALLEYINADNNQ---- 151

Query: 216 LGDDEEGLCRLGHLQELHMGGNDLR------GTLPCLYL--NQLTGNISSSP--LIHLTS 265
           L    E       L+ L +  N L        +L  L +  N L  ++ + P    H   
Sbjct: 152 LTMLPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEE 207

Query: 266 IE-RLFLSYNQF-QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
            E       N+   IP ++    +L        E N +      S S     Q       
Sbjct: 208 TEIFFRCRENRITHIPENI---LSLDPTCTIILEDNPLSSRIRESLSQ----QTAQPDYH 260

Query: 324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWL------LKNNPNLSTLVLRNNSLS 377
           G  I+ +      N     L D   +       + +       ++  + +T     + LS
Sbjct: 261 GPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLS 320

Query: 378 GPFQTP 383
                 
Sbjct: 321 DTVSAR 326

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 51/211 (24%), Positives = 76/211 (36%), Gaps = 38/211 (18%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
            L+ L LS     ++    +     L  L+ L L  N        + S  S L+ L   +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQS---LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 479 NNLYGNIPARL-GNLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISGSLPSC 536
            NL  ++     G+L +L ++ +A N +Q   +P  F  L  LE LDLS N I  S+   
Sbjct: 110 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC- 166

Query: 537 SSHSTIQQVHLSKNMLYGPLKYGTFFN----RSSIVTLDLSYNSFSGNIPYWIERLIRLR 592
                                              ++LDLS N  +  I     + IRL+
Sbjct: 167 ----------------------TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 593 YLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
            L L  N L+         L  L+ I L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 24/205 (11%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
            L +     F +L+ L L    I   +E+G       LS L  L L  N   +    + +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA---YQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLKR 204
           GLSSL+ L      L  S++    + +   L++L + +    I   K    F   T+L+ 
Sbjct: 98  GLSSLQKLVAVETNLA-SLE-NFPIGHLKTLKELNVAH--NLIQSFKLPEYFSNLTNLEH 153

Query: 205 LSIQNGRVDGALGDDEEGLCRLGHLQ-ELHMGGNDLRG---------TLPCLYL--NQLT 252
           L + + ++      D   L ++  L   L +  N +            L  L L  NQL 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213

Query: 253 GNISSSPLIHLTSIERLFLSYNQFQ 277
            ++       LTS+++++L  N + 
Sbjct: 214 -SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 40/218 (18%), Positives = 86/218 (39%), Gaps = 45/218 (20%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNN---SIFSSLAGLSSLRTLS 156
            + L L  N +   + +          +L++L+L R          +     LS L TL 
Sbjct: 30  TKNLDLSFNPLR-HLGSYS---FFSFPELQVLDLSRCEIQTIEDGAYQ---SLSHLSTLI 82

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAA--FTSLKRLS-----IQN 209
           L  N ++ S+ +       ++L+ L    +  +++ L++       +LK L+     IQ+
Sbjct: 83  LTGNPIQ-SLAL-GAFSGLSSLQKLVAVET--NLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLR-------GTLPCLYLNQLTGNISSSPLIH 262
            ++             L +L+ L +  N ++         L  + L  L+ ++S +P+  
Sbjct: 139 FKLPEY-------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 263 L-------TSIERLFLSYNQFQ-IPFSLEPFFNLSKLK 292
           +         ++ L L  NQ + +P  +  F  L+ L+
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGI--FDRLTSLQ 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 45/240 (18%)

Query: 519 LEILDLSENNISGSLPSCSSHS--TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN- 575
            + LDLS N +   L S S  S   +Q + LS+  +   ++ G + + S + TL L+ N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 576 --SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL-FGQIPGC 632
             S +         L  L+ L+    NL       +  LK L+ +++++N +   ++P  
Sbjct: 88  IQSLALGAF---SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 633 LDN----TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKP 688
             N      L              + N+  + +                         + 
Sbjct: 145 FSNLTNLEHLD------------LSSNKIQSIYCT-----------------DLRVLHQM 175

Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
                 +DLS N +   I P   K   ++ L    N L  V    F  L  ++ + +  N
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 54/251 (21%), Positives = 82/251 (32%), Gaps = 55/251 (21%)

Query: 264 TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
            S + L LS+N  +    L    FF+  +L+V      EI                    
Sbjct: 28  FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEI-------------------- 64

Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL----S 377
                I     + L +   L L      N              +L  LV    +L    +
Sbjct: 65  ---QTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 378 GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLH 434
            P          L  L+V+ N  Q +  L    +  S+L     NLE+L LS N   S++
Sbjct: 118 FPIGHLKT----LKELNVAHNLIQ-SFKLP-EYF--SNLT----NLEHLDLSSNKIQSIY 165

Query: 435 GQLFSKKNYLRKLA-RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNL 492
                  + +  L   L L  N     I        RL+ L +  N L  ++P      L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRL 223

Query: 493 SSLNDIMMASN 503
           +SL  I + +N
Sbjct: 224 TSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 44/248 (17%)

Query: 128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSS 187
            K L+L  N   +    S      L+ L L    ++ +I+      + ++L  L L  + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG-AYQSLSHLSTLILTGNP 87

Query: 188 LHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
           +                 S+  G   G           L  LQ+L               
Sbjct: 88  IQ----------------SLALGAFSG-----------LSSLQKLV------------AV 108

Query: 248 LNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPES 307
              L  ++ + P+ HL +++ L +++N  Q     E F NL+ L+      N+I     +
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 308 SHSTTPKFQLESVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNL 366
                 +  L ++SL  S           + +  L+ +    + LK   P+ +     +L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSL 226

Query: 367 STLVLRNN 374
             + L  N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 40/224 (17%), Positives = 68/224 (30%), Gaps = 49/224 (21%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
            S   LDLS+N       Y       L+ L L+   ++         L  L  + L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 625 L-------FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT 677
           +       F      L                                 L   E+     
Sbjct: 88  IQSLALGAFSG-LSSLQKLVAVETN------------------------LASLENFPIGH 122

Query: 678 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSN 736
                      L  +  ++++ N +     P+    LTN+  L+ S N +  +       
Sbjct: 123 -----------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 737 LNQVE----SLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
           L+Q+     SLD+S N +N  I P   +   L   ++  N L +
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 50/199 (25%), Positives = 71/199 (35%), Gaps = 34/199 (17%)

Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP 508
            LHL  N        +L   +RL  L +    L   +    G L  L  + ++ N LQ  
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQS- 91

Query: 509 IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
           +PL    L  L +LD+S N ++ SLP                        G       + 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPL-----------------------GALRGLGELQ 127

Query: 569 TLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627
            L L  N     +P  +     +L  L LANNNL       L GL+ L  + L  N+L+ 
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 628 QIPGCLDNTS-----LHNN 641
              G   +       LH N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 53/206 (25%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA 147
             + + L P+ +L  L+LD   +        L+    L  L  L+L  N    S+     
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQ 97

Query: 148 GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207
            L +L  L + +NRL  S+ +   L     L++L L  + L                 ++
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLG-ALRGLGELQELYLKGNELK----------------TL 139

Query: 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIE 267
             G +                L++L             L  N LT  + +  L  L +++
Sbjct: 140 PPGLLT-----------PTPKLEKLS------------LANNNLT-ELPAGLLNGLENLD 175

Query: 268 RLFLSYNQFQ-IPFSLEPFFNLSKLK 292
            L L  N    IP   + FF    L 
Sbjct: 176 TLLLQENSLYTIP---KGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 43/213 (20%), Positives = 58/213 (27%), Gaps = 54/213 (25%)

Query: 412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRL 471
           F     M    L  L L    L          L  L  L L  N     +P        L
Sbjct: 46  FSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102

Query: 472 EGLYMSDNNLYGNIPARL-GNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
             L +S N L  ++P      L  L ++ +  N L+   P        LE L L+ NN++
Sbjct: 103 TVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

Query: 531 GSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIR 590
             LP+                       G                            L  
Sbjct: 162 -ELPA-----------------------GLL------------------------NGLEN 173

Query: 591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
           L  L+L  N+L   +P    G   L    L  N
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 31/202 (15%)

Query: 559 GTFFNRSSIVTLDLSYNSFS---GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQL 615
                 +S + ++    + +    ++P           L L+ N L       L    +L
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 616 RLIDLSNNNL-----FGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY-FVGPSILEK 669
             ++L    L      G +P  L    L +N   + S           T   V  + L  
Sbjct: 58  TQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQ--LQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 670 EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTG 728
                              L ++  + L  N+L   +PP +      +  L+ ++NNLT 
Sbjct: 115 LPLGALR-----------GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 729 VIPVSFSNLNQVESLDVSHNNL 750
           +     + L  +++L +  N+L
Sbjct: 163 LPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 44/246 (17%), Positives = 69/246 (28%), Gaps = 77/246 (31%)

Query: 264 TSIERLFLSYNQFQIPFSLEP--FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
                L LS N      +         ++L   + +  E+               L ++ 
Sbjct: 31  KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP----VLGTLD 83

Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQ 381
           LS            +NQ           +L            P L+ L +  N L+    
Sbjct: 84  LS------------HNQL---------QSLPLLGQT-----LPALTVLDVSFNRLTS--- 114

Query: 382 TPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLF 438
                                   L +G      L      L+ L L  N   +L   L 
Sbjct: 115 ------------------------LPLGAL--RGLG----ELQELYLKGNELKTLPPGLL 144

Query: 439 SKKNYLRKLARLHLDANYFTGEIPKSL-SNCSRLEGLYMSDNNLYGNIPARLGNLSSLND 497
           +      KL +L L  N  T E+P  L +    L+ L + +N+LY  IP        L  
Sbjct: 145 TP---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 498 IMMASN 503
             +  N
Sbjct: 200 AFLHGN 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 119 LERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNL 178
           +    GL+     NLG+    +    S   LS ++  +   + ++ S+     +  FTNL
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL---AGMQFFTNL 65

Query: 179 EDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGND 238
           ++L L  S   IS L  +   T L+ LS+   R+      +  G+     L  L +  N+
Sbjct: 66  KELHL--SHNQISDLSPLKDLTKLEELSVNRNRL-----KNLNGIPSA-CLSRLFLDNNE 117

Query: 239 LRGTLPCLYLNQLTG------NISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKL 291
           LR T   ++L  L         + S   L  L+ +E L L  N+     +      L K+
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKV 174

Query: 292 KVFSGEFNEIYVEPES 307
                   +   EP  
Sbjct: 175 NWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 39/200 (19%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLR 153
                 ++  + D++NI        L  +   + LK L+L  N    S  S L  L+ L 
Sbjct: 37  QKELSGVQNFNGDNSNIQS------LAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLE 88

Query: 154 TLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVD 213
            LS+  NRLK +++   +      L  L LD +   +    S+    +L+ LSI+N ++ 
Sbjct: 89  ELSVNRNRLK-NLNGIPSA----CLSRLFLDNNE--LRDTDSLIHLKNLEILSIRNNKL- 140

Query: 214 GALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSY 273
                    L  L  L+ L + GN++                ++  L  L  +  + L+ 
Sbjct: 141 ----KSIVMLGFLSKLEVLDLHGNEIT---------------NTGGLTRLKKVNWIDLTG 181

Query: 274 NQFQIPFSLEPFFNLSKLKV 293
            +       EP     +L +
Sbjct: 182 QK----CVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 489 LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548
              L++     +    +   +  +  +L+ ++  +   +NI  SL      + ++++HLS
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ 608
            N +          + + +  L ++ N    N+         L  L L NN L       
Sbjct: 72  HNQIS---DLSPLKDLTKLEELSVNRNRLK-NLN--GIPSACLSRLFLDNNELRDTDS-- 123

Query: 609 LCGLKQLRLIDLSNNNL 625
           L  LK L ++ + NN L
Sbjct: 124 LIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 39/273 (14%), Positives = 69/273 (25%), Gaps = 54/273 (19%)

Query: 258 SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQL 317
            P   L +  +  L          L     LS ++ F+G+ + I                
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNI---------------- 53

Query: 318 ESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377
                    +       +    +L+ +  S + +  +     LK+   L  L +  N L 
Sbjct: 54  -------QSL-----AGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLK 98

Query: 378 GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL 437
                   P   L  L +  N  +    L               NLE L +  N L    
Sbjct: 99  ---NLNGIPSACLSRLFLDNNELRDTDSLI-----------HLKNLEILSIRNNKLKS-- 142

Query: 438 FSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLND 497
                +L KL  L L  N  T      L+   ++  + ++              L   N 
Sbjct: 143 IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 498 IMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
           +         P  +            +      
Sbjct: 201 VKDPDGRWISPYYIS--NGGSYVDGCVLWELPV 231

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 46/215 (21%), Positives = 74/215 (34%), Gaps = 9/215 (4%)

Query: 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMA-SNH 504
              L             + S    LE + +S N++   I A    NL  L++I +  +N+
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 505 LQGPIPLEFCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNMLYGPLKYGTFF 562
           L    P  F  L  L+ L +S   I   LP            + +  N+    ++  +F 
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 563 N-RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDL 620
                 V L L+ N     I        +L  L L++NN   E+PN    G     ++D+
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 621 SNNNLFGQIPGCLDN-TSLHNNGDNVGSSAPTFNP 654
           S   +       L+N   L           PT   
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 16/210 (7%)

Query: 422 NLEYLVLSEN----SLHGQLFSKKNYLRKLARLHL-DANYFTGEIPKSLSNCSRLEGLYM 476
           +LE + +S+N     +   +FS    L KL  + +  AN      P++  N   L+ L +
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSN---LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 477 SDNNLYGNIPARL-GNLSSLNDIMMASN-HLQGPIPLEFCQL-NYLEILDLSENNISGSL 533
           S+  +  ++P     +      + +  N ++       F  L     IL L++N I    
Sbjct: 112 SNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 534 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRY 593
            S  + + + +++LS N     L    F   S  V LD+S         Y +E L +LR 
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR- 229

Query: 594 LILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
              +  NL+ ++P  L  L  L    L+  
Sbjct: 230 -ARSTYNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 29/212 (13%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS---- 144
           +     + F  LE + +  N++   +E      L  L ++++         N++      
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK------ANNLLYINPE 98

Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR 204
           +   L +L+ L +    +K  +       +      L +   +++I  ++   +F  L  
Sbjct: 99  AFQNLPNLQYLLISNTGIK-HLP-DVHKIHSLQKVLLDI-QDNINIHTIER-NSFVGLSF 154

Query: 205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLT 264
            S+        + +          L EL++  N           N L   + +      +
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN-----------NNLE-ELPNDVFHGAS 202

Query: 265 SIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFS 295
               L +S  +   +P       NL KL+  S
Sbjct: 203 GPVILDISRTRIHSLPSYG--LENLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 62/254 (24%)

Query: 519 LEILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 576
              L      +   +     S    ++++ +S+N +   ++   F N   +  + +   +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 577 FSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
               I     + L  L+YL+++N  ++           Q  L+D+ +N     I      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI---NI------ 141

Query: 636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV 695
            ++  N                   FVG S                             +
Sbjct: 142 HTIERNS------------------FVGLSFESVI------------------------L 159

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNN-LTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
            L+ N +  EI       T +  LN S NN L  +    F   +    LD+S   ++  +
Sbjct: 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SL 217

Query: 755 PPQ----LVELNAL 764
           P      L +L A 
Sbjct: 218 PSYGLENLKKLRAR 231

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 20/242 (8%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH--WHLDALHVSK 397
           +   + F  + L+            +L  + +  N +       I+     +L  LH  +
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL----EVIEADVFSNLPKLHEIR 85

Query: 398 NFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYF 457
                N+     +Y          NL+YL++S   +       K +  +   L +  N  
Sbjct: 86  IEKANNL-----LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 458 TGEIPKSLSN--CSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFC 514
              I ++           L+++ N +   I              +  +N+L+      F 
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 515 QLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 574
             +   ILD+S   I  SLPS    +      L     Y   K  T     +++   L+Y
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENL---KKLRARSTYNLKKLPTLEKLVALMEASLTY 255

Query: 575 NS 576
            S
Sbjct: 256 PS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 45/239 (18%)

Query: 316 QLESVSLSGSDIHATFPKF-LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNN 374
            LE + +S +D+          N   L  +    +N          +N PNL  L++ N 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 375 SLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN--- 431
            +                                  + P    +       L + +N   
Sbjct: 115 GIK---------------------------------HLPDVHKIHSLQKVLLDIQDNINI 141

Query: 432 -SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR-L 489
            ++    F       +   L L+ N    EI  S  N ++L+ L +SDNN    +P    
Sbjct: 142 HTIERNSFV--GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 490 GNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548
              S    + ++   +          L  L             LP+      + +  L+
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 44/280 (15%), Positives = 77/280 (27%), Gaps = 58/280 (20%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSI-FSSLAGLSSLRTLSL- 157
              L      +    +       SG   L+ + + +N     I     + L  L  + + 
Sbjct: 32  AIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALG 217
             N L   I+  E   N  NL+ L +  + +                  + +        
Sbjct: 88  KANNLL-YIN-PEAFQNLPNLQYLLISNTGIK----------------HLPDVH------ 123

Query: 218 DDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTS-IERLFLSYNQF 276
                         L +  N             +   I  +  + L+     L+L+ N  
Sbjct: 124 -----KIHSLQKVLLDIQDN-----------INIH-TIERNSFVGLSFESVILWLNKNGI 166

Query: 277 Q-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFL 335
           Q I  S   F      ++   + N +   P              + +S + IH+     L
Sbjct: 167 QEIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASG--PVILDISRTRIHSLPSYGL 222

Query: 336 YNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNS 375
            N   L     S  NLK + P   L+    L    L   S
Sbjct: 223 ENLKKLRA--RSTYNLK-KLPT--LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
                +K+T EIP  +    N   L F    L  +   +FS    +E +++S N++   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 755 PPQ-LVELNALVVFSVAHNN 773
                  L  L    +   N
Sbjct: 71  EADVFSNLPKLHEIRIEKAN 90

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 32/239 (13%)

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIA--AF---TSLKR 204
            +   L     +L+  I  K     F +LE + +  +     +L+ I    F     L  
Sbjct: 30  RNAIELRFVLTKLR-VIQ-KGAFSGFGDLEKIEISQN----DVLEVIEADVFSNLPKLHE 83

Query: 205 LSIQNGRVDGALGDDEEGLCR-LGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHL 263
           + I+       L        + L +LQ L +    ++             ++     IH 
Sbjct: 84  IRIEKAN---NLLYINPEAFQNLPNLQYLLISNTGIK-------------HLPDVHKIHS 127

Query: 264 TSIERLFLSYNQFQIPFSLEPFFNLS-KLKVFSGEFNEIYVEPESSHSTTPKFQLESVSL 322
                L +  N          F  LS +  +     N I     S+ + T   +L     
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN--LS 185

Query: 323 SGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQ 381
             +++        +      ++D S + +    P++ L+N   L      N       +
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLE 243

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 76/446 (17%), Positives = 128/446 (28%), Gaps = 111/446 (24%)

Query: 91  ASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGL----SKLKLLNLGRNLFNNSIFSSL 146
           A LL   QQ + + LD   +         + +S        L  LNL  N   +     +
Sbjct: 21  AELLPLLQQCQVVRLDDCGLT----EARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76

Query: 147 A-GLSS----LRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF 199
             GL +    ++ LSL    L   G   +  TL     L++L L  + L  + L+ +   
Sbjct: 77  LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136

Query: 200 -----TSLKRLSIQNGRVD----GALGDDEEGLCRLGHLQELHMGGNDL----------- 239
                  L++L ++   +       L      L      +EL +  ND+           
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLA---SVLRAKPDFKELTVSNNDINEAGVRVLCQG 193

Query: 240 ----RGTLPCLYL--NQLT----GNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLS 289
                  L  L L    +T     ++    +    S+  L L  N+              
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLG------------ 240

Query: 290 KLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDS 349
                     E+        S      L ++ +    I A     L              
Sbjct: 241 -----DVGMAELCPGLLHPSSR-----LRTLWIWECGITAKGCGDLCR------------ 278

Query: 350 NLKGEFPNWLLKNNPNLSTLVLRNNSLSGP-----FQTPIQPHWHLDALHVSKNFFQGNI 404
                    +L+   +L  L L  N L         +T ++P   L++L V    F    
Sbjct: 279 ---------VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT--- 326

Query: 405 PLEIGVYFPSHLAMGCFNLEYLVLSENSLHG---QLFSK--KNYLRKLARLHLDANYFTG 459
                    S +      L  L +S N L     +   +        L  L L     + 
Sbjct: 327 --AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 460 E----IPKSLSNCSRLEGLYMSDNNL 481
                +  +L     L  L +S+N L
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 81/498 (16%), Positives = 156/498 (31%), Gaps = 105/498 (21%)

Query: 126 SKLKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLT 182
             ++ L++     +++ ++ L   L   + + L    L      D+   L     L +L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 183 LDYSSLHISILKSIAAF-----TSLKRLSIQNGRV-DGALGDDEEGLCRLGHLQELHMGG 236
           L  + L    +  +          +++LS+QN  +     G     L  L  LQELH+  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 237 NDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF------QIPFSLEPFFNLSK 290
           N L         +     +    L     +E+L L Y          +   L    +  +
Sbjct: 123 NLLG--------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 291 LKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSN 350
           L V + + NE  V            QLE++ L    + +   + L               
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG------------- 221

Query: 351 LKGEFPNWLLKNNPNLSTLVLRNNSLSGP-----FQTPIQPHWHLDALHVSKNFFQGNIP 405
                   ++ +  +L  L L +N L            + P   L  L + +        
Sbjct: 222 --------IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC------- 266

Query: 406 LEIGVYFPSHLA---MGCFNLEYLVLSENSLH---GQLFSK--KNYLRKLARLHLDANYF 457
             I       L        +L+ L L+ N L     +L  +       +L  L + +  F
Sbjct: 267 -GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 458 TGE----IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEF 513
           T          L+    L  L +S+N L  +   R      L   +     +        
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVRE-----LCQGLGQPGSV-------- 371

Query: 514 CQLNYLEILDLSENNISGS-----LPSCSSHSTIQQVHLSKN--------MLYGPLKYGT 560
                L +L L++ ++S S       +  ++ +++++ LS N         L   ++   
Sbjct: 372 -----LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ-- 424

Query: 561 FFNRSSIVTLDLSYNSFS 578
                 +  L L    +S
Sbjct: 425 --PGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 69/404 (17%), Positives = 121/404 (29%), Gaps = 89/404 (22%)

Query: 91  ASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGL-----SKLKLLNLGRNLFNN----S 141
           +S L     L+ LHL  N +     + GL+ L         +L+ L L     +      
Sbjct: 106 SSTLRTLPTLQELHLSDNLL----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 142 IFSSLAGLSSLRTLSLGYNRL--KGSIDVKETL-DNFTNLEDLTLDYSSLHISILKSIAA 198
           + S L      + L++  N +   G   + + L D+   LE L L+   +     + +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 199 F----TSLKRLSIQNGRV--DGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
                 SL+ L++ + ++   G        L     L+ L +    +     C  L    
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDL---- 276

Query: 253 GNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTT 312
                  L    S++ L L+ N+                ++      E            
Sbjct: 277 ----CRVLRAKESLKELSLAGNELG----------DEGARLLCETLLE------------ 310

Query: 313 PKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLR 372
           P  QLES+ +      A       +                     +L  N  L  L + 
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSS---------------------VLAQNRFLLELQIS 349

Query: 373 NNSLSGP-----FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLV 427
           NN L         Q   QP   L  L ++          +      +   +   +L  L 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS-----DSSCSSLAATLLANHSLRELD 404

Query: 428 LSENSLH---GQLFSK--KNYLRKLARLHLDANYFTGEIPKSLS 466
           LS N L         +  +     L +L L   Y++ E+   L 
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 80/509 (15%), Positives = 142/509 (27%), Gaps = 134/509 (26%)

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF----TSLKRL 205
             +++L +    L       E L      + + LD   L  +  K I++      +L  L
Sbjct: 3   LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 206 SIQNGRVDGALGDDE-EGLCRL-----GHLQELHMGGNDLRGTLPCLYLNQLTGNISSSP 259
           ++++      LGD     + +        +Q+L +    L     C  L        SS 
Sbjct: 62  NLRSNE----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVL--------SST 108

Query: 260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLES 319
           L  L +++ L LS N                          +               LE 
Sbjct: 109 LRTLPTLQELHLSDNLLG-----------------DAGLQLLCEGLLDPQCR-----LEK 146

Query: 320 VSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGP 379
           + L    + A   + L +                     +L+  P+   L + NN ++  
Sbjct: 147 LQLEYCSLSAASCEPLAS---------------------VLRAKPDFKELTVSNNDINEA 185

Query: 380 -----FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLH 434
                 Q        L+AL +        +  +        +A    +L  L L  N L 
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESC----GVTSDNCRDLCGIVA-SKASLRELALGSNKLG 240

Query: 435 G---QLFSK--KNYLRKLARLHLDANYFTGE----IPKSLSNCSRLEGLYMSDNNLYGNI 485
                       +   +L  L +     T +    + + L     L+ L ++ N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG----SLPSC-SSHS 540
              L          +     Q            LE L +   + +        S  + + 
Sbjct: 301 ARLLCE-------TLLEPGCQ------------LESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 541 TIQQVHLSKNMLYGP----LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLIL 596
            + ++ +S N L       L  G     S +  L L+    S +             L  
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS---------CSSLAA 392

Query: 597 ANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
                       L     LR +DLSNN L
Sbjct: 393 T-----------LLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 41/226 (18%)

Query: 89  LNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
           L   LL P  +LE L L+  +++          L      K L +  N  N +    L  
Sbjct: 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192

Query: 149 L-----SSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF-- 199
                   L  L L    +      D+   + +  +L +L L  + L    +  +     
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 200 ---TSLKRLSIQNGRVD----GALGDDEEGLCRLGHLQELHMGGNDLRG----------- 241
              + L+ L I    +     G L      L     L+EL + GN+L             
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLC---RVLRAKESLKELSLAGNELGDEGARLLCETLL 309

Query: 242 ----TLPCLYL--NQLTG----NISSSPLIHLTSIERLFLSYNQFQ 277
                L  L++     T     + SS  L     +  L +S N+ +
Sbjct: 310 EPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 47/305 (15%), Positives = 95/305 (31%), Gaps = 52/305 (17%)

Query: 363 NPNLSTLVLRNNSLSGPFQTPIQPHW-HLDALHVSKNFFQGNIPLEIGVYFPSHLAMG-- 419
           + ++ +L ++   LS      + P       + +            +       ++    
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC--------GLTEARCKDISSALR 53

Query: 420 -CFNLEYLVLSENSLHG---QLFSK--KNYLRKLARLHLDANYFTGE----IPKSLSNCS 469
               L  L L  N L         +  +    K+ +L L     TG     +  +L    
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 470 RLEGLYMSDNNLYGNIPAR------LGNLSSLNDIMMASNHLQ----GPIPLEFCQLNYL 519
            L+ L++SDN L G+   +      L     L  + +    L      P+          
Sbjct: 114 TLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 520 EILDLSENNISGS----LPS--CSSHSTIQQVHLSKNMLYGPLKYGTFF----NRSSIVT 569
           + L +S N+I+ +    L      S   ++ + L    +              +++S+  
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRE 231

Query: 570 LDLSYNSFSGN-----IPYWIERLIRLRYLILANNNLEGE----VPNQLCGLKQLRLIDL 620
           L L  N           P  +    RLR L +    +  +    +   L   + L+ + L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 621 SNNNL 625
           + N L
Sbjct: 292 AGNEL 296

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPAR--LGNLSSLNDIMMASNHLQGPIPLEFCQLN 517
            +P+SL   S    L +S NNL   + A      L++L+ ++++ NHL       F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 518 YLEILDLSENNISGSLPSCSSHST--IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
            L  LDLS N++  +L          ++ + L  N +   +    F + + +  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQN 146

Query: 576 SFSGNIP----YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRL--IDLSNNNL 625
             S   P        +L +L  L L++N L+      L  L       + L NN L
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 28/164 (17%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS----SLAGLSSLRTL 155
              L L  NN++         RL+ L  L        L +N +      +   + +LR L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSL-------LLSHNHLNFISSEAFVPVPNLRYL 93

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF---TSLKRLSIQNGRV 212
            L  N L  ++D +    +   LE L L  +  HI ++    AF     L++L +   ++
Sbjct: 94  DLSSNHLH-TLD-EFLFSDLQALEVLLLYNN--HIVVVDR-NAFEDMAQLQKLYLSQNQI 148

Query: 213 ----DGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
                  +    +   +L  L  L +  N L+  LP   L +L 
Sbjct: 149 SRFPVELI----KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 99  QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNL---FNNSIFSSLAGLSSLRTL 155
            L +L L  N++  F+ +        +  L+ L+L  N     +  +FS    L +L  L
Sbjct: 65  NLHSLLLSHNHLN-FISSEA---FVPVPNLRYLDLSSNHLHTLDEFLFS---DLQALEVL 117

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDY---SSLHISILKSIAAFTSLKRLSIQNGRV 212
            L  N +   +D +   ++   L+ L L     S   + ++K       L  L + + ++
Sbjct: 118 LLYNNHIV-VVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 213 DGALGDDEEGLCRLGHLQELHMGGN 237
                 D + L        L++  N
Sbjct: 176 KKLPLTDLQKLPAWVK-NGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 45/197 (22%), Positives = 68/197 (34%), Gaps = 46/197 (23%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
              L+D S +NL      W      NL +L+L +N L+                 +S   
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------------FISSEA 83

Query: 400 FQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANY 456
           F                     NL YL LS N   +L   LFS    L+ L  L L  N+
Sbjct: 84  FV-----------------PVPNLRYLDLSSNHLHTLDEFLFSD---LQALEVLLLYNNH 123

Query: 457 FTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR----LGNLSSLNDIMMASNHLQGPIPLE 512
                  +  + ++L+ LY+S N +    P         L  L  + ++SN L+     +
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 513 FCQLNYL--EILDLSEN 527
             +L       L L  N
Sbjct: 183 LQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 696 DLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           DLS N L   +   +   L  +  L   +N++  V   +F ++ Q++ L +S N ++ + 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 755 PPQ----LVELNALVVFSVAHNNLS 775
           P +      +L  L++  ++ N L 
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 11/115 (9%)

Query: 98  QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN---LFNNSIFSSLAGLSSLRT 154
             L  L L SN++    E       S L  L++L L  N   + + + F     ++ L+ 
Sbjct: 88  PNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQK 140

Query: 155 LSLGYNRLKG-SIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQ 208
           L L  N++    +++ +  +    L  L L  + L    L  +    +  +  + 
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 50/198 (25%)

Query: 565 SSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
           S    LDLS+N+ S     W   RL  L  L+L++N+L          +  LR +DLS+N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 624 NLFGQIP-GCLDNTS------LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT 676
           +L   +      +        L+NN                               +   
Sbjct: 99  HL-HTLDEFLFSDLQALEVLLLYNN---------------------------HIVVV--- 127

Query: 677 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI----GKLTNIRALNFSHNNLTGVIPV 732
               +F      + ++  + LS N+++   P ++     KL  +  L+ S N L  +   
Sbjct: 128 -DRNAFED----MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 733 SFSNLNQVESLDVS-HNN 749
               L       +  HNN
Sbjct: 182 DLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 696 DLSCNKLTGEIPPQI--GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
           DLS N L+  +  +    +LTN+ +L  SHN+L  +   +F  +  +  LD+S N+L+  
Sbjct: 45  DLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-T 102

Query: 754 IPPQ-LVELNALVVFSVAHNNLSA 776
           +      +L AL V  + +N++  
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVV 126

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 65/223 (29%)

Query: 264 TSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLS 323
           +    L LS+N       L   +  ++L                         L S+ LS
Sbjct: 39  SYTALLDLSHNNLS---RLRAEWTPTRLT-----------------------NLHSLLLS 72

Query: 324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTP 383
            + ++    +      +L  +D S ++L      +L  +   L  L+L NN +       
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV------ 125

Query: 384 IQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSEN---SLHGQLFSK 440
                                          +       L+ L LS+N       +L   
Sbjct: 126 ---------------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 441 KNYLRKLARLHLDANYFTGEIPKSLSNCSRL--EGLYMSDNNL 481
            N L KL  L L +N         L         GLY+ +N L
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 34/215 (15%), Positives = 78/215 (36%), Gaps = 18/215 (8%)

Query: 422 NLEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIP-KSLSNCSRLEGLYMS 477
           + + L L E    ++    FS    L  ++R+++  +    ++   S  N S++  + + 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSN---LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 478 DNNLYGNIPAR-LGNLSSLNDIMMASNHLQG-PIPLEFCQLNYLEILDLSENNISGSLPS 535
           +      I    L  L  L  + + +  L+  P   +    +   IL++++N    S+P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 536 ---CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLIR- 590
                  +    + L  N     ++   F N + +  + L+ N +   I       +   
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTS-VQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
              L ++  ++       L  LK+L     +   L
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIA--RNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 25/212 (11%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS-SLAGLSSLRTLSLG 158
            +TL L   ++     +      S L  +  + +  ++    + S S   LS +  + + 
Sbjct: 33  TQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 159 YNRLKGSIDVKETLDNFTNLEDLTLDYSSL-HISILKSIAAFTSLKRLSIQNGRVDGALG 217
             R    ID  + L     L+ L +  + L     L  + +      L I +     ++ 
Sbjct: 89  NTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 218 DDE-EGLCRLGHLQELHMGGNDLRG---------TLPCLYL--NQLTGNISSSPLIHLTS 265
            +  +GLC       L +  N              L  +YL  N+    I       + S
Sbjct: 148 VNAFQGLCNE--TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 266 -IERLFLSYNQFQ-IPFSLEPFFNLSKLKVFS 295
               L +S      +P       +L +L   +
Sbjct: 206 GPSLLDVSQTSVTALPSKG--LEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 39/242 (16%), Positives = 78/242 (32%), Gaps = 37/242 (15%)

Query: 514 CQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 573
           C+ +  E   ++  +I   +PS     + Q + L +  L   +    F N  +I  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSLPP--STQTLKLIETHLRT-IPSHAFSNLPNISRIYVS 63

Query: 574 YNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQ-LCGLKQLRLIDLSNNNLFGQIPG 631
            +     +       L ++ ++ + N      +    L  L  L+ + + N  L    P 
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD 122

Query: 632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT-KEISFSYKGKPLN 690
                S                            ILE  ++   T+    +F        
Sbjct: 123 LTKVYSTDIF-----------------------FILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNN-LTGVIPVSFSNL-NQVESLDVSHN 748
            +    L  N  T  +       T + A+  + N  LT +   +F  + +    LDVS  
Sbjct: 160 TLK---LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 749 NL 750
           ++
Sbjct: 216 SV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 31/166 (18%)

Query: 468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN 527
           C + E   ++  ++   IP+   +  +L    +   HL+      F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDI-QRIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 528 NISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIE 586
                L S                        +F+N S +  +++        I    ++
Sbjct: 66  VTLQQLES-----------------------HSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 587 RLIRLRYLILANNNLEGEVPNQ--LCGLKQLRLIDLSNNNLFGQIP 630
            L  L++L + N  L+   P+   +       ++++++N     IP
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
             ++C  +   IP       + + L     +L  +   +FSNL  +  + VS +    ++
Sbjct: 16  FRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 755 PPQL-VELNALVVFSVAHNN 773
                  L+ +    + +  
Sbjct: 72  ESHSFYNLSKVTHIEIRNTR 91

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 14/135 (10%)

Query: 103 LHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRL 162
           LH     I           LS L   K L L  N       SSL+G+ +LR LSLG N +
Sbjct: 30  LHGMIPPIEKMDAT-----LSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLI 82

Query: 163 KGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEG 222
           K    ++        LE+L + Y+   I+ L  I    +L+ L + N ++      + + 
Sbjct: 83  K---KIENLDAVADTLEELWISYN--QIASLSGIEKLVNLRVLYMSNNKITNW--GEIDK 135

Query: 223 LCRLGHLQELHMGGN 237
           L  L  L++L + GN
Sbjct: 136 LAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 28/156 (17%), Positives = 64/156 (41%), Gaps = 20/156 (12%)

Query: 169 KETLDNFTNLEDLTLDYSSLHIS-ILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLG 227
           +      T  E + L      I  +  +++   + K L++    ++         L  + 
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-----KISSLSGME 70

Query: 228 HLQELHMGGNDLR---------GTLPCLYL--NQLTGNISSSPLIHLTSIERLFLSYNQF 276
           +L+ L +G N ++          TL  L++  NQ+    S S +  L ++  L++S N+ 
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKI 127

Query: 277 QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTT 312
                ++    L KL+      N +Y + + +++T+
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 53/234 (22%)

Query: 91  ASLLTPFQQLETLHLDSNNI-----AGFVENGGLERLSGLSKLKLLN----------LGR 135
              L    +L T+ L  N          ++   L + + L  L L N          + R
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLID--FLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 136 NLFNNSIFSSLAGLSSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLDYSSLH---- 189
            L   ++         LR++  G NRL      +  +T  +   L  + +  + +     
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 190 -ISILKSIAAFTSLKRLSIQNGRV--DGA--LGDDEEGLCRLGHLQELHMGGNDLRG--- 241
              +L+ +A    LK L +Q+      G+  L      L    +L+EL +    L     
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA---IALKSWPNLRELGLNDCLLSARGA 261

Query: 242 -------------TLPCLYL--NQLTGN----ISSSPLIHLTSIERLFLSYNQF 276
                         L  L L  N++  +    + +     +  +  L L+ N+F
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 32/221 (14%), Positives = 60/221 (27%), Gaps = 52/221 (23%)

Query: 91  ASLLTPFQQLETLHLDSNNIAGFVENGGL----ERLSGLSKLKLLNLGRNLFNN------ 140
            ++L     ++ + L  N I             E ++    L++                
Sbjct: 25  FAVLLEDDSVKEIVLSGNTI----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 80

Query: 141 ----SIFSSLAGLSSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLDYSSL------ 188
                +  +L     L T+ L  N         + + L   T LE L L  + L      
Sbjct: 81  EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140

Query: 189 -------HISILKSIAAFTSLKRLSIQNGRVDG----ALGDDEEGLCRLGHLQELHMGGN 237
                   +++ K       L+ +     R++           +       L  + M  N
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA---KTFQSHRLLHTVKMVQN 197

Query: 238 DLR--GTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
            +R  G    L             L +   ++ L L  N F
Sbjct: 198 GIRPEGIEHLL----------LEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 35/175 (20%)

Query: 90  NASLLTPFQQLETLHLDSNNIAGFVENGGLERLS----GLSKLKLLNLGRNLFNNS---- 141
                     L ++    N +    ENG ++  +        L  + + +N         
Sbjct: 151 VNKKAKNAPPLRSIICGRNRL----ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 142 -IFSSLAGLSSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLDYSSLH----ISILK 194
            +   LA    L+ L L  N     GS  +   L ++ NL +L L+   L      +++ 
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 195 SIA--AFTSLKRLSIQNGRVDGALGDDEEGLCRLG--------HLQELHMGGNDL 239
           + +      L+ L +Q   +      + + +  L          L  L + GN  
Sbjct: 267 AFSKLENIGLQTLRLQYNEI------ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 74/329 (22%)

Query: 360 LKNNPNLSTLVLRNNSLSGPFQTPI----QPHWHLDALHVSKNFFQGNIPLEI--GVYFP 413
           L  + ++  +VL  N++       +         L+    S  F  G +  EI   +   
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLL 86

Query: 414 SHLAMGCFNLEYLVLSENSLH-------GQLFSKKNYLRKLARLHLDANYFTGE------ 460
               + C  L  + LS+N+             SK   L     L+L  N    +      
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH---LYLHNNGLGPQAGAKIA 143

Query: 461 -------IPKSLSNCSRLEGLYMSDNNLYGNIPAR-----LGNLSSLNDIMMASNHL--- 505
                  + K   N   L  +    N L  N   +       +   L+ + M  N +   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

Query: 506 --QGPIPLEFCQLNYLEILDLSENNI--------SGSLPSCSSHSTIQQVHLSKNMLYGP 555
             +  +         L++LDL +N          + +L S      ++++ L+  +L   
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW---PNLRELGLNDCLLSAR 259

Query: 556 --------LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIR-----LRYLILANNNL- 601
                              + TL L YN    +    ++ +I      L +L L  N   
Sbjct: 260 GAAAVVDAFSKLEN---IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

Query: 602 -EGEVPNQLCGL----KQLRLIDLSNNNL 625
            E +V +++  +     +  L +L +   
Sbjct: 317 EEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 23/172 (13%), Positives = 57/172 (33%), Gaps = 27/172 (15%)

Query: 128 LKLLNLGRNLFNN----SIFSSLAGLSSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDL 181
           ++  +L  +        S+F+ L    S++ + L  N +  + +  + E + +  +LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 182 TLDYSSL----------HISILKSIAAFTSLKRLSIQNGRVDGALGDD-----EEGLCRL 226
                               +L+++     L  + +     D A G        + L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS----DNAFGPTAQEPLIDFLSKH 121

Query: 227 GHLQELHMGGNDLRGTLPCLYL-NQLTGNISSSPLIHLTSIERLFLSYNQFQ 277
             L+ L++  N L G      +   L     +    +   +  +    N+ +
Sbjct: 122 TPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 49/364 (13%), Positives = 100/364 (27%), Gaps = 86/364 (23%)

Query: 151 SLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAF----TSLKR 204
           S+   SL  + +  +    V   L    +++++ L  +++     + ++        L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 205 LSIQNGRVDGALGDDE--------EGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS 256
               +    G + D+         + L +   L  + +  N   G      L        
Sbjct: 65  AEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPL-------- 114

Query: 257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQ 316
              L   T +E L+L  N                    +    E+ V  ++ ++      
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGP----------QAGAKIARALQELAVNKKAKNAPP---- 160

Query: 317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
           L S+    + +     K                           +++  L T+ +  N +
Sbjct: 161 LRSIICGRNRLENGSMKEWAK---------------------TFQSHRLLHTVKMVQNGI 199

Query: 377 -----SGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG---CFNLEYLVL 428
                       +     L  L +  N F       +G    S LA+      NL  L L
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----HLGS---SALAIALKSWPNLRELGL 251

Query: 429 SENSLH---GQLFS---KKNYLRKLARLHLDANYFTGE----IPKSL-SNCSRLEGLYMS 477
           ++  L             K     L  L L  N    +    +   +      L  L ++
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

Query: 478 DNNL 481
            N  
Sbjct: 312 GNRF 315

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 30/215 (13%)

Query: 92  SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSS 151
           S L   ++L+ L  ++           L  +  +  L  L   +       FS+L  +  
Sbjct: 366 SELESCKELQELEPENKWCL-------LTIILLMRALDPLLYEKETLQY--FSTLKAVDP 416

Query: 152 LRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR 211
           +R   L   R K  ++       + ++  L L  +   +++L  +     +  L + + R
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHL--AHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 212 VDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFL 271
               L      L  L  L+ L    N L                +   + +L  ++ L L
Sbjct: 475 ----LRALPPALAALRCLEVLQASDNALE---------------NVDGVANLPRLQELLL 515

Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPE 306
             N+ Q   +++P  +  +L + + + N +  E  
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 5e-08
 Identities = 40/309 (12%), Positives = 99/309 (32%), Gaps = 17/309 (5%)

Query: 284 PFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLEL 343
              +     +   +   + VE  +         +    L  + ++   P+  +       
Sbjct: 266 TVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGS 325

Query: 344 VDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN 403
               +  L  + P    +++     L     S+        +     +   +        
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 385

Query: 404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSL-HGQLFSKKNYLRKLARLHLDANYFTGEIP 462
           + + + +            L+ L+  + +L +       + +R      L  + F  E  
Sbjct: 386 LTIILLMR----------ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL-RSKFLLENS 434

Query: 463 KSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEIL 522
                 + +  L+++  +L   +   L  L  +  + ++ N L+  +P     L  LE+L
Sbjct: 435 VLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVL 491

Query: 523 DLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP 582
             S+N +  ++   ++   +Q++ L  N L          +   +V L+L  NS      
Sbjct: 492 QASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

Query: 583 YWIERLIRL 591
              ERL  +
Sbjct: 551 I-QERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 49/261 (18%), Positives = 81/261 (31%), Gaps = 20/261 (7%)

Query: 535 SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYL 594
             +  S +    L    L   L   TF    +                 W         L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 595 ILANNNLE--GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL---DNTSLHNNGDNVGSSA 649
                ++E    + ++L   K+L+ ++  N      I   +   D            S+ 
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 650 PTFNPNRRTTYFVGPS--ILEKEESIMFTTKEISFSYKGKPLNKMYG---------VDLS 698
              +P R        S  +LE     M            K L  +           +DLS
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471

Query: 699 CNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG-KIPPQ 757
            N+L   +PP +  L  +  L  S N L  V     +NL +++ L + +N L        
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQP 528

Query: 758 LVELNALVVFSVAHNNLSAAE 778
           LV    LV+ ++  N+L   E
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEE 549

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL-GNLSSLNDIMMASNHLQG 507
           +L L +N  +    K+    ++L  LY++DN L   +PA +   L +L  + +  N LQ 
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 508 PIPLE-FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 566
            +P+  F QL  L  L L  N +  SLP                          F + + 
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLK-SLPP-----------------------RVFDSLTK 134

Query: 567 IVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           +  L L YN    ++P  + ++L  L+ L L NN L+         L +L+ + L NN L
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 626 FGQIPGCLDNTS------LHNN 641
                G  D+        L  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 42/197 (21%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFN---NSIFS 144
            L +       +L  L+L+ N +   +  G       L  L+ L +  N        +F 
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI---FKELKNLETLWVTDNKLQALPIGVFD 106

Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIA--AF--- 199
               L +L  L L  N+LK S+  +   D+ T L  L+L Y+      L+S+    F   
Sbjct: 107 ---QLVNLAELRLDRNQLK-SLPPR-VFDSLTKLTYLSLGYNE-----LQSLPKGVFDKL 156

Query: 200 TSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYL--NQLTGNISS 257
           TSLK L + N +                 L+ +  G  D    L  L L  NQL   +  
Sbjct: 157 TSLKELRLYNNQ-----------------LKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198

Query: 258 SPLIHLTSIERLFLSYN 274
                L  ++ L L  N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 47/193 (24%)

Query: 128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSS 187
            K L+L  N  ++    +   L+ LR L L  N+L+ ++          NLE L +  + 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG-IFKELKNLETLWVTDNK 96

Query: 188 LHISILKSIAA--FTSLKRL-----------SIQNGRVDGALGDDEEGLCRLGHLQELHM 234
                L+++    F  L  L           S+     D            L  L  L  
Sbjct: 97  -----LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-----------LTKLTYLS- 139

Query: 235 GGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKV 293
                      L  N+L  ++       LTS++ L L  NQ + +P     F  L++LK 
Sbjct: 140 -----------LGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGA--FDKLTELKT 185

Query: 294 FSGEFNEIYVEPE 306
              + N++   PE
Sbjct: 186 LKLDNNQLKRVPE 198

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
           +    L     L  LY+ +     ++  R L  L  L ++ +  + L+   P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNML 552
           L  L+LS N +           ++Q++ LS N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 534 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLR 592
            +C  H +   +  +++     L         ++  L +       ++    +  L  LR
Sbjct: 3   DACCPHGS-SGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 593 YLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640
            L +  + L    P+      +L  ++LS N L       +   SL  
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 696 DLSCNKLTGEIPPQ-IGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
            +   +    +  + +  L  +R L    + L  V P +F    ++  L++S N L   +
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95

Query: 755 PPQLVELNALVVFSVAHNNL 774
             + V+  +L    ++ N L
Sbjct: 96  SWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 24/106 (22%)

Query: 94  LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS----SLAGL 149
           L   + L  L++++      +E   L  L  L  L        +  + +      +    
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNL-------TIVKSGLRFVAPDAFHFT 79

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKS 195
             L  L+L +N L              +L   T+   SL   +L  
Sbjct: 80  PRLSRLNLSFNAL-------------ESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 695 VDLSC-NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP-VSFSNLNQVESLDVSHNNLNG 752
             L C      +    +    N+  L   +      +       L ++ +L +  + L  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR- 69

Query: 753 KIPPQ-LVELNALVVFSVAHNNLSAAERNP 781
            + P        L   +++ N L +     
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 56/305 (18%), Positives = 105/305 (34%), Gaps = 63/305 (20%)

Query: 359 LLKNNPNLSTLVLRNNSLSGP-----FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFP 413
                  +++L L  N+L         Q        + +L++S N    ++  +      
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDELV 72

Query: 414 SHLAMGCFNLEYLVLSENSLH---GQLFSK--KNYLRKLARLHLDANYFTGE----IPKS 464
             LA    N+  L LS N L         K        +  L L  N F+ +      ++
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 465 LSNC-SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523
            SN  + +  L +  N+L G   +    L  +               L     N +  L+
Sbjct: 133 FSNLPASITSLNLRGNDL-GIKSSDE--LIQI---------------LAAIPAN-VNSLN 173

Query: 524 LSENNI--------SGSLPSCSSHSTIQQVHLSKNML----YGPLKYGTFFNRSSIVTLD 571
           L  NN+        +  L S    +++  + LS N+L    Y  L Y      + +V+L+
Sbjct: 174 LRGNNLASKNCAELAKFLASI--PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 572 LSYNSFSG----NIPYWIERLIRLRYLILANNNLEGEVPNQLCGL-------KQLRLIDL 620
           L  N   G    N+    + L  L+ + L  + ++     Q   L       +++ L+D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 621 SNNNL 625
           +   +
Sbjct: 292 NGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 27/193 (13%), Positives = 66/193 (34%), Gaps = 28/193 (14%)

Query: 69  RVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGL--- 125
            +  L L     F   ++ +   +       + +L+L  N++         + L  +   
Sbjct: 110 TITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDL----GIKSSDELIQILAA 164

Query: 126 --SKLKLLNLGRNLFNNS----IFSSLAGL-SSLRTLSLGYNRL--KGSIDVKETL-DNF 175
             + +  LNL  N   +     +   LA + +S+ +L L  N L  K   ++        
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 176 TNLEDLTLDYSSLHISILKSIAAF----TSLKRLSIQNGRVDGALGDDE-----EGLCRL 226
            ++  L L  + LH   L+++         L+ + +    V   +  ++          +
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNI 283

Query: 227 GHLQELHMGGNDL 239
             +  +   G ++
Sbjct: 284 QKIILVDKNGKEI 296

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 93  LLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSL 152
           L   F++LE L   +  +        +  L  L+KLK L L  N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGLTS------IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 153 RTLSLGYNRLKGSIDVKETLDNFTNLEDLTL 183
             L+L  N++K  +   E L    NL+ L L
Sbjct: 91  THLNLSGNKIK-DLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 174 NFTNLEDLTLDYSSL-HISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQEL 232
             +++++L LD S      +      F  L+ LS  N  +          L +L  L++L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 233 HMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLK 292
            +  N + G L  L                  ++  L LS N+ +   ++EP   L  LK
Sbjct: 70  ELSDNRVSGGLEVLAEK-------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116

Query: 293 VFSGEFNEI 301
                  E+
Sbjct: 117 SLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 440 KKNYLRKLARLHLDANYFT-GEIPKSLSNCSRLEGLYMSDNNLY--GNIPARLGNLSSLN 496
           +      +  L LD +    G++         LE L   +  L    N+P     L+ L 
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLK 67

Query: 497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
            + ++ N + G + +   +   L  L+LS N I 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 93  LLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSL 152
           L   F  LE L L +  +        +  L  L KLK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLIS------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 153 RTLSLGYNRLKGSIDVKETLDNFTNLEDLTL 183
             L+L  N+LK  I   E L     L+ L L
Sbjct: 98  THLNLSGNKLK-DISTLEPLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 511 LEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 570
                +  L  LD  ++N        +    ++ + L    L   +          +  L
Sbjct: 21  RTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKL 76

Query: 571 DLSYNSFSGNIPYWIERLIRLRYLILANNNLE--GEVPNQLCGLKQLRLIDLSNN 623
           +LS N   G +    E+L  L +L L+ N L+    +   L  L+ L+ +DL N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 440 KKNYLRKLARLHLDANYFT-GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDI 498
           +      +  L LD      G+I    +    LE L + +  L     + L  L  L  +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKL 76

Query: 499 MMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
            ++ N + G + +   +L  L  L+LS N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 19/129 (14%)

Query: 174 NFTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQEL 232
               + +L LD    +   I    A F +L+ LS+ N  +          L +L  L++L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 233 HMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLK 292
            +  N + G L  L                L ++  L LS N+ +   +LEP   L  LK
Sbjct: 77  ELSENRIFGGLDMLAEK-------------LPNLTHLNLSGNKLKDISTLEPLKKLECLK 123

Query: 293 VFSGEFNEI 301
                  E+
Sbjct: 124 SLDLFNCEV 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 84/612 (13%), Positives = 168/612 (27%), Gaps = 180/612 (29%)

Query: 262 HL-TSIERLFLSYNQFQIPFSLEPF---FNLSKLK-----VFSG-EFNEIYVEPESSHST 311
           H+          Y    +    + F   F+   ++     + S  E + I +  ++   T
Sbjct: 6   HMDFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 312 TPKFQLESVSLSGSDIHATFP--------KFL-------YNQHDLELVDFSD--SNLKGE 354
                  ++     ++   F         KFL         Q  +    + +    L  +
Sbjct: 65  --LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 355 ---FP--------------NWL--LKNNPNL----------STL---VLRNNSLSGPFQT 382
              F                 L  L+   N+          + +   V  +  +      
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 383 PIQPHW--------------HLDAL--HVSKNFFQG-----NIPLEIGVYFPSHLAMGCF 421
            I   W               L  L   +  N+        NI L I             
Sbjct: 183 KI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI------------- 227

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLS-NCSRLEGLYMSDNN 480
           +     L        L   K Y   L  L L  N    +   + + +C  L  L      
Sbjct: 228 HSIQAELRR------LLKSKPYENCL--LVLL-NVQNAKAWNAFNLSCKIL--LTTRFKQ 276

Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEI--LDLSENNISGSLPSCSS 538
           +   + A      SL+   M     +         L YL+    DL    ++ +    S 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEV---KSLL-LKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 539 HSTIQQVHLS-----KNMLYGPLKYGTFFNRSSIVTLDLS-----YNSFS-----GNIPY 583
            +   +  L+     K++    L        SS+  L+ +     ++  S      +IP 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP- 388

Query: 584 WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG--------CLDN 635
               L      ++  + ++ +V   +  L +  L++         IP           + 
Sbjct: 389 -TILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 636 TSLHN---NGDNVGSSAP--TFNPNRRTTYF---VG---PSILEKEESIMFTTKEISFSY 684
            +LH    +  N+  +       P     YF   +G    +I   E   +F    + F +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRA----------------LNFSHNNLTG 728
                 K+     + N  +G I   + +L   +                 L+F       
Sbjct: 503 LE---QKIRHDSTAWNA-SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 729 VIPVSFSNLNQV 740
           +I   +++L ++
Sbjct: 559 LICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 90/598 (15%), Positives = 181/598 (30%), Gaps = 162/598 (27%)

Query: 20  GCLEQERSALLRLKHDFFNDPFNLE-NWVDDENHSDCCKWEGVECNTSTGRVKALYLSSK 78
             L  ++  +++    F  +   +   ++           +  E    +   + +Y   +
Sbjct: 69  WTLLSKQEEMVQ---KFVEEVLRINYKFLMS-------PIK-TEQRQPSMMTR-MY-IEQ 115

Query: 79  RQFLYSTA---GQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKL-LNLG 134
           R  LY+      + N S L P+ +L    L     A  V    ++ + G  K  + L++ 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNV---LIDGVLGSGKTWVALDVC 171

Query: 135 RNL-----FNNSIF-SSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSL 188
            +       +  IF  +L   +S  T+     +L   ID      N+T+  D + +   L
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIK-L 225

Query: 189 HISILKSIAAFTSLKRLSIQNGRVDGALG-DDEEGLCRLGHLQELHMGGNDLRGTLPCLY 247
            I  +++      L+RL       +  L   +   +              +L     C  
Sbjct: 226 RIHSIQA-----ELRRLLKSKPYENCLLVLLN---VQNAKAWNAF-----NLS----CKI 268

Query: 248 L-----NQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIY 302
           L      Q+T  +S++   H+ S++   ++    +             LK       ++ 
Sbjct: 269 LLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDE---VKSLL-----LKYLDCRPQDL- 318

Query: 303 VEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN 362
             P    +T P  +L  ++ S  D  AT+  + +   D +L    +S+L           
Sbjct: 319 --PREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLN---------- 364

Query: 363 NPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGV----------YF 412
              L     R                  D L V    F  +  +   +            
Sbjct: 365 --VLEPAEYRK---------------MFDRLSV----FPPSAHIPTILLSLIWFDVIKSD 403

Query: 413 PSHLAMGCFNLEYLVLSEN------SLHGQLFSKKNYLRKLARLH---LDA--------- 454
              +        Y ++ +       S+       K  L     LH   +D          
Sbjct: 404 VMVVVNKLHK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 455 ---------NYFTGEIPKSLSNCSRLE------GLYMSDNNLYGNI-------PARLGNL 492
                     YF   I   L N    E       +++    L   I        A    L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 493 SSLNDIMMASNHLQGPIPLEFCQL--NYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548
           ++L  +     ++    P ++ +L    L+ L   E N+      CS ++ + ++ L 
Sbjct: 522 NTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENL-----ICSKYTDLLRIALM 573

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 72/419 (17%), Positives = 133/419 (31%), Gaps = 51/419 (12%)

Query: 91  ASLLTPFQQLETLHLDSNNIAGFVENGGLERLS-GLSKLKLLNLGR--NLFNNSIFSSLA 147
            ++ + +  LE + L    +     +  LE ++      K+L L        + + +  A
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 148 GLSSLRTLSLGYNRLKGSID--VKETLDNFTNLEDLTLDYSSLHIS--ILKSIAAF-TSL 202
              +L+ L L  + +       +    D +T+L  L +   +  +S   L+ +     +L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-----------CLYLNQL 251
           K L +        L      L R   L+EL  GG                   C  L  L
Sbjct: 214 KSLKLNRAVPLEKLA---TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 252 TG--NISSSPLIHL----TSIERLFLSYNQFQIPFSLEPFFNLSKLKVFS--GEFNEIYV 303
           +G  +   + L  +    + +  L LSY   Q    ++      KL+         +  +
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN 363
           E  +S        L  + +  S+     P     +  L  V      L+      +L   
Sbjct: 331 EVLASTCK----DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-----SVLYFC 381

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
             ++   L   + + P  T       L  +      +    PL+IG      +   C +L
Sbjct: 382 RQMTNAALITIARNRPNMTRF----RLCIIEPKAPDYLTLEPLDIGF---GAIVEHCKDL 434

Query: 424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGE-IPKSLSNCSRLEGLYMSDNNL 481
             L LS             Y +K+  L +     +   +   LS C  L  L + D   
Sbjct: 435 RRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 74/518 (14%), Positives = 158/518 (30%), Gaps = 88/518 (16%)

Query: 75  LSSKRQFLYSTAGQLNASLLTPFQQLETLHLD-----------SNNIAGFVENGGLERLS 123
              ++ F+ +      A+++  F ++ ++ L             +   G+V        S
Sbjct: 43  WCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102

Query: 124 GLSKLKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
             + L+ + L R +  +     +A    + + L L       +  +        NL++L 
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 183 LDYSSLHISILKSIAAF----TSLKRLSIQNGRVDGALGDDEEGLCRLGH----LQELHM 234
           L  S +       ++ F    TSL  L+I     +  +      L RL      L+ L +
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE--VSF--SALERLVTRCPNLKSLKL 218

Query: 235 GGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVF 294
                      + L +L   +  +P +                            +L+  
Sbjct: 219 NR--------AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 295 SGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI----HATFPKFLYNQHDLELVD-FSDS 349
           SG ++ +     + +S   +  L +++LS + +                 L ++D   D+
Sbjct: 271 SGFWDAVPAYLPAVYSVCSR--LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328

Query: 350 NLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIG 409
            L+      L     +L  L +                   +   +  N       L   
Sbjct: 329 GLEV-----LASTCKDLRELRVF----------------PSEPFVMEPNVALTEQGLV-- 365

Query: 410 VYFPSHLAMGCFNLEYLVLSENSLHGQ-LFSKKNYLRKLARLHL------DANYFTGEI- 461
                 ++MGC  LE ++     +    L +       + R  L        +Y T E  
Sbjct: 366 -----SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420

Query: 462 ----PKSLSNCSRLEGLYMS----DNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEF 513
                  + +C  L  L +S    D      I      +  L+ +  A +   G   +  
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFE-YIGTYAKKMEMLS-VAFAGDSDLGMHHV-L 477

Query: 514 CQLNYLEILDLSENNIS--GSLPSCSSHSTIQQVHLSK 549
              + L  L++ +        L + S   T++ + +S 
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 53/305 (17%), Positives = 108/305 (35%), Gaps = 31/305 (10%)

Query: 91  ASLLTPFQQLETLHLD--SNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148
           A+LL    QLE L     +  +   V +G    LSG  +L+ L+   +     + +  + 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAA-FTSLKRLSI 207
            S L TL+L Y  +  S D+ + L     L+ L +    +  + L+ +A+    L+ L +
Sbjct: 288 CSRLTTLNLSYATV-QSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRV 345

Query: 208 QNGRVDGALGD---DEEGLCRLG----HLQELHMGGNDL--RGTLPCLYLNQLTGNISSS 258
                     +    E+GL  +      L+ +      +          L  +  N  + 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA------LITIARNRPNM 399

Query: 259 PLIHLTSIERLFLSYNQFQI-----PFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
               L  IE     Y   +         +E   +L +L + SG   +   E   +++   
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTYAK-- 456

Query: 314 KFQLESVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLR 372
             ++E +S++ +          L     L  ++  D     +           + +L + 
Sbjct: 457 --KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

Query: 373 NNSLS 377
           + S+S
Sbjct: 515 SCSVS 519

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 53/181 (29%)

Query: 101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS----SLAGLSSLRTLS 156
             L L++N        G  ++L  L K+       N  NN I      +  G S +  + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKI-------NFSNNKITDIEEGAFEGASGVNEIL 87

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
           L  NRL+ ++  K       +L+ L L  + +                  + N    G  
Sbjct: 88  LTSNRLE-NVQHK-MFKGLESLKTLMLRSNRIT----------------CVGNDSFIG-- 127

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
                    L  ++ L             LY NQ+T  ++      L S+  L L  N F
Sbjct: 128 ---------LSSVRLLS------------LYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

Query: 277 Q 277
            
Sbjct: 166 N 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 26/181 (14%)

Query: 364 PNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFN 422
              + L L NN  +        +    L  ++ S N       +E G +     +     
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAF--EGAS----G 82

Query: 423 LEYLVLSEN---SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479
           +  ++L+ N   ++  ++F     L  L  L L +N  T     S    S +  L + DN
Sbjct: 83  VNEILLTSNRLENVQHKMFKG---LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 480 NLYGNIPAR-LGNLSSLNDIMMASNHLQGPIPLE-FCQLNYLEILDLSENNISGSLPSCS 537
            +   +       L SL+ + + +N      P    C L +L    L +  I    P C 
Sbjct: 140 QI-TTVAPGAFDTLHSLSTLNLLAN------PFNCNCYLAWLGEW-LRKKRIVTGNPRCQ 191

Query: 538 S 538
            
Sbjct: 192 K 192

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 520 EILDLSENNISGSLPSCSSH--STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
             L L+ N  +    +        +++++ S N +   ++ G F   S +  + L+ N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRL 93

Query: 578 SGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNT 636
             N+ + + + L  L+ L+L +N +     +   GL  +RL+ L +N +    PG  D  
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 637 S------LHNN 641
                  L  N
Sbjct: 153 HSLSTLNLLAN 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 93  LLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSL 152
           L     Q + +    N I        L+    L +LK L +  N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRK------LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 153 RTLSLGYNRLKGSIDVKETLDNFTNLEDLTL 183
             L L  N L   +   + L +  +L  L +
Sbjct: 91  TELILTNNSLV-ELGDLDPLASLKSLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580
           ++ L+   I       ++    +++ L    +  P+             +D S N     
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625
           +  +   L RL+ L++ NN +          L  L  + L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY--GNIPARLGNLSSLNDIMMA 501
             +   L L        I    +   + + +  SDN +      P     L  L  +++ 
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVN 72

Query: 502 SNHLQGPIPLEFCQLNYLEILDLSENNIS 530
           +N +          L  L  L L+ N++ 
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 21/142 (14%)

Query: 166 IDVKETLDNFTNLEDLTLDYSSLH-ISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLC 224
           I+      N     +L L    +  I  L +         +   +  +        +G  
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEIR-----KLDGFP 61

Query: 225 RLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP 284
            L  L+ L +  N +               I       L  +  L L+ N       L+P
Sbjct: 62  LLRRLKTLLVNNNRIC-------------RIGEGLDQALPDLTELILTNNSLVELGDLDP 108

Query: 285 FFNLSKLKVFSGEFNEIYVEPE 306
             +L  L       N +  +  
Sbjct: 109 LASLKSLTYLCILRNPVTNKKH 130

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 25/145 (17%)

Query: 101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA-----GLSSLRTL 155
             + L+ N I            S   KL+ ++L     NN I S LA     GL SL +L
Sbjct: 35  TEIRLEQNTIKVIPPGA----FSPYKKLRRIDLS----NNQI-SELAPDAFQGLRSLNSL 85

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDY---SSLHISILKSIAAFTSLKRLSIQNGRV 212
            L  N++   +  K   +   +L+ L L+    + L +   + +    +L  LS+ + ++
Sbjct: 86  VLYGNKIT-ELP-KSLFEGLFSLQLLLLNANKINCLRVDAFQDL---HNLNLLSLYDNKL 140

Query: 213 DGALGDDEEGLCRLGHLQELHMGGN 237
                  +     L  +Q +H+  N
Sbjct: 141 QTI---AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 520 EILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
             + L +N I   +P    S +  ++++ LS N +   L    F    S+ +L L  N  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI 92

Query: 578 SGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNT 636
           +  +P  + E L  L+ L+L  N +     +    L  L L+ L +N L     G     
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 637 S------LHNN 641
                  L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 88  QLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNL---FNNSIFS 144
            +     +P+++L  + L +N I+  +     +   GL  L  L L  N       S+F 
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ---GLRSLNSLVLYGNKITELPKSLFE 101

Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR 204
              GL SL+ L L  N++   +   +   +  NL  L+L  + L      + +   +++ 
Sbjct: 102 ---GLFSLQLLLLNANKIN-CLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 205 LSIQN 209
           + +  
Sbjct: 157 MHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 50/176 (28%)

Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP 508
            + L+ N      P + S   +L  + +S+N +   +                       
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDA------------------- 75

Query: 509 IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
               F  L  L  L L  N I+  LP                          F    S+ 
Sbjct: 76  ----FQGLRSLNSLVLYGNKIT-ELPK-----------------------SLFEGLFSLQ 107

Query: 569 TLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
            L L+ N  +  +     + L  L  L L +N L+         L+ ++ + L+ N
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL-----AGLSSLRTL 155
             L L+ N +     +G   RL  L KL        L  N + + +      G S ++ L
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKL-------ELKRNQL-TGIEPNAFEGASHIQEL 83

Query: 156 SLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIA--AFTSLKRLS 206
            LG N++K  I  K        L+ L     +L+ + +  +   +F  L  L+
Sbjct: 84  QLGENKIK-EISNK-MFLGLHQLKTL-----NLYDNQISCVMPGSFEHLNSLT 129

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 34/180 (18%)

Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA----RLGNLSSLNDIMMASNH 504
           +L L +         +    ++L  L +  N L   + A     L  L +L    +A+N 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLG---LANNQ 94

Query: 505 LQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR 564
           L       F  L  L+ L L  N +  SLPS                       G F   
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLK-SLPS-----------------------GVFDRL 130

Query: 565 SSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623
           + +  L L+ N    +IP    ++L  L+ L L+ N L+         L +L+ I L  N
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFN---NSIFSSLAGLSSLRTLSL 157
             L+LD N           + LS    L L++L  N  +   N  FS++   + L TL L
Sbjct: 34  TELYLDGNQFTLV-----PKELSNYKHLTLIDLSNNRISTLSNQSFSNM---TQLLTLIL 85

Query: 158 GYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSI--AAFTSLKRLS 206
            YNRL+  I  + T D   +L  L     SLH + +  +   AF  L  LS
Sbjct: 86  SYNRLR-CIPPR-TFDGLKSLRLL-----SLHGNDISVVPEGAFNDLSALS 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	829
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.87
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.82

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-87  Score=799.39  Aligned_cols=708  Identities=27%  Similarity=0.379  Sum_probs=500.5

Q ss_pred             cCCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccC
Q 037427           17 GTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTP   96 (829)
Q Consensus        17 ~~~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~   96 (829)
                      ++..+.++||+||++||+++.++. .+++|.   +++|||+|+||+|+  +|||++|+|++.++   .|....-+..+..
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l---~g~~~~l~~~l~~   75 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPL---NVGFSAVSSSLLS   75 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCC---CEEHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCc---CCccCccChhHhc
Confidence            455668999999999999998766 899996   46799999999998  69999999998865   2220001246788


Q ss_pred             CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchh--hhcCCCCCCEEEcCCCcCCccCCccccc-c
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS--SLAGLSSLRTLSLGYNRLKGSIDVKETL-D  173 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~L~~L~~L~Ls~n~i~~~~p~~~~l-~  173 (829)
                      +++|+.++++.+.+... +.    .++++++|++|||++|.+++.+|.  .++++++|++|+|++|.+.+.+|  ..+ .
T Consensus        76 L~~L~~l~~~~~~~~~l-~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~  148 (768)
T 3rgz_A           76 LTGLESLFLSNSHINGS-VS----GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK--VSGGL  148 (768)
T ss_dssp             CTTCCEEECTTSCEEEC-CC----CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS--CCSCC
T ss_pred             cCcccccCCcCCCcCCC-ch----hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC--HHHhc
Confidence            89999999998876542 22    389999999999999999998888  99999999999999999998877  344 8


Q ss_pred             CCCCCCEEecCCCCCCchhhHh---hhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcc
Q 037427          174 NFTNLEDLTLDYSSLHISILKS---IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQ  250 (829)
Q Consensus       174 ~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~  250 (829)
                      ++++|++|+|++|.+++..+..   +.++++|++|++++|.+.+..|     +..+++|++|++++|.+++.+|.     
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~-----  218 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNFSTGIPF-----  218 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEECCSSCCCSCCCB-----
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-----cccCCcCCEEECcCCcCCCCCcc-----
Confidence            9999999999999999988877   8899999999999999987653     47899999999999999986663     


Q ss_pred             cccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCC
Q 037427          251 LTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHAT  330 (829)
Q Consensus       251 ~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~  330 (829)
                               ++++++|++|++++|.+++.++ ..+.++++|+.|++++|.+...                          
T Consensus       219 ---------l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~--------------------------  262 (768)
T 3rgz_A          219 ---------LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGP--------------------------  262 (768)
T ss_dssp             ---------CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEES--------------------------
T ss_pred             ---------cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCc--------------------------
Confidence                     4889999999999999987655 4577888888877777766532                          


Q ss_pred             cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchh-hh
Q 037427          331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLE-IG  409 (829)
Q Consensus       331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~-~~  409 (829)
                      +|..  .+++|++|++++|++.+.+|..+...+++|++|++++|.+++..|..+..+++|++|++++|.++|.+|.. +.
T Consensus       263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~  340 (768)
T 3rgz_A          263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL  340 (768)
T ss_dssp             CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred             cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence            2222  44455555555555555555543333355555555555555555555555555555555555555555543 22


Q ss_pred             hccccccccCCCcccEEEcccccccccCcccccccc-CCcEEecccccCCCccCccCCC--CCCCcEEECCCCcCCCCcc
Q 037427          410 VYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR-KLARLHLDANYFTGEIPKSLSN--CSRLEGLYMSDNNLYGNIP  486 (829)
Q Consensus       410 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~p  486 (829)
                               .+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..  +++|++|++++|++++.+|
T Consensus       341 ---------~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  411 (768)
T 3rgz_A          341 ---------KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP  411 (768)
T ss_dssp             ---------TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred             ---------cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence                     234566666666666655666555555 6666666666666655555544  5566666666666666666


Q ss_pred             cccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCC
Q 037427          487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRS  565 (829)
Q Consensus       487 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~  565 (829)
                      ..+.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+ .+++|++|++++|++.+.+|.. +.+++
T Consensus       412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~  490 (768)
T 3rgz_A          412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCT  490 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCT
T ss_pred             HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCC
Confidence            666666666666666666666666666666666666666666666666555 5666666666666666666655 67777


Q ss_pred             CccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCC
Q 037427          566 SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNV  645 (829)
Q Consensus       566 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  645 (829)
                      +|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+............
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~  570 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI  570 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence            77777777777777777777777777777777777777777777777777777777777777777665543211000000


Q ss_pred             C--------CC-CCCC-CCCCccceecCCCccc-----cccceeeecccc--eeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427          646 G--------SS-APTF-NPNRRTTYFVGPSILE-----KEESIMFTTKEI--SFSYKGKPLNKMYGVDLSCNKLTGEIPP  708 (829)
Q Consensus       646 ~--------~~-~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  708 (829)
                      .        .. .... ........+.+.....     ......+.....  ........+++|+.|||++|+++|.+|.
T Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~  650 (768)
T 3rgz_A          571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK  650 (768)
T ss_dssp             CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence            0        00 0000 0000000011111000     000000000000  0011123467899999999999999999


Q ss_pred             ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCCCC
Q 037427          709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKT  788 (829)
Q Consensus       709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~  788 (829)
                      .++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|+.+..+++|++||+++|+|+|.||++++|....
T Consensus       651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  730 (768)
T 3rgz_A          651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP  730 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred             HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999885433


Q ss_pred             --cCCCCCCccc
Q 037427          789 --WPCNGDYQCR  798 (829)
Q Consensus       789 --~~~~~~~~~~  798 (829)
                        ...++.++|.
T Consensus       731 ~~~~~gN~~Lcg  742 (768)
T 3rgz_A          731 PAKFLNNPGLCG  742 (768)
T ss_dssp             GGGGCSCTEEES
T ss_pred             HHHhcCCchhcC
Confidence              2234555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-71  Score=663.90  Aligned_cols=596  Identities=27%  Similarity=0.343  Sum_probs=533.4

Q ss_pred             ccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh-cCCCCCCEEEcCCCcCCccCCccc
Q 037427           92 SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL-AGLSSLRTLSLGYNRLKGSIDVKE  170 (829)
Q Consensus        92 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~L~~L~~L~Ls~n~i~~~~p~~~  170 (829)
                      ..+..+++|++|||++|.+.+.++..  ..++++++|++|+|++|.+.+.+|..+ .++++|++|+|++|.+++..|  .
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~  169 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV--V  169 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH--H
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC--h
Confidence            46889999999999999999877651  138999999999999999988888766 899999999999999998766  4


Q ss_pred             c---ccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-Cc
Q 037427          171 T---LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CL  246 (829)
Q Consensus       171 ~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l  246 (829)
                      .   +.++++|++|++++|.+++..+  +..+++|++|++++|.+.+.+|.    ++++++|++|++++|.+++.+| .+
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB----CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             hhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc----cccCCCCCEEECcCCcCCCcccHHH
Confidence            4   8899999999999999987765  48999999999999999987664    8899999999999999998777 55


Q ss_pred             cCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCC
Q 037427          247 YLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD  326 (829)
Q Consensus       247 ~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~  326 (829)
                                    ..+++|++|++++|.+.+.++..   .+++|+.|++++|.+........ .....+|++|++++|.
T Consensus       244 --------------~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          244 --------------STCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNH  305 (768)
T ss_dssp             --------------TTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSE
T ss_pred             --------------hcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH-HhhcCcCCEEECcCCc
Confidence                          88999999999999999877653   89999999999999984322211 1123689999999999


Q ss_pred             CCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCC-CCCEEEccCCcccccCc
Q 037427          327 IHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW-HLDALHVSKNFFQGNIP  405 (829)
Q Consensus       327 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~ip  405 (829)
                      +.+.+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|
T Consensus       306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~  385 (768)
T 3rgz_A          306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL  385 (768)
T ss_dssp             EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred             CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence            99999999999999999999999999999988788999999999999999998999888887 99999999999999888


Q ss_pred             hhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCc
Q 037427          406 LEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI  485 (829)
Q Consensus       406 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  485 (829)
                      ..+...       .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+
T Consensus       386 ~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  458 (768)
T 3rgz_A          386 PNLCQN-------PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI  458 (768)
T ss_dssp             TTTTCS-------TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             hhhhhc-------ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence            765431       2468999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCC
Q 037427          486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNR  564 (829)
Q Consensus       486 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l  564 (829)
                      |..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ .+++|++|++++|++.+.+|.. +..+
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l  537 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDC  537 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGC
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCC
Confidence            9999999999999999999999999999999999999999999999999887 8999999999999999999987 9999


Q ss_pred             CCccEEEccCCcCCCcchhhhhcCCCCC----------------------------------------------EEEccC
Q 037427          565 SSIVTLDLSYNSFSGNIPYWIERLIRLR----------------------------------------------YLILAN  598 (829)
Q Consensus       565 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----------------------------------------------~L~L~~  598 (829)
                      ++|++|++++|+++|.+|.++.....+.                                              .++++.
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            9999999999999999998876644333                                              234455


Q ss_pred             CcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427          599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK  678 (829)
Q Consensus       599 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (829)
                      |.+.|.+|..+..+++|+.||+++|+++|.+|..++++.                                         
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-----------------------------------------  656 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-----------------------------------------  656 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT-----------------------------------------
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccc-----------------------------------------
Confidence            788888999999999999999999999999999888766                                         


Q ss_pred             cceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccc
Q 037427          679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL  758 (829)
Q Consensus       679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l  758 (829)
                                  .|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++|||++|+++|.||+. 
T Consensus       657 ------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-  723 (768)
T 3rgz_A          657 ------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-  723 (768)
T ss_dssp             ------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-
T ss_pred             ------------cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-
Confidence                        8999999999999999999999999999999999999999999999999999999999999999975 


Q ss_pred             ccCCCCcEEeccCCc-ceee
Q 037427          759 VELNALVVFSVAHNN-LSAA  777 (829)
Q Consensus       759 ~~l~~L~~L~ls~N~-l~g~  777 (829)
                      ..+..+....+.+|+ |+|.
T Consensus       724 ~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          724 GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SSGGGSCGGGGCSCTEEEST
T ss_pred             hhhccCCHHHhcCCchhcCC
Confidence            334555666778884 7774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.7e-61  Score=566.14  Aligned_cols=578  Identities=21%  Similarity=0.216  Sum_probs=442.9

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN  177 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~  177 (829)
                      +++++|+|++|.+++..+..    |.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..+  ..|+++++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGG----GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TTTTTCTT
T ss_pred             CCCcEEECCCCCCCCcCHHH----HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hhhccCCC
Confidence            67888888888887766543    7778888888888888887778888888888888888888774333  46788888


Q ss_pred             CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccC
Q 037427          178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNIS  256 (829)
Q Consensus       178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~  256 (829)
                      |++|++++|.+++..+..|+++++|++|++++|.+.+..|.   .++++++|++|++++|.+++..| .+          
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~----------  165 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKSEEL----------  165 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCHHHH----------
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCHHHh----------
Confidence            88888888888777777788888888888888887776666   56777888888888887765433 11          


Q ss_pred             CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427          257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY  336 (829)
Q Consensus       257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~  336 (829)
                        .+..+++|++|++++|.+++..+ ..+..++                          +|+.++++++.+.......+.
T Consensus       166 --~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~--------------------------~L~~L~l~~~~l~~~~~~~~~  216 (680)
T 1ziw_A          166 --DIFANSSLKKLELSSNQIKEFSP-GCFHAIG--------------------------RLFGLFLNNVQLGPSLTEKLC  216 (680)
T ss_dssp             --GGGTTCEESEEECTTCCCCCBCT-TGGGGSS--------------------------EECEEECTTCCCHHHHHHHHH
T ss_pred             --hccccccccEEECCCCcccccCh-hhhhhhh--------------------------hhhhhhccccccChhhHHHHH
Confidence              01245677777777777764332 3344443                          455566666665432222211


Q ss_pred             ---CCCCcCEEEcCCCCCCCCCchHHhhcCC--CCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhc
Q 037427          337 ---NQHDLELVDFSDSNLKGEFPNWLLKNNP--NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVY  411 (829)
Q Consensus       337 ---~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~  411 (829)
                         ..++|+.|++++|.+.+..|.+ +..++  +|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.  
T Consensus       217 ~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--  293 (680)
T 1ziw_A          217 LELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH--  293 (680)
T ss_dssp             HHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT--
T ss_pred             HHhhhccccEEEccCCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc--
Confidence               3478999999999998777766 55564  499999999999988888899999999999999999876655443  


Q ss_pred             cccccccCCCcccEEEcccccccc-----cCcc----ccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCC
Q 037427          412 FPSHLAMGCFNLEYLVLSENSLHG-----QLFS----KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY  482 (829)
Q Consensus       412 l~~~~~~~~~~L~~L~L~~n~l~~-----~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  482 (829)
                             ++++|++|++++|...+     .+|.    .+..+++|++|++++|.+++..+..|.++++|++|++++|.+.
T Consensus       294 -------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          294 -------GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             -------TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred             -------CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence                   46799999999876543     2222    5778899999999999999888888999999999999999764


Q ss_pred             CCc--ccccCC--CCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCC-CC-CCCcccEEEccCCcccCcC
Q 037427          483 GNI--PARLGN--LSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS-CS-SHSTIQQVHLSKNMLYGPL  556 (829)
Q Consensus       483 ~~~--p~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~  556 (829)
                      ...  +..+..  .++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|. .+ .+++|++|++++|++.+..
T Consensus       367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  446 (680)
T 1ziw_A          367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT  446 (680)
T ss_dssp             CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred             hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence            322  222332  35899999999999988888899999999999999999877764 33 7889999999999986655


Q ss_pred             CccccCCCCCccEEEccCCcCC--CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCcc
Q 037427          557 KYGTFFNRSSIVTLDLSYNSFS--GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD  634 (829)
Q Consensus       557 ~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  634 (829)
                      +.. |..+++|+.|++++|.+.  +..|..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..+.
T Consensus       447 ~~~-~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  525 (680)
T 1ziw_A          447 RNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP  525 (680)
T ss_dssp             TTT-TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred             hhh-hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence            544 888999999999999886  56788899999999999999999987778899999999999999998764332211


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCC
Q 037427          635 NTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT  714 (829)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  714 (829)
                      ....                                             .....+++|+.|+|++|+++...+..|.+++
T Consensus       526 ~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          526 GGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            1000                                             0002345889999999999955555789999


Q ss_pred             CCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccc-cCCCCcEEeccCCcceeecC
Q 037427          715 NIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV-ELNALVVFSVAHNNLSAAER  779 (829)
Q Consensus       715 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip  779 (829)
                      +|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+.-+
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999999999987777888999999999999999988877777 78899999999998886543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.8e-59  Score=552.08  Aligned_cols=584  Identities=20%  Similarity=0.209  Sum_probs=470.0

Q ss_pred             CCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh
Q 037427           67 TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL  146 (829)
Q Consensus        67 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  146 (829)
                      ..+|+.|+|+++.+.      .+.+..|.++++|++|+|++|.+++..+..    +.++++|++|+|++|.+++..+.+|
T Consensus        24 ~~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~   93 (680)
T 1ziw_A           24 PTNITVLNLTHNQLR------RLPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTF   93 (680)
T ss_dssp             CTTCSEEECCSSCCC------CCCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCcEEECCCCCCC------CcCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhh
Confidence            458999999998752      245567899999999999999999887764    8899999999999999997766789


Q ss_pred             cCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCC
Q 037427          147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRL  226 (829)
Q Consensus       147 ~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l  226 (829)
                      +++++|++|+|++|.+++..|  ..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+ ....+
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~  170 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL-DIFAN  170 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTT
T ss_pred             ccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh-hcccc
Confidence            999999999999999987655  689999999999999999999989999999999999999999987655411 13356


Q ss_pred             CCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccC
Q 037427          227 GHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPE  306 (829)
Q Consensus       227 ~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  306 (829)
                      ++|++|++++|.+++..|             ..+..+++|+.|+++++.+.+..... +..                   
T Consensus       171 ~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~-------------------  217 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSP-------------GCFHAIGRLFGLFLNNVQLGPSLTEK-LCL-------------------  217 (680)
T ss_dssp             CEESEEECTTCCCCCBCT-------------TGGGGSSEECEEECTTCCCHHHHHHH-HHH-------------------
T ss_pred             ccccEEECCCCcccccCh-------------hhhhhhhhhhhhhccccccChhhHHH-HHH-------------------
Confidence            899999999999986554             33478899999999998876322111 000                   


Q ss_pred             CCCCCCCCcCccEEEccCCCCCCCcChhhhCCCC--cCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCC
Q 037427          307 SSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD--LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPI  384 (829)
Q Consensus       307 ~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~--L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~  384 (829)
                          .....+|++|++++|.+.+..|.++..++.  |++|++++|++.+..|.. ++.+++|++|++++|.+++..+..+
T Consensus       218 ----~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~  292 (680)
T 1ziw_A          218 ----ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSL  292 (680)
T ss_dssp             ----HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTT
T ss_pred             ----HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhh
Confidence                001125667777777777777777777654  888888888887555554 6778888888888888888777788


Q ss_pred             CCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCc--cC
Q 037427          385 QPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGE--IP  462 (829)
Q Consensus       385 ~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~  462 (829)
                      ..+++|+.|++++|...+.++..-...+....+..+++|++|++++|.+++..+..+..+++|++|++++|.+...  .+
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~  372 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN  372 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred             cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence            8888888888887766553331111112233455678999999999999988888888999999999999876432  12


Q ss_pred             ccCCC--CCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCcccCCCCC-C
Q 037427          463 KSLSN--CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISGSLPSCS-S  538 (829)
Q Consensus       463 ~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~  538 (829)
                      ..|..  .++|+.|++++|++++..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++.+..+..+ .
T Consensus       373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  452 (680)
T 1ziw_A          373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL  452 (680)
T ss_dssp             TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT
T ss_pred             hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc
Confidence            23332  2589999999999998888899999999999999999987655 678899999999999999987777666 7


Q ss_pred             CCcccEEEccCCccc--CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC--------cc
Q 037427          539 HSTIQQVHLSKNMLY--GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP--------NQ  608 (829)
Q Consensus       539 ~~~L~~L~L~~n~l~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~  608 (829)
                      +++|+.|++++|.+.  +.+|.. +..+++|++|++++|++++..+..+.++++|++|++++|++++..+        ..
T Consensus       453 ~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  531 (680)
T 1ziw_A          453 VPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF  531 (680)
T ss_dssp             CTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred             CcccccchhccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence            889999999999886  456665 8999999999999999998888889999999999999999986422        23


Q ss_pred             cCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCC
Q 037427          609 LCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKP  688 (829)
Q Consensus       609 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (829)
                      +.++++|++|++++|+++...+..|..+.                                                   
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~---------------------------------------------------  560 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLF---------------------------------------------------  560 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCT---------------------------------------------------
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHccccc---------------------------------------------------
Confidence            78899999999999999844334455544                                                   


Q ss_pred             CCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccc-ccccCCeeecCCCcCcccCC
Q 037427          689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS-NLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       689 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~~~ip  755 (829)
                        +|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++|++....+
T Consensus       561 --~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          561 --ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             --TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             --CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence              899999999999987777889999999999999999999988888 78999999999999987554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.9e-55  Score=508.69  Aligned_cols=521  Identities=19%  Similarity=0.184  Sum_probs=374.4

Q ss_pred             CCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCC
Q 037427           99 QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNL  178 (829)
Q Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L  178 (829)
                      .+++|+|++|.+++..+.+    |.++++|++|+|++|.+.+..|.+|+++++|++|+|++|.+++..|  ..|+++++|
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L  107 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE--TALSGPKAL  107 (606)
T ss_dssp             TCCEEECTTCCCSEECTTT----STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT--TTTSSCTTC
T ss_pred             cCcEEEccCCccCcCChhH----hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh--hhhcccccc
Confidence            5667777777766655543    6666667777777666666666666666666666666666665545  556666666


Q ss_pred             CEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCC
Q 037427          179 EDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSS  258 (829)
Q Consensus       179 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~  258 (829)
                      ++|++++|.+++..+..++++++|++|++++|.+.+..+.   .+..+++|++|++++|.+++..|             .
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-------------~  171 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP---KGFPTEKLKVLDFQNNAIHYLSK-------------E  171 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC---TTCCCTTCCEEECCSSCCCEECH-------------H
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc---cccCCcccCEEEcccCcccccCh-------------h
Confidence            6666666666655555566666666666666655543211   22335555555555555543222             1


Q ss_pred             CCCCCCCCC--EEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427          259 PLIHLTSIE--RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY  336 (829)
Q Consensus       259 ~l~~l~~L~--~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~  336 (829)
                      .++.+++|+  .|++++|.+.+                                                   ..|..+.
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~---------------------------------------------------~~~~~~~  200 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAG---------------------------------------------------IEPGAFD  200 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCE---------------------------------------------------ECTTTTT
T ss_pred             hhhhhcccceeEEecCCCccCc---------------------------------------------------cChhHhh
Confidence            113334444  34444444332                                                   2222222


Q ss_pred             CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427          337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL  416 (829)
Q Consensus       337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~  416 (829)
                      . .+|+.|++++|.   .++.. +..+.+++...+....+.+           +...++....+.     .+..      
T Consensus       201 ~-~~L~~L~l~~~~---~~~~~-~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~~-----~l~~------  253 (606)
T 3t6q_A          201 S-AVFQSLNFGGTQ---NLLVI-FKGLKNSTIQSLWLGTFED-----------MDDEDISPAVFE-----GLCE------  253 (606)
T ss_dssp             T-CEEEEEECTTCS---CHHHH-HHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGGG-----GGGG------
T ss_pred             h-ccccccccCCch---hHHHH-hhhccccchhheechhhcc-----------ccccccChhHhc-----hhhc------
Confidence            1 345555555554   22322 3445554444433322221           111111111111     1110      


Q ss_pred             ccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCC
Q 037427          417 AMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLN  496 (829)
Q Consensus       417 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  496 (829)
                          .+|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|++.+..|..+..+++|+
T Consensus       254 ----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  328 (606)
T 3t6q_A          254 ----MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT  328 (606)
T ss_dssp             ----SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred             ----CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence                27889999999998888888889999999999999998 6788889999999999999999988788899999999


Q ss_pred             EEEccCCcccCCChh-hhhCCCCCCEEeCCCCcCcccC--CCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427          497 DIMMASNHLQGPIPL-EFCQLNYLEILDLSENNISGSL--PSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL  572 (829)
Q Consensus       497 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  572 (829)
                      +|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+ .+++|++|++++|++.+..+.. +..+++|++|++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l  407 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDL  407 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEEC
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEEC
Confidence            999999998866654 4888999999999999998664  4444 8899999999999997766655 889999999999


Q ss_pred             cCCcCCCcchh-hhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCC-C--CCccCCCccCCCCCCCCC
Q 037427          573 SYNSFSGNIPY-WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQI-P--GCLDNTSLHNNGDNVGSS  648 (829)
Q Consensus       573 s~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p--~~~~~~~~~~~~~~~~~~  648 (829)
                      ++|++.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.. |  ..+..             
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-------------  474 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-------------  474 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------
Confidence            99999877654 4889999999999999999888999999999999999999997632 2  22332             


Q ss_pred             CCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCC
Q 037427          649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG  728 (829)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  728 (829)
                                                              +++|+.|++++|++++.+|..|+.+++|++|+|++|++++
T Consensus       475 ----------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          475 ----------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             ----------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence                                                    3489999999999999999999999999999999999999


Q ss_pred             CccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecC
Q 037427          729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAER  779 (829)
Q Consensus       729 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  779 (829)
                      .+|+.+.++++| .|||++|++++.+|..+..+++|+++++++|++++..+
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999 99999999999999999999999999999999998655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-54  Score=501.71  Aligned_cols=523  Identities=21%  Similarity=0.205  Sum_probs=388.3

Q ss_pred             CCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh
Q 037427           67 TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL  146 (829)
Q Consensus        67 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  146 (829)
                      +..++.|+|+++.+.      .+.+..|..+++|++|+|++|.+.+..+.+    |.++++|++|+|++|.+++..|..|
T Consensus        32 ~~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           32 PNSTECLEFSFNVLP------TIQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             CTTCCEEECTTCCCS------EECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             CCcCcEEEccCCccC------cCChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhh
Confidence            357999999998763      245667899999999999999999887765    8999999999999999999889999


Q ss_pred             cCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCC
Q 037427          147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRL  226 (829)
Q Consensus       147 ~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l  226 (829)
                      +++++|++|++++|.+++..|  ..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..|.   .++.+
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l  176 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE---DMSSL  176 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH---HHHTT
T ss_pred             cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh---hhhhh
Confidence            999999999999999996544  6799999999999999999986545566699999999999999987666   78888


Q ss_pred             CCCc--EEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeec
Q 037427          227 GHLQ--ELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE  304 (829)
Q Consensus       227 ~~L~--~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~  304 (829)
                      ++|+  +|++++|.+++..|..              ....+|+.|++++|...   + ..+..+..++..          
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~--------------~~~~~L~~L~l~~~~~~---~-~~~~~l~~~~l~----------  228 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGA--------------FDSAVFQSLNFGGTQNL---L-VIFKGLKNSTIQ----------  228 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTT--------------TTTCEEEEEECTTCSCH---H-HHHHHTTTCEEE----------
T ss_pred             cccceeEEecCCCccCccChhH--------------hhhccccccccCCchhH---H-HHhhhccccchh----------
Confidence            9999  8999999999765522              34468999999988622   1 223333333222          


Q ss_pred             cCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCC--CCCEEEccCCcCcCCCCC
Q 037427          305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP--NLSTLVLRNNSLSGPFQT  382 (829)
Q Consensus       305 ~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~  382 (829)
                                    .+.+....             .+..     .    .++...+..+.  +|++|++++|.+++..+.
T Consensus       229 --------------~l~~~~~~-------------~~~~-----~----~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          229 --------------SLWLGTFE-------------DMDD-----E----DISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             --------------EEECCCCT-------------TSCC-----C----CCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             --------------heechhhc-------------cccc-----c----ccChhHhchhhcCceeEEEeecCccCccCHH
Confidence                          22221110             0110     1    11111122222  566666666666665555


Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccC
Q 037427          383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP  462 (829)
Q Consensus       383 ~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  462 (829)
                      .+..+++|++|++++|.++ .+|..+.         ++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLV---------GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCC---------SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             HhccccCCCEEeccCCccC-CCChhhc---------ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            5666666666666666665 3443322         24566777777777666666666777777777777777765544


Q ss_pred             c-cCCCCCCCcEEECCCCcCCCCc--ccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCC
Q 037427          463 K-SLSNCSRLEGLYMSDNNLYGNI--PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH  539 (829)
Q Consensus       463 ~-~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  539 (829)
                      . .+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.         
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------  413 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK---------  413 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE---------
T ss_pred             hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC---------
Confidence            3 3666777777777777776544  455666666666666666666555556666666666666666555         


Q ss_pred             CcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc---CCcccCCCCCCC
Q 037427          540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE---VPNQLCGLKQLR  616 (829)
Q Consensus       540 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~  616 (829)
                                    +..+...+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+..+++|+
T Consensus       414 --------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          414 --------------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             --------------CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             --------------CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence                          333333467788888888888888888888888888999999999988762   235688899999


Q ss_pred             EEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEE
Q 037427          617 LIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVD  696 (829)
Q Consensus       617 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  696 (829)
                      +|++++|++++..|..+..++                                                     +|+.|+
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~  506 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLK-----------------------------------------------------MMNHVD  506 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCT-----------------------------------------------------TCCEEE
T ss_pred             EEECCCCccCccChhhhcccc-----------------------------------------------------CCCEEE
Confidence            999999999888787776554                                                     788999


Q ss_pred             cCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427          697 LSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       697 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                      +++|++++.+|..+..++.| .|++++|++++.+|..+..+++|+.|++++|++.+..+
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999 99999999999999999999999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.9e-54  Score=500.85  Aligned_cols=524  Identities=19%  Similarity=0.201  Sum_probs=323.2

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN  177 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~  177 (829)
                      ++|++|+|++|.+++..+..    |.++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..|  ..|+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP--GSFSGLTS  105 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT--TSSTTCTT
T ss_pred             CCcCEEECCCCCcCEeChhh----ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh--hhcCCccc
Confidence            56666777776666655543    6666666666666666666666666666666666666666665545  55666666


Q ss_pred             CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCcc-ccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccC
Q 037427          178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDG-ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS  256 (829)
Q Consensus       178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~  256 (829)
                      |++|++++|.+++..+..++++++|++|++++|.+.+ .+|.   .++++++|++|++++|.+++..|            
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~Ls~n~l~~~~~------------  170 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA---YFSNLTNLVHVDLSYNYIQTITV------------  170 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG---GGGTCTTCCEEECCSSCCCEECT------------
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH---hHhhcCCCCEEEccCCcceecCh------------
Confidence            6666666666665555556666666666666665554 2344   45555555555555555553222            


Q ss_pred             CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427          257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY  336 (829)
Q Consensus       257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~  336 (829)
                                                ..+..+++|+.                      .+++|++++|.+.+..+..+.
T Consensus       171 --------------------------~~~~~l~~L~~----------------------~l~~L~l~~n~l~~~~~~~~~  202 (606)
T 3vq2_A          171 --------------------------NDLQFLRENPQ----------------------VNLSLDMSLNPIDFIQDQAFQ  202 (606)
T ss_dssp             --------------------------TTTHHHHHCTT----------------------CCCEEECTTCCCCEECTTTTT
T ss_pred             --------------------------hhhhhhhcccc----------------------ccceeeccCCCcceeCccccc
Confidence                                      12222222220                      012223333333222222222


Q ss_pred             CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427          337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL  416 (829)
Q Consensus       337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~  416 (829)
                      .. +|+.|++++|.+.+...+..+++++.++.+++..+.+.+...        +..       +.+..+..+..      
T Consensus       203 ~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------l~~-------~~~~~~~~l~~------  260 (606)
T 3vq2_A          203 GI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--------LEI-------FEPSIMEGLCD------  260 (606)
T ss_dssp             TC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC--------CSC-------CCGGGGTTGGG------
T ss_pred             Cc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc--------ccc-------cChHHhhhhhh------
Confidence            22 455555665555433333335566666666655444332100        000       00011111110      


Q ss_pred             ccCCCcccEEEc-ccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCC
Q 037427          417 AMGCFNLEYLVL-SENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL  495 (829)
Q Consensus       417 ~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  495 (829)
                          ..++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|
T Consensus       261 ----l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L  330 (606)
T 3vq2_A          261 ----VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFL  330 (606)
T ss_dssp             ----SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSC
T ss_pred             ----ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCcc
Confidence                13455555 44455555554 555666666666666665 334 556666666666666666 3555 33 66666


Q ss_pred             CEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccC--CCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427          496 NDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL--PSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL  572 (829)
Q Consensus       496 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  572 (829)
                      ++|++++|...+..  .+..+++|++|++++|.+++..  |..+ .+++|++|++++|.+.+ +|.. +..+++|++|++
T Consensus       331 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~l  406 (606)
T 3vq2_A          331 KSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN-FMGLEELQHLDF  406 (606)
T ss_dssp             CEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC-CTTCTTCCEEEC
T ss_pred             ceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh-ccCCCCCCeeEC
Confidence            66666666443322  3456666666666666665442  3333 55666666666666643 4433 777888888888


Q ss_pred             cCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccC-CCCCccCCCccCCCCCCCCCCC
Q 037427          573 SYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ-IPGCLDNTSLHNNGDNVGSSAP  650 (829)
Q Consensus       573 s~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~  650 (829)
                      ++|++.+..| ..+..+++|++|++++|++++..|..+.++++|++|++++|++++. +|..++.+.             
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------  473 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-------------  473 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-------------
Confidence            8888877766 5677888888888888888877888888888888888888888763 566555544             


Q ss_pred             CCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCc
Q 037427          651 TFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI  730 (829)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  730 (829)
                                                              +|++|++++|++++.+|..++.+++|++|+|++|++++.+
T Consensus       474 ----------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  513 (606)
T 3vq2_A          474 ----------------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD  513 (606)
T ss_dssp             ----------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred             ----------------------------------------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence                                                    7888888888888888888888999999999999999888


Q ss_pred             cccccccccCCeeecCCCcCcccCCcccccCC-CCcEEeccCCcceeecCC
Q 037427          731 PVSFSNLNQVESLDVSHNNLNGKIPPQLVELN-ALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       731 p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~  780 (829)
                      |..|+++++|+.|||++|+++ .+|..+..++ +|+++++++|++.+..+.
T Consensus       514 ~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          514 SSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             GGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             HHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            888998999999999999988 6777788886 599999999998876553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-53  Score=496.80  Aligned_cols=532  Identities=19%  Similarity=0.221  Sum_probs=373.7

Q ss_pred             cEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427          101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED  180 (829)
Q Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~  180 (829)
                      ++++.+++.++.....     +.  ++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|  ..|+++++|++
T Consensus        14 ~~~~c~~~~l~~ip~~-----~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~--~~~~~l~~L~~   84 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDD-----IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED--KAWHGLHHLSN   84 (606)
T ss_dssp             TEEECTTSCCSSCCTT-----SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCE
T ss_pred             CceEccCCCcccCCCC-----CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH--HHhhchhhcCE
Confidence            5677777777654432     22  567777777777776666677777777777777777765544  55666666666


Q ss_pred             EecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCcc-ccCCccCcccccccCCCC
Q 037427          181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG-TLPCLYLNQLTGNISSSP  259 (829)
Q Consensus       181 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g-~~p~l~~~~~~g~i~~~~  259 (829)
                      |+|++|.+++..|..|+++++|++|++++|.+.+..+.   .++++++|++|++++|.+++ .+|             ..
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~lp-------------~~  148 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF---PIGQLITLKKLNVAHNFIHSCKLP-------------AY  148 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS---CCTTCTTCCEEECCSSCCCCCCCC-------------GG
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCcccccccc---ccCCCCCCCEEeCCCCcccceech-------------Hh
Confidence            66666666666566666666666666666665544333   45555555555555555442 222             11


Q ss_pred             CCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCC
Q 037427          260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH  339 (829)
Q Consensus       260 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~  339 (829)
                      ++++++|++|++++|+++                                                   +..|..+..++
T Consensus       149 ~~~l~~L~~L~Ls~n~l~---------------------------------------------------~~~~~~~~~l~  177 (606)
T 3vq2_A          149 FSNLTNLVHVDLSYNYIQ---------------------------------------------------TITVNDLQFLR  177 (606)
T ss_dssp             GGTCTTCCEEECCSSCCC---------------------------------------------------EECTTTTHHHH
T ss_pred             HhhcCCCCEEEccCCcce---------------------------------------------------ecChhhhhhhh
Confidence            133333333333333221                                                   12222222222


Q ss_pred             C----cCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCccccc-Cchhhhhcccc
Q 037427          340 D----LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN-IPLEIGVYFPS  414 (829)
Q Consensus       340 ~----L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-ip~~~~~~l~~  414 (829)
                      +    +.+|++++|.+. .+|..                        .+... +|++|++++|.+.+. +|..+.     
T Consensus       178 ~L~~~l~~L~l~~n~l~-~~~~~------------------------~~~~~-~L~~L~L~~n~~~~~~~~~~~~-----  226 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPID-FIQDQ------------------------AFQGI-KLHELTLRGNFNSSNIMKTCLQ-----  226 (606)
T ss_dssp             HCTTCCCEEECTTCCCC-EECTT------------------------TTTTC-EEEEEEEESCCSCHHHHHHHHH-----
T ss_pred             ccccccceeeccCCCcc-eeCcc------------------------cccCc-eeeeeeccCCccchhHHHHHhc-----
Confidence            2    235555555554 23332                        22222 445555555544422 222221     


Q ss_pred             ccccCCCcccEEEcccccccc---------cCccccccccCCcEEec-ccccCCCccCccCCCCCCCcEEECCCCcCCCC
Q 037427          415 HLAMGCFNLEYLVLSENSLHG---------QLFSKKNYLRKLARLHL-DANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN  484 (829)
Q Consensus       415 ~~~~~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  484 (829)
                          .++.|+.+++..+.+.+         ..+..+..+ .++.+++ ..|.+.+..|. +..+++|+.|++++|.+. .
T Consensus       227 ----~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~  299 (606)
T 3vq2_A          227 ----NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-Y  299 (606)
T ss_dssp             ----TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-C
T ss_pred             ----cccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-h
Confidence                23445555544333221         112222222 4667777 77888888887 899999999999999997 4


Q ss_pred             cccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCc--CCccccC
Q 037427          485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGP--LKYGTFF  562 (829)
Q Consensus       485 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~l~  562 (829)
                      +| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+.+ ....+++|++|++++|.+.+.  ++.. +.
T Consensus       300 l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~  373 (606)
T 3vq2_A          300 LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYS-DL  373 (606)
T ss_dssp             CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHH-HH
T ss_pred             hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhh-hc
Confidence            56 889999999999999999 5777 45 9999999999999766554 344889999999999999765  3555 88


Q ss_pred             CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC-cccCCCCCCCEEECcCCcCccCCCCCccCCCccCC
Q 037427          563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN  641 (829)
Q Consensus       563 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  641 (829)
                      .+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..+.    
T Consensus       374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----  448 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT----  448 (606)
T ss_dssp             CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT----
T ss_pred             cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC----
Confidence            99999999999999885 56889999999999999999998877 6899999999999999999988888776654    


Q ss_pred             CCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC-CCCcccccCCCCCEEE
Q 037427          642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRALN  720 (829)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~  720 (829)
                                                                       +|++|++++|++++ .+|..++.+++|++|+
T Consensus       449 -------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          449 -------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             -------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             -------------------------------------------------CCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence                                                             89999999999998 4799999999999999


Q ss_pred             CCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCCCCcCCCCCCccccc
Q 037427          721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRID  800 (829)
Q Consensus       721 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  800 (829)
                      |++|++++.+|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++. +|..  +.  ..+          
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~--~~--~l~----------  544 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI--LQ--HFP----------  544 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC--GG--GSC----------
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh--Hh--hhc----------
Confidence            99999999999999999999999999999999999999999999999999999994 5543  10  000          


Q ss_pred             cccCCCCCCcccchhhhcCCccccccccC
Q 037427          801 CSTMYNGEGHCKYVTAIYAPHTCICKYKC  829 (829)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~p~~C~c~~~~  829 (829)
                              .....++..+|||.|+|+..|
T Consensus       545 --------~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          545 --------KSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             --------TTCCEEECCSCCCCCSSTTHH
T ss_pred             --------ccCcEEEccCCCcccCCccHH
Confidence                    012347888889999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-52  Score=506.38  Aligned_cols=541  Identities=22%  Similarity=0.167  Sum_probs=343.3

Q ss_pred             EEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEE
Q 037427          102 TLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDL  181 (829)
Q Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L  181 (829)
                      ..|.++++++.+..        -.++|++|||++|.+++..|..|.++++|++|+|++|...+.++ +..|+++++|++|
T Consensus         8 ~~dcs~~~L~~vP~--------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L   78 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ--------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEESCCCSSCCCS--------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEE
T ss_pred             EEEccCCCCCCCCC--------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEE
Confidence            45555555554321        13455666666666655555556666666666666554443331 1345555555555


Q ss_pred             ecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCC
Q 037427          182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI  261 (829)
Q Consensus       182 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~  261 (829)
                      +|++|.+++..|..|+                           ++++|++|++++|.+++.+|.           ...+.
T Consensus        79 ~Ls~N~l~~~~p~~~~---------------------------~l~~L~~L~Ls~n~l~~~~~~-----------~~~~~  120 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQ---------------------------GLFHLFELRLYFCGLSDAVLK-----------DGYFR  120 (844)
T ss_dssp             ECTTCCCCEECTTSSC---------------------------SCSSCCCEECTTCCCSSCCST-----------TCCCS
T ss_pred             ECCCCcCcccCHhHcc---------------------------CCcccCEeeCcCCCCCccccc-----------Ccccc
Confidence            5555555444444444                           444555555555544443320           11124


Q ss_pred             CCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCC--C
Q 037427          262 HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQ--H  339 (829)
Q Consensus       262 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~--~  339 (829)
                      ++++|++|+|++|.+.+..+...++++++|+.|++++|                          .+.+..+..+..+  +
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N--------------------------~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--------------------------QIFLVCEHELEPLQGK  174 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS--------------------------CCCCCCSGGGHHHHHC
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC--------------------------cCCeeCHHHcccccCC
Confidence            55555555555555543333233444444444333333                          3334444555555  7


Q ss_pred             CcCEEEcCCCCCCCCCchHHhhcCCC------CCEEEccCCcCcCCCCCCCCC---CCCCCEEEccCCcccccCchhhhh
Q 037427          340 DLELVDFSDSNLKGEFPNWLLKNNPN------LSTLVLRNNSLSGPFQTPIQP---HWHLDALHVSKNFFQGNIPLEIGV  410 (829)
Q Consensus       340 ~L~~L~Ls~n~l~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~ls~n~l~~~ip~~~~~  410 (829)
                      +|+.|++++|.+.+..|.. ++.+++      |++|++++|.+++..+..+..   ..+++.+.++.+.........-..
T Consensus       175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            8999999999998777654 334443      889999988888766655543   356778887744332111000000


Q ss_pred             ccccccccC--CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccc
Q 037427          411 YFPSHLAMG--CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR  488 (829)
Q Consensus       411 ~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  488 (829)
                      ......+.+  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|.++++|++|++++|.+++..|..
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence            011111222  257888888888888777778888888888888888888777778888888888888888888777888


Q ss_pred             cCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCcc
Q 037427          489 LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV  568 (829)
Q Consensus       489 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  568 (829)
                      +..+++|++|++++|++.+..+..|..+++|++|++++|.+++. +   .+++|+.|++++|++. .+|..    ..+++
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~---~~~~L~~L~l~~N~l~-~l~~~----~~~l~  404 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H---FIPSIPDIFLSGNKLV-TLPKI----NLTAN  404 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S---SCCSCSEEEEESCCCC-CCCCC----CTTCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c---CCCCcchhccCCCCcc-ccccc----ccccc
Confidence            88888888888888888877777788888888888888887732 2   2677888888888885 44432    45678


Q ss_pred             EEEccCCcCCCcc-hhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          569 TLDLSYNSFSGNI-PYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       569 ~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      .|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-.         
T Consensus       405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~---------  475 (844)
T 3j0a_A          405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV---------  475 (844)
T ss_dssp             EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC---------
T ss_pred             eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh---------
Confidence            8888888887642 33456778888888888888754433 355677888888888887643321110000         


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                             ...+++|+.|+|++|++++.+|..|..+++|+.|+|++|++
T Consensus       476 ---------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          476 ---------------------------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             ---------------------------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred             ---------------------------------------hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence                                                   01234677788888888877777778888888888888888


Q ss_pred             CCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeec
Q 037427          727 TGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE  778 (829)
Q Consensus       727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  778 (829)
                      ++..|..+.  ++|+.|||++|++++.+|..+.   +|+.+++++|++.+..
T Consensus       517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICEC  563 (844)
T ss_dssp             SSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSS
T ss_pred             CccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccc
Confidence            877666665  7788888888888877776653   6777888888776543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-52  Score=499.95  Aligned_cols=517  Identities=21%  Similarity=0.225  Sum_probs=420.0

Q ss_pred             CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccc-hhhhcCCCCCCEEEcCCCcCCccCCccccccCC
Q 037427           97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSI-FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNF  175 (829)
Q Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l  175 (829)
                      .++|++|||++|.+++..+..    |.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|  ..|+++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~----~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--~~~~~l   96 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGL   96 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSS----CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT--TSSCSC
T ss_pred             CCCcCEEECCCCcCCccChhH----CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH--hHccCC
Confidence            479999999999999887765    899999999999999766555 8889999999999999999998777  899999


Q ss_pred             CCCCEEecCCCCCCchhhHh--hhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccc
Q 037427          176 TNLEDLTLDYSSLHISILKS--IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLT  252 (829)
Q Consensus       176 ~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~  252 (829)
                      ++|++|+|++|.+++..|..  ++++++|++|++++|.+.+..+.  ..++++++|++|++++|.+++..| .+      
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l------  168 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHEL------  168 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGG------
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHc------
Confidence            99999999999999866665  88999999999999998876543  157788888888888888775544 22      


Q ss_pred             cccCCCCCCCC--CCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCC
Q 037427          253 GNISSSPLIHL--TSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHAT  330 (829)
Q Consensus       253 g~i~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~  330 (829)
                              ..+  ++|+.|++++|.+.+..+.. +                                           +.
T Consensus       169 --------~~l~~~~L~~L~L~~n~l~~~~~~~-~-------------------------------------------~~  196 (844)
T 3j0a_A          169 --------EPLQGKTLSFFSLAANSLYSRVSVD-W-------------------------------------------GK  196 (844)
T ss_dssp             --------HHHHHCSSCCCEECCSBSCCCCCCC-C-------------------------------------------CS
T ss_pred             --------ccccCCccceEECCCCccccccccc-h-------------------------------------------hh
Confidence                    333  56666666666655432211 0                                           00


Q ss_pred             cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcC--CCCCEEEccCCc---------CcCCCCCCCCCC--CCCCEEEccC
Q 037427          331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN--PNLSTLVLRNNS---------LSGPFQTPIQPH--WHLDALHVSK  397 (829)
Q Consensus       331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~---------l~~~~~~~~~~l--~~L~~L~ls~  397 (829)
                      .+..+.. ..|+.|++++|.+.+.+|..+...+  +.++.|.++.+.         +.+.....+..+  ++|+.|++++
T Consensus       197 ~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          197 CMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             SSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred             cCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence            1111222 2599999999999988887754332  578889887443         333333444443  7899999999


Q ss_pred             CcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECC
Q 037427          398 NFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMS  477 (829)
Q Consensus       398 n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  477 (829)
                      |.+.+..|..+         ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus       276 n~l~~~~~~~~---------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          276 GFVFSLNSRVF---------ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCCEECSCCS---------SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CcccccChhhh---------hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            99986544433         356899999999999999999999999999999999999998889999999999999999


Q ss_pred             CCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCC
Q 037427          478 DNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLK  557 (829)
Q Consensus       478 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  557 (829)
                      +|.+.+..+..+..+++|++|++++|.+++.     ..+++|+.|++++|+++ .+|..  ..+++.|++++|++.+.-.
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSSTT
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc--ccccceeecccCccccCch
Confidence            9999988888899999999999999999853     33889999999999998 44543  5679999999999976433


Q ss_pred             ccccCCCCCccEEEccCCcCCCcchh-hhhcCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427          558 YGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLIRLRYLILANNNLE-----GEVPNQLCGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       558 ~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                      ...+..+++|++|++++|++++..+. .+..+++|++|++++|.++     +..+..+.++++|+.|+|++|++++..|.
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  498 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG  498 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence            33356899999999999999875543 3556899999999999997     44556788999999999999999988887


Q ss_pred             CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427          632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG  711 (829)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~  711 (829)
                      .+..+.                                                     +|+.|+|++|++++..|..+.
T Consensus       499 ~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          499 VFSHLT-----------------------------------------------------ALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             SSSSCC-----------------------------------------------------SCSEEEEESCCCSSCCCCCCC
T ss_pred             Hccchh-----------------------------------------------------hhheeECCCCCCCccChhhhh
Confidence            776655                                                     899999999999987777776


Q ss_pred             cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427          712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                        ++|+.|+|++|++++.+|..|.   +|+.|++++|++.+..+
T Consensus       526 --~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          526 --ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             --SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             --ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence              8999999999999999998764   78999999999987554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.2e-53  Score=490.33  Aligned_cols=518  Identities=17%  Similarity=0.205  Sum_probs=293.6

Q ss_pred             CChHHHHHHHHHhhhcCCCCC--------CCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCcccccccccc
Q 037427           20 GCLEQERSALLRLKHDFFNDP--------FNLENWVDDENHSDCCKW---EGVECNTSTGRVKALYLSSKRQFLYSTAGQ   88 (829)
Q Consensus        20 ~~~~~~~~~ll~~k~~~~~~~--------~~l~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~   88 (829)
                      +...+|+.||.++|+++.++.        ...++|.   .+++||.|   +||+|+. .|||++|+|+++++.   |.  
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~---g~--   96 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS---GR--   96 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE---EE--
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCcccC---Cc--
Confidence            344579999999999986321        1345786   46799999   9999986 489999999988752   22  


Q ss_pred             cCcccccCCCCCcEEeCCCCCCCCcCCCcc-------ccccCCCCCCCEEECCCCCCCccchhhhcC-CCCCCEEEcCCC
Q 037427           89 LNASLLTPFQQLETLHLDSNNIAGFVENGG-------LERLSGLSKLKLLNLGRNLFNNSIFSSLAG-LSSLRTLSLGYN  160 (829)
Q Consensus        89 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-L~~L~~L~Ls~n  160 (829)
                      ++ ..+..+++|++|+|++|.+.......+       +. -..+++|| ++++.|.+.+.+|..+.. +..+.++++...
T Consensus        97 lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~-~~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~  173 (636)
T 4eco_A           97 VP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS-DEQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK  173 (636)
T ss_dssp             EC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC-HHHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred             CC-hHHhcCccceEEECcCCccccCCccccccccccCch-HHHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence            22 456777777777777776521110000       00 00023334 444444444444433331 112222222221


Q ss_pred             cCCccCCccccccCCCCCCEEecC--CCCCCchhhHhhhcCCCCCEEEcccccCccc-----------------cCCCcc
Q 037427          161 RLKGSIDVKETLDNFTNLEDLTLD--YSSLHISILKSIAAFTSLKRLSIQNGRVDGA-----------------LGDDEE  221 (829)
Q Consensus       161 ~i~~~~p~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~  221 (829)
                      .+.        ......++.+.+.  .|.+++ +|..++++++|++|++++|.+++.                 +|.   
T Consensus       174 ~~~--------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~---  241 (636)
T 4eco_A          174 SIK--------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE---  241 (636)
T ss_dssp             CCC--------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS---
T ss_pred             ccc--------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch---
Confidence            111        0111122222222  355555 566666666666666666666653                 444   


Q ss_pred             ccC--CCCCCcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEccccc-Ccc-ccCchhhcCCCCCceeec
Q 037427          222 GLC--RLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQ-FQI-PFSLEPFFNLSKLKVFSG  296 (829)
Q Consensus       222 ~l~--~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~-~~~-~~~~~~l~~l~~L~~L~l  296 (829)
                      .++  ++++|++|++++|.+.|.+| .+              +++++|++|++++|+ +++ .+|.. ++++.       
T Consensus       242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l--------------~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~-------  299 (636)
T 4eco_A          242 DLKWDNLKDLTDVEVYNCPNLTKLPTFL--------------KALPEMQLINVACNRGISGEQLKDD-WQALA-------  299 (636)
T ss_dssp             CCCGGGCTTCCEEEEECCTTCSSCCTTT--------------TTCSSCCEEECTTCTTSCHHHHHHH-HHHHH-------
T ss_pred             hhhhcccCCCCEEEecCCcCCccChHHH--------------hcCCCCCEEECcCCCCCccccchHH-HHhhh-------
Confidence            344  44445555555444444443 22              444444444444443 333 22211 11100       


Q ss_pred             cccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCch--HHhhcCCCCCEEEccCC
Q 037427          297 EFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPN--WLLKNNPNLSTLVLRNN  374 (829)
Q Consensus       297 ~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~~~l~~L~~L~L~~n  374 (829)
                                                           .+..+++|++|++++|+++ .+|.  . ++++++|++|++++|
T Consensus       300 -------------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          300 -------------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYN  340 (636)
T ss_dssp             -------------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSC
T ss_pred             -------------------------------------ccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCC
Confidence                                                 0011134444555555544 4444  2 344444444444444


Q ss_pred             cCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccC-CcEEecc
Q 037427          375 SLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK-LARLHLD  453 (829)
Q Consensus       375 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~  453 (829)
                                              .++|.+| .+.         .+++|++|++++|.++ .+|..+..+++ |++|+++
T Consensus       341 ------------------------~l~g~ip-~~~---------~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          341 ------------------------QLEGKLP-AFG---------SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             ------------------------CCEEECC-CCE---------EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred             ------------------------cCccchh-hhC---------CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence                                    4444443 221         1345666666666665 45556666777 7777777


Q ss_pred             cccCCCccCccCCCCC--CCcEEECCCCcCCCCcccccC-------CCCCCCEEEccCCcccCCChhhhhCCCCCCEEeC
Q 037427          454 ANYFTGEIPKSLSNCS--RLEGLYMSDNNLYGNIPARLG-------NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL  524 (829)
Q Consensus       454 ~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  524 (829)
                      +|.++ .+|..+..++  +|++|++++|++.+.+|..+.       .+++|++|++++|+++...+..+..+++|++|++
T Consensus       386 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL  464 (636)
T ss_dssp             SSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred             CCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence            77777 6676666544  788888888888877777776       6677888888888887544455566788888888


Q ss_pred             CCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh--cCCCCCEEEccCCccc
Q 037427          525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE--RLIRLRYLILANNNLE  602 (829)
Q Consensus       525 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~  602 (829)
                      ++|+++ .+|.....              + ... .+.++++|++|++++|+++ .+|..+.  .+++|++|+|++|+++
T Consensus       465 s~N~l~-~i~~~~~~--------------~-~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          465 MGNMLT-EIPKNSLK--------------D-ENE-NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             CSSCCS-BCCSSSSE--------------E-TTE-ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCC-CcCHHHhc--------------c-ccc-cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC
Confidence            888777 44432100              0 000 0233447777777777777 5555554  6777777777777777


Q ss_pred             ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccccee
Q 037427          603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISF  682 (829)
Q Consensus       603 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (829)
                      + +|..+..+++|++|++++|+.                                                         
T Consensus       527 ~-ip~~~~~l~~L~~L~Ls~N~~---------------------------------------------------------  548 (636)
T 4eco_A          527 K-FPTQPLNSSTLKGFGIRNQRD---------------------------------------------------------  548 (636)
T ss_dssp             S-CCCGGGGCSSCCEEECCSCBC---------------------------------------------------------
T ss_pred             C-cChhhhcCCCCCEEECCCCcc---------------------------------------------------------
Confidence            5 666677777777777766541                                                         


Q ss_pred             eecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427          683 SYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN  751 (829)
Q Consensus       683 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  751 (829)
                                    +++|++.+.+|..++.+++|++|+|++|++ +.+|..+.  ++|+.|||++|++.
T Consensus       549 --------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          549 --------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             --------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             --------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence                          355666667777777777777777777777 46666655  67777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.1e-50  Score=471.91  Aligned_cols=540  Identities=15%  Similarity=0.168  Sum_probs=309.6

Q ss_pred             CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCcEEEEEcCCCcccc
Q 037427           19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDE--NHSDC--CKW------------EGVECNTSTGRVKALYLSSKRQFL   82 (829)
Q Consensus        19 ~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~   82 (829)
                      .++..+|+.||++||+++.++     +|..+.  ...+|  |.|            .||+|+. .+||++|+|+++++. 
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~-  336 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK-  336 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE-
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC-
Confidence            456678999999999999643     896321  01244  999            9999986 689999999988652 


Q ss_pred             cccccccCcccccCCCCCcEEeC-CCCCCCCcCCCccccccCCCCCCCEEECCC--------------------CCCCcc
Q 037427           83 YSTAGQLNASLLTPFQQLETLHL-DSNNIAGFVENGGLERLSGLSKLKLLNLGR--------------------NLFNNS  141 (829)
Q Consensus        83 ~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~--------------------n~l~~~  141 (829)
                        |.  + +..+..+++|++||| ++|.+.|..+      +.....  .++++.                    ..+.+.
T Consensus       337 --G~--i-p~~l~~L~~L~~LdLss~N~lsG~~~------~~~~~~--~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          337 --GR--V-PDAIGQLTELKVLSFGTHSETVSGRL------FGDEEL--TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             --EE--E-CGGGGGCTTCCEEESCCTTHHHHTTC------BTTBCC--CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             --Cc--C-chHHhccccceEeeeccccccccccc------cccccc--ccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence              21  2 234556666666666 5555555432      111100  000000                    000000


Q ss_pred             chhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCC--CCCCchhhHhhhcCCCCCEEEcccccCccc-cCC
Q 037427          142 IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDY--SSLHISILKSIAAFTSLKRLSIQNGRVDGA-LGD  218 (829)
Q Consensus       142 ~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~  218 (829)
                      .+..+...+.             ..+  ........++.+.+..  |.+++ +|..++++++|++|+|++|.+++. +|.
T Consensus       404 ~~~~l~~~~~-------------~~~--i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~  467 (876)
T 4ecn_A          404 LQDAINRNPE-------------MKP--IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV  467 (876)
T ss_dssp             HHHHHHTCTT-------------SCC--CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred             HHHHhhhCcc-------------ccc--cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence            1111110000             000  0111222333333433  56666 666677777777777777777662 111


Q ss_pred             CccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCC--CCCCCCEEEcccccCccccCchhhcCCCCCceeec
Q 037427          219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI--HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSG  296 (829)
Q Consensus       219 ~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l  296 (829)
                         .+.        ..+.|.+.|.+|             ..++  ++++|++|+|++|.+.+.+| ..+.++++|+.|++
T Consensus       468 ---~~~--------~~s~n~~~g~iP-------------~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          468 ---DWE--------DANSDYAKQYEN-------------EELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI  522 (876)
T ss_dssp             ---SCS--------CTTSHHHHHHTT-------------SCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred             ---ccc--------ccccccccccCC-------------hhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence               000        001122222233             1113  45555555555554443333 12222222222222


Q ss_pred             cccceeeccCCCCCCCCCcCccEEEccCCCCCC-CcChhhh-------CCCCcCEEEcCCCCCCCCCch--HHhhcCCCC
Q 037427          297 EFNEIYVEPESSHSTTPKFQLESVSLSGSDIHA-TFPKFLY-------NQHDLELVDFSDSNLKGEFPN--WLLKNNPNL  366 (829)
Q Consensus       297 ~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~-~~p~~l~-------~~~~L~~L~Ls~n~l~~~~p~--~~~~~l~~L  366 (829)
                      ++|.+                         +++ .+|..+.       .+++|+.|++++|.+. .+|.  . ++++++|
T Consensus       523 s~N~~-------------------------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L  575 (876)
T 4ecn_A          523 ACNRG-------------------------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKL  575 (876)
T ss_dssp             TTCTT-------------------------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTC
T ss_pred             cCCCC-------------------------cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCC
Confidence            21110                         111 1222222       2335555666666555 5555  3 4555555


Q ss_pred             CEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccC
Q 037427          367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK  446 (829)
Q Consensus       367 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  446 (829)
                      ++|++++|.++ .+| .+..+                                 ++|++|++++|.++ .+|..+..+++
T Consensus       576 ~~L~Ls~N~l~-~lp-~~~~L---------------------------------~~L~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          576 GLLDCVHNKVR-HLE-AFGTN---------------------------------VKLTDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             CEEECTTSCCC-BCC-CCCTT---------------------------------SEESEEECCSSCCS-CCCTTSCEECT
T ss_pred             CEEECCCCCcc-cch-hhcCC---------------------------------CcceEEECcCCccc-cchHHHhhccc
Confidence            55555555555 233 33333                                 34555555555554 44445555666


Q ss_pred             -CcEEecccccCCCccCccCCCCCC--CcEEECCCCcCCCCcccc---cC--CCCCCCEEEccCCcccCCChhhhhCCCC
Q 037427          447 -LARLHLDANYFTGEIPKSLSNCSR--LEGLYMSDNNLYGNIPAR---LG--NLSSLNDIMMASNHLQGPIPLEFCQLNY  518 (829)
Q Consensus       447 -L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~  518 (829)
                       |+.|++++|.++ .+|..+..++.  |+.|++++|++.+.+|..   +.  .+++|+.|++++|+++...+..+..+++
T Consensus       620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~  698 (876)
T 4ecn_A          620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP  698 (876)
T ss_dssp             TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred             cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence             777777777766 55665655543  777777777777655432   22  3347888888888888444444457888


Q ss_pred             CCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh--cCCCCCEEEc
Q 037427          519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE--RLIRLRYLIL  596 (829)
Q Consensus       519 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L  596 (829)
                      |+.|++++|+++ .+|.....              +..+  .+.++++|+.|+|++|+++ .+|..+.  .+++|+.|+|
T Consensus       699 L~~L~Ls~N~L~-~ip~~~~~--------------~~~~--~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L  760 (876)
T 4ecn_A          699 ISTIILSNNLMT-SIPENSLK--------------PKDG--NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV  760 (876)
T ss_dssp             CSEEECCSCCCS-CCCTTSSS--------------CTTS--CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCC-ccChHHhc--------------cccc--cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence            888888888887 44433200              0000  1344568888888888888 6677776  7888999999


Q ss_pred             cCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeee
Q 037427          597 ANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT  676 (829)
Q Consensus       597 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (829)
                      ++|++++ +|..+..+++|+.|+|++|+                                                    
T Consensus       761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------------------------------------  787 (876)
T 4ecn_A          761 SYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------------------------------------  787 (876)
T ss_dssp             CSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------------------------------------
T ss_pred             CCCCCCc-cchhhhcCCCCCEEECCCCC----------------------------------------------------
Confidence            9998886 78888888888888888775                                                    


Q ss_pred             cccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCc
Q 037427          677 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP  756 (829)
Q Consensus       677 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~  756 (829)
                                         ++++|++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...-+.
T Consensus       788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred             -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence                               2456777778888888888888888888888 57777765  5888888888888766666


Q ss_pred             ccccCCCCcEEeccCCccee
Q 037427          757 QLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       757 ~l~~l~~L~~L~ls~N~l~g  776 (829)
                      .+.....+..+.+.+|++..
T Consensus       846 ~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          846 SVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             GGHHHHHTTCCEEECCTTSE
T ss_pred             HccccccchheeecCCCccc
Confidence            66666666777777776553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-48  Score=448.72  Aligned_cols=506  Identities=19%  Similarity=0.195  Sum_probs=296.9

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN  177 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~  177 (829)
                      +++++|++++|.+++..+.+    |.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|  ..|+++++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSS  101 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTT----TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTT
T ss_pred             ccccEEEccCCccCccChhH----hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH--hhhcCccc
Confidence            34566666666655544432    5555666666666665555555555555666666666555554433  44555555


Q ss_pred             CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCcc-ccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccC
Q 037427          178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDG-ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS  256 (829)
Q Consensus       178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~  256 (829)
                      |++|++++|.+++..+..++++++|++|++++|.+.+ .+|.   .++++                              
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l------------------------------  148 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNL------------------------------  148 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG---GGGGC------------------------------
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChh---hhccc------------------------------
Confidence            5555555555554433344555555555555554443 1233   34444                              


Q ss_pred             CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427          257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY  336 (829)
Q Consensus       257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~  336 (829)
                             ++|++|++++|.+++. +...+..+++|+.                      ..+++++++|.+.+..|..+.
T Consensus       149 -------~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~----------------------~~~~L~l~~n~l~~~~~~~~~  198 (570)
T 2z63_A          149 -------TNLEHLDLSSNKIQSI-YCTDLRVLHQMPL----------------------LNLSLDLSLNPMNFIQPGAFK  198 (570)
T ss_dssp             -------TTCCEEECTTSCCCEE-CGGGGHHHHTCTT----------------------CCCEEECTTCCCCEECTTTTT
T ss_pred             -------CCCCEEeCcCCcccee-cHHHccchhccch----------------------hhhhcccCCCCceecCHHHhc
Confidence                   4444444444444321 1222333333310                      002233333333333333333


Q ss_pred             CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427          337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL  416 (829)
Q Consensus       337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~  416 (829)
                      .. +|+.|++++|..........++.++.++.+.+....+...        ..++  .+....+.+         +..  
T Consensus       199 ~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~--~~~~~~~~~---------l~~--  256 (570)
T 2z63_A          199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLE--KFDKSALEG---------LCN--  256 (570)
T ss_dssp             TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCE--ECCTTTTGG---------GGG--
T ss_pred             cC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhh--hcchhhhcc---------ccc--
Confidence            33 4566666655433222222255666666655543322210        0111  111111110         110  


Q ss_pred             ccCCCcccEEEcccc-cccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCC
Q 037427          417 AMGCFNLEYLVLSEN-SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL  495 (829)
Q Consensus       417 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  495 (829)
                          ..++.++++++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|
T Consensus       257 ----l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L  327 (570)
T 2z63_A          257 ----LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSL  327 (570)
T ss_dssp             ----SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSC
T ss_pred             ----cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccccc
Confidence                13556666665 555555666666666666666666666 455555555 6666666666665 3333  345555


Q ss_pred             CEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCC
Q 037427          496 NDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN  575 (829)
Q Consensus       496 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n  575 (829)
                      ++|++++|.+.+..+.  ..+++|++|++++|.+++..                     ..+.. +..+++|++|++++|
T Consensus       328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~---------------------~~~~~-~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG---------------------CCSQS-DFGTTSLKYLDLSFN  383 (570)
T ss_dssp             CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE---------------------EEEHH-HHTCSCCCEEECCSC
T ss_pred             CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc---------------------ccccc-ccccCccCEEECCCC
Confidence            6666665555544332  34455555555555443211                     01222 667778888888888


Q ss_pred             cCCCcchhhhhcCCCCCEEEccCCcccccCC-cccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCC
Q 037427          576 SFSGNIPYWIERLIRLRYLILANNNLEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNP  654 (829)
Q Consensus       576 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  654 (829)
                      ++.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+.                 
T Consensus       384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------------  445 (570)
T 2z63_A          384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-----------------  445 (570)
T ss_dssp             SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-----------------
T ss_pred             cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-----------------
Confidence            87765544 7788888888888888876655 4677888888888888888877776665544                 


Q ss_pred             CCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCC-CCCCcccccCCCCCEEECCCCCCCCCcccc
Q 037427          655 NRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-GEIPPQIGKLTNIRALNFSHNNLTGVIPVS  733 (829)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~  733 (829)
                                                          +|++|++++|+++ +.+|..+..+++|++|++++|++++..|..
T Consensus       446 ------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  489 (570)
T 2z63_A          446 ------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  489 (570)
T ss_dssp             ------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ------------------------------------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence                                                7888888888887 578888888999999999999999888888


Q ss_pred             ccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          734 FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       734 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      |..+++|+.|++++|++++..|..+..+++|++|++++|+++|..|..
T Consensus       490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            888999999999999998888888888899999999999998887753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.2e-47  Score=438.58  Aligned_cols=478  Identities=18%  Similarity=0.162  Sum_probs=320.7

Q ss_pred             CCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEE
Q 037427          126 SKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRL  205 (829)
Q Consensus       126 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  205 (829)
                      ++|++|++++|.+++..|..|+++++|++|+|++|.+++..|  ..|+++++|++|+|++|.+++..+..++++++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--hhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            567777777777776666777777777777777777776555  567777777777777777777766677777777777


Q ss_pred             EcccccCccc-cCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchh
Q 037427          206 SIQNGRVDGA-LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP  284 (829)
Q Consensus       206 ~L~~n~l~~~-~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~  284 (829)
                      ++++|.+.+. .|.   .++++++|++|++++|.+.+.+|            +..+..+++|++|++++|.++       
T Consensus       104 ~Ls~n~l~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~------------~~~~~~l~~L~~L~L~~n~l~-------  161 (549)
T 2z81_A          104 NLMGNPYQTLGVTS---LFPNLTNLQTLRIGNVETFSEIR------------RIDFAGLTSLNELEIKALSLR-------  161 (549)
T ss_dssp             ECTTCCCSSSCSSC---SCTTCTTCCEEEEEESSSCCEEC------------TTTTTTCCEEEEEEEEETTCC-------
T ss_pred             ECCCCcccccchhh---hhhccCCccEEECCCCccccccC------------HhhhhcccccCeeeccCCccc-------
Confidence            7777777642 333   46666666666666665443333            222344555555555555444       


Q ss_pred             hcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCC
Q 037427          285 FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP  364 (829)
Q Consensus       285 l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~  364 (829)
                                                                  +..|..+..+++|+.|+++.|.+. .+|.++++.++
T Consensus       162 --------------------------------------------~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~  196 (549)
T 2z81_A          162 --------------------------------------------NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILS  196 (549)
T ss_dssp             --------------------------------------------EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTT
T ss_pred             --------------------------------------------ccChhhhhccccCceEecccCccc-ccchhhHhhcc
Confidence                                                        333444555666667777776665 56666566778


Q ss_pred             CCCEEEccCCcCcCCC--C-CCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccc
Q 037427          365 NLSTLVLRNNSLSGPF--Q-TPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK  441 (829)
Q Consensus       365 ~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  441 (829)
                      +|++|++++|.+++..  + .....+++|+.|++++|.+++..+..+...+.     .+++|+.+++++|.+.+...-  
T Consensus       197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-----~~~~L~~l~l~~~~~~~~~~~--  269 (549)
T 2z81_A          197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR-----YILELSEVEFDDCTLNGLGDF--  269 (549)
T ss_dssp             TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG-----GCTTCCEEEEESCEEECCSCC--
T ss_pred             cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh-----hhccccccccccccccccccc--
Confidence            8888888888777642  1 11234567777777777777655554443211     234566666666655432100  


Q ss_pred             ccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCC-----cccccCCCCCCCEEEccCCcccCCChhhh-hC
Q 037427          442 NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN-----IPARLGNLSSLNDIMMASNHLQGPIPLEF-CQ  515 (829)
Q Consensus       442 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~  515 (829)
                         +             ......+..+++|+.|++.++.+...     ++..+...++|++|++++|++. .+|..+ ..
T Consensus       270 ---~-------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~  332 (549)
T 2z81_A          270 ---N-------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH  332 (549)
T ss_dssp             ---C-------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHH
T ss_pred             ---c-------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhc
Confidence               0             00112234556667777766655421     1111223456777777777765 344443 46


Q ss_pred             CCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcch--hhhhcCCCCCE
Q 037427          516 LNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP--YWIERLIRLRY  593 (829)
Q Consensus       516 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~  593 (829)
                      +++|++|++++|++++.+|..                     ...+..+++|++|++++|++++..+  ..+..+++|++
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~  391 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS  391 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred             CccccEEEccCCccccccccc---------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence            777777777777666433210                     1115667888888888888886543  56888999999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccce
Q 037427          594 LILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESI  673 (829)
Q Consensus       594 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (829)
                      |++++|+++ .+|..+..+++|++|++++|++++ +|..+                                        
T Consensus       392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------------------------  429 (549)
T 2z81_A          392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI----------------------------------------  429 (549)
T ss_dssp             EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------------------------
T ss_pred             EECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh----------------------------------------
Confidence            999999998 678888889999999999999863 23211                                        


Q ss_pred             eeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCccc
Q 037427          674 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK  753 (829)
Q Consensus       674 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~  753 (829)
                                     .++|++||+++|++++.+    ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.
T Consensus       430 ---------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          430 ---------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             ---------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred             ---------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence                           126889999999998653    57889999999999999 6676 56789999999999999998


Q ss_pred             CCcccccCCCCcEEeccCCcceeecCC
Q 037427          754 IPPQLVELNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       754 ip~~l~~l~~L~~L~ls~N~l~g~ip~  780 (829)
                      +|..+..+++|++|++++|+++|..|.
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          489 PDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CHHHHhcCcccCEEEecCCCccCCCcc
Confidence            888899999999999999999988773

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=436.60  Aligned_cols=493  Identities=18%  Similarity=0.160  Sum_probs=359.2

Q ss_pred             CCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh
Q 037427           67 TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL  146 (829)
Q Consensus        67 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  146 (829)
                      ..+++.|+|+++.+.      .+.+..|..+++|++|+|++|.+++..+..    |.++++|++|+|++|.+++..|..|
T Consensus        27 ~~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~   96 (570)
T 2z63_A           27 PFSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAF   96 (570)
T ss_dssp             CSSCCEEECCSCCCC------EECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             cccccEEEccCCccC------ccChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhh
Confidence            457999999998753      234557899999999999999999877654    8999999999999999998888999


Q ss_pred             cCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCccccCCCccccCC
Q 037427          147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCR  225 (829)
Q Consensus       147 ~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (829)
                      +++++|++|++++|.+++..+  ..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+.   .++.
T Consensus        97 ~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~  171 (570)
T 2z63_A           97 SGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRV  171 (570)
T ss_dssp             TTCTTCCEEECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHH
T ss_pred             cCccccccccccccccccCCC--ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---Hccc
Confidence            999999999999999985533  469999999999999999987 4689999999999999999999987666   5666


Q ss_pred             CCCC----cEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccce
Q 037427          226 LGHL----QELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI  301 (829)
Q Consensus       226 l~~L----~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i  301 (829)
                      +++|    ++|++++|.+++..|             ..+... +|+.|++++|..........+..++.++...+....+
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~-------------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQP-------------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECT-------------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             hhccchhhhhcccCCCCceecCH-------------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            6666    899999999986544             222433 7999999998654333334566777777666543322


Q ss_pred             ee------ccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCC-CCCCCCchHHhhcCCCCCEEEccCC
Q 037427          302 YV------EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDS-NLKGEFPNWLLKNNPNLSTLVLRNN  374 (829)
Q Consensus       302 ~~------~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n  374 (829)
                      ..      .............+                        +.++++++ .+.+.+|.. +..+++|++|++++|
T Consensus       238 ~~~~~l~~~~~~~~~~l~~l~l------------------------~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~  292 (570)
T 2z63_A          238 RNEGNLEKFDKSALEGLCNLTI------------------------EEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV  292 (570)
T ss_dssp             CCCSSCEECCTTTTGGGGGSEE------------------------EEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC
T ss_pred             cCchhhhhcchhhhccccccch------------------------hhhhhhcchhhhhhchhh-hcCcCcccEEEecCc
Confidence            11      11111111111233                        34444444 333333433 344555555555555


Q ss_pred             cCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEeccc
Q 037427          375 SLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA  454 (829)
Q Consensus       375 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  454 (829)
                      .+++ ++..+..+ +|++|++++|.+. .+|..           .+++|++|++++|.+.+..+.  ..+++|++|++++
T Consensus       293 ~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~-----------~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~  356 (570)
T 2z63_A          293 TIER-VKDFSYNF-GWQHLELVNCKFG-QFPTL-----------KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR  356 (570)
T ss_dssp             EECS-CCBCCSCC-CCSEEEEESCBCS-SCCBC-----------BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred             cchh-hhhhhccC-CccEEeeccCccc-ccCcc-----------cccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence            5543 33344444 5566666665554 33321           234666666666666554443  4567777777777


Q ss_pred             ccCCCcc--CccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCcc
Q 037427          455 NYFTGEI--PKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISG  531 (829)
Q Consensus       455 n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~  531 (829)
                      |.+++..  +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            7776443  4556677777777777777764433 37777777777777777776555 456777778888888887777


Q ss_pred             cCCCCC-CCCcccEEEccCCccc-CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCccc
Q 037427          532 SLPSCS-SHSTIQQVHLSKNMLY-GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQL  609 (829)
Q Consensus       532 ~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  609 (829)
                      ..|..+ .+++|++|++++|.+. +.+|.. +..+++|++|++++|++++..|.++..+++|++|++++|++++..+..+
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            666665 6778888888888876 456655 8899999999999999998889999999999999999999998888889


Q ss_pred             CCCCCCCEEECcCCcCccCCCC
Q 037427          610 CGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       610 ~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                      .++++|+.|++++|++++..|.
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999988775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.4e-46  Score=431.30  Aligned_cols=473  Identities=18%  Similarity=0.152  Sum_probs=361.1

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN  177 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~  177 (829)
                      ++|++|+|++|.+++..+.+    |.++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..|  ..++++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--SWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH--HHHTTCTT
T ss_pred             CCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH--HHhccCCC
Confidence            78999999999999887754    8999999999999999998888999999999999999999997655  66999999


Q ss_pred             CCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccC
Q 037427          178 LEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS  256 (829)
Q Consensus       178 L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~  256 (829)
                      |++|++++|.+++ ..|..++++++|++|++++|.+.+.+|..  .+.++++|++|++++|.+++.+|            
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~------------  165 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI--DFAGLTSLNELEIKALSLRNYQS------------  165 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETTCCEECT------------
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh--hhhcccccCeeeccCCcccccCh------------
Confidence            9999999999986 35678999999999999999855555531  68899999999999999997666            


Q ss_pred             CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427          257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY  336 (829)
Q Consensus       257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~  336 (829)
                       ..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+........                       ....
T Consensus       166 -~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~~~  220 (549)
T 2z81_A          166 -QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL-----------------------PVDE  220 (549)
T ss_dssp             -TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------------SSCC
T ss_pred             -hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccccc-----------------------chhh
Confidence             23388999999999999875 3343445668888888888877654321110                       0112


Q ss_pred             CCCCcCEEEcCCCCCCCCCchHH---hhcCCCCCEEEccCCcCcCCC------CCCCCCCCCCCEEEccCCcccccCchh
Q 037427          337 NQHDLELVDFSDSNLKGEFPNWL---LKNNPNLSTLVLRNNSLSGPF------QTPIQPHWHLDALHVSKNFFQGNIPLE  407 (829)
Q Consensus       337 ~~~~L~~L~Ls~n~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~ls~n~l~~~ip~~  407 (829)
                      .+++|+.|++++|.+.+..+..+   +..+++|+.+++++|.+.+..      ...+..+.+++.|++.++.+.....  
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--  298 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--  298 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--
Confidence            33455555555555544333221   234556666666666655421      1234556777788877776543110  


Q ss_pred             hhhccccccccCCCcccEEEcccccccccCcccc-ccccCCcEEecccccCCCccC---ccCCCCCCCcEEECCCCcCCC
Q 037427          408 IGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK-NYLRKLARLHLDANYFTGEIP---KSLSNCSRLEGLYMSDNNLYG  483 (829)
Q Consensus       408 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~  483 (829)
                      +.. ++ ..+....+|++|++++|.+.. +|..+ ..+++|++|++++|++++..|   ..++.+++|++|++++|++++
T Consensus       299 ~~~-l~-~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  375 (549)
T 2z81_A          299 FYD-LS-TVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS  375 (549)
T ss_dssp             SCC-CC-HHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred             ccc-ch-hhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence            000 00 001123578999999999874 45444 578999999999999987664   347788999999999999986


Q ss_pred             Ccc--cccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCcccc
Q 037427          484 NIP--ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTF  561 (829)
Q Consensus       484 ~~p--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l  561 (829)
                      ..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|... .++|++|++++|++++.+     
T Consensus       376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-~~~L~~L~Ls~N~l~~~~-----  447 (549)
T 2z81_A          376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-PQTLEVLDVSNNNLDSFS-----  447 (549)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-CTTCSEEECCSSCCSCCC-----
T ss_pred             cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-cCCceEEECCCCChhhhc-----
Confidence            432  45888999999999999998 577788889999999999999873 44333 368999999999997642     


Q ss_pred             CCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427          562 FNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP  630 (829)
Q Consensus       562 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  630 (829)
                      ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus       448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            46889999999999998 5665 4678999999999999998888889999999999999999987665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.9e-47  Score=439.92  Aligned_cols=365  Identities=20%  Similarity=0.248  Sum_probs=259.1

Q ss_pred             CCCCCCCcChhhhCCCCcCEEEcCCCCCCCC-----------------CchHHhh--cCCCCCEEEccCCcCcCCCCCCC
Q 037427          324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGE-----------------FPNWLLK--NNPNLSTLVLRNNSLSGPFQTPI  384 (829)
Q Consensus       324 ~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~~--~l~~L~~L~L~~n~l~~~~~~~~  384 (829)
                      .|++++ +|..+.++++|++|++++|.+++.                 +|.. ++  ++++|++|++++|.+.+.+|..+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHH
Confidence            355666 677777777777777777777764                 5655 34  66666666666666666666666


Q ss_pred             CCCCCCCEEEccCCc-ccc-cCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccC
Q 037427          385 QPHWHLDALHVSKNF-FQG-NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP  462 (829)
Q Consensus       385 ~~l~~L~~L~ls~n~-l~~-~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  462 (829)
                      ..+++|++|++++|+ ++| .+|..++...                           .+..+++|++|++++|+++ .+|
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~---------------------------~~~~l~~L~~L~L~~n~l~-~ip  321 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALA---------------------------DAPVGEKIQIIYIGYNNLK-TFP  321 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------------------HSGGGGTCCEEECCSSCCS-SCC
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhh---------------------------ccccCCCCCEEECCCCcCC-ccC
Confidence            666666666666665 665 5555544310                           0011255566666666655 455


Q ss_pred             c--cCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCC-CCEEeCCCCcCcccCCCCC-C
Q 037427          463 K--SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY-LEILDLSENNISGSLPSCS-S  538 (829)
Q Consensus       463 ~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~-~  538 (829)
                      .  .++++++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+ .
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~  398 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA  398 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence            5  55666666666666666665555 5556666666666666666 55555666666 666666666666 455544 2


Q ss_pred             --CCcccEEEccCCcccCcCCccccC-------CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcc-
Q 037427          539 --HSTIQQVHLSKNMLYGPLKYGTFF-------NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ-  608 (829)
Q Consensus       539 --~~~L~~L~L~~n~l~~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-  608 (829)
                        +++|++|++++|.+.+.+|.. +.       .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.. 
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~  476 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS  476 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred             cccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHH
Confidence              235677777777776666554 55       6779999999999999655556677899999999999998 55544 


Q ss_pred             cCCC-------CCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccce
Q 037427          609 LCGL-------KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEIS  681 (829)
Q Consensus       609 l~~l-------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (829)
                      +...       ++|++|++++|+++ .+|..+..                                              
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------------------  509 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------------------  509 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------------------
T ss_pred             hccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------------------
Confidence            3323       39999999999998 67765540                                              


Q ss_pred             eeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEEC------CCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427          682 FSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNF------SHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       682 ~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                           ..+++|+.|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..++++++|+.|||++|++ +.+|
T Consensus       510 -----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          510 -----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             -----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             -----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence                 013389999999999997 8999999999999999      56889999999999999999999999999 6889


Q ss_pred             cccccCCCCcEEeccCCcceeecC
Q 037427          756 PQLVELNALVVFSVAHNNLSAAER  779 (829)
Q Consensus       756 ~~l~~l~~L~~L~ls~N~l~g~ip  779 (829)
                      ..+.  ++|++|++++|++...-+
T Consensus       583 ~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          583 EKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             SCCC--TTCCEEECCSCTTCEEEC
T ss_pred             HhHh--CcCCEEECcCCCCccccH
Confidence            8876  799999999999886544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-43  Score=417.21  Aligned_cols=518  Identities=18%  Similarity=0.169  Sum_probs=258.7

Q ss_pred             CCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCC
Q 037427           99 QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNL  178 (829)
Q Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L  178 (829)
                      .+++|||++|.|+++.+.+    |.++++|++|||++|.+++..+.+|.++++|++|+|++|++++..+  ..|.++++|
T Consensus        53 ~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSL  126 (635)
T ss_dssp             TCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG--GGGTTCTTC
T ss_pred             CCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH--HHhcCCCCC
Confidence            5666666666666655543    6666666666666666666556666666666666666666664332  456666666


Q ss_pred             CEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccc-cCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCC
Q 037427          179 EDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA-LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS  257 (829)
Q Consensus       179 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~  257 (829)
                      ++|+|++|.+++..+..|+++++|++|++++|.+.+. .|.   .++.+++|++|++++|++++..|             
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-------------  190 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYC-------------  190 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSCCCEECG-------------
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch---hhccchhhhhhcccCcccccccc-------------
Confidence            6666666666655555556666666666666655432 233   34455555555555555543222             


Q ss_pred             CCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhC
Q 037427          258 SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN  337 (829)
Q Consensus       258 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~  337 (829)
                                               ..+..+.+++.                      ....++++.|.+....+..+ .
T Consensus       191 -------------------------~~l~~L~~l~~----------------------~~~~~~ls~n~l~~i~~~~~-~  222 (635)
T 4g8a_A          191 -------------------------TDLRVLHQMPL----------------------LNLSLDLSLNPMNFIQPGAF-K  222 (635)
T ss_dssp             -------------------------GGGHHHHTCTT----------------------CCCEEECTTCCCCEECTTTT-T
T ss_pred             -------------------------ccccchhhhhh----------------------hhhhhhcccCcccccCcccc-c
Confidence                                     12222222211                      01112222222222111111 1


Q ss_pred             CCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcC------CCCCCCCCCCCCCEEEccCCcccccCchhhhhc
Q 037427          338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG------PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVY  411 (829)
Q Consensus       338 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~  411 (829)
                      ...++.+++++|.....++...+..++.++...+..+....      .....+.....+...++..+..........   
T Consensus       223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---  299 (635)
T 4g8a_A          223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII---  299 (635)
T ss_dssp             TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT---
T ss_pred             chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh---
Confidence            12234444444444333333334445555544443322211      111122222333333333222211100000   


Q ss_pred             cccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCC
Q 037427          412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGN  491 (829)
Q Consensus       412 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  491 (829)
                         ..+..+.+++.+++.++.+....  .+.....++.|++.+|.+.+..+.   .++.|+.+++..|.....  .....
T Consensus       300 ---~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~  369 (635)
T 4g8a_A          300 ---DLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVD  369 (635)
T ss_dssp             ---TTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCB
T ss_pred             ---hhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--ccccc
Confidence               00112345666666666554332  233445666666666666543322   345566666666665432  22345


Q ss_pred             CCCCCEEEccCCcccC--CChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccE
Q 037427          492 LSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT  569 (829)
Q Consensus       492 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  569 (829)
                      +++|+.+++++|.+..  ..+..+..+.+|+.++++.|......+....+++|+.+++..+......+...+..+++++.
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            6666666666666542  33445556666677776666665444433355555555555555544444444555555555


Q ss_pred             EEccCCcCCCcchhhhhcCCCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCC
Q 037427          570 LDLSYNSFSGNIPYWIERLIRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSS  648 (829)
Q Consensus       570 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~  648 (829)
                      +++++|.+.+..+..+..+++|++|++++|++. +..|..+..+++|                                 
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L---------------------------------  496 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------------------------------  496 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc---------------------------------
Confidence            555555555544544555555555555555422 2334444444444                                 


Q ss_pred             CCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCC
Q 037427          649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG  728 (829)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  728 (829)
                                                                  ++|||++|++++.+|..|+++++|++|+|++|+|++
T Consensus       497 --------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~  532 (635)
T 4g8a_A          497 --------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  532 (635)
T ss_dssp             --------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred             --------------------------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence                                                        455555555555555555555556666666666655


Q ss_pred             CccccccccccCCeeecCCCcCcccCCcccccC-CCCcEEeccCCccee
Q 037427          729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL-NALVVFSVAHNNLSA  776 (829)
Q Consensus       729 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g  776 (829)
                      ..|..|+++++|++|||++|+|++.+|+.+..+ ++|++|++++|++++
T Consensus       533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            555555555666666666666665555555555 456666666665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-45  Score=418.06  Aligned_cols=224  Identities=21%  Similarity=0.239  Sum_probs=122.2

Q ss_pred             CCcEEECCCCcCCCCccccc-----CCCCCCCEEEccCCcccCCCh-hhhhCC---CCCCEEeCCCCcCcccCCCCCCCC
Q 037427          470 RLEGLYMSDNNLYGNIPARL-----GNLSSLNDIMMASNHLQGPIP-LEFCQL---NYLEILDLSENNISGSLPSCSSHS  540 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~  540 (829)
                      +|++|++++|++++.+|..+     +.+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+... +....++
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~  324 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKIS  324 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCC
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCC
Confidence            44444444444444444444     4555555555555555  223 333332   4566666666665421 1112444


Q ss_pred             cccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCE
Q 037427          541 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRL  617 (829)
Q Consensus       541 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~  617 (829)
                      +|++|++++|++.+.+|.. +..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|. .+..+++|++
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             cccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            5555555555555544444 5666677777777777765  4455666677777777777777653443 3566666666


Q ss_pred             EECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEc
Q 037427          618 IDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDL  697 (829)
Q Consensus       618 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  697 (829)
                      |++++|++++.+|..+.                                                       ++|+.|++
T Consensus       404 L~Ls~N~l~~~~~~~l~-------------------------------------------------------~~L~~L~L  428 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP-------------------------------------------------------PRIKVLDL  428 (520)
T ss_dssp             EECCSSCCCGGGGGSCC-------------------------------------------------------TTCCEEEC
T ss_pred             EECcCCCCCcchhhhhc-------------------------------------------------------ccCCEEEC
Confidence            66666666554443221                                                       14555666


Q ss_pred             CCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCccc
Q 037427          698 SCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK  753 (829)
Q Consensus       698 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~  753 (829)
                      ++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++.
T Consensus       429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            666665 5555555666666666666666632222255555666666666665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.9e-44  Score=418.78  Aligned_cols=536  Identities=20%  Similarity=0.195  Sum_probs=353.5

Q ss_pred             cEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427          101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED  180 (829)
Q Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~  180 (829)
                      ++.+-++-+++.++..     +  -+++++|||++|.+++..+.+|.++++|++|||++|.|++..|  .+|.++++|++
T Consensus        34 ~~~~c~~~~l~~vP~~-----l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~L~~L~~  104 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDN-----L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLST  104 (635)
T ss_dssp             TEEECTTSCCSSCCSS-----S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCE
T ss_pred             CEEECCCCCcCccCCC-----C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh--hHhcCCCCCCE
Confidence            3456666666654322     2  1478899999999987777888999999999999998886544  67888888888


Q ss_pred             EecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccc-cCCccCcccccccCCCC
Q 037427          181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT-LPCLYLNQLTGNISSSP  259 (829)
Q Consensus       181 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~-~p~l~~~~~~g~i~~~~  259 (829)
                      |+|++|++++..+..|+++++|++|++++|++++..+.   .++++++|++|++++|.+++. +|             ..
T Consensus       105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~~~~~-------------~~  168 (635)
T 4g8a_A          105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLP-------------EY  168 (635)
T ss_dssp             EECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCC-------------GG
T ss_pred             EEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh---hhhcCcccCeeccccCccccCCCc-------------hh
Confidence            88888888877777778888888888888777765444   466666677777766665421 11             11


Q ss_pred             CCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCC
Q 037427          260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH  339 (829)
Q Consensus       260 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~  339 (829)
                      +..+++|++|++++|+++                                                   +..+..+..+.
T Consensus       169 ~~~l~~L~~L~L~~N~l~---------------------------------------------------~~~~~~l~~L~  197 (635)
T 4g8a_A          169 FSNLTNLEHLDLSSNKIQ---------------------------------------------------SIYCTDLRVLH  197 (635)
T ss_dssp             GGGCTTCCEEECCSSCCC---------------------------------------------------EECGGGGHHHH
T ss_pred             hccchhhhhhcccCcccc---------------------------------------------------ccccccccchh
Confidence            133333344333333322                                                   22222232222


Q ss_pred             ----CcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccc
Q 037427          340 ----DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSH  415 (829)
Q Consensus       340 ----~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~  415 (829)
                          ....++++.|.+. .++...+ ....++.+++.+|                        .....++....      
T Consensus       198 ~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n------------------------~~~~~~~~~~~------  245 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNN------------------------FDSLNVMKTCI------  245 (635)
T ss_dssp             TCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESC------------------------CSSHHHHHHHH------
T ss_pred             hhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcc------------------------cccccccchhh------
Confidence                2335666666665 2332212 2223444444444                        32222111111      


Q ss_pred             cccCCCcccEEEccccc------ccccCccccccccCCcEEecccccCCC---ccCccCCCCCCCcEEECCCCcCCCCcc
Q 037427          416 LAMGCFNLEYLVLSENS------LHGQLFSKKNYLRKLARLHLDANYFTG---EIPKSLSNCSRLEGLYMSDNNLYGNIP  486 (829)
Q Consensus       416 ~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~p  486 (829)
                        .++..++...+..+.      +.......+..+..+....+..+....   ..+..+..+.+++.+++.++.+...  
T Consensus       246 --~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--  321 (635)
T 4g8a_A          246 --QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--  321 (635)
T ss_dssp             --HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--
T ss_pred             --cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--
Confidence              112233333322211      111222233344444444444433221   2223445566777777777766533  


Q ss_pred             cccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccC--cCCccccCCC
Q 037427          487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYG--PLKYGTFFNR  564 (829)
Q Consensus       487 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~l~~l  564 (829)
                      ..+.....|+.|++.+|.+.+..+   ..+..|+.+++..|.+.. .+....+++|+.+++++|.+..  ..+.. +..+
T Consensus       322 ~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~  396 (635)
T 4g8a_A          322 KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGT  396 (635)
T ss_dssp             GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHH-HHSC
T ss_pred             cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccc-hhhh
Confidence            234556677777777777765433   245667777777777653 3334467778888888877643  23333 5677


Q ss_pred             CCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC-cccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCC
Q 037427          565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD  643 (829)
Q Consensus       565 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  643 (829)
                      .+|+.+++..+.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+.+..|..+....      
T Consensus       397 ~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~------  469 (635)
T 4g8a_A          397 ISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------  469 (635)
T ss_dssp             SCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT------
T ss_pred             hhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch------
Confidence            889999999988764 45567788999999999887765544 5678899999999999999887776655443      


Q ss_pred             CCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcC-CCCCCcccccCCCCCEEECC
Q 037427          644 NVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL-TGEIPPQIGKLTNIRALNFS  722 (829)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~ip~~l~~l~~L~~L~Ls  722 (829)
                                                                     .++.|++++|++ .+.+|..|..+++|++|+|+
T Consensus       470 -----------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls  502 (635)
T 4g8a_A          470 -----------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  502 (635)
T ss_dssp             -----------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             -----------------------------------------------hhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence                                                           788999999975 45688899999999999999


Q ss_pred             CCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCCCCcCCCCCCccccccc
Q 037427          723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCS  802 (829)
Q Consensus       723 ~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  802 (829)
                      +|++++.+|..|+++++|++|+|++|+|++..|..|..+++|++|++++|+|++.+|..-..    .+            
T Consensus       503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----l~------------  566 (635)
T 4g8a_A          503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FP------------  566 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC----CC------------
T ss_pred             CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh----hh------------
Confidence            99999999999999999999999999999999999999999999999999999998864211    00            


Q ss_pred             cCCCCCCcccchhhhcCCccccccccC
Q 037427          803 TMYNGEGHCKYVTAIYAPHTCICKYKC  829 (829)
Q Consensus       803 ~~~~~~~~~~~~~~~~~p~~C~c~~~~  829 (829)
                            .+...++...|||+|||+++|
T Consensus       567 ------~~L~~L~L~~Np~~C~C~~~~  587 (635)
T 4g8a_A          567 ------SSLAFLNLTQNDFACTCEHQS  587 (635)
T ss_dssp             ------TTCCEEECTTCCBCCSGGGHH
T ss_pred             ------CcCCEEEeeCCCCcccCCcHH
Confidence                  123458899999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-45  Score=430.34  Aligned_cols=375  Identities=19%  Similarity=0.234  Sum_probs=253.7

Q ss_pred             CCCCCCcChhhhCCCCcCEEEcCCCCCCCC-CchHHhhcCCCCCEEEccCCcCcCCCCCCCC--CCCCCCEEEccCCccc
Q 037427          325 SDIHATFPKFLYNQHDLELVDFSDSNLKGE-FPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ--PHWHLDALHVSKNFFQ  401 (829)
Q Consensus       325 ~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~  401 (829)
                      |.+++ +|..+.++++|++|+|++|++++. +|...   .+      .+.|.+.+.+|..+.  .+++|++|++++|.+.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~~------~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~  504 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---ED------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNM  504 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---SC------TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---cc------cccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence            44544 555566666666666666666541 00000   00      000111112444444  5555555555555555


Q ss_pred             ccCchhhhhccccccccCCCcccEEEccccc-ccc-cCcccccccc-------CCcEEecccccCCCccCc--cCCCCCC
Q 037427          402 GNIPLEIGVYFPSHLAMGCFNLEYLVLSENS-LHG-QLFSKKNYLR-------KLARLHLDANYFTGEIPK--SLSNCSR  470 (829)
Q Consensus       402 ~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~  470 (829)
                      +.+|..+..         +++|++|++++|+ +++ .+|..+..++       +|+.|++++|.++ .+|.  .+.++++
T Consensus       505 ~~iP~~l~~---------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          505 TQLPDFLYD---------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             CSCCGGGGG---------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             ccChHHHhC---------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            555544432         3455555555555 554 4444444443       6777777777776 5666  6667777


Q ss_pred             CcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCC-CCEEeCCCCcCcccCCCCC-CC--CcccEEE
Q 037427          471 LEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY-LEILDLSENNISGSLPSCS-SH--STIQQVH  546 (829)
Q Consensus       471 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~-~~--~~L~~L~  546 (829)
                      |++|++++|+++ .+| .++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+|..+ ..  ++|+.|+
T Consensus       575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred             CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence            777777777776 556 6667777777777777776 56666777776 777777777776 555554 22  3477777


Q ss_pred             ccCCcccCcCCccc--cC--CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCC--------CCC
Q 037427          547 LSKNMLYGPLKYGT--FF--NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCG--------LKQ  614 (829)
Q Consensus       547 L~~n~l~~~~~~~~--l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~  614 (829)
                      +++|++.+.+|...  +.  .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|..+..        +++
T Consensus       651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~  729 (876)
T 4ecn_A          651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL  729 (876)
T ss_dssp             CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred             CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence            77777766554310  11  4458999999999999544444568899999999999998 56654433        238


Q ss_pred             CCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcce
Q 037427          615 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYG  694 (829)
Q Consensus       615 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  694 (829)
                      |+.|+|++|+++ .+|..+..                                                   ..+++|+.
T Consensus       730 L~~L~Ls~N~L~-~lp~~l~~---------------------------------------------------~~l~~L~~  757 (876)
T 4ecn_A          730 LTTIDLRFNKLT-SLSDDFRA---------------------------------------------------TTLPYLSN  757 (876)
T ss_dssp             CCEEECCSSCCC-CCCGGGST---------------------------------------------------TTCTTCCE
T ss_pred             ccEEECCCCCCc-cchHHhhh---------------------------------------------------ccCCCcCE
Confidence            999999999998 66765540                                                   01338999


Q ss_pred             EEcCCCcCCCCCCcccccCCCCCEEECCC------CCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEe
Q 037427          695 VDLSCNKLTGEIPPQIGKLTNIRALNFSH------NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS  768 (829)
Q Consensus       695 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  768 (829)
                      |+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|.++++|+.|+|++|++ +.+|..+.  ++|+.|+
T Consensus       758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld  833 (876)
T 4ecn_A          758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD  833 (876)
T ss_dssp             EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred             EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence            9999999997 899999999999999976      889999999999999999999999999 78998876  6999999


Q ss_pred             ccCCcceeecCC
Q 037427          769 VAHNNLSAAERN  780 (829)
Q Consensus       769 ls~N~l~g~ip~  780 (829)
                      |++|++....+.
T Consensus       834 Ls~N~l~~i~~~  845 (876)
T 4ecn_A          834 IADNPNISIDVT  845 (876)
T ss_dssp             CCSCTTCEEECG
T ss_pred             CCCCCCCccChH
Confidence            999999876553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8e-44  Score=407.07  Aligned_cols=463  Identities=19%  Similarity=0.194  Sum_probs=304.0

Q ss_pred             EEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCC
Q 037427           71 KALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLS  150 (829)
Q Consensus        71 ~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~  150 (829)
                      +.+|++++++.      .++....   ++|++|++++|.+++..+..    |.++++|++|+|++|.+++..|..|++++
T Consensus         3 ~~l~ls~n~l~------~ip~~~~---~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLI------HVPKDLS---QKTTILNISQNYISELWTSD----ILSLSKLRILIISHNRIQYLDISVFKFNQ   69 (520)
T ss_dssp             CEEECTTSCCS------SCCCSCC---TTCSEEECCSSCCCCCCHHH----HTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred             ceEecCCCCcc------ccccccc---ccccEEECCCCcccccChhh----ccccccccEEecCCCccCCcChHHhhccc
Confidence            35788877652      1332222   78999999999988776543    78889999999999999888888899999


Q ss_pred             CCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC
Q 037427          151 SLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL  229 (829)
Q Consensus       151 ~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L  229 (829)
                      +|++|+|++|.++ .+|  ..  .+++|++|+|++|.+++ .+|..++++++|++|++++|.+.+.      .+..+++|
T Consensus        70 ~L~~L~Ls~N~l~-~lp--~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L  138 (520)
T 2z7x_B           70 ELEYLDLSHNKLV-KIS--CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPIAHL  138 (520)
T ss_dssp             TCCEEECCSSCCC-EEE--CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------GGGGGTTS
T ss_pred             CCCEEecCCCcee-ecC--cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------hccccccc
Confidence            9999999999888 455  23  78899999999999887 4678889999999999999888763      45566677


Q ss_pred             --cEEECCCccC--ccccC-CccCcccccccCCCCCCCCC-CCCEEEcccccCccccCchhhcCCCCCceeeccccceee
Q 037427          230 --QELHMGGNDL--RGTLP-CLYLNQLTGNISSSPLIHLT-SIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYV  303 (829)
Q Consensus       230 --~~L~L~~n~l--~g~~p-~l~~~~~~g~i~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~  303 (829)
                        ++|++++|.+  .+..| .+              ..+. +...+++++|.+.+.++...+.++++|+.++++.|....
T Consensus       139 ~L~~L~l~~n~l~~~~~~~~~l--------------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  204 (520)
T 2z7x_B          139 NISKVLLVLGETYGEKEDPEGL--------------QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN  204 (520)
T ss_dssp             CEEEEEEEECTTTTSSCCTTTT--------------TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred             eeeEEEeecccccccccccccc--------------cccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence              8999988888  55555 22              3332 233567777777766666566667766666666553100


Q ss_pred             ccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhh--cCCCCCEEEccCCcCcCCCC
Q 037427          304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK--NNPNLSTLVLRNNSLSGPFQ  381 (829)
Q Consensus       304 ~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~~  381 (829)
                      ..                   ..+.+.+| .+..+++|+.|++++|.+.+..+..+..  ..++|++|++++|.+++.+|
T Consensus       205 ~~-------------------~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  264 (520)
T 2z7x_B          205 KC-------------------SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD  264 (520)
T ss_dssp             TT-------------------HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred             cc-------------------ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc
Confidence            00                   00223333 5667777888888877776543322211  24577777777777776666


Q ss_pred             CCC-----CCCCCCCEEEccCCcccccCc-hhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccc
Q 037427          382 TPI-----QPHWHLDALHVSKNFFQGNIP-LEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDAN  455 (829)
Q Consensus       382 ~~~-----~~l~~L~~L~ls~n~l~~~ip-~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  455 (829)
                      ..+     ..+++|+.++++.|.+  .+| ..+...++                              -.+|+.|++++|
T Consensus       265 ~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~------------------------------~~~L~~L~l~~n  312 (520)
T 2z7x_B          265 FRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFS------------------------------NMNIKNFTVSGT  312 (520)
T ss_dssp             CCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHH------------------------------TCCCSEEEEESS
T ss_pred             cchhhcccccCceeEeccccccce--ecchhhhhcccc------------------------------cCceeEEEcCCC
Confidence            665     5555555666655555  333 22221111                              033444444444


Q ss_pred             cCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccC--CChhhhhCCCCCCEEeCCCCcCcccC
Q 037427          456 YFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLSENNISGSL  533 (829)
Q Consensus       456 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~  533 (829)
                      .+.+..  .+..+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+
T Consensus       313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence            443211  11345555555555555555555555555566666666665554  33455566666666666666666534


Q ss_pred             CCC-C-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCc-ccC
Q 037427          534 PSC-S-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN-QLC  610 (829)
Q Consensus       534 ~~~-~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~  610 (829)
                      |.. + .+++|++|++++|++++.++.. +.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|. .+.
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  465 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD  465 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhc
Confidence            432 2 5566666666666665555543 32  68899999999998 67777778999999999999998 4555 488


Q ss_pred             CCCCCCEEECcCCcCccCCC
Q 037427          611 GLKQLRLIDLSNNNLFGQIP  630 (829)
Q Consensus       611 ~l~~L~~L~Ls~N~l~~~~p  630 (829)
                      .+++|++|++++|++++..+
T Consensus       466 ~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          466 RLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcccEEECcCCCCcccCC
Confidence            89999999999999986543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.3e-42  Score=393.59  Aligned_cols=128  Identities=21%  Similarity=0.237  Sum_probs=70.6

Q ss_pred             CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427           98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN  177 (829)
Q Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~  177 (829)
                      ...+++|+++|++++... .    +.  ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|  ..|.++++
T Consensus        31 ~~~~~l~ls~~~L~~ip~-~----~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~  101 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPK-D----LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQD  101 (562)
T ss_dssp             --CCEEECTTSCCCSCCT-T----SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--TTTTTCTT
T ss_pred             CCCcEEEcCCCCCccCCC-C----CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--HHhCCCCC
Confidence            334667777777665332 1    21  566666666666666656666666666666666666665544  45666666


Q ss_pred             CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccc-cCCCccccCCCCCCcEEECCCccCc
Q 037427          178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA-LGDDEEGLCRLGHLQELHMGGNDLR  240 (829)
Q Consensus       178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~l~~L~~L~L~~n~l~  240 (829)
                      |++|+|++|.++. +|..  .+++|++|++++|++.+. +|.   .++++++|++|++++|.++
T Consensus       102 L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~---~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          102 LEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCK---EFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCG---GGGGCTTCCEEEEECSBCC
T ss_pred             CCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchH---hhcccCcccEEecCCCccc
Confidence            6666666666552 2322  455555555555555432 222   3444455555555544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.6e-41  Score=387.37  Aligned_cols=459  Identities=20%  Similarity=0.205  Sum_probs=303.5

Q ss_pred             EEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCC
Q 037427           71 KALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLS  150 (829)
Q Consensus        71 ~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~  150 (829)
                      +.++++++++..      ++...   .++|++|++++|.+++..+.+    |.++++|++|+|++|.+++..|.+|++++
T Consensus        34 ~~l~ls~~~L~~------ip~~~---~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  100 (562)
T 3a79_B           34 SMVDYSNRNLTH------VPKDL---PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQ  100 (562)
T ss_dssp             CEEECTTSCCCS------CCTTS---CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             cEEEcCCCCCcc------CCCCC---CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence            678998886531      33222   289999999999999887654    89999999999999999998899999999


Q ss_pred             CCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCch-hhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC
Q 037427          151 SLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS-ILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL  229 (829)
Q Consensus       151 ~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L  229 (829)
                      +|++|+|++|.++ .+|  ..  .+++|++|++++|.+++. .|..++++++|++|++++|.+.+.      .+..+++|
T Consensus       101 ~L~~L~Ls~N~l~-~lp--~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L  169 (562)
T 3a79_B          101 DLEYLDVSHNRLQ-NIS--CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHL  169 (562)
T ss_dssp             TCCEEECTTSCCC-EEC--SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTS
T ss_pred             CCCEEECCCCcCC-ccC--cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------chhhhhhc
Confidence            9999999999998 566  33  899999999999999974 468999999999999999998763      34444555


Q ss_pred             --cEEECCCccC--ccccC-CccCcccccccCCCCCCCCC-CCCEEEcccccCccccCchhhcCCCCCceeeccccceee
Q 037427          230 --QELHMGGNDL--RGTLP-CLYLNQLTGNISSSPLIHLT-SIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYV  303 (829)
Q Consensus       230 --~~L~L~~n~l--~g~~p-~l~~~~~~g~i~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~  303 (829)
                        ++|++++|.+  ++..| .+              ..+. ..-.+++++|.+.+.++...+..+++|+.++++.|....
T Consensus       170 ~L~~L~L~~n~l~~~~~~~~~l--------------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  235 (562)
T 3a79_B          170 HLSCILLDLVSYHIKGGETESL--------------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC  235 (562)
T ss_dssp             CEEEEEEEESSCCCCSSSCCEE--------------EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred             eeeEEEeecccccccccCcccc--------------cccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc
Confidence              9999999998  66555 22              3322 112567788877765555555556666665555543100


Q ss_pred             ccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcCC
Q 037427          304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSGP  379 (829)
Q Consensus       304 ~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~  379 (829)
                      .                     .+ ...+..+..+++|+.++++++.+.+.    ++..  ...++|++|++++|.+++.
T Consensus       236 ~---------------------~l-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~  291 (562)
T 3a79_B          236 Q---------------------RL-MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITER  291 (562)
T ss_dssp             H---------------------HH-HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSC
T ss_pred             c---------------------hH-HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeecc
Confidence            0                     00 01123455666677777766665532    1222  1234667777777666665


Q ss_pred             CCCCC-----CCCCCCCEEEccCCcccccCch-hhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecc
Q 037427          380 FQTPI-----QPHWHLDALHVSKNFFQGNIPL-EIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLD  453 (829)
Q Consensus       380 ~~~~~-----~~l~~L~~L~ls~n~l~~~ip~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  453 (829)
                      +|..+     ..++.|+.+++..+.+  .+|. .+...+                              ...+|++|+++
T Consensus       292 ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~------------------------------~~~~L~~L~l~  339 (562)
T 3a79_B          292 IDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF------------------------------AEMNIKMLSIS  339 (562)
T ss_dssp             CCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH------------------------------HTCCCSEEEEE
T ss_pred             ccchhhhcccccchheehhhccccee--ecChhhhhhhh------------------------------ccCcceEEEcc
Confidence            55544     3333333444444433  2231 111100                              11345555555


Q ss_pred             cccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCC--ChhhhhCCCCCCEEeCCCCcCcc
Q 037427          454 ANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP--IPLEFCQLNYLEILDLSENNISG  531 (829)
Q Consensus       454 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~  531 (829)
                      +|.+....  ....+++|++|++++|++++..|..++++++|++|++++|++++.  +|..+..+++|++|++++|++++
T Consensus       340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence            55543211  114555666666666666655666666666666666666666642  23456666667777777776665


Q ss_pred             cCCCC-C-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcc-
Q 037427          532 SLPSC-S-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ-  608 (829)
Q Consensus       532 ~~~~~-~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-  608 (829)
                      .+|.. + .+++|++|++++|++++.++.. +.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. 
T Consensus       418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~  492 (562)
T 3a79_B          418 HAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV  492 (562)
T ss_dssp             CCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred             ccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence            44432 2 5667777777777776555443 22  68888888888888 56666668889999999999988 45554 


Q ss_pred             cCCCCCCCEEECcCCcCccCCC
Q 037427          609 LCGLKQLRLIDLSNNNLFGQIP  630 (829)
Q Consensus       609 l~~l~~L~~L~Ls~N~l~~~~p  630 (829)
                      +..+++|+.|++++|++.+..|
T Consensus       493 ~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          493 FDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTCTTCCCEECCSCCBCCCHH
T ss_pred             HhcCCCCCEEEecCCCcCCCcc
Confidence            8888999999999998876544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-39  Score=365.63  Aligned_cols=372  Identities=18%  Similarity=0.151  Sum_probs=273.3

Q ss_pred             EEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCc
Q 037427          343 LVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFN  422 (829)
Q Consensus       343 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~  422 (829)
                      .++.+++.++ .+|.    -.++|++|++++|.+++..+..+..+++|++|++++|.+.+.++..        .+.++++
T Consensus        14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~--------~~~~l~~   80 (455)
T 3v47_A           14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN--------TFRGLSS   80 (455)
T ss_dssp             EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT--------TTTTCTT
T ss_pred             ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc--------ccccccc
Confidence            3445555554 4553    1255666666666666655666666666666666666665444322        1223566


Q ss_pred             ccEEEcccccccccCccccccccCCcEEecccccCCCccCcc--CCCCCCCcEEECCCCcCCCCcccc-cCCCCCCCEEE
Q 037427          423 LEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS--LSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIM  499 (829)
Q Consensus       423 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~  499 (829)
                      |++|++++|.+++..|..+..+++|++|++++|.+++..+..  +..+++|++|++++|++++..|.. +.++++|++|+
T Consensus        81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  160 (455)
T 3v47_A           81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD  160 (455)
T ss_dssp             CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred             CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence            777777777777666667777777777777777776644433  677777777777777777665654 67777777777


Q ss_pred             ccCCcccCCChhhhhCC--CCCCEEeCCCCcCcccCCCC---------CCCCcccEEEccCCcccCcCCccccC---CCC
Q 037427          500 MASNHLQGPIPLEFCQL--NYLEILDLSENNISGSLPSC---------SSHSTIQQVHLSKNMLYGPLKYGTFF---NRS  565 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~l~---~l~  565 (829)
                      +++|++.+..+..+..+  .+|+.|++++|.+.+..+..         +.+++|++|++++|++.+..+.. +.   ..+
T Consensus       161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~  239 (455)
T 3v47_A          161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGT  239 (455)
T ss_dssp             CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTC
T ss_pred             CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhcccccc
Confidence            77777777766666654  56777777777776543322         24467777777777776655543 32   236


Q ss_pred             CccEEEccCCcCCCc----------chhhhhc--CCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427          566 SIVTLDLSYNSFSGN----------IPYWIER--LIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL  633 (829)
Q Consensus       566 ~L~~L~Ls~n~l~~~----------~~~~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  633 (829)
                      +|+.|++++|.+.+.          .+..+..  .++|++|++++|++++..|..+..+++|++|++++|++++..|..+
T Consensus       240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  319 (455)
T 3v47_A          240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF  319 (455)
T ss_dssp             CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence            777788777754432          2222332  3689999999999999999999999999999999999998878777


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccC
Q 037427          634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL  713 (829)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l  713 (829)
                      ..+.                                                     +|++|++++|++++..|..++.+
T Consensus       320 ~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          320 WGLT-----------------------------------------------------HLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTCT-----------------------------------------------------TCCEEECCSSCCCEECGGGGTTC
T ss_pred             cCcc-----------------------------------------------------cCCEEECCCCccCCcChhHhcCc
Confidence            6554                                                     89999999999998889999999


Q ss_pred             CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|.-
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            99999999999999999999999999999999999999877778899999999999999999998853

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.2e-39  Score=362.66  Aligned_cols=367  Identities=20%  Similarity=0.180  Sum_probs=306.7

Q ss_pred             cCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEE
Q 037427          315 FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH  394 (829)
Q Consensus       315 ~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  394 (829)
                      .++++|+|++|.+.+..|..+..+++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            47888999999998888889999999999999999998778766688999999999999999988888999999999999


Q ss_pred             ccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccc-cccccCCcEEecccccCCCccCccCCCC--CCC
Q 037427          395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSK-KNYLRKLARLHLDANYFTGEIPKSLSNC--SRL  471 (829)
Q Consensus       395 ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L  471 (829)
                      +++|.+++.+|..       ..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+  .+|
T Consensus       110 L~~n~l~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          110 LTQCNLDGAVLSG-------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             CTTSCCBTHHHHS-------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             CCCCCCCccccCc-------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence            9999998755433       12234679999999999999887765 7889999999999999998888877766  688


Q ss_pred             cEEECCCCcCCCCcccc--------cCCCCCCCEEEccCCcccCCChhhhhCC---CCCCEEeCCCCcCcccCCCCCCCC
Q 037427          472 EGLYMSDNNLYGNIPAR--------LGNLSSLNDIMMASNHLQGPIPLEFCQL---NYLEILDLSENNISGSLPSCSSHS  540 (829)
Q Consensus       472 ~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~  540 (829)
                      +.|++++|.+.+..+..        +..+++|++|++++|++.+..|..+...   ++|+.|++++|...+........+
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence            99999999988655443        2356789999999999888877777654   788888888887664322211111


Q ss_pred             cccEEEccCCcccCcCCccccC--CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 037427          541 TIQQVHLSKNMLYGPLKYGTFF--NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLI  618 (829)
Q Consensus       541 ~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  618 (829)
                                   +..+.. +.  ..++|++|++++|++.+..|.++..+++|++|++++|++++..|..+.++++|++|
T Consensus       263 -------------~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  328 (455)
T 3v47_A          263 -------------DPDNFT-FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL  328 (455)
T ss_dssp             -------------CCCTTT-TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             -------------cCcccc-cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence                         111111 22  24689999999999999999999999999999999999998889999999999999


Q ss_pred             ECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcC
Q 037427          619 DLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLS  698 (829)
Q Consensus       619 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  698 (829)
                      ++++|++++..|..++.+.                                                     +|++|+|+
T Consensus       329 ~Ls~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls  355 (455)
T 3v47_A          329 NLSQNFLGSIDSRMFENLD-----------------------------------------------------KLEVLDLS  355 (455)
T ss_dssp             ECCSSCCCEECGGGGTTCT-----------------------------------------------------TCCEEECC
T ss_pred             ECCCCccCCcChhHhcCcc-----------------------------------------------------cCCEEECC
Confidence            9999999877776666544                                                     89999999


Q ss_pred             CCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427          699 CNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       699 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                      +|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++.+|
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999999999999999998888888999999999999999999887

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.2e-39  Score=357.48  Aligned_cols=320  Identities=22%  Similarity=0.246  Sum_probs=133.3

Q ss_pred             CCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCc
Q 037427          199 FTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ  277 (829)
Q Consensus       199 l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~  277 (829)
                      .+.|++|++++|.+ +.+|.   +++++++|++|++++|.+.|.+| .+              +++++|+.+++..|.. 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~---~i~~L~~L~~L~l~~n~~~~~~p~~~--------------~~l~~L~~l~l~~c~~-   70 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPV---EAENVKSKTEYYNAWSEWERNAPPGN--------------GEQREMAVSRLRDCLD-   70 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTS--------------CCCHHHHHHHHHHHHH-
T ss_pred             cccchhhhcccCch-hhCCh---hHhcccchhhhhccCCcccccCCccc--------------ccchhcchhhhhhhhc-
Confidence            46677777777777 56666   66777777777777777766665 33              4444443333333310 


Q ss_pred             cccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCch
Q 037427          278 IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPN  357 (829)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  357 (829)
                                 .+++.+++++|.+...+..      ..+|++|++++|.+.+ +|..   .++|++|++++|++. .+|.
T Consensus        71 -----------~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~  128 (454)
T 1jl5_A           71 -----------RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD  128 (454)
T ss_dssp             -----------HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS
T ss_pred             -----------cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC
Confidence                       2233444444433322210      1244445555554444 3321   244555555555554 2322


Q ss_pred             HHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccC
Q 037427          358 WLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL  437 (829)
Q Consensus       358 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~  437 (829)
                      .    .++|++|++++|.+++ +| .+..+++|++|++++|++++ +|.                               
T Consensus       129 ~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~-------------------------------  170 (454)
T 1jl5_A          129 L----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD-------------------------------  170 (454)
T ss_dssp             C----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC-------------------------------
T ss_pred             C----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC-------------------------------
Confidence            1    1345555555555544 22 34444555555555554442 221                               


Q ss_pred             ccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCC
Q 037427          438 FSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN  517 (829)
Q Consensus       438 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  517 (829)
                        .   .++|++|++++|++++ +| .++++++|++|++++|++++ +|...   ++|++|++++|.+. .+| .+..++
T Consensus       171 --~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~  237 (454)
T 1jl5_A          171 --L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLP  237 (454)
T ss_dssp             --C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred             --C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCC
Confidence              1   1244444444444443 23 24444455555555554442 22211   34455555555444 233 244455


Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEcc
Q 037427          518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA  597 (829)
Q Consensus       518 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  597 (829)
                      +|++|++++|++++ +|..  .++|++|++++|++.+ +|..    .++|++|++++|++++. |..   .++|++|+++
T Consensus       238 ~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~  305 (454)
T 1jl5_A          238 FLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGL-SEL---PPNLYYLNAS  305 (454)
T ss_dssp             TCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEE-SCC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCCc-cccc--ccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcc-cCc---CCcCCEEECc
Confidence            55555555555442 2221  2445555555555433 3321    24555555555555531 110   1355556666


Q ss_pred             CCcccccCCcccCCC-CCCCEEECcCCcCcc
Q 037427          598 NNNLEGEVPNQLCGL-KQLRLIDLSNNNLFG  627 (829)
Q Consensus       598 ~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~  627 (829)
                      +|++++ ++    .+ ++|++|++++|++++
T Consensus       306 ~N~l~~-i~----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          306 SNEIRS-LC----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             SSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred             CCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence            555553 11    12 355666666665553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.5e-39  Score=358.83  Aligned_cols=421  Identities=20%  Similarity=0.246  Sum_probs=209.4

Q ss_pred             CCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCC
Q 037427          149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGH  228 (829)
Q Consensus       149 L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~  228 (829)
                      .++|++|++++|.+ |.+|  ..++++++|++|++++|.+.+.+|..++++++|+.+++..|..              .+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP--~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~--------------~~   72 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMP--VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD--------------RQ   72 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH--------------HT
T ss_pred             cccchhhhcccCch-hhCC--hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc--------------cC
Confidence            46677777777776 5666  5666666666666666666666666666666665555544421              24


Q ss_pred             CcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCC
Q 037427          229 LQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESS  308 (829)
Q Consensus       229 L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  308 (829)
                      +++|++++|.+++ +|.                ..++|++|++++|.+++ ++.    ..+                   
T Consensus        73 l~~L~l~~~~l~~-lp~----------------~~~~L~~L~l~~n~l~~-lp~----~~~-------------------  111 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPE----------------LPPHLESLVASCNSLTE-LPE----LPQ-------------------  111 (454)
T ss_dssp             CSEEECTTSCCSC-CCS----------------CCTTCSEEECCSSCCSS-CCC----CCT-------------------
T ss_pred             CCEEEecCCcccc-CCC----------------CcCCCCEEEccCCcCCc-ccc----ccC-------------------
Confidence            6788888887764 331                13577888888887764 331    123                   


Q ss_pred             CCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCC
Q 037427          309 HSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW  388 (829)
Q Consensus       309 ~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  388 (829)
                             +|++|++++|.+.+. |..   .++|++|++++|++.+ +|.  ++++++|++|++++|.+++ +|..   ..
T Consensus       112 -------~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~  173 (454)
T 1jl5_A          112 -------SLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKK-LPDL---PP  173 (454)
T ss_dssp             -------TCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             -------CCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcc-cCCC---cc
Confidence                   455555555555442 211   1589999999999985 884  7899999999999999986 3332   24


Q ss_pred             CCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCC
Q 037427          389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNC  468 (829)
Q Consensus       389 ~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  468 (829)
                      +|++|++++|.+++ +| .+         .++++|++|++++|.+++ +|..   .++|++|++++|.++ .+|. +..+
T Consensus       174 ~L~~L~L~~n~l~~-l~-~~---------~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l  236 (454)
T 1jl5_A          174 SLEFIAAGNNQLEE-LP-EL---------QNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNL  236 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CC---------TTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTC
T ss_pred             cccEEECcCCcCCc-Cc-cc---------cCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCC
Confidence            78888888888775 33 11         234566666666666654 2221   235556666666555 3442 5555


Q ss_pred             CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEcc
Q 037427          469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS  548 (829)
Q Consensus       469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~  548 (829)
                      ++|++|++++|++++ +|..   +++|++|++++|++++                         +|..  .++|++|+++
T Consensus       237 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-------------------------l~~~--~~~L~~L~ls  285 (454)
T 1jl5_A          237 PFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-------------------------LPEL--PQSLTFLDVS  285 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-------------------------CCCC--CTTCCEEECC
T ss_pred             CCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-------------------------cCcc--cCcCCEEECc
Confidence            555555555555553 2221   2445555555554443                         2221  2445555555


Q ss_pred             CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcC-CCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427          549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL-IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG  627 (829)
Q Consensus       549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  627 (829)
                      +|++.+ ++.  +  .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|++|++++|++++
T Consensus       286 ~N~l~~-l~~--~--~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~  351 (454)
T 1jl5_A          286 ENIFSG-LSE--L--PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE  351 (454)
T ss_dssp             SSCCSE-ESC--C--CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCccCc-ccC--c--CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence            555533 111  1  1466777777777664 22    22 477788888887774 5543   4678888888887763


Q ss_pred             CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC--C
Q 037427          628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG--E  705 (829)
Q Consensus       628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~  705 (829)
                       +|.   .                                                     +++|++|++++|++++  .
T Consensus       352 -lp~---~-----------------------------------------------------l~~L~~L~L~~N~l~~l~~  374 (454)
T 1jl5_A          352 -VPE---L-----------------------------------------------------PQNLKQLHVEYNPLREFPD  374 (454)
T ss_dssp             -CCC---C-----------------------------------------------------CTTCCEEECCSSCCSSCCC
T ss_pred             -ccc---h-----------------------------------------------------hhhccEEECCCCCCCcCCC
Confidence             443   1                                                     1267788888888887  6


Q ss_pred             CCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc--cCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG--KIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       706 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      +|..++.        |+.|.+.+.+|..   +++|+.||+++|++++  .+|.+      ++.|.+.+|.+.+.+|..
T Consensus       375 ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          375 IPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             CCTTCCE--------EECCC----------------------------------------------------------
T ss_pred             ChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence            6665543        3457777777764   4788899999999987  66654      455678888888887754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.1e-38  Score=335.90  Aligned_cols=205  Identities=29%  Similarity=0.496  Sum_probs=120.0

Q ss_pred             CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCcccccccccccCcccc
Q 037427           19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCK--WEGVECNTST--GRVKALYLSSKRQFLYSTAGQLNASLL   94 (829)
Q Consensus        19 ~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l   94 (829)
                      +.|.++|++||++||+++.++. .+++|.   .+++||.  |+||+|+..+  ++|++|+|+++.+   .+...+ +..+
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l---~~~~~~-~~~l   72 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL---PKPYPI-PSSL   72 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC---SSCEEC-CGGG
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCc---cCCccc-ChhH
Confidence            3699999999999999997554 789996   4568998  9999998654  7899999887754   121011 2344


Q ss_pred             cCCCCCcEEeCCC-CCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCcccccc
Q 037427           95 TPFQQLETLHLDS-NNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLD  173 (829)
Q Consensus        95 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~  173 (829)
                      ..+++|++|++++ |.+.+.+|..    +.++++|++|++++|.+++.+|..|.++++|++|+|++|.+++.+|  ..+.
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~  146 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--PSIS  146 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGG
T ss_pred             hCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC--hHHh
Confidence            5555555555553 5555444432    4555555555555555555555555555555555555555554444  4455


Q ss_pred             CCCCCCEEecCCCCCCchhhHhhhcCC-CCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCcc
Q 037427          174 NFTNLEDLTLDYSSLHISILKSIAAFT-SLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG  241 (829)
Q Consensus       174 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g  241 (829)
                      ++++|++|++++|.+++.+|..++.++ +|++|++++|++.+.+|.   .+..++ |++|++++|.+++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccC
Confidence            555555555555555544455555544 455555555555444444   333333 4444544444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.8e-36  Score=333.22  Aligned_cols=210  Identities=18%  Similarity=0.135  Sum_probs=120.3

Q ss_pred             hhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccc
Q 037427          335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPS  414 (829)
Q Consensus       335 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~  414 (829)
                      +..+++|+.|++++|++++ ++   ++.+++|++|++++|++++. |  +..+++|+.|++++|++++..+         
T Consensus       187 l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~---------  250 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV---------  250 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC---------
T ss_pred             cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH---------
Confidence            3444556666666666663 22   45566666666666666652 2  5555566666666665554211         


Q ss_pred             ccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCC
Q 037427          415 HLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSS  494 (829)
Q Consensus       415 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  494 (829)
                         ..+++|+.|+++.|              +|+.|++++|.+.+.+|                          ++.+++
T Consensus       251 ---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--------------------------~~~l~~  287 (457)
T 3bz5_A          251 ---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--------------------------AEGCRK  287 (457)
T ss_dssp             ---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--------------------------CTTCTT
T ss_pred             ---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--------------------------cccccc
Confidence               01234455544432              23344444444444433                          234444


Q ss_pred             CCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccC
Q 037427          495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY  574 (829)
Q Consensus       495 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~  574 (829)
                      |+.|++++|...+.+|.   ..++|+.|++++|            ++|++|++++|++++ ++   +..+++|+.|++++
T Consensus       288 L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~---l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD---VSHNTKLKSLSCVN  348 (457)
T ss_dssp             CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC---CTTCTTCSEEECCS
T ss_pred             CCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc---cccCCcCcEEECCC
Confidence            44444444444444432   2234444444443            356666666666655 32   67788888888888


Q ss_pred             CcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccC
Q 037427          575 NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN  635 (829)
Q Consensus       575 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  635 (829)
                      |++++        ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+..
T Consensus       349 N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          349 AHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             SCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             CCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            88875        24566677888888765     24556778889999999988876543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.2e-36  Score=334.30  Aligned_cols=350  Identities=16%  Similarity=0.133  Sum_probs=200.6

Q ss_pred             hhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccc
Q 037427          334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFP  413 (829)
Q Consensus       334 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~  413 (829)
                      .+..+++|++|++++|.+.+ +|.  ++.+++|++|++++|.+++.   .+..+++|++|++++|.+++. |        
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--------  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--------  101 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--------
T ss_pred             ChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--------
Confidence            34444445555555554442 231  34445555555555554442   144444555555555544431 1        


Q ss_pred             cccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCC
Q 037427          414 SHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS  493 (829)
Q Consensus       414 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  493 (829)
                         +..+++|++|++++|.+++. +  +..+++|++|++++|++++. +  ++.+++|++|++++|+..+.+  .+..++
T Consensus       102 ---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          102 ---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             ---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             ---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC
Confidence               11234455555555554442 1  44445555555555555432 1  444455555555555333232  244445


Q ss_pred             CCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEcc
Q 037427          494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS  573 (829)
Q Consensus       494 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  573 (829)
                      +|++|++++|++++. |  +..+++|+.|++++|++++.  ....+++|++|++++|++.+ +|   +..+++|++|+++
T Consensus       171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~  241 (457)
T 3bz5_A          171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS  241 (457)
T ss_dssp             TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred             cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence            555555555555432 2  44445555555555555432  12244455555555555543 33   3444555555555


Q ss_pred             CCcCCCcchhhhhcCC-------CCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          574 YNSFSGNIPYWIERLI-------RLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       574 ~n~l~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      +|++++..+..+.++.       +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|.....+....      
T Consensus       242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~------  313 (457)
T 3bz5_A          242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD------  313 (457)
T ss_dssp             SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC------
T ss_pred             CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec------
Confidence            5555544332222222       45667777887777766  56789999999999998888875433332000      


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                             ....++|++|++++|++++. +  ++.+++|+.|++++|++
T Consensus       314 ---------------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          314 ---------------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             ---------------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred             ---------------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCC
Confidence                                                   01235899999999999974 3  89999999999999999


Q ss_pred             CCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          727 TGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      ++.        +.|+.|++++|+++|.     ..+..|..+++++|+++|.||..
T Consensus       352 ~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          352 QDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            962        5677889999999986     24557788999999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.4e-35  Score=329.11  Aligned_cols=343  Identities=25%  Similarity=0.366  Sum_probs=191.2

Q ss_pred             CccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEc
Q 037427          316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV  395 (829)
Q Consensus       316 ~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  395 (829)
                      ++++|+++++.+.. +|. +..+++|++|++++|.+.+ +|.  +..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        47 ~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             TCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             cccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            45555555555433 222 4445555555555555542 232  3455555555555555554332  444455555555


Q ss_pred             cCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEE
Q 037427          396 SKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY  475 (829)
Q Consensus       396 s~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  475 (829)
                      ++|.+                                 ++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+
T Consensus       120 ~~n~l---------------------------------~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~  162 (466)
T 1o6v_A          120 FNNQI---------------------------------TDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLS  162 (466)
T ss_dssp             CSSCC---------------------------------CCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEE
T ss_pred             CCCCC---------------------------------CCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEee
Confidence            55544                                 43322  4444455555555554443 22 244455555555


Q ss_pred             CCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCc
Q 037427          476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGP  555 (829)
Q Consensus       476 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  555 (829)
                      ++ |.+.+..  .+.++++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..| ...+++|++|++++|.+.+ 
T Consensus       163 l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-  235 (466)
T 1o6v_A          163 FG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-  235 (466)
T ss_dssp             EE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-
T ss_pred             cC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-
Confidence            53 2232221  144555555555555554432  124455555555555555543333 2244555555555555533 


Q ss_pred             CCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccC
Q 037427          556 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN  635 (829)
Q Consensus       556 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  635 (829)
                      ++  .+..+++|++|++++|++.+..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +..
T Consensus       236 ~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~  307 (466)
T 1o6v_A          236 IG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN  307 (466)
T ss_dssp             CG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             ch--hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence            22  25666777777777777765544  6667777777777777764433  6667777777777777664332  221


Q ss_pred             CCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCC
Q 037427          636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTN  715 (829)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  715 (829)
                                                                           +++|+.|++++|++++..|  +..+++
T Consensus       308 -----------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~  332 (466)
T 1o6v_A          308 -----------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTK  332 (466)
T ss_dssp             -----------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             -----------------------------------------------------CCCCCEEECcCCcCCCchh--hccCcc
Confidence                                                                 2367777777777776554  567777


Q ss_pred             CCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427          716 IRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       716 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  776 (829)
                      |+.|++++|++++.  ..+.++++|+.|++++|++++.+|  +..+++|++|++++|++++
T Consensus       333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            77777777777755  356777777777777777776665  6677777777777777776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=334.66  Aligned_cols=322  Identities=18%  Similarity=0.182  Sum_probs=254.7

Q ss_pred             CCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCC
Q 037427          390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS  469 (829)
Q Consensus       390 L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  469 (829)
                      -+.++.+++.++ .+|..+.           .++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.+++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~   80 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP-----------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF   80 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC-----------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCEEEeCCCCcC-cCCCCCC-----------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence            357888888776 4555432           3788899999998888888888888999999999988877788888888


Q ss_pred             CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEcc
Q 037427          470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLS  548 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~  548 (829)
                      +|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|+++
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence            99999999998886666678888889999999998888888888888888999998888887766655 77888888888


Q ss_pred             CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccC
Q 037427          549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ  628 (829)
Q Consensus       549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  628 (829)
                      +|++.+ ++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++.
T Consensus       161 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          161 KCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             SCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred             CCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence            888754 4444477888888888888888877777788888888888888877777776666666888888888887643


Q ss_pred             CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427          629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP  708 (829)
Q Consensus       629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  708 (829)
                      .+..+..+                                                     ++|+.|+|++|++++..+.
T Consensus       240 ~~~~~~~l-----------------------------------------------------~~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          240 PYLAVRHL-----------------------------------------------------VYLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             CHHHHTTC-----------------------------------------------------TTCCEEECCSSCCCEECTT
T ss_pred             CHHHhcCc-----------------------------------------------------cccCeeECCCCcCCccChh
Confidence            22333332                                                     3788888888888877777


Q ss_pred             ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427          709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA  777 (829)
Q Consensus       709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  777 (829)
                      .|..+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..|..+++|++|++++|++.+.
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            788888888888888888888888888888888888888888876667778888888888888888743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-34  Score=323.85  Aligned_cols=347  Identities=24%  Similarity=0.333  Sum_probs=236.0

Q ss_pred             cCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCC
Q 037427          286 FNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPN  365 (829)
Q Consensus       286 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~  365 (829)
                      ..+++++.|+++++.+...+.    .....+|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +.++++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~  113 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTN  113 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTT
T ss_pred             hHhccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCC
Confidence            346788999999998876542    3446799999999999988765  8999999999999999985 444  689999


Q ss_pred             CCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccccc
Q 037427          366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR  445 (829)
Q Consensus       366 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  445 (829)
                      |++|++++|.+++..+  +..+++|++|++++|.+.+ ++.          +..+++|++|+++ |.+.+..  .+..++
T Consensus       114 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~----------~~~l~~L~~L~l~-~~~~~~~--~~~~l~  177 (466)
T 1o6v_A          114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISA----------LSGLTSLQQLSFG-NQVTDLK--PLANLT  177 (466)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGG----------GTTCTTCSEEEEE-ESCCCCG--GGTTCT
T ss_pred             CCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Chh----------hccCCcccEeecC-CcccCch--hhccCC
Confidence            9999999999987543  7778888888888887764 221          1234566666664 3333322  255556


Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|++++.  ..+..+++|+.|+++
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  251 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence            666666666665532  225555566666666665554433  44455555555555555432  234455555555555


Q ss_pred             CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccC
Q 037427          526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV  605 (829)
Q Consensus       526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  605 (829)
                      +|.++                       +..+   +..+++|++|++++|++++..+  +..+++|++|++++|++++..
T Consensus       252 ~n~l~-----------------------~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          252 NNQIS-----------------------NLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             SSCCC-----------------------CCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred             CCccc-----------------------cchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence            55544                       3222   5566777777777777775544  666777777777777776543


Q ss_pred             CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427          606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK  685 (829)
Q Consensus       606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (829)
                      +  +..+++|+.|++++|++++..|  +..                                                  
T Consensus       304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~--------------------------------------------------  329 (466)
T 1o6v_A          304 P--ISNLKNLTYLTLYFNNISDISP--VSS--------------------------------------------------  329 (466)
T ss_dssp             G--GGGCTTCSEEECCSSCCSCCGG--GGG--------------------------------------------------
T ss_pred             h--hcCCCCCCEEECcCCcCCCchh--hcc--------------------------------------------------
Confidence            3  6677777777777777765444  222                                                  


Q ss_pred             CCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       686 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                         +++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       330 ---l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          330 ---LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ---CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ---CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence               23677788888887754  467788888888888888887776  7788888888888888886

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=333.27  Aligned_cols=347  Identities=19%  Similarity=0.135  Sum_probs=294.0

Q ss_pred             CCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccccc
Q 037427          366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR  445 (829)
Q Consensus       366 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  445 (829)
                      -+.++.+++.++.. |..+  .+.++.|++++|.+++..|..+         .++++|++|++++|.+++..|..|..++
T Consensus        13 ~~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~i~~~~~~~~~~l~   80 (477)
T 2id5_A           13 DRAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEF---------ASFPHLEELELNENIVSAVEPGAFNNLF   80 (477)
T ss_dssp             TTEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTT---------TTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHc---------cCCCCCCEEECCCCccCEeChhhhhCCc
Confidence            35788888888753 4333  3689999999999987544443         3468999999999999999899999999


Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      +|++|++++|++++..+..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence            99999999999997766778999999999999999998888999999999999999999998888999999999999999


Q ss_pred             CCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427          526 ENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE  604 (829)
Q Consensus       526 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  604 (829)
                      +|.+++..+..+ .+++|+.|++++|.+.+..+. .|..+++|+.|++++|.+.+.+|.......+|++|++++|++++.
T Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred             CCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence            999986554444 789999999999999765544 499999999999999998888888777778999999999999965


Q ss_pred             CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427          605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY  684 (829)
Q Consensus       605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (829)
                      .+..+..+++|+.|+|++|++++..+..+..+.                                               
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----------------------------------------------  272 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-----------------------------------------------  272 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-----------------------------------------------
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhccccc-----------------------------------------------
Confidence            557899999999999999999877666665544                                               


Q ss_pred             cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCC
Q 037427          685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNAL  764 (829)
Q Consensus       685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  764 (829)
                            +|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++....+.. .-....
T Consensus       273 ------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~  345 (477)
T 2id5_A          273 ------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRR  345 (477)
T ss_dssp             ------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTT
T ss_pred             ------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhh
Confidence                  8999999999999999999999999999999999999888888999999999999999998643311 111233


Q ss_pred             cEEeccCCcceeecC
Q 037427          765 VVFSVAHNNLSAAER  779 (829)
Q Consensus       765 ~~L~ls~N~l~g~ip  779 (829)
                      ..+++.++.....-|
T Consensus       346 ~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          346 WRLNFNRQQPTCATP  360 (477)
T ss_dssp             TSSCCTTCCCBEEES
T ss_pred             hccccCccCceeCCc
Confidence            345556665554444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-33  Score=305.46  Aligned_cols=287  Identities=21%  Similarity=0.206  Sum_probs=185.2

Q ss_pred             CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427          420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM  499 (829)
Q Consensus       420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  499 (829)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|+++...+..+.++++|++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            34566666666666655555566666666666666666655555566666666666666666643333456666666666


Q ss_pred             ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427          500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG  579 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  579 (829)
                      +++|++.+..+..+..+++|++|++++|.+++.  ....+++|+.|++++|.+.+      +...++|+.|++++|.+..
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV  219 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCE
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc------cCCCCcceEEECCCCeeee
Confidence            666666665555666666666666666666543  12245566666666666533      2233567777777777664


Q ss_pred             cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427          580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT  659 (829)
Q Consensus       580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (829)
                      . |..  ..++|+.|++++|.+++.  ..+..+++|++|++++|++++..|..+..++                      
T Consensus       220 ~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------  272 (390)
T 3o6n_A          220 V-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------  272 (390)
T ss_dssp             E-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS----------------------
T ss_pred             c-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc----------------------
Confidence            3 222  235677777777777642  4566677777777777777666565554433                      


Q ss_pred             eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccccccc
Q 037427          660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQ  739 (829)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  739 (829)
                                                     +|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++
T Consensus       273 -------------------------------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~  319 (390)
T 3o6n_A          273 -------------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  319 (390)
T ss_dssp             -------------------------------SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             -------------------------------cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence                                           67777777777773 4556667788888888888887 45666777888


Q ss_pred             CCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427          740 VESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA  777 (829)
Q Consensus       740 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  777 (829)
                      |+.|+|++|+++.. |  +..+++|++|++++|++++.
T Consensus       320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            88888888888743 3  56677888888888888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.8e-33  Score=302.79  Aligned_cols=310  Identities=21%  Similarity=0.238  Sum_probs=202.7

Q ss_pred             CCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCC
Q 037427           96 PFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNF  175 (829)
Q Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l  175 (829)
                      .++++++|+++++.+....+.    .+..+++|++|++++|.+++..+..|+++++|++|+|++|.+++..|  ..++++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l  116 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNV  116 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred             ccCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--HHhcCC
Confidence            467888888888887765443    26678888888888888887777788888888888888888886655  667888


Q ss_pred             CCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCccccccc
Q 037427          176 TNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNI  255 (829)
Q Consensus       176 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i  255 (829)
                      ++|++|++++|.++...+..++++++|++|++++|.+.+..|.   .+.++++|++|++++|.+++.             
T Consensus       117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~-------------  180 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHV-------------  180 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTSSCTTCCEEECCSSCCSBC-------------
T ss_pred             CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh---hccCCCCCCEEECCCCcCCcc-------------
Confidence            8888888888888866555578888888888888888776665   677788888888888877631             


Q ss_pred             CCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhh
Q 037427          256 SSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFL  335 (829)
Q Consensus       256 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l  335 (829)
                         .+..+++|+.|++++|.+.+      +...++|+.|++++|.+...+.                             
T Consensus       181 ---~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~-----------------------------  222 (390)
T 3o6n_A          181 ---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRG-----------------------------  222 (390)
T ss_dssp             ---CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEEC-----------------------------
T ss_pred             ---ccccccccceeecccccccc------cCCCCcceEEECCCCeeeeccc-----------------------------
Confidence               23566778888888877653      2233455555555555443321                             


Q ss_pred             hCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccc
Q 037427          336 YNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSH  415 (829)
Q Consensus       336 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~  415 (829)
                      ...++|+.|++++|.+++ .+ + +..+++|++|++++|.+++..+..+..+++|++|++++|++++ +|...       
T Consensus       223 ~~~~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-------  291 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTD-TA-W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------  291 (390)
T ss_dssp             CCCSSCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS-------
T ss_pred             cccccccEEECCCCCCcc-cH-H-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc-------
Confidence            112456666676666663 22 2 5567777777777777776666666666677777777766653 22111       


Q ss_pred             cccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCC
Q 037427          416 LAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY  482 (829)
Q Consensus       416 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  482 (829)
                        ..+++|++|++++|.+++ +|..+..+++|++|++++|.++.. +  +..+++|++|++++|++.
T Consensus       292 --~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          292 --QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             --SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred             --CCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence              123455555555555552 333344455555555555555532 1  344455555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-32  Score=317.91  Aligned_cols=286  Identities=21%  Similarity=0.212  Sum_probs=159.8

Q ss_pred             CcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEc
Q 037427          421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM  500 (829)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  500 (829)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            44555555555555544445555555555555555555544455555555555555555555433334455555555555


Q ss_pred             cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCc
Q 037427          501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN  580 (829)
Q Consensus       501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  580 (829)
                      ++|.+++..|..|..+++|++|++++|.+++..  ...+++|+.|++++|.+.+      +...++|+.|++++|.+...
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~  226 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVV  226 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEE
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc------ccCCchhheeeccCCccccc
Confidence            555555555555555555555555555555321  1234555555555555532      22334566666666665533


Q ss_pred             chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427          581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY  660 (829)
Q Consensus       581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (829)
                      .+. +  .++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..++.+.                       
T Consensus       227 ~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------  278 (597)
T 3oja_B          227 RGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----------------------  278 (597)
T ss_dssp             ECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----------------------
T ss_pred             ccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-----------------------
Confidence            221 1  2456666666666653  24555666666666666666655555444433                       


Q ss_pred             ecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccC
Q 037427          661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV  740 (829)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  740 (829)
                                                    +|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|
T Consensus       279 ------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          279 ------------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             ------------------------------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             ------------------------------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence                                          56666666666663 4555556666777777777766 455566666777


Q ss_pred             CeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427          741 ESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA  777 (829)
Q Consensus       741 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  777 (829)
                      +.|+|++|++++. |  +..+++|+.|++++|++++.
T Consensus       327 ~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          327 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            7777777776643 2  44556677777777776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.6e-31  Score=288.48  Aligned_cols=307  Identities=19%  Similarity=0.287  Sum_probs=195.3

Q ss_pred             hhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcc
Q 037427          360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFS  439 (829)
Q Consensus       360 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~  439 (829)
                      +..+++|++|+++++.+...  ..+..+++|++|++++|.+++ ++.          +..+++|++|++++|.+++.  .
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~-~~~----------~~~l~~L~~L~L~~n~i~~~--~  104 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITD-ISP----------LSNLVKLTNLYIGTNKITDI--S  104 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG----------GTTCTTCCEEECCSSCCCCC--G
T ss_pred             chhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCcccc-chh----------hhcCCcCCEEEccCCcccCc--h
Confidence            34678888888888887653  235556666666666666653 111          12344555555555555432  2


Q ss_pred             ccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCC
Q 037427          440 KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL  519 (829)
Q Consensus       440 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  519 (829)
                      .+..+++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L  179 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL  179 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence            344555555555555555432 22 4455555555555554332222 24455555555555555443322  4444444


Q ss_pred             CEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC
Q 037427          520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN  599 (829)
Q Consensus       520 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  599 (829)
                      +                       +|++++|.+.+ ++.  +..+++|+.|++++|.+.+..+  +..+++|++|++++|
T Consensus       180 ~-----------------------~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          180 Y-----------------------SLSLNYNQIED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             S-----------------------EEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             C-----------------------EEEccCCcccc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            4                       44554444432 221  5667778888888888776554  677788888888888


Q ss_pred             cccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccc
Q 037427          600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE  679 (829)
Q Consensus       600 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (829)
                      ++++..+  +..+++|++|++++|++++. + .+.                                             
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~---------------------------------------------  262 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISDI-N-AVK---------------------------------------------  262 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGT---------------------------------------------
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHh---------------------------------------------
Confidence            8874433  77888888888888887642 1 121                                             


Q ss_pred             ceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccc
Q 037427          680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV  759 (829)
Q Consensus       680 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~  759 (829)
                              .+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|..++.+++|+.|++++|++++..|  +.
T Consensus       263 --------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          263 --------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             --------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             --------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence                    234788888888888854  457888999999999999998888888889999999999999987666  78


Q ss_pred             cCCCCcEEeccCCcce
Q 037427          760 ELNALVVFSVAHNNLS  775 (829)
Q Consensus       760 ~l~~L~~L~ls~N~l~  775 (829)
                      .+++|++|++++|+++
T Consensus       331 ~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          331 SLSKMDSADFANQVIK  346 (347)
T ss_dssp             GCTTCSEESSSCC---
T ss_pred             hhhccceeehhhhccc
Confidence            8889999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.5e-32  Score=316.03  Aligned_cols=290  Identities=20%  Similarity=0.228  Sum_probs=255.6

Q ss_pred             CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427          420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM  499 (829)
Q Consensus       420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  499 (829)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45789999999999887777788999999999999999988888999999999999999999998888899999999999


Q ss_pred             ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC
Q 037427          500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS  578 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~  578 (829)
                      +++|.+++..+..|..+++|++|++++|.+++..|..+ .+++|++|++++|.+.+. +   +..+++|+.|++++|.++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccc
Confidence            99999997777778999999999999999998888766 889999999999999653 3   567899999999999987


Q ss_pred             CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427          579 GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT  658 (829)
Q Consensus       579 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (829)
                      +     +...++|+.|++++|.+....+ .+  .++|+.|++++|.+++.  ..+..                       
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~-----------------------  252 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLN-----------------------  252 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred             c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence            5     3345689999999999984433 32  36899999999999862  33332                       


Q ss_pred             ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427          659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN  738 (829)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  738 (829)
                                                    +++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..+..++
T Consensus       253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred             ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence                                          3489999999999999999999999999999999999996 577788899


Q ss_pred             cCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeec
Q 037427          739 QVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE  778 (829)
Q Consensus       739 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  778 (829)
                      +|+.|+|++|+++ .+|..+..+++|++|++++|++++..
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence            9999999999999 68888999999999999999998763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-33  Score=296.86  Aligned_cols=252  Identities=29%  Similarity=0.454  Sum_probs=171.2

Q ss_pred             CCcEEecccccCCC--ccCccCCCCCCCcEEECCC-CcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEE
Q 037427          446 KLARLHLDANYFTG--EIPKSLSNCSRLEGLYMSD-NNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEIL  522 (829)
Q Consensus       446 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  522 (829)
                      +++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..|..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45555555555554  4455555555555555552 44544455555555555555555555544444445455555555


Q ss_pred             eCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCC-CCCEEEccCCcc
Q 037427          523 DLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLI-RLRYLILANNNL  601 (829)
Q Consensus       523 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l  601 (829)
                      ++++|.++                       +.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus       131 ~Ls~N~l~-----------------------~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALS-----------------------GTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEE-----------------------SCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccC-----------------------CcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            44444444                       445544 66677777777777777777777777776 777777777777


Q ss_pred             cccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccce
Q 037427          602 EGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEIS  681 (829)
Q Consensus       602 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (829)
                      ++.+|..+..++ |++|++++|++++.+|..+..+.                                            
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------  221 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence            777777777776 77777777777766665555443                                            


Q ss_pred             eeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC
Q 037427          682 FSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL  761 (829)
Q Consensus       682 ~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l  761 (829)
                               +|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|||++|+++|.+|.. ..+
T Consensus       222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                     677788888888766655 777888888888888888888888888888888888888888888876 778


Q ss_pred             CCCcEEeccCCc-ceee
Q 037427          762 NALVVFSVAHNN-LSAA  777 (829)
Q Consensus       762 ~~L~~L~ls~N~-l~g~  777 (829)
                      ++|+.+++++|+ ++|.
T Consensus       291 ~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGSCGGGTCSSSEEEST
T ss_pred             cccChHHhcCCCCccCC
Confidence            888888888887 6664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.3e-31  Score=287.18  Aligned_cols=307  Identities=22%  Similarity=0.324  Sum_probs=246.9

Q ss_pred             hhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccc
Q 037427          335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPS  414 (829)
Q Consensus       335 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~  414 (829)
                      +..+++|+.|+++++.+. .+|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ +| .       
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~-------  105 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-A-------  105 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-G-------
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-H-------
Confidence            567889999999999998 5665  6789999999999999997544  8899999999999999885 32 1       


Q ss_pred             ccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCC
Q 037427          415 HLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSS  494 (829)
Q Consensus       415 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  494 (829)
                        +.++++|++|++++|.+++..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++
T Consensus       106 --~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~  178 (347)
T 4fmz_A          106 --LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD  178 (347)
T ss_dssp             --GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             --HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence              3357899999999999987544  8889999999999997665544 48999999999999999986544  889999


Q ss_pred             CCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccC
Q 037427          495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY  574 (829)
Q Consensus       495 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~  574 (829)
                      |++|++++|.+.+..+  +..+++|+.|++++|.+.+..+                          +..+++|++|++++
T Consensus       179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGN  230 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCS
T ss_pred             CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccC
Confidence            9999999999986544  7888999999999888764322                          44566777777777


Q ss_pred             CcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCC
Q 037427          575 NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNP  654 (829)
Q Consensus       575 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  654 (829)
                      |++++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|++++. | .+.                    
T Consensus       231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~--------------------  284 (347)
T 4fmz_A          231 NKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN--------------------  284 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG--------------------
T ss_pred             CccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc--------------------
Confidence            77765444  67777888888888877643  4577788888888888887643 1 122                    


Q ss_pred             CCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccc
Q 037427          655 NRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF  734 (829)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  734 (829)
                                                       .+++|+.|++++|++++..|..++.+++|++|++++|++++..|  +
T Consensus       285 ---------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~  329 (347)
T 4fmz_A          285 ---------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L  329 (347)
T ss_dssp             ---------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred             ---------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence                                             23478889999999988888889999999999999999998776  8


Q ss_pred             cccccCCeeecCCCcCc
Q 037427          735 SNLNQVESLDVSHNNLN  751 (829)
Q Consensus       735 ~~l~~L~~LdLs~N~l~  751 (829)
                      ..+++|+.||+++|+|+
T Consensus       330 ~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEESSSCC---
T ss_pred             hhhhccceeehhhhccc
Confidence            88999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.2e-30  Score=274.96  Aligned_cols=268  Identities=20%  Similarity=0.268  Sum_probs=175.1

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      .+++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            5677777777777666666777777777777777777666777777777888888877777 4454443  677777777


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcc--cCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISG--SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG  579 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  579 (829)
                      +|++.+..+..+..+++|++|++++|.+..  ..+.                        .+..+++|++|++++|+++.
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG------------------------AFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT------------------------GGGGCTTCCEEECCSSCCCS
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChh------------------------hccCCCCcCEEECCCCcccc
Confidence            777777767777777777777777777652  2222                        14455555555555555553


Q ss_pred             cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427          580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT  659 (829)
Q Consensus       580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (829)
                       +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+.                      
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------  240 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP----------------------  240 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST----------------------
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC----------------------
Confidence             232222  4666666666666655566666666666666666666655444443332                      


Q ss_pred             eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccc---
Q 037427          660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSN---  736 (829)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---  736 (829)
                                                     +|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..   
T Consensus       241 -------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          241 -------------------------------HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             -------------------------------TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             -------------------------------CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence                                           5666777777766 66666777777777777777777666666543   


Q ss_pred             ---cccCCeeecCCCcCcc--cCCcccccCCCCcEEeccCCc
Q 037427          737 ---LNQVESLDVSHNNLNG--KIPPQLVELNALVVFSVAHNN  773 (829)
Q Consensus       737 ---l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~  773 (829)
                         ...|+.|++++|++..  ..|..+..+..++.+++++|+
T Consensus       289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence               2667778888887753  455677777778888887774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.7e-34  Score=323.14  Aligned_cols=356  Identities=20%  Similarity=0.218  Sum_probs=175.2

Q ss_pred             CccEEEccCCCCCCCcC-hhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCC
Q 037427          316 QLESVSLSGSDIHATFP-KFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHL  390 (829)
Q Consensus       316 ~L~~L~Ls~~~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  390 (829)
                      ++++|++++++++.... ..+..+++|++|++++|.+.+.    ++.. +..+++|++|++++|.+++            
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~------------   70 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGD------------   70 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHH------------
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCCh------------
Confidence            56666666666654322 2255566666666666665532    2222 3445566666666655543            


Q ss_pred             CEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccc----cCccccccccCCcEEecccccCCCccCcc--
Q 037427          391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG----QLFSKKNYLRKLARLHLDANYFTGEIPKS--  464 (829)
Q Consensus       391 ~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--  464 (829)
                                  ..+..+...++..    .++|++|++++|.++.    .++..+..+++|++|++++|.+++..+..  
T Consensus        71 ------------~~~~~l~~~l~~~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  134 (461)
T 1z7x_W           71 ------------VGVHCVLQGLQTP----SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC  134 (461)
T ss_dssp             ------------HHHHHHHHTTCST----TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHhhC----CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence                        2222221111100    0134444444444442    22334444444445555444443222211  


Q ss_pred             ---CCCCCCCcEEECCCCcCCCCc----ccccCCCCCCCEEEccCCcccCCChhhhh-----CCCCCCEEeCCCCcCccc
Q 037427          465 ---LSNCSRLEGLYMSDNNLYGNI----PARLGNLSSLNDIMMASNHLQGPIPLEFC-----QLNYLEILDLSENNISGS  532 (829)
Q Consensus       465 ---l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~  532 (829)
                         ....++|++|++++|++++..    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.
T Consensus       135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence               111334555555555544322    33334445555555555554433222222     133555555555544431


Q ss_pred             ----CCCCC-CCCcccEEEccCCcccCc----CCccccCCCCCccEEEccCCcCCCc----chhhhhcCCCCCEEEccCC
Q 037427          533 ----LPSCS-SHSTIQQVHLSKNMLYGP----LKYGTFFNRSSIVTLDLSYNSFSGN----IPYWIERLIRLRYLILANN  599 (829)
Q Consensus       533 ----~~~~~-~~~~L~~L~L~~n~l~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n  599 (829)
                          ++..+ .+++|++|++++|.+.+.    +....+..+++|++|++++|++++.    ++..+..+++|++|++++|
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence                12111 334444444544444321    1111123456677777777766653    4555666677777777777


Q ss_pred             cccccCCcccC-----CCCCCCEEECcCCcCccCC----CCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccc
Q 037427          600 NLEGEVPNQLC-----GLKQLRLIDLSNNNLFGQI----PGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKE  670 (829)
Q Consensus       600 ~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (829)
                      .+++..+..+.     ..++|+.|++++|.+++..    |..+.                                    
T Consensus       295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~------------------------------------  338 (461)
T 1z7x_W          295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA------------------------------------  338 (461)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH------------------------------------
T ss_pred             CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh------------------------------------
Confidence            66543333222     2256777777777665431    11111                                    


Q ss_pred             cceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCccccc-----CCCCCEEECCCCCCCC----CccccccccccCC
Q 037427          671 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGK-----LTNIRALNFSHNNLTG----VIPVSFSNLNQVE  741 (829)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~  741 (829)
                                       .+++|++|++++|++++..+..+..     .++|++|+|++|++++    .+|..+..+++|+
T Consensus       339 -----------------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          339 -----------------QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             -----------------HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             -----------------hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence                             1235666777777666554444432     5577777777777765    5666666677777


Q ss_pred             eeecCCCcCccc
Q 037427          742 SLDVSHNNLNGK  753 (829)
Q Consensus       742 ~LdLs~N~l~~~  753 (829)
                      +|||++|++++.
T Consensus       402 ~L~l~~N~i~~~  413 (461)
T 1z7x_W          402 ELDLSNNCLGDA  413 (461)
T ss_dssp             EEECCSSSCCHH
T ss_pred             EEECCCCCCCHH
Confidence            777777777643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.7e-30  Score=276.62  Aligned_cols=267  Identities=21%  Similarity=0.261  Sum_probs=166.8

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..|..|.++++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            5566666666666555556666666666666666666555666666666666666666666 3443333  566666666


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcc--cCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISG--SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG  579 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  579 (829)
                      +|++.+..+..|..+++|++|++++|.++.  ..+..                        +..+ +|++|++++|++++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA------------------------FDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS------------------------SCSC-CCSCCBCCSSBCSS
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCccc------------------------ccCC-ccCEEECcCCCCCc
Confidence            666665555556666666666666666542  22222                        3333 55555555555553


Q ss_pred             cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427          580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT  659 (829)
Q Consensus       580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (829)
                       +|..+.  ++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+.                      
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------------------  241 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP----------------------  241 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT----------------------
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC----------------------
Confidence             333222  4666666666666655556666677777777777776655554444333                      


Q ss_pred             eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccccc--
Q 037427          660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNL--  737 (829)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--  737 (829)
                                                     +|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|...  
T Consensus       242 -------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          242 -------------------------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             -------------------------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             -------------------------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence                                           6667777777777 667777777777788888777776666666543  


Q ss_pred             ----ccCCeeecCCCcCc--ccCCcccccCCCCcEEeccCCc
Q 037427          738 ----NQVESLDVSHNNLN--GKIPPQLVELNALVVFSVAHNN  773 (829)
Q Consensus       738 ----~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~  773 (829)
                          .+|+.|++++|++.  +..|..+..++.|+.+++++|+
T Consensus       290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                56778888888776  5666777778888888887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.8e-30  Score=276.52  Aligned_cols=266  Identities=19%  Similarity=0.285  Sum_probs=208.9

Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4555666666555 3444332  466777777777665556667777777777777777776666677777777777777


Q ss_pred             CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCcccc
Q 037427          526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      +|.++ .+|.... ++|++|++++|++.+ ++...|..+++|++|++++|.++.  ..+..+..+ +|++|++++|++++
T Consensus       111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP-SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC-TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc-ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            77776 3443333 678888888888754 444458899999999999999963  677788888 99999999999984


Q ss_pred             cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                       +|..+.  ++|++|++++|++++..|..+..+.                                              
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~----------------------------------------------  217 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS----------------------------------------------  217 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT----------------------------------------------
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCC----------------------------------------------
Confidence             666554  7999999999999987776666544                                              


Q ss_pred             ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC--
Q 037427          684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL--  761 (829)
Q Consensus       684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l--  761 (829)
                             +|+.|++++|++++..|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+...  
T Consensus       218 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          218 -------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             -------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             -------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence                   8899999999999888889999999999999999999 788899999999999999999998777766553  


Q ss_pred             ----CCCcEEeccCCcce
Q 037427          762 ----NALVVFSVAHNNLS  775 (829)
Q Consensus       762 ----~~L~~L~ls~N~l~  775 (829)
                          ..|+.+++++|++.
T Consensus       290 ~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CSSSCCBSEEECCSSSSC
T ss_pred             ccccccccceEeecCccc
Confidence                67899999999987

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6e-30  Score=273.75  Aligned_cols=268  Identities=18%  Similarity=0.281  Sum_probs=208.9

Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      +++.++++++.++ .+|..+.  +.|++|++++|++++..+..+.++++|++|++++|++++..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4555555555555 3444332  466667777776665555566667777777777777766666667777777777777


Q ss_pred             CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCcccc
Q 037427          526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      +|.++ .+|.... ++|++|++++|.+.+ ++...+..+++|++|++++|.+..  ..+..+.++++|++|++++|.++ 
T Consensus       109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP-KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCS-BCCSSCC-TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCC-ccChhhc-ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            77776 3443332 678888888888754 444448899999999999999964  67788999999999999999998 


Q ss_pred             cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                      .+|..+.  ++|++|++++|++++..|..+..+.                                              
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------  216 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN----------------------------------------------  216 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT----------------------------------------------
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC----------------------------------------------
Confidence            5665553  8999999999999987776665544                                              


Q ss_pred             ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccccc---
Q 037427          684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE---  760 (829)
Q Consensus       684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~---  760 (829)
                             +|+.|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..   
T Consensus       217 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          217 -------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             -------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             -------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence                   8999999999999888889999999999999999999 78889999999999999999999877766653   


Q ss_pred             ---CCCCcEEeccCCccee
Q 037427          761 ---LNALVVFSVAHNNLSA  776 (829)
Q Consensus       761 ---l~~L~~L~ls~N~l~g  776 (829)
                         ...++.+++++|++..
T Consensus       289 ~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCG
T ss_pred             ccccccccceEeecCcccc
Confidence               3788999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.7e-33  Score=314.91  Aligned_cols=355  Identities=17%  Similarity=0.115  Sum_probs=217.5

Q ss_pred             cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCC----CCCEEEccCCcCcC----CCCCCCCCCCCCCEEEccCCcccc
Q 037427          331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP----NLSTLVLRNNSLSG----PFQTPIQPHWHLDALHVSKNFFQG  402 (829)
Q Consensus       331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~  402 (829)
                      ++..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.++.    .++..+..+++|++|++++|.+++
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            4566777888899999988887655555555566    68888888888774    335566777788888888887765


Q ss_pred             cCchhhhhccccccccCCCcccEEEcccccccccC----ccccccccCCcEEecccccCCCccCccCC-----CCCCCcE
Q 037427          403 NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL----FSKKNYLRKLARLHLDANYFTGEIPKSLS-----NCSRLEG  473 (829)
Q Consensus       403 ~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~  473 (829)
                      ..+..+...+.    ...++|++|++++|.+++..    +..+..+++|++|++++|.+++..+..+.     ..++|++
T Consensus       128 ~~~~~l~~~l~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~  203 (461)
T 1z7x_W          128 AGLQLLCEGLL----DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA  203 (461)
T ss_dssp             HHHHHHHHHHT----STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE
T ss_pred             HHHHHHHHHHh----cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceE
Confidence            44444333211    12346777777777766533    33444456666666666665543222222     1345666


Q ss_pred             EECCCCcCCCC----cccccCCCCCCCEEEccCCcccCCChh-----hhhCCCCCCEEeCCCCcCcccCCCCCCCCcccE
Q 037427          474 LYMSDNNLYGN----IPARLGNLSSLNDIMMASNHLQGPIPL-----EFCQLNYLEILDLSENNISGSLPSCSSHSTIQQ  544 (829)
Q Consensus       474 L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  544 (829)
                      |++++|.+++.    ++..+..+++|++|++++|.+.+....     .+..+++|++|++++|.++....          
T Consensus       204 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----------  273 (461)
T 1z7x_W          204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC----------  273 (461)
T ss_dssp             EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----------
T ss_pred             EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH----------
Confidence            66666665542    344444555555555555555432211     11134455555555554432100          


Q ss_pred             EEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhc-----CCCCCEEEccCCccccc----CCcccCCCCCC
Q 037427          545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-----LIRLRYLILANNNLEGE----VPNQLCGLKQL  615 (829)
Q Consensus       545 L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L  615 (829)
                               ..++.. +..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|
T Consensus       274 ---------~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          274 ---------GDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             ---------HHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             ---------HHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence                     002332 556778888888888876655544443     26888888888888754    45666777888


Q ss_pred             CEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceE
Q 037427          616 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV  695 (829)
Q Consensus       616 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  695 (829)
                      ++|++++|++++..+..+...-                                                ....++|+.|
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l------------------------------------------------~~~~~~L~~L  375 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGL------------------------------------------------GQPGSVLRVL  375 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHH------------------------------------------------TSTTCCCCEE
T ss_pred             cEEEccCCccccccHHHHHHHH------------------------------------------------cCCCCceEEE
Confidence            8888888888654333222100                                                0013478899


Q ss_pred             EcCCCcCCC----CCCcccccCCCCCEEECCCCCCCCCcccccc-----ccccCCeeecCCCcCcccCCcc
Q 037427          696 DLSCNKLTG----EIPPQIGKLTNIRALNFSHNNLTGVIPVSFS-----NLNQVESLDVSHNNLNGKIPPQ  757 (829)
Q Consensus       696 ~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~LdLs~N~l~~~ip~~  757 (829)
                      ++++|++++    .+|..+..+++|++|++++|++++.....+.     ...+|+.|++.++.+....++.
T Consensus       376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            999999986    7888899999999999999999865322222     1245777777777666444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.4e-30  Score=275.50  Aligned_cols=273  Identities=16%  Similarity=0.229  Sum_probs=156.9

Q ss_pred             CChHHHHHHHHHhhhcCC-CCCCCCCCCCC-CCCCCCCccccceEecC--------CCCcEEEEEcCCCccccccccccc
Q 037427           20 GCLEQERSALLRLKHDFF-NDPFNLENWVD-DENHSDCCKWEGVECNT--------STGRVKALYLSSKRQFLYSTAGQL   89 (829)
Q Consensus        20 ~~~~~~~~~ll~~k~~~~-~~~~~l~~w~~-~~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~~   89 (829)
                      ++..+|++||++||+++. +....+.+|.. .....++|.|.|+.|+.        ...+|+.|+|++            
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~------------   90 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS------------   90 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES------------
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC------------
Confidence            456789999999999885 44344677830 01356899999999963        123455555554            


Q ss_pred             CcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCcc
Q 037427           90 NASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVK  169 (829)
Q Consensus        90 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~  169 (829)
                                        |.+... |..    +.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|  
T Consensus        91 ------------------n~l~~l-p~~----l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp--  143 (328)
T 4fcg_A           91 ------------------VPLPQF-PDQ----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP--  143 (328)
T ss_dssp             ------------------SCCSSC-CSC----GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC--
T ss_pred             ------------------CCchhc-Chh----hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc--
Confidence                              444422 221    344555555555555554 44444555555555555555554 334  


Q ss_pred             ccccCCCCCCEEecCCCCCCchhhHhhh---------cCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCc
Q 037427          170 ETLDNFTNLEDLTLDYSSLHISILKSIA---------AFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR  240 (829)
Q Consensus       170 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~  240 (829)
                      ..++++++|++|++++|.+.+.+|..+.         ++++|++|++++|.++ .+|.   .++++++|++|++++|.++
T Consensus       144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~---~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA---SIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG---GGGGCTTCCEEEEESSCCC
T ss_pred             HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH---hhcCCCCCCEEEccCCCCC
Confidence            3455555555555555544444444433         2666666666666665 4444   4556666666666666665


Q ss_pred             cccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEE
Q 037427          241 GTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV  320 (829)
Q Consensus       241 g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L  320 (829)
                      + +|             ..+..+++|++|++++|.+.+.++. .+..++                          +|++|
T Consensus       220 ~-l~-------------~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~--------------------------~L~~L  258 (328)
T 4fcg_A          220 A-LG-------------PAIHHLPKLEELDLRGCTALRNYPP-IFGGRA--------------------------PLKRL  258 (328)
T ss_dssp             C-CC-------------GGGGGCTTCCEEECTTCTTCCBCCC-CTTCCC--------------------------CCCEE
T ss_pred             c-Cc-------------hhhccCCCCCEEECcCCcchhhhHH-HhcCCC--------------------------CCCEE
Confidence            3 22             1125566666666666665544432 122222                          33444


Q ss_pred             EccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCc
Q 037427          321 SLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS  377 (829)
Q Consensus       321 ~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  377 (829)
                      ++++|.+.+.+|.++..+++|++|++++|.+.+.+|.+ ++++++|+.+++..+.+.
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGSC
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHHH
Confidence            44444445556666777777777777777777777776 567777777777766544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=5.8e-28  Score=268.98  Aligned_cols=248  Identities=24%  Similarity=0.305  Sum_probs=178.3

Q ss_pred             CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCC
Q 037427          447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE  526 (829)
Q Consensus       447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  526 (829)
                      .+.++.++..++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|++.+..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            445666666666 4555443  5677777777777766666777777777777777777766666777777777777777


Q ss_pred             CcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC-cccccC
Q 037427          527 NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN-NLEGEV  605 (829)
Q Consensus       527 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~  605 (829)
                      |++++..                        ...|..+++|++|++++|++....+..+..+++|++|++++| .+....
T Consensus       122 n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIP------------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCC------------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeC------------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            7666322                        222556666666777777666555566667777777777764 344333


Q ss_pred             CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427          606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK  685 (829)
Q Consensus       606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (829)
                      +..|.++++|++|++++|+++ .+|. +.                                                   
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~---------------------------------------------------  204 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LT---------------------------------------------------  204 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS-SCCC-CT---------------------------------------------------
T ss_pred             cchhhcccccCeecCCCCcCc-cccc-cC---------------------------------------------------
Confidence            446777778888888888776 2332 11                                                   


Q ss_pred             CCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCc
Q 037427          686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV  765 (829)
Q Consensus       686 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  765 (829)
                        .+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+
T Consensus       205 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          205 --PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             --TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             --CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence              233788888888888888888888889999999999999988888888889999999999999877777788888999


Q ss_pred             EEeccCCccee
Q 037427          766 VFSVAHNNLSA  776 (829)
Q Consensus       766 ~L~ls~N~l~g  776 (829)
                      .|++++|++..
T Consensus       283 ~L~L~~Np~~C  293 (440)
T 3zyj_A          283 RIHLHHNPWNC  293 (440)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEcCCCCccC
Confidence            99999888763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.1e-28  Score=258.76  Aligned_cols=258  Identities=17%  Similarity=0.199  Sum_probs=148.4

Q ss_pred             CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCC--ChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEc
Q 037427          470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP--IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL  547 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L  547 (829)
                      +|++|++++|+++...+..+.++++|++|++++|+++..  .+..+..+++|++|++++|.+.+..+....+++|++|++
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence            444444444444422222344444444444444444321  133344445555555555544421111113444444444


Q ss_pred             cCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc-cCCcccCCCCCCCEEECcCCcCc
Q 037427          548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG-EVPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       548 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      ++|++.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus       109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  188 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  188 (306)
T ss_dssp             TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence            44444333322236667777777777777777777777777777777777777765 46677777777777777777777


Q ss_pred             cCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC
Q 037427          627 GQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI  706 (829)
Q Consensus       627 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i  706 (829)
                      +..|..+..+.                                                     +|+.|++++|++++..
T Consensus       189 ~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          189 QLSPTAFNSLS-----------------------------------------------------SLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             EECTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSBCC
T ss_pred             CcCHHHhcCCC-----------------------------------------------------CCCEEECCCCccCccC
Confidence            65555554433                                                     6677777777777666


Q ss_pred             CcccccCCCCCEEECCCCCCCCCccccccccc-cCCeeecCCCcCcccCC--cccccCCCCcEEeccCCcceeecCC
Q 037427          707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN-QVESLDVSHNNLNGKIP--PQLVELNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       707 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~N~l~g~ip~  780 (829)
                      +..+..+++|++|+|++|++++..|..+..++ +|+.|+|++|++++..+  ....-+...+.+.+..+++.+..|.
T Consensus       216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            66677777777777777777777777777763 77777777777765322  1112222334445555666665554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=266.31  Aligned_cols=281  Identities=17%  Similarity=0.155  Sum_probs=182.6

Q ss_pred             CcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEc
Q 037427          421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM  500 (829)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  500 (829)
                      +.....+.+++.++.. |..+  .++|++|++++|.+++..+..+.++++|++|++++|++++..|..+.++++|++|++
T Consensus        31 ~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3344456666666533 3322  246777777777777555556777777777777777777666667777777777777


Q ss_pred             cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCC-CCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC
Q 037427          501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS  578 (829)
Q Consensus       501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~  578 (829)
                      ++|++++..+..+..+++|++|++++|++++..+ ..+ .+++|++|++++|...+.++...+..+++|++|++++|+++
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            7777776655567777777788887777774333 233 66777777777774334444444777788888888888887


Q ss_pred             CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427          579 GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT  658 (829)
Q Consensus       579 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (829)
                      +..|..+..+++|++|++++|++....+..+..+++|+.|++++|++++..+..+....                     
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~---------------------  246 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE---------------------  246 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc---------------------
Confidence            77777788888888888888877643333344577788888888887754443322111                     


Q ss_pred             ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC----CCCcccccCCCCCEEECCCCCCCCCcccc-
Q 037427          659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG----EIPPQIGKLTNIRALNFSHNNLTGVIPVS-  733 (829)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-  733 (829)
                                                   ....++.++++++.+++    .+|..+..+++|++|+|++|+++ .+|.. 
T Consensus       247 -----------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~  296 (353)
T 2z80_A          247 -----------------------------TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI  296 (353)
T ss_dssp             -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             -----------------------------ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence                                         11245556666666554    35666777777777777777777 34444 


Q ss_pred             ccccccCCeeecCCCcCcccCC
Q 037427          734 FSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       734 l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                      |+.+++|++|+|++|++++..|
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCC
Confidence            4677777777777777776544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7.9e-28  Score=254.41  Aligned_cols=249  Identities=21%  Similarity=0.283  Sum_probs=218.1

Q ss_pred             cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCccc--CCC-CCCCCcccEEEcc
Q 037427          472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGS--LPS-CSSHSTIQQVHLS  548 (829)
Q Consensus       472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~-~~~~~~L~~L~L~  548 (829)
                      +.++.+++.++ .+|..+.  ++|++|++++|+++...+..|..+++|++|++++|.++..  .+. ...+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            57888888887 5665443  6899999999999976666789999999999999999743  133 2378999999999


Q ss_pred             CCcccCcCCccccCCCCCccEEEccCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427          549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG  627 (829)
Q Consensus       549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  627 (829)
                      +|.+. .++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        87 ~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            99996 45655 8899999999999999997665 678999999999999999998889999999999999999999986


Q ss_pred             -CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC
Q 037427          628 -QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI  706 (829)
Q Consensus       628 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i  706 (829)
                       .+|..+..+.                                                     +|++|++++|++++..
T Consensus       165 ~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~  191 (306)
T 2z66_A          165 NFLPDIFTELR-----------------------------------------------------NLTFLDLSQCQLEQLS  191 (306)
T ss_dssp             GEECSCCTTCT-----------------------------------------------------TCCEEECTTSCCCEEC
T ss_pred             ccchhHHhhCc-----------------------------------------------------CCCEEECCCCCcCCcC
Confidence             4666555543                                                     8999999999999888


Q ss_pred             CcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCC-CCcEEeccCCcceeec
Q 037427          707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN-ALVVFSVAHNNLSAAE  778 (829)
Q Consensus       707 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~i  778 (829)
                      |..+..+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|++|++++|++++..
T Consensus       192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            99999999999999999999988888999999999999999999999999999984 9999999999999753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.7e-28  Score=265.05  Aligned_cols=279  Identities=17%  Similarity=0.164  Sum_probs=235.5

Q ss_pred             cccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEE
Q 037427          443 YLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEIL  522 (829)
Q Consensus       443 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  522 (829)
                      .++.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3556667899999998 5676554  589999999999997767789999999999999999998888899999999999


Q ss_pred             eCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCc-cccCCCCCccEEEccCC-cCCCcchhhhhcCCCCCEEEccCC
Q 037427          523 DLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKY-GTFFNRSSIVTLDLSYN-SFSGNIPYWIERLIRLRYLILANN  599 (829)
Q Consensus       523 ~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n  599 (829)
                      ++++|++++..+..+ .+++|++|++++|++. .++. ..+..+++|++|++++| .+.+..+..+.++++|++|++++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            999999996544434 7899999999999996 4555 55899999999999999 477667788999999999999999


Q ss_pred             cccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccc
Q 037427          600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE  679 (829)
Q Consensus       600 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (829)
                      ++++..|..+..+++|++|++++|+++. +|..+.                                             
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~---------------------------------------------  218 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV---------------------------------------------  218 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHH---------------------------------------------
T ss_pred             CcCccCHHHHhccccCCeecCCCCcccc-chhhhh---------------------------------------------
Confidence            9998889999999999999999999853 222111                                             


Q ss_pred             ceeeecCCCCCCcceEEcCCCcCCCCCCcccc---cCCCCCEEECCCCCCCC----CccccccccccCCeeecCCCcCcc
Q 037427          680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG---KLTNIRALNFSHNNLTG----VIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       680 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                             ..+++|+.|++++|++++..+..+.   ....++.++|+++.+++    .+|+.+..+++|+.|||++|+++ 
T Consensus       219 -------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          219 -------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             -------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             -------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence                   1134899999999999987665543   46778999999999987    37888999999999999999999 


Q ss_pred             cCCcc-cccCCCCcEEeccCCcceeecC
Q 037427          753 KIPPQ-LVELNALVVFSVAHNNLSAAER  779 (829)
Q Consensus       753 ~ip~~-l~~l~~L~~L~ls~N~l~g~ip  779 (829)
                      .+|.. +..+++|++|++++|++++..|
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            56665 5899999999999999998876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.8e-30  Score=296.87  Aligned_cols=460  Identities=15%  Similarity=0.135  Sum_probs=215.6

Q ss_pred             CCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCC---CcCCCc-------cccc-c
Q 037427           54 DCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIA---GFVENG-------GLER-L  122 (829)
Q Consensus        54 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~-------~~~~-l  122 (829)
                      -|++|.++.+..  .  ..+.+.+...       ......+..+++|++|+++++...   +.++..       .+.. .
T Consensus        40 vck~W~~~~~~~--~--~~l~~~~~~~-------~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~  108 (592)
T 3ogk_B           40 VCRRWFKIDSET--R--EHVTMALCYT-------ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS  108 (592)
T ss_dssp             SCHHHHHHHHHH--C--CEEEESCGGG-------SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH
T ss_pred             HhHHHHHhhhcc--c--cEEEEeeccc-------cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHH
Confidence            456899985432  1  2233332210       112345677889999999876431   122211       0000 1


Q ss_pred             CCCCCCCEEECCCCCCCccchhhhcCC--CCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCch----hhHhh
Q 037427          123 SGLSKLKLLNLGRNLFNNSIFSSLAGL--SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS----ILKSI  196 (829)
Q Consensus       123 ~~l~~L~~L~Ls~n~l~~~~~~~l~~L--~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l  196 (829)
                      ..+++|++|+|++|.+++..+..++..  .+|++|+|++|.-...........++++|++|+|++|.+++.    ++..+
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            156677777777776666555555553  337777776665110000112233566666666666665443    33444


Q ss_pred             hcCCCCCEEEcccccCcc----ccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcc
Q 037427          197 AAFTSLKRLSIQNGRVDG----ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLS  272 (829)
Q Consensus       197 ~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls  272 (829)
                      ..+++|++|++++|.+++    .++.   .+.++++|++|++++|.+.+ +|             ..+..+++|++|+++
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~~~-l~-------------~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLET---IARNCRSLVSVKVGDFEILE-LV-------------GFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHH---HHHHCTTCCEEECSSCBGGG-GH-------------HHHHHCTTCCEEEEC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHH---HHhhCCCCcEEeccCccHHH-HH-------------HHHhhhhHHHhhccc
Confidence            556666666666666542    1111   23345566666666555543 22             111445555555554


Q ss_pred             cccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCC
Q 037427          273 YNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLK  352 (829)
Q Consensus       273 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~  352 (829)
                      .....  .+.                      ...........+|+.++++++. ...+|..+..+++|++|++++|.+.
T Consensus       252 ~~~~~--~~~----------------------~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          252 SLNED--IGM----------------------PEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             BCCCC--TTC----------------------TTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred             ccccc--cch----------------------HHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCC
Confidence            32111  000                      0001111222355556665532 2445666667777777777777765


Q ss_pred             CCCchHHhhcCCCCCEEEccCCcCcC-CCCCCCCCCCCCCEEEccC-----------CcccccCchhhhhccccccccCC
Q 037427          353 GEFPNWLLKNNPNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSK-----------NFFQGNIPLEIGVYFPSHLAMGC  420 (829)
Q Consensus       353 ~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~-----------n~l~~~ip~~~~~~l~~~~~~~~  420 (829)
                      +.....++..+++|++|+++ +.+.+ .++.....+++|++|++++           +.+++.....+.        .+|
T Consensus       307 ~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~--------~~~  377 (592)
T 3ogk_B          307 TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA--------QGC  377 (592)
T ss_dssp             HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH--------HHC
T ss_pred             HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH--------hhC
Confidence            44443345667777777776 33321 1111122345566666652           333322111111        124


Q ss_pred             CcccEEEcccccccccCcccccc-ccCCcEEecc----cccCCCc-----cCccCCCCCCCcEEECCCCc--CCCCcccc
Q 037427          421 FNLEYLVLSENSLHGQLFSKKNY-LRKLARLHLD----ANYFTGE-----IPKSLSNCSRLEGLYMSDNN--LYGNIPAR  488 (829)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~p~~  488 (829)
                      ++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++|++|++++|.  +++..+..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            45566666555555544444433 5555555554    3344431     12223344555555554322  33322222


Q ss_pred             cC-CCCCCCEEEccCCcccCC-ChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCC
Q 037427          489 LG-NLSSLNDIMMASNHLQGP-IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS  566 (829)
Q Consensus       489 l~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~  566 (829)
                      +. .+++|++|++++|++++. ++..+..+++|++|++++|.++                       +......+..+++
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~  514 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS-----------------------ERAIAAAVTKLPS  514 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB-----------------------HHHHHHHHHHCSS
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc-----------------------HHHHHHHHHhcCc
Confidence            22 244455555555544431 2222334444444444444433                       2211111334566


Q ss_pred             ccEEEccCCcCCCcchhhhh-cCCCCCEEEccC
Q 037427          567 IVTLDLSYNSFSGNIPYWIE-RLIRLRYLILAN  598 (829)
Q Consensus       567 L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~  598 (829)
                      |++|++++|++++.....+. .++.+....+..
T Consensus       515 L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          515 LRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             CCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             cCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            66666666666554333332 345555554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.8e-30  Score=296.85  Aligned_cols=398  Identities=13%  Similarity=0.057  Sum_probs=243.1

Q ss_pred             cCccEEEccCCCCCCCcChhhhC-CC-CcCEEEcCCCC-CCCCCchHHhhcCCCCCEEEccCCcCcCCC----CCCCCCC
Q 037427          315 FQLESVSLSGSDIHATFPKFLYN-QH-DLELVDFSDSN-LKGEFPNWLLKNNPNLSTLVLRNNSLSGPF----QTPIQPH  387 (829)
Q Consensus       315 ~~L~~L~Ls~~~l~~~~p~~l~~-~~-~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l  387 (829)
                      ++|++|+|++|.+++..+.++.. ++ +|++|++++|. +.......+...+++|++|+|++|.+++..    +.....+
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            35666666666555555555544 23 37777777665 211111122345677777777777665431    1122345


Q ss_pred             CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCC---CccCcc
Q 037427          388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT---GEIPKS  464 (829)
Q Consensus       388 ~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~  464 (829)
                      ++|++|+++.|.+++.-+..+...     +..+++|++|++++|.+.+ ++..+..+++|++|+++.....   +..+..
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETI-----ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHH-----HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             CCccEEEeeccCCCccCHHHHHHH-----HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            677777777777653222222211     1135677888888777765 4566777778888887753322   233345


Q ss_pred             CCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCc-ccCCCCC-CCCc
Q 037427          465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNIS-GSLPSCS-SHST  541 (829)
Q Consensus       465 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~~~-~~~~  541 (829)
                      +..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+. +.++... .+++
T Consensus       266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred             hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence            66777788888777543 3566667777788888888877654333 335677888888887 3333 2222222 4667


Q ss_pred             ccEEEccC-----------CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhc-CCCCCEEEcc----CCccccc-
Q 037427          542 IQQVHLSK-----------NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-LIRLRYLILA----NNNLEGE-  604 (829)
Q Consensus       542 L~~L~L~~-----------n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-  604 (829)
                      |++|++++           +.+++.........+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++. 
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p  423 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP  423 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence            78888873           34432211111345788888888888888777777765 8888888886    5666643 


Q ss_pred             ----CCcccCCCCCCCEEECcCCc--CccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427          605 ----VPNQLCGLKQLRLIDLSNNN--LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK  678 (829)
Q Consensus       605 ----~~~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (829)
                          ++..+.++++|+.|++++|.  +++..+..+.                                            
T Consensus       424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------------------------------------------  459 (592)
T 3ogk_B          424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--------------------------------------------  459 (592)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--------------------------------------------
Confidence                33345668888888887543  4332221111                                            


Q ss_pred             cceeeecCCCCCCcceEEcCCCcCCC-CCCcccccCCCCCEEECCCCCCCCC-ccccccccccCCeeecCCCcCcccCCc
Q 037427          679 EISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNGKIPP  756 (829)
Q Consensus       679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~ip~  756 (829)
                              ..+++|+.|++++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|++++....
T Consensus       460 --------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~  531 (592)
T 3ogk_B          460 --------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD  531 (592)
T ss_dssp             --------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred             --------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence                    123478889999988876 3455567888899999999988755 344456788899999999998865433


Q ss_pred             cc-ccCCCCcEEeccCC
Q 037427          757 QL-VELNALVVFSVAHN  772 (829)
Q Consensus       757 ~l-~~l~~L~~L~ls~N  772 (829)
                      .+ ..++.+.+..+..+
T Consensus       532 ~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          532 LMQMARPYWNIELIPSR  548 (592)
T ss_dssp             GGGGCCTTEEEEEECCC
T ss_pred             HHHHhCCCcEEEEecCc
Confidence            33 34566655555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.7e-27  Score=250.90  Aligned_cols=234  Identities=18%  Similarity=0.222  Sum_probs=158.7

Q ss_pred             ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427          444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD  523 (829)
Q Consensus       444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  523 (829)
                      .++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467889999999988 67777888889999999999888 78888888889999999998888 6788888888888888


Q ss_pred             CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427          524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      +++|++.+.+|..+..     .         .++. .+.++++|++|++++|+++ .+|..+..+++|++|++++|+++ 
T Consensus       157 L~~n~~~~~~p~~~~~-----~---------~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS-----T---------DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE-----E---------C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred             CCCCCCccccChhHhh-----c---------cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence            8888877776654310     0         0111 1455677777777777776 56666777777777777777776 


Q ss_pred             cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                      .+|..+..+++|++|++++|++.+.+|..++.+.                                              
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~----------------------------------------------  253 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA----------------------------------------------  253 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC----------------------------------------------
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCC----------------------------------------------
Confidence            3455566666666666666666655555444332                                              


Q ss_pred             ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcC
Q 037427          684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL  750 (829)
Q Consensus       684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l  750 (829)
                             +|+.|++++|.+.+.+|..++.+++|++|+|++|++.+.+|+.++++++|+.+++..|.+
T Consensus       254 -------~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          254 -------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             -------CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             -------CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence                   455555555555555555555555555555555555555555555555555555554444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=1.1e-28  Score=261.97  Aligned_cols=269  Identities=20%  Similarity=0.239  Sum_probs=190.2

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      +++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            45556666666554444444455666666666666665555566666666666666666654333  5566666666666


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  581 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  581 (829)
                      +|++++..     ..++|++|++++|+++                       +..+    ..+++|++|++++|++++..
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~-----------------------~~~~----~~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNIS-----------------------RVSC----SRGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCS-----------------------EEEE----CCCSSCEEEECCSSCCCSGG
T ss_pred             CCcccccc-----CCCCcCEEECCCCccC-----------------------CcCc----cccCCCCEEECCCCCCCCcc
Confidence            66655321     2245555555555544                       3221    23466888888888888777


Q ss_pred             hhhhhcCCCCCEEEccCCcccccCCccc-CCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427          582 PYWIERLIRLRYLILANNNLEGEVPNQL-CGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY  660 (829)
Q Consensus       582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (829)
                      +..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++. |..                            
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~----------------------------  187 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ----------------------------  187 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC----------------------------
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc----------------------------
Confidence            7777778888888888888887666665 3678888888888888643 110                            


Q ss_pred             ecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccC
Q 037427          661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV  740 (829)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  740 (829)
                                                ..+++|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|
T Consensus       188 --------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          188 --------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             --------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             --------------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence                                      013478899999999995 5556999999999999999999 578889999999


Q ss_pred             CeeecCCCcCc-ccCCcccccCCCCcEEeccC-CcceeecCCC
Q 037427          741 ESLDVSHNNLN-GKIPPQLVELNALVVFSVAH-NNLSAAERNP  781 (829)
Q Consensus       741 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls~-N~l~g~ip~~  781 (829)
                      +.|++++|+++ +.+|..+..++.|+.+++++ +.++|..|..
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            99999999999 78889999999999999994 4788877754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.3e-26  Score=256.94  Aligned_cols=247  Identities=21%  Similarity=0.258  Sum_probs=153.5

Q ss_pred             CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCC
Q 037427          447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE  526 (829)
Q Consensus       447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  526 (829)
                      ...++.++..++ .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456777777777 4565443  5788888888888877777778888888888888888777777777777777777777


Q ss_pred             CcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC-cccccC
Q 037427          527 NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN-NLEGEV  605 (829)
Q Consensus       527 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~  605 (829)
                      |++++..+..                        |..+++|++|++++|++.+..+..+..+++|++|++++| .+....
T Consensus       133 n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTVIPSGA------------------------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSBCCTTT------------------------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCccChhh------------------------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            7776443332                        444555555555555555444445555555555555552 333222


Q ss_pred             CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427          606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK  685 (829)
Q Consensus       606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (829)
                      +..+.++++|++|++++|++++. |. +.                                                   
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~~-~~---------------------------------------------------  215 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-PN-LT---------------------------------------------------  215 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-CC-CT---------------------------------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-cc-cc---------------------------------------------------
Confidence            33455566666666666655432 21 11                                                   


Q ss_pred             CCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCc
Q 037427          686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV  765 (829)
Q Consensus       686 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  765 (829)
                        .+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+
T Consensus       216 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          216 --PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             --TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             --ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence              122566666666666666666666666666666666666666666666666666666666666655555566666666


Q ss_pred             EEeccCCcce
Q 037427          766 VFSVAHNNLS  775 (829)
Q Consensus       766 ~L~ls~N~l~  775 (829)
                      .|++++|++.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            6666666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.3e-27  Score=243.37  Aligned_cols=235  Identities=20%  Similarity=0.212  Sum_probs=130.7

Q ss_pred             CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCc-CcccCCCCCCCCcccEEEc
Q 037427          469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN-ISGSLPSCSSHSTIQQVHL  547 (829)
Q Consensus       469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L  547 (829)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|. +....|             
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-------------   98 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-------------   98 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-------------
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-------------
Confidence            355555555555554444445555555555555555554444555555555555555554 332212             


Q ss_pred             cCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427          548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG  627 (829)
Q Consensus       548 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  627 (829)
                                 ..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus        99 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           99 -----------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             -----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             -----------HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence                       124445555555555555555555555555566666666666554444455556666666666666554


Q ss_pred             CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCC
Q 037427          628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP  707 (829)
Q Consensus       628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip  707 (829)
                      ..+..+..+.                                                     +|+.|++++|++++..|
T Consensus       168 ~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          168 VPERAFRGLH-----------------------------------------------------SLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             ECTTTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred             cCHHHhcCcc-----------------------------------------------------ccCEEECCCCcccccCH
Confidence            3333333322                                                     56666666666666666


Q ss_pred             cccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       708 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+.+..|..
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            66677777777777777777666666777777777777777776433321 11123444556666777666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-26  Score=241.97  Aligned_cols=228  Identities=21%  Similarity=0.227  Sum_probs=185.7

Q ss_pred             cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427          472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM  551 (829)
Q Consensus       472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  551 (829)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++                    
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------   70 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--------------------   70 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--------------------
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce--------------------
Confidence            45666666665 344332  3466666666666665555556666666666666665543                    


Q ss_pred             ccCcCCccccCCCCCccEEEccCCc-CCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427          552 LYGPLKYGTFFNRSSIVTLDLSYNS-FSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP  630 (829)
Q Consensus       552 l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  630 (829)
                         ..+.. |..+++|++|++++|+ +....|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        71 ---~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           71 ---IDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             ---ECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ---eCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence               22333 7888999999999997 887778899999999999999999998888999999999999999999987666


Q ss_pred             CCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCccc
Q 037427          631 GCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI  710 (829)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l  710 (829)
                      ..++.+.                                                     +|++|++++|++++..+..+
T Consensus       147 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A          147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred             hHhccCC-----------------------------------------------------CccEEECCCCcccccCHHHh
Confidence            5555443                                                     89999999999997777789


Q ss_pred             ccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecC
Q 037427          711 GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAER  779 (829)
Q Consensus       711 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  779 (829)
                      ..+++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            999999999999999999999999999999999999999998777889999999999999999987654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-28  Score=256.35  Aligned_cols=269  Identities=20%  Similarity=0.153  Sum_probs=209.9

Q ss_pred             CCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCC
Q 037427          389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNC  468 (829)
Q Consensus       389 ~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  468 (829)
                      +++..+++.+.+... +..+        +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+
T Consensus        11 ~l~i~~ls~~~l~~~-~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l   79 (317)
T 3o53_A           11 RYKIEKVTDSSLKQA-LASL--------RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL   79 (317)
T ss_dssp             EEEEESCCTTTHHHH-HHHH--------HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC
T ss_pred             ceeEeeccccchhhh-HHHH--------hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc
Confidence            455566666665422 2121        2245789999999999999888899999999999999999986554  8899


Q ss_pred             CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEcc
Q 037427          469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS  548 (829)
Q Consensus       469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~  548 (829)
                      ++|++|++++|++++..     ..++|++|++++|++++..+.   .+++|++|++++|++++..+              
T Consensus        80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~--------------  137 (317)
T 3o53_A           80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--------------  137 (317)
T ss_dssp             TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG--------------
T ss_pred             CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc--------------
Confidence            99999999999998432     348999999999999866543   35667777777777663322              


Q ss_pred             CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhh-hcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427          549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG  627 (829)
Q Consensus       549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  627 (829)
                                ..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++. +. ...+++|++|++++|++++
T Consensus       138 ----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          138 ----------LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             ----------BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred             ----------hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence                      226667888888888888887777666 4688999999999998854 32 3358899999999999985


Q ss_pred             CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCC
Q 037427          628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP  707 (829)
Q Consensus       628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip  707 (829)
                      ..+ .+..+                                                     ++|+.|++++|+++ .+|
T Consensus       206 l~~-~~~~l-----------------------------------------------------~~L~~L~L~~N~l~-~l~  230 (317)
T 3o53_A          206 MGP-EFQSA-----------------------------------------------------AGVTWISLRNNKLV-LIE  230 (317)
T ss_dssp             ECG-GGGGG-----------------------------------------------------TTCSEEECTTSCCC-EEC
T ss_pred             chh-hhccc-----------------------------------------------------CcccEEECcCCccc-chh
Confidence            433 34333                                                     37899999999999 678


Q ss_pred             cccccCCCCCEEECCCCCCC-CCccccccccccCCeeecC-CCcCcccCCcc
Q 037427          708 PQIGKLTNIRALNFSHNNLT-GVIPVSFSNLNQVESLDVS-HNNLNGKIPPQ  757 (829)
Q Consensus       708 ~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs-~N~l~~~ip~~  757 (829)
                      ..+..+++|+.|++++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            88999999999999999999 8889999999999999999 44577766644

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.5e-26  Score=253.95  Aligned_cols=208  Identities=18%  Similarity=0.156  Sum_probs=158.0

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      ....++.++..++. +|..+  .+++++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            45788888888875 44443  3689999999999998888999999999999999999998888999999999999999


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN  580 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  580 (829)
                      +|++++..+..|..+++|++|++++|++....+..+ .+++|++|++++|...+.++...|..+++|++|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            999998888889999999999999999986555444 6677777777775555566655566667777777777766643


Q ss_pred             chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCcc
Q 037427          581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD  634 (829)
Q Consensus       581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  634 (829)
                       | .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++..|..+.
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence             3 255566666666666666665566666666666666666666554444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=6.5e-28  Score=255.34  Aligned_cols=81  Identities=27%  Similarity=0.395  Sum_probs=49.4

Q ss_pred             CcceEEcCCCcCCCCCC-cccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427          691 KMYGVDLSCNKLTGEIP-PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV  769 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  769 (829)
                      +|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|+.|||++|+|++. |. +..+++|++|++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence            45555555555555443 33445566666666666666 5555555  6666666666666654 44 666666677777


Q ss_pred             cCCccee
Q 037427          770 AHNNLSA  776 (829)
Q Consensus       770 s~N~l~g  776 (829)
                      ++|++++
T Consensus       304 ~~N~l~~  310 (312)
T 1wwl_A          304 KGNPFLD  310 (312)
T ss_dssp             TTCTTTC
T ss_pred             cCCCCCC
Confidence            7776664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=249.74  Aligned_cols=186  Identities=22%  Similarity=0.206  Sum_probs=88.7

Q ss_pred             CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427          446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS  525 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  525 (829)
                      +++.|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44444444444444444444445555555555555444444444455555555555555544444444455555555555


Q ss_pred             CCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427          526 ENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE  604 (829)
Q Consensus       526 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  604 (829)
                      +|.+....+..+ .+++|++|++++|+..+.++...|.++++|++|++++|+++. +| .+..+++|++|+|++|++++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence            555443322222 334444444444333333444335555555555555555552 22 244455555555555555544


Q ss_pred             CCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427          605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCL  633 (829)
Q Consensus       605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  633 (829)
                      .|..|.++++|+.|++++|++++..|..|
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  251 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAF  251 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhh
Confidence            45555555555555555555544444333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=6e-25  Score=251.42  Aligned_cols=80  Identities=28%  Similarity=0.375  Sum_probs=38.2

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|+.|++++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            34445555555542 33   23344555555555555 2332   3344555555555555 444445555555555555


Q ss_pred             CCcceeecC
Q 037427          771 HNNLSAAER  779 (829)
Q Consensus       771 ~N~l~g~ip  779 (829)
                      +|+++|.+|
T Consensus       293 ~N~l~~~~~  301 (622)
T 3g06_A          293 GNPLSERTL  301 (622)
T ss_dssp             SCCCCHHHH
T ss_pred             CCCCCCcCH
Confidence            555554444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.5e-27  Score=249.68  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=37.5

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                      +|+.|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|+|++|++++
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5566666666666 5555554  6677777777777755 54 6677777777777777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3.5e-25  Score=253.31  Aligned_cols=269  Identities=24%  Similarity=0.279  Sum_probs=163.5

Q ss_pred             CCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccc
Q 037427          364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNY  443 (829)
Q Consensus       364 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  443 (829)
                      .++++|++++|.++. +|..+.  ++|++|++++|.++ .+|.            .+++|++|++++|.+++. |.   .
T Consensus        40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~------------~l~~L~~L~Ls~N~l~~l-p~---~   99 (622)
T 3g06_A           40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA------------LPPELRTLEVSGNQLTSL-PV---L   99 (622)
T ss_dssp             HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC------------CCTTCCEEEECSCCCSCC-CC---C
T ss_pred             CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC------------cCCCCCEEEcCCCcCCcC-CC---C
Confidence            357888888888773 343333  56666666666665 2332            123555555555555432 22   3


Q ss_pred             ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427          444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD  523 (829)
Q Consensus       444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  523 (829)
                      +++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|..                           +++|++|+
T Consensus       100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---------------------------l~~L~~L~  147 (622)
T 3g06_A          100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---------------------------PPGLQELS  147 (622)
T ss_dssp             CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEEE
T ss_pred             CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---------------------------CCCCCEEE
Confidence            4555555555555543 222   23445555555555442 2221                           24455555


Q ss_pred             CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427          524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      +++|++++ +|.  .+++|+.|++++|.+.+ +|    ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++ 
T Consensus       148 Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-  214 (622)
T 3g06_A          148 VSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-  214 (622)
T ss_dssp             CCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-
T ss_pred             CcCCcCCC-cCC--ccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-
Confidence            55555542 222  23455555565555533 33    234667777777777764 332   2367778888888777 


Q ss_pred             cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                      .+|..   +++|+.|++++|++++ +|.                                                    
T Consensus       215 ~l~~~---~~~L~~L~Ls~N~L~~-lp~----------------------------------------------------  238 (622)
T 3g06_A          215 SLPAL---PSGLKELIVSGNRLTS-LPV----------------------------------------------------  238 (622)
T ss_dssp             SCCCC---CTTCCEEECCSSCCSC-CCC----------------------------------------------------
T ss_pred             ccCCC---CCCCCEEEccCCccCc-CCC----------------------------------------------------
Confidence            44432   4678888888888764 331                                                    


Q ss_pred             ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCC
Q 037427          684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN  762 (829)
Q Consensus       684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~  762 (829)
                          .+++|+.|++++|+++ .+|.   .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus       239 ----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          239 ----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             ----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence                1226778888888888 5665   5678888888888888 6788888888888888888888888887776554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=260.91  Aligned_cols=234  Identities=20%  Similarity=0.205  Sum_probs=159.7

Q ss_pred             CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427          470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK  549 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  549 (829)
                      +|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+    .++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence            34444444444444333444444444444444444443332  4444444444444444443221    14555555555


Q ss_pred             CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccC-CCCCCCEEECcCCcCccC
Q 037427          550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLC-GLKQLRLIDLSNNNLFGQ  628 (829)
Q Consensus       550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~  628 (829)
                      |.+.+..+    ..+++|+.|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|+.|+|++|.+++.
T Consensus       109 N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          109 NNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            55544332    2346788888888888888787888888888888888888887777775 688888888888888754


Q ss_pred             CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427          629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP  708 (829)
Q Consensus       629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  708 (829)
                      .+..                                                       .+++|+.|+|++|++++. |.
T Consensus       185 ~~~~-------------------------------------------------------~l~~L~~L~Ls~N~l~~~-~~  208 (487)
T 3oja_A          185 KGQV-------------------------------------------------------VFAKLKTLDLSSNKLAFM-GP  208 (487)
T ss_dssp             ECCC-------------------------------------------------------CCTTCCEEECCSSCCCEE-CG
T ss_pred             cccc-------------------------------------------------------cCCCCCEEECCCCCCCCC-CH
Confidence            2211                                                       134788899999999964 44


Q ss_pred             ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc-ccCCcccccCCCCcEEecc
Q 037427          709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN-GKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  770 (829)
                      .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            58899999999999999995 6778999999999999999998 7788888888888888886

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=7.3e-26  Score=254.14  Aligned_cols=236  Identities=23%  Similarity=0.200  Sum_probs=186.1

Q ss_pred             ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427          444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD  523 (829)
Q Consensus       444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  523 (829)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            4467777777777776666667777777777777777765444  677777777777777776432     236778888


Q ss_pred             CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh-cCCCCCEEEccCCccc
Q 037427          524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLIRLRYLILANNNLE  602 (829)
Q Consensus       524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~  602 (829)
                      +++|.+++..+.  .+++|+.|++++|.+.+..|.. +..+++|++|++++|.+++.+|..+. .+++|++|+|++|.++
T Consensus       106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888877765543  3467888888888887766655 88899999999999999998888886 7999999999999998


Q ss_pred             ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccccee
Q 037427          603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISF  682 (829)
Q Consensus       603 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (829)
                      +..+  ...+++|+.|+|++|++++..|. +..+                                              
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l----------------------------------------------  213 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSA----------------------------------------------  213 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGG----------------------------------------------
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCHh-HcCC----------------------------------------------
Confidence            6633  44699999999999999875443 4433                                              


Q ss_pred             eecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCC-CCccccccccccCCeeecC
Q 037427          683 SYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLT-GVIPVSFSNLNQVESLDVS  746 (829)
Q Consensus       683 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs  746 (829)
                             ++|+.|+|++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus       214 -------~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          214 -------AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -------TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence                   389999999999995 7888999999999999999999 7788889999999999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.9e-27  Score=276.36  Aligned_cols=396  Identities=15%  Similarity=0.114  Sum_probs=249.1

Q ss_pred             cCccEEEccCCCCCCCcChhhh-CCCCcCEEEcCCC-CCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCC----CCCC
Q 037427          315 FQLESVSLSGSDIHATFPKFLY-NQHDLELVDFSDS-NLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPI----QPHW  388 (829)
Q Consensus       315 ~~L~~L~Ls~~~l~~~~p~~l~-~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~  388 (829)
                      ++|++|+|++|.+++..+..+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            3677777877777666665564 6788888888888 44433233345678888888888888775443322    3567


Q ss_pred             CCCEEEccCCcccccCch-hhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEeccccc-------CCCc
Q 037427          389 HLDALHVSKNFFQGNIPL-EIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY-------FTGE  460 (829)
Q Consensus       389 ~L~~L~ls~n~l~~~ip~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~  460 (829)
                      +|++|++++|.  +.+.. .+...     ...+++|++|++++|...+.++..+..+++|+.|++..+.       +.+ 
T Consensus       185 ~L~~L~l~~~~--~~~~~~~l~~l-----~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-  256 (594)
T 2p1m_B          185 SLVSLNISCLA--SEVSFSALERL-----VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-  256 (594)
T ss_dssp             CCCEEECTTCC--SCCCHHHHHHH-----HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-
T ss_pred             cCcEEEecccC--CcCCHHHHHHH-----HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-
Confidence            88888888876  22221 11111     1125788888888883322366667778888888865443       332 


Q ss_pred             cCccCCCCCCCcEE-ECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCccc-CCCCC
Q 037427          461 IPKSLSNCSRLEGL-YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISGS-LPSCS  537 (829)
Q Consensus       461 ~~~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~  537 (829)
                      ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +... ++...
T Consensus       257 l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~  334 (594)
T 2p1m_B          257 LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA  334 (594)
T ss_dssp             HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred             HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence            33456777888888 4443322 2445555567888888888888654322 23457788888888877 3311 11111


Q ss_pred             -CCCcccEEEccC---------CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh-cCCCCCEEEcc--C----Cc
Q 037427          538 -SHSTIQQVHLSK---------NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLIRLRYLILA--N----NN  600 (829)
Q Consensus       538 -~~~~L~~L~L~~---------n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~  600 (829)
                       .+++|++|++.+         +.+++.........+++|+.|+++.|.+++..+..+. .+++|+.|+++  +    +.
T Consensus       335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence             467788887743         2332211111112477888888888888776666665 57888888888  3    45


Q ss_pred             cccc-----CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceee
Q 037427          601 LEGE-----VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMF  675 (829)
Q Consensus       601 l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (829)
                      +++.     ++..+..+++|+.|++++ .+++..+..+..                                        
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----------------------------------------  453 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----------------------------------------  453 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----------------------------------------
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----------------------------------------
Confidence            5421     122255678888888866 554322211111                                        


Q ss_pred             ecccceeeecCCCCCCcceEEcCCCcCCCCCCccc-ccCCCCCEEECCCCCCCCCccc-cccccccCCeeecCCCcCccc
Q 037427          676 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPV-SFSNLNQVESLDVSHNNLNGK  753 (829)
Q Consensus       676 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~LdLs~N~l~~~  753 (829)
                                  .+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++..
T Consensus       454 ------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  521 (594)
T 2p1m_B          454 ------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG  521 (594)
T ss_dssp             ------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred             ------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence                        13478889999998876655555 6788999999999998755444 345588999999999988644


Q ss_pred             CCccc-ccCCCCcEEeccCCc
Q 037427          754 IPPQL-VELNALVVFSVAHNN  773 (829)
Q Consensus       754 ip~~l-~~l~~L~~L~ls~N~  773 (829)
                      ....+ ..++.|+...+..+.
T Consensus       522 ~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          522 ACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHHHhCCCCEEEEecCCC
Confidence            44444 456777666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.9e-27  Score=276.35  Aligned_cols=383  Identities=12%  Similarity=0.059  Sum_probs=273.3

Q ss_pred             hhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCC-cCcCC-CCCCCCCCCCCCEEEccCCcccccCchhhhhcc
Q 037427          335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNN-SLSGP-FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYF  412 (829)
Q Consensus       335 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l  412 (829)
                      ...+++|++|++++|.+++..+..+...+++|++|++++| .++.. ++.....+++|++|++++|.+++..+..+... 
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~-  179 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF-  179 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS-
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH-
Confidence            4568899999999999987777665557999999999999 44432 22223468899999999999887666555432 


Q ss_pred             ccccccCCCcccEEEccccc--cccc-CccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCc-------CC
Q 037427          413 PSHLAMGCFNLEYLVLSENS--LHGQ-LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN-------LY  482 (829)
Q Consensus       413 ~~~~~~~~~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~  482 (829)
                          ...+++|++|++++|.  +... +......+++|++|++++|...+.++..+..+++|++|+++.+.       +.
T Consensus       180 ----~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  255 (594)
T 2p1m_B          180 ----PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS  255 (594)
T ss_dssp             ----CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred             ----hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence                2246799999999997  3222 12223457999999999993333477778889999999976553       33


Q ss_pred             CCcccccCCCCCCCEE-EccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCC--CCCCcccEEEccCCcccCcCCcc
Q 037427          483 GNIPARLGNLSSLNDI-MMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYG  559 (829)
Q Consensus       483 ~~~p~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~  559 (829)
                      + ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.....  ..+++|++|++++| +.......
T Consensus       256 ~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          256 G-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             H-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred             H-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence            2 44578899999999 4444332 345555667899999999999976433221  26789999999988 43211111


Q ss_pred             ccCCCCCccEEEcc---------CCcCCCcchhhhh-cCCCCCEEEccCCcccccCCcccC-CCCCCCEEECc--C----
Q 037427          560 TFFNRSSIVTLDLS---------YNSFSGNIPYWIE-RLIRLRYLILANNNLEGEVPNQLC-GLKQLRLIDLS--N----  622 (829)
Q Consensus       560 ~l~~l~~L~~L~Ls---------~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----  622 (829)
                      ....+++|++|+++         .+.+++.....+. .+++|+.|.+..|.+++..+..+. .+++|+.|+++  +    
T Consensus       333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~  412 (594)
T 2p1m_B          333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP  412 (594)
T ss_dssp             HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred             HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence            13358899999994         3566654444444 489999999999999876665554 58999999999  3    


Q ss_pred             CcCccCCCC-CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc
Q 037427          623 NNLFGQIPG-CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK  701 (829)
Q Consensus       623 N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  701 (829)
                      +.+++...+ .+...                                                 ...+++|+.|++++ .
T Consensus       413 ~~l~~~~~~~~~~~l-------------------------------------------------~~~~~~L~~L~L~~-~  442 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAI-------------------------------------------------VEHCKDLRRLSLSG-L  442 (594)
T ss_dssp             CTTTCCCTHHHHHHH-------------------------------------------------HHHCTTCCEEECCS-S
T ss_pred             ccccCCchhhHHHHH-------------------------------------------------HhhCCCccEEeecC-c
Confidence            333311000 00000                                                 01245899999987 7


Q ss_pred             CCCCCCccccc-CCCCCEEECCCCCCCCCccccc-cccccCCeeecCCCcCcccCCc-ccccCCCCcEEeccCCcce
Q 037427          702 LTGEIPPQIGK-LTNIRALNFSHNNLTGVIPVSF-SNLNQVESLDVSHNNLNGKIPP-QLVELNALVVFSVAHNNLS  775 (829)
Q Consensus       702 l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~  775 (829)
                      +++..+..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            77666666766 8999999999999987766665 6789999999999999765444 3455899999999999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=6.1e-24  Score=220.81  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCC----EEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcE
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIR----ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVV  766 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  766 (829)
                      +|+.|++++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|+.|+|++|++++..+..+..+++|++
T Consensus       150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred             CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence            455555555555544445555555554    5666666666544444433 35666666666666555555566666666


Q ss_pred             EeccCCcceeecC
Q 037427          767 FSVAHNNLSAAER  779 (829)
Q Consensus       767 L~ls~N~l~g~ip  779 (829)
                      |++++|++++..|
T Consensus       229 L~l~~N~~~c~c~  241 (276)
T 2z62_A          229 IWLHTNPWDCSCP  241 (276)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEccCCcccccCC
Confidence            6666666665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.5e-23  Score=217.01  Aligned_cols=203  Identities=21%  Similarity=0.231  Sum_probs=147.4

Q ss_pred             hhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCC
Q 037427          513 FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR  592 (829)
Q Consensus       513 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  592 (829)
                      +.++++++.++++++.++ .+|..+ .+.++.|++++|.+.+..+.. |..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~-~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC-CTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC-CCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            456788888888888887 444433 257778888888875544443 77778888888888887754332  5677788


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccc
Q 037427          593 YLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEES  672 (829)
Q Consensus       593 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (829)
                      +|++++|+++ .+|..+..+++|++|++++|++++..|..|..+.                                   
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----------------------------------  124 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----------------------------------  124 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence            8888888776 6677777777888888888877765555555443                                   


Q ss_pred             eeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          673 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       673 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                                        +|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ 
T Consensus       125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence                              6777888888887666666777778888888888887666666677778888888888877 


Q ss_pred             cCCcccccCCCCcEEeccCCcce
Q 037427          753 KIPPQLVELNALVVFSVAHNNLS  775 (829)
Q Consensus       753 ~ip~~l~~l~~L~~L~ls~N~l~  775 (829)
                      .+|..+..+..|+.+++++|++.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccChhhcccccCCeEEeCCCCcc
Confidence            56777777777778887777765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=7.4e-23  Score=211.66  Aligned_cols=204  Identities=21%  Similarity=0.257  Sum_probs=147.3

Q ss_pred             CCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccC
Q 037427          519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILAN  598 (829)
Q Consensus       519 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  598 (829)
                      .+.++++++.++ .+|..+ .+++++|++++|++.+ ++...|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            445555555554 233322 2455666666666543 3333377778888888888887766666667788888888888


Q ss_pred             CcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427          599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK  678 (829)
Q Consensus       599 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (829)
                      |++++..+..+..+++|++|++++|++++..|..+..+.                                         
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------  133 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----------------------------------------  133 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----------------------------------------
Confidence            888766666777788888888888888766555554433                                         


Q ss_pred             cceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccc
Q 037427          679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL  758 (829)
Q Consensus       679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l  758 (829)
                                  +|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+
T Consensus       134 ------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          134 ------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence                        77888888888886666668888888888888888887777778888888888888888887666678


Q ss_pred             ccCCCCcEEeccCCcceeec
Q 037427          759 VELNALVVFSVAHNNLSAAE  778 (829)
Q Consensus       759 ~~l~~L~~L~ls~N~l~g~i  778 (829)
                      ..+++|++|++++|++...-
T Consensus       202 ~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          202 DSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTCTTCCEEECCSSCBCCSS
T ss_pred             ccccCCCEEEecCCCeeCCC
Confidence            88888888888888876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.4e-24  Score=219.82  Aligned_cols=221  Identities=20%  Similarity=0.256  Sum_probs=165.3

Q ss_pred             CcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCC
Q 037427          471 LEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN  550 (829)
Q Consensus       471 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n  550 (829)
                      +..+++..+.+.+.  .....+++|+.|++++|.+...  ..+..+++|++|++++|.++                    
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~--------------------   76 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH--------------------   76 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC--------------------
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC--------------------
Confidence            33444445444432  1233455556666666555422  23455555555555555544                    


Q ss_pred             cccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427          551 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP  630 (829)
Q Consensus       551 ~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  630 (829)
                         + ++  .+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus        77 ---~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           77 ---D-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             ---C-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ---C-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence               3 22  26778888888888888887777778888889999999998887777778888999999999998886666


Q ss_pred             CCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCccc
Q 037427          631 GCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI  710 (829)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l  710 (829)
                      ..++.+.                                                     +|+.|++++|++++..|..+
T Consensus       151 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~  177 (272)
T 3rfs_A          151 GVFDKLT-----------------------------------------------------NLTELDLSYNQLQSLPEGVF  177 (272)
T ss_dssp             TTTTTCT-----------------------------------------------------TCCEEECCSSCCCCCCTTTT
T ss_pred             HHhccCc-----------------------------------------------------cCCEEECCCCCcCccCHHHh
Confidence            5555443                                                     78889999999998778788


Q ss_pred             ccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          711 GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       711 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      +.+++|++|++++|++++..|..++.+++|+.|++++|++.+..|       .|+.+++++|.++|.+|..
T Consensus       178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            999999999999999999888889999999999999999986654       6888999999999999975

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.9e-23  Score=213.34  Aligned_cols=211  Identities=20%  Similarity=0.178  Sum_probs=115.2

Q ss_pred             CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427          470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK  549 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  549 (829)
                      +|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..             
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------   95 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-------------   95 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-------------
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-------------
Confidence            4556666666555444445555555555555555555444445555556666666655555333222             


Q ss_pred             CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc-CCcccCCCCCCCEEECcCCcCccC
Q 037427          550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE-VPNQLCGLKQLRLIDLSNNNLFGQ  628 (829)
Q Consensus       550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~  628 (829)
                                 |..+++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+..+++|++|++++|++++.
T Consensus        96 -----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           96 -----------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             -----------TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             -----------hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence                       33344444444444444443333344444555555555554432 344555555555555555555443


Q ss_pred             CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcc-eEEcCCCcCCCCCC
Q 037427          629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY-GVDLSCNKLTGEIP  707 (829)
Q Consensus       629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip  707 (829)
                      .+..+..+.                                                  .++.+. .|++++|++++..+
T Consensus       165 ~~~~~~~l~--------------------------------------------------~L~~l~l~L~ls~n~l~~~~~  194 (276)
T 2z62_A          165 YCTDLRVLH--------------------------------------------------QMPLLNLSLDLSLNPMNFIQP  194 (276)
T ss_dssp             CGGGGHHHH--------------------------------------------------TCTTCCEEEECCSSCCCEECT
T ss_pred             CHHHhhhhh--------------------------------------------------hccccceeeecCCCcccccCc
Confidence            333322221                                                  011222 56777777765444


Q ss_pred             cccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427          708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       708 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                      ..+. ..+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus       195 ~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          195 GAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            4443 3478888888888887666667788888888888888886544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.5e-22  Score=207.71  Aligned_cols=141  Identities=23%  Similarity=0.286  Sum_probs=97.1

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  640 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  640 (829)
                      |..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+.   
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---  157 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT---  157 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---
T ss_pred             hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc---
Confidence            44555555555555555555555555666666666666666655555666667777777777766644443333332   


Q ss_pred             CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEE
Q 037427          641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN  720 (829)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  720 (829)
                                                                        +|+.|++++|++++..+..|..+++|++|+
T Consensus       158 --------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          158 --------------------------------------------------SLKELRLYNNQLKRVPEGAFDKLTELKTLK  187 (270)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------ccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence                                                              677777777777766666788888999999


Q ss_pred             CCCCCCCCCccccccccccCCeeecCCCcCcccC
Q 037427          721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI  754 (829)
Q Consensus       721 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i  754 (829)
                      |++|++++..+..|..+++|+.|+|++|++...-
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            9999998777777888899999999999887543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.4e-22  Score=211.37  Aligned_cols=204  Identities=24%  Similarity=0.221  Sum_probs=177.9

Q ss_pred             ccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCC
Q 037427          488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSS  566 (829)
Q Consensus       488 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~  566 (829)
                      .+++++++++++++++.++. +|..+  .+.++.|++++|.+++..+..+ .+++|++|++++|.+.+..+   ...+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTT
T ss_pred             cccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCc
Confidence            36788999999999999984 55444  3789999999999997777655 88999999999999965433   378899


Q ss_pred             ccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          567 IVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       567 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      |++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+.         
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---------  148 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP---------  148 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---------
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc---------
Confidence            999999999998 6777889999999999999999987788999999999999999999876665555443         


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                                  +|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus       149 --------------------------------------------~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          149 --------------------------------------------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             --------------------------------------------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence                                                        899999999999977777789999999999999999


Q ss_pred             CCCccccccccccCCeeecCCCcCcc
Q 037427          727 TGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       727 ~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                      + .+|..+..+.+|+.|+|++|++..
T Consensus       185 ~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          185 Y-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             C-ccChhhcccccCCeEEeCCCCccC
Confidence            9 778888889999999999999974

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=9.2e-23  Score=211.12  Aligned_cols=230  Identities=17%  Similarity=0.216  Sum_probs=179.0

Q ss_pred             ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427          444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD  523 (829)
Q Consensus       444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  523 (829)
                      +..+..+++..+.+.+..  ....+++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            344556666666666443  35578899999999999874 3 3588999999999999999863  4788899999999


Q ss_pred             CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427          524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      +++|.+++..+.                        .|..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus        92 L~~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A           92 LTGNQLQSLPNG------------------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             CTTSCCCCCCTT------------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChh------------------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence            999988744332                        25667777777777777777777777778888888888888876


Q ss_pred             cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                      ..+..+..+++|+.|++++|++++..|..++.+.                                              
T Consensus       148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------  181 (272)
T 3rfs_A          148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT----------------------------------------------  181 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------------------------------
T ss_pred             cCHHHhccCccCCEEECCCCCcCccCHHHhcCCc----------------------------------------------
Confidence            6666777888888888888888766555444443                                              


Q ss_pred             ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCC
Q 037427          684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA  763 (829)
Q Consensus       684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  763 (829)
                             +|+.|++++|++++..|..++.+++|+.|++++|.+.+..       ++|+.|+++.|+++|.+|..++.+..
T Consensus       182 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          182 -------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             -------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             -------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccCC
Confidence                   7888888888888888878889999999999999888653       46889999999999999988776644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.3e-24  Score=231.98  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=28.4

Q ss_pred             CccEEEccCCcCCCcchhhhh----cC-CCCCEEEccCCccccc----CCcccCC-CCCCCEEECcCCcCc
Q 037427          566 SIVTLDLSYNSFSGNIPYWIE----RL-IRLRYLILANNNLEGE----VPNQLCG-LKQLRLIDLSNNNLF  626 (829)
Q Consensus       566 ~L~~L~Ls~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~  626 (829)
                      +|++|++++|++++..+..+.    .+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|+++
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            555555555555544443322    22 3555555555555431    2223322 235555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=9.5e-24  Score=228.36  Aligned_cols=178  Identities=23%  Similarity=0.181  Sum_probs=117.0

Q ss_pred             EEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcc----cccCCCC-CCCEEEccCCcccCCChhhhhCC-----CC
Q 037427          449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP----ARLGNLS-SLNDIMMASNHLQGPIPLEFCQL-----NY  518 (829)
Q Consensus       449 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~  518 (829)
                      .++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788888988888877777779999999999887666    6777888 89999999999988777777664     88


Q ss_pred             CCEEeCCCCcCcccCCCCC-----CC-CcccEEEccCCcccCcCCcc---ccCC-CCCccEEEccCCcCCCcch----hh
Q 037427          519 LEILDLSENNISGSLPSCS-----SH-STIQQVHLSKNMLYGPLKYG---TFFN-RSSIVTLDLSYNSFSGNIP----YW  584 (829)
Q Consensus       519 L~~L~Ls~n~l~~~~~~~~-----~~-~~L~~L~L~~n~l~~~~~~~---~l~~-l~~L~~L~Ls~n~l~~~~~----~~  584 (829)
                      |++|++++|.+++..+..+     .. ++|++|++++|.+.+..+..   .+.. .++|++|++++|++++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            8999999888876544321     22 56666777666664332211   0222 2466666666666664332    23


Q ss_pred             hhcCC-CCCEEEccCCcccccCCccc----CCC-CCCCEEECcCCcCc
Q 037427          585 IERLI-RLRYLILANNNLEGEVPNQL----CGL-KQLRLIDLSNNNLF  626 (829)
Q Consensus       585 l~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~Ls~N~l~  626 (829)
                      +..++ +|++|+|++|++++..+..+    ..+ ++|++|||++|+++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            33443 66666666666654444322    233 36666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.8e-24  Score=235.02  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             ccCccCCCCCCCcEEECCCCcCCCCcc----cccCCCCCCCEEEccCCc---ccCCChhhh-------hCCCCCCEEeCC
Q 037427          460 EIPKSLSNCSRLEGLYMSDNNLYGNIP----ARLGNLSSLNDIMMASNH---LQGPIPLEF-------CQLNYLEILDLS  525 (829)
Q Consensus       460 ~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~Ls  525 (829)
                      .++..+..+++|++|++++|.+++..+    ..+..+++|++|++++|.   +.+.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            455667778889999999998886543    347788899999998864   444556554       677888888888


Q ss_pred             CCcCccc----CCCCC-CCCcccEEEccCCcc
Q 037427          526 ENNISGS----LPSCS-SHSTIQQVHLSKNML  552 (829)
Q Consensus       526 ~n~l~~~----~~~~~-~~~~L~~L~L~~n~l  552 (829)
                      +|.+++.    +|..+ .+++|++|+|++|.+
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            8887752    23222 445555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.8e-21  Score=198.78  Aligned_cols=180  Identities=24%  Similarity=0.272  Sum_probs=94.1

Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEcc
Q 037427          518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA  597 (829)
Q Consensus       518 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  597 (829)
                      ..++++++++.++ .+|..+. +.++.|++++|.+.+..+.. |..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556777777666 3343221 45555555555554433322 5555555555555555555555555555555555555


Q ss_pred             CCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeec
Q 037427          598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT  677 (829)
Q Consensus       598 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (829)
                      +|++++..+..+..+++|++|++++|++++..+..+..+.                                        
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------------------------------------  131 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT----------------------------------------  131 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------------------------
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC----------------------------------------
Confidence            5555544444555555555555555555533333332222                                        


Q ss_pred             ccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCccc
Q 037427          678 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK  753 (829)
Q Consensus       678 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~  753 (829)
                                   +|+.|+|++|++++..+..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus       132 -------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          132 -------------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -------------cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                         455555555555544444455555555555555555554444555555555555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.3e-21  Score=206.10  Aligned_cols=208  Identities=20%  Similarity=0.352  Sum_probs=110.6

Q ss_pred             EECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCccc
Q 037427          474 LYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLY  553 (829)
Q Consensus       474 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  553 (829)
                      +.+..+.+.+.+  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+                   
T Consensus        24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-------------------   80 (308)
T 1h6u_A           24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-------------------   80 (308)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred             HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-------------------
Confidence            344455554322  23456677777777777764 33 46667777777777777664322                   


Q ss_pred             CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427          554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL  633 (829)
Q Consensus       554 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  633 (829)
                             +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++. +..+++|+.|++++|++++..+  +
T Consensus        81 -------~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l  147 (308)
T 1h6u_A           81 -------LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--L  147 (308)
T ss_dssp             -------GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             -------HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--c
Confidence                   34444455555555544432 1 34445555555555555543 221 4555555555555555543221  1


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccC
Q 037427          634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL  713 (829)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l  713 (829)
                      ..                                                     +++|+.|++++|++++. +. +..+
T Consensus       148 ~~-----------------------------------------------------l~~L~~L~l~~n~l~~~-~~-l~~l  172 (308)
T 1h6u_A          148 AG-----------------------------------------------------LTNLQYLSIGNAQVSDL-TP-LANL  172 (308)
T ss_dssp             GG-----------------------------------------------------CTTCCEEECCSSCCCCC-GG-GTTC
T ss_pred             cC-----------------------------------------------------CCCccEEEccCCcCCCC-hh-hcCC
Confidence            11                                                     22455555555555532 22 5556


Q ss_pred             CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427          714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  776 (829)
                      ++|+.|++++|++++..+  +..+++|+.|+|++|++++..|  +..+++|++|++++|++++
T Consensus       173 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            666666666666664433  5556666666666666654332  5556666666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=6.3e-22  Score=209.17  Aligned_cols=184  Identities=18%  Similarity=0.129  Sum_probs=92.3

Q ss_pred             cccEEEcccccccccCcc---ccccccCCcEEecccccCCCccCccC--CCCCCCcEEECCCCcCCCCcc----cccCCC
Q 037427          422 NLEYLVLSENSLHGQLFS---KKNYLRKLARLHLDANYFTGEIPKSL--SNCSRLEGLYMSDNNLYGNIP----ARLGNL  492 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~l  492 (829)
                      .++.+.+.++.++.....   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            455555555554422111   11224557777777777766666665  666777777777777665433    223345


Q ss_pred             CCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427          493 SSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL  572 (829)
Q Consensus       493 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  572 (829)
                      ++|++|++++|++.+..+..+..+++|++|++++|++.+..                    +..+...+..+++|++|++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEEC
Confidence            55555555555555555555555555555555555543210                    0000111244556666666


Q ss_pred             cCCcCCCcch--h-hhhcCCCCCEEEccCCcccccCCcccCCC---CCCCEEECcCCcC
Q 037427          573 SYNSFSGNIP--Y-WIERLIRLRYLILANNNLEGEVPNQLCGL---KQLRLIDLSNNNL  625 (829)
Q Consensus       573 s~n~l~~~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~N~l  625 (829)
                      ++|+++...+  . .+..+++|++|+|++|++++..|..+..+   ++|++|++++|++
T Consensus       205 s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          205 RNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence            6666642111  1 13445555555555555554444444333   3444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-22  Score=213.42  Aligned_cols=232  Identities=18%  Similarity=0.179  Sum_probs=141.3

Q ss_pred             CCcEEECCCCcCCCCccc---ccCCCCCCCEEEccCCcccCCChhhh--hCCCCCCEEeCCCCcCcccCCCCCCCCcccE
Q 037427          470 RLEGLYMSDNNLYGNIPA---RLGNLSSLNDIMMASNHLQGPIPLEF--CQLNYLEILDLSENNISGSLPSCSSHSTIQQ  544 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  544 (829)
                      .++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+..        
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------  136 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------  136 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------
Confidence            456666666555421100   11123445666666666655555554  55555555555555555322210        


Q ss_pred             EEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc--C--CcccCCCCCCCEEEC
Q 037427          545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE--V--PNQLCGLKQLRLIDL  620 (829)
Q Consensus       545 L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L  620 (829)
                                  +...+..+++|++|++++|++.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++
T Consensus       137 ------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          137 ------------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             ------------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred             ------------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence                        011134567777777777777777777777777777777777776542  1  223456777888888


Q ss_pred             cCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCC
Q 037427          621 SNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN  700 (829)
Q Consensus       621 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  700 (829)
                      ++|+++. +|.....+                                                 ...+++|++|||++|
T Consensus       205 s~N~l~~-l~~~~~~l-------------------------------------------------~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          205 RNTGMET-PTGVCAAL-------------------------------------------------AAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CSSCCCC-HHHHHHHH-------------------------------------------------HHHTCCCSSEECTTS
T ss_pred             CCCCCCc-hHHHHHHH-------------------------------------------------HhcCCCCCEEECCCC
Confidence            8877752 11100000                                                 001236777888888


Q ss_pred             cCCCCCCcccccC---CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427          701 KLTGEIPPQIGKL---TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       701 ~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  776 (829)
                      ++++.+|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8887777777666   58888888888888 5676664  6888888888888853 33 5677888888888888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=8.9e-24  Score=231.00  Aligned_cols=253  Identities=15%  Similarity=0.174  Sum_probs=162.8

Q ss_pred             CccccccccCCcEEecccccCCCcc----CccCCCCCCCcEEECCCCc---CCCCccccc-------CCCCCCCEEEccC
Q 037427          437 LFSKKNYLRKLARLHLDANYFTGEI----PKSLSNCSRLEGLYMSDNN---LYGNIPARL-------GNLSSLNDIMMAS  502 (829)
Q Consensus       437 ~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~---l~~~~p~~l-------~~l~~L~~L~l~~  502 (829)
                      ++..+..+++|++|++++|.+++..    +..+..+++|++|++++|.   +.+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4566778899999999999998653    3457889999999999964   445556554       7899999999999


Q ss_pred             CcccC----CChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcC
Q 037427          503 NHLQG----PIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF  577 (829)
Q Consensus       503 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l  577 (829)
                      |.+.+    .++..+..+++|++|++++|.++...+..+ ..  +..  +..+++.        ...++|++|++++|++
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~--------~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKA--------KNAPPLRSIICGRNRL  171 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHH--------HTCCCCCEEECCSSCC
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhc--------ccCCCCcEEECCCCCC
Confidence            99987    477788999999999999999864322211 00  000  0000000        0015666666666666


Q ss_pred             C-Ccch---hhhhcCCCCCEEEccCCcccc-----cCCcccCCCCCCCEEECcCCcCc----cCCCCCccCCCccCCCCC
Q 037427          578 S-GNIP---YWIERLIRLRYLILANNNLEG-----EVPNQLCGLKQLRLIDLSNNNLF----GQIPGCLDNTSLHNNGDN  644 (829)
Q Consensus       578 ~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~~~~~~  644 (829)
                      + +.++   ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    +.+|..+..+        
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~--------  243 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW--------  243 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC--------
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC--------
Confidence            5 2333   345566677777777776652     23335666666777777766664    2233322222        


Q ss_pred             CCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCC----CCcccc--cCCCCCE
Q 037427          645 VGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE----IPPQIG--KLTNIRA  718 (829)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~  718 (829)
                                                                   ++|+.|+|++|++++.    +|..+.  .+++|++
T Consensus       244 ---------------------------------------------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~  278 (386)
T 2ca6_A          244 ---------------------------------------------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  278 (386)
T ss_dssp             ---------------------------------------------TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             ---------------------------------------------CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence                                                         2566666666666544    444553  3677777


Q ss_pred             EECCCCCCCC----Cccccc-cccccCCeeecCCCcCcccC
Q 037427          719 LNFSHNNLTG----VIPVSF-SNLNQVESLDVSHNNLNGKI  754 (829)
Q Consensus       719 L~Ls~N~l~~----~~p~~l-~~l~~L~~LdLs~N~l~~~i  754 (829)
                      |+|++|.+++    .+|..+ .++++|++|+|++|++++..
T Consensus       279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            7777777776    366665 55677777777777777655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.1e-22  Score=218.02  Aligned_cols=175  Identities=18%  Similarity=0.227  Sum_probs=91.1

Q ss_pred             ccEEEcccccccccCccccccc--cCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCC-cccccCCCCCCCEEE
Q 037427          423 LEYLVLSENSLHGQLFSKKNYL--RKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN-IPARLGNLSSLNDIM  499 (829)
Q Consensus       423 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~  499 (829)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            456666665554   2233334  5666666666666654444 33566666666666666544 555566666666666


Q ss_pred             ccCCcccCCChhhhhCCCCCCEEeCCCC-cCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCC-cC
Q 037427          500 MASNHLQGPIPLEFCQLNYLEILDLSEN-NISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN-SF  577 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n-~l  577 (829)
                      +++|.+++..+..+..+++|++|++++| .+++.                      .++.. +..+++|++|++++| .+
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~-~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTL-LSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHH-HHHCTTCCEEECCCCTTC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHH-HhcCCCCCEEcCCCCCCc
Confidence            6666665555555555666666666655 33321                      01111 334455555555555 55


Q ss_pred             CCc-chhhhhcCC-CCCEEEccCC--ccc-ccCCcccCCCCCCCEEECcCCc
Q 037427          578 SGN-IPYWIERLI-RLRYLILANN--NLE-GEVPNQLCGLKQLRLIDLSNNN  624 (829)
Q Consensus       578 ~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~Ls~N~  624 (829)
                      ++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|++++|.
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            432 344455555 5555555555  232 2233334444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.5e-23  Score=220.40  Aligned_cols=251  Identities=15%  Similarity=0.167  Sum_probs=186.1

Q ss_pred             CCcEEecccccCCCccCccCCCC--CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCC-ChhhhhCCCCCCEE
Q 037427          446 KLARLHLDANYFTGEIPKSLSNC--SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP-IPLEFCQLNYLEIL  522 (829)
Q Consensus       446 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  522 (829)
                      .++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3677788777765   3344445  6777788887777765554 44677777777777777654 56666677777777


Q ss_pred             eCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCC-cCCCc-chhhhhcCCCCCEEEccCC-
Q 037427          523 DLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN-SFSGN-IPYWIERLIRLRYLILANN-  599 (829)
Q Consensus       523 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n-  599 (829)
                      ++++|.+++                       ..+.. +..+++|++|++++| .+++. ++..+..+++|++|++++| 
T Consensus       124 ~L~~~~l~~-----------------------~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          124 SLEGLRLSD-----------------------PIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             ECTTCBCCH-----------------------HHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             eCcCcccCH-----------------------HHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            777776553                       33333 677899999999999 67763 6777889999999999999 


Q ss_pred             ccccc-CCcccCCCC-CCCEEECcCCc--Cc-cCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcccccccee
Q 037427          600 NLEGE-VPNQLCGLK-QLRLIDLSNNN--LF-GQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIM  674 (829)
Q Consensus       600 ~l~~~-~~~~l~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (829)
                      .+++. ++..+..++ +|++|++++|.  ++ +.+|..+..                                       
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~---------------------------------------  220 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---------------------------------------  220 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH---------------------------------------
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh---------------------------------------
Confidence            99864 577788899 99999999994  44 223322222                                       


Q ss_pred             eecccceeeecCCCCCCcceEEcCCCc-CCCCCCcccccCCCCCEEECCCCC-CCCCccccccccccCCeeecCCCcCcc
Q 037427          675 FTTKEISFSYKGKPLNKMYGVDLSCNK-LTGEIPPQIGKLTNIRALNFSHNN-LTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       675 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                                    +++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++.
T Consensus       221 --------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          221 --------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             --------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             --------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence                          3489999999999 788888899999999999999995 33332336888999999999999 442


Q ss_pred             cCCcccccC-CCCcEEeccCCcceeecCCC
Q 037427          753 KIPPQLVEL-NALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       753 ~ip~~l~~l-~~L~~L~ls~N~l~g~ip~~  781 (829)
                         +.+..+ ..+..|++++|+++|..|..
T Consensus       286 ---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          286 ---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             ---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             ---HHHHHHHhhCcceEEecccCccccCCc
Confidence               234444 34777889999999998864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.1e-21  Score=202.32  Aligned_cols=162  Identities=22%  Similarity=0.351  Sum_probs=90.2

Q ss_pred             EcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCccc
Q 037427          427 VLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ  506 (829)
Q Consensus       427 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  506 (829)
                      .+..+.+++.+  ....+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|+++
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence            44444444322  23345666666666666653 33 35566666666666666654322  555556666666665555


Q ss_pred             CCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh
Q 037427          507 GPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE  586 (829)
Q Consensus       507 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  586 (829)
                      +. + .+..+++|++|++++|.+++                        ++.  +..+++|++|++++|++++..+  +.
T Consensus        99 ~~-~-~~~~l~~L~~L~l~~n~l~~------------------------~~~--l~~l~~L~~L~l~~n~l~~~~~--l~  148 (308)
T 1h6u_A           99 NV-S-AIAGLQSIKTLDLTSTQITD------------------------VTP--LAGLSNLQVLYLDLNQITNISP--LA  148 (308)
T ss_dssp             CC-G-GGTTCTTCCEEECTTSCCCC------------------------CGG--GTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred             Cc-h-hhcCCCCCCEEECCCCCCCC------------------------chh--hcCCCCCCEEECCCCccCcCcc--cc
Confidence            32 2 34445555555555554431                        111  5566677777777777665443  66


Q ss_pred             cCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc
Q 037427          587 RLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       587 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      .+++|++|++++|++++..+  +..+++|+.|++++|+++
T Consensus       149 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            66677777777776664322  556666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.2e-20  Score=192.68  Aligned_cols=182  Identities=20%  Similarity=0.262  Sum_probs=159.3

Q ss_pred             CcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037427          540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID  619 (829)
Q Consensus       540 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  619 (829)
                      ...++++++++.+. .+|.. +.  +.++.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            35778999999884 56654 32  6899999999999998888899999999999999999988888899999999999


Q ss_pred             CcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCC
Q 037427          620 LSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC  699 (829)
Q Consensus       620 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  699 (829)
                      +++|++++..|..+..+.                                                     +|++|+|++
T Consensus        90 L~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~  116 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGG  116 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCS
T ss_pred             CCCCcccccChhHhcccC-----------------------------------------------------CCCEEEcCC
Confidence            999999876666555443                                                     889999999


Q ss_pred             CcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeec
Q 037427          700 NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE  778 (829)
Q Consensus       700 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  778 (829)
                      |++++..+..|..+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|++|++++|++++..
T Consensus       117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            9999777777899999999999999999888878999999999999999999888888999999999999999998763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.8e-21  Score=194.23  Aligned_cols=196  Identities=18%  Similarity=0.256  Sum_probs=113.3

Q ss_pred             CCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCc-CcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427          494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN-ISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL  572 (829)
Q Consensus       494 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  572 (829)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++                        ++...|.++++|++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~------------------------i~~~~f~~l~~L~~L~l   87 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ------------------------LESHSFYNLSKVTHIEI   87 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE------------------------ECTTTEESCTTCCEEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce------------------------eCHhHcCCCcCCcEEEC
Confidence            66666666666665555556666666666666664 442                        22222555566666666


Q ss_pred             cC-CcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCC---EEECcCC-cCccCCCCCccCCCccCCCCCCCC
Q 037427          573 SY-NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLR---LIDLSNN-NLFGQIPGCLDNTSLHNNGDNVGS  647 (829)
Q Consensus       573 s~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~~~~~~~~~~~~  647 (829)
                      ++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+   +|++++| ++++..+..|..+.          
T Consensus        88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~----------  155 (239)
T 2xwt_C           88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC----------  155 (239)
T ss_dssp             EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB----------
T ss_pred             CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh----------
Confidence            65 56655555555666666666666666653 443 55555555   6666666 55544443343332          


Q ss_pred             CCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcc-eEEcCCCcCCCCCCcccccCCCCCEEECCCCC-
Q 037427          648 SAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY-GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNN-  725 (829)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-  725 (829)
                                                                 +|+ .|++++|+++ .+|......++|+.|++++|+ 
T Consensus       156 -------------------------------------------~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~  191 (239)
T 2xwt_C          156 -------------------------------------------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY  191 (239)
T ss_dssp             -------------------------------------------SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTT
T ss_pred             -------------------------------------------cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCC
Confidence                                                       556 6666666666 333332222666777777773 


Q ss_pred             CCCCcccccccc-ccCCeeecCCCcCcccCCcccccCCCCcEEeccCC
Q 037427          726 LTGVIPVSFSNL-NQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN  772 (829)
Q Consensus       726 l~~~~p~~l~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  772 (829)
                      +++..+..|..+ ++|+.||+++|++++ +|..  .+.+|+.|+++++
T Consensus       192 l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          192 LTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             cccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            665555666666 677777777777763 3333  4556666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.4e-21  Score=193.29  Aligned_cols=196  Identities=16%  Similarity=0.153  Sum_probs=126.8

Q ss_pred             cccEEEcccccccccCccccccccCCcEEeccccc-CCCccCccCCCCCCCcEEECCC-CcCCCCcccccCCCCCCCEEE
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY-FTGEIPKSLSNCSRLEGLYMSD-NNLYGNIPARLGNLSSLNDIM  499 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  499 (829)
                      +|++|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555556666666666666665 5544444566666666666666 666655555666666666666


Q ss_pred             ccCCcccCCChhhhhCCCCCC---EEeCCCC-cCcccCCCCC-CCCccc-EEEccCCcccCcCCccccCCCCCccEEEcc
Q 037427          500 MASNHLQGPIPLEFCQLNYLE---ILDLSEN-NISGSLPSCS-SHSTIQ-QVHLSKNMLYGPLKYGTFFNRSSIVTLDLS  573 (829)
Q Consensus       500 l~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~-~~~~L~-~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  573 (829)
                      +++|++++ +|. +..+++|+   +|++++| .+++..+..+ .+++|+ +|++++|++. .+|...|.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            66666664 343 55666666   6777776 6664444434 566666 6777776664 555554554 778888888


Q ss_pred             CCc-CCCcchhhhhcC-CCCCEEEccCCcccccCCcccCCCCCCCEEECcCCc
Q 037427          574 YNS-FSGNIPYWIERL-IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN  624 (829)
Q Consensus       574 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  624 (829)
                      +|+ +++..+..+..+ ++|++|++++|++++ +|..  .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            884 776666777777 788888888888873 4433  56777888877653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=1.6e-20  Score=212.11  Aligned_cols=94  Identities=21%  Similarity=0.325  Sum_probs=53.0

Q ss_pred             CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427          470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK  549 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  549 (829)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +. .+|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence            67788888887775 55544  266777777777776 344   345666777777776664 443 21 1455555555


Q ss_pred             CcccCcCCccccCCCCCccEEEccCCcCC
Q 037427          550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFS  578 (829)
Q Consensus       550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~  578 (829)
                      |++++ +|.    .+++|+.|++++|+++
T Consensus       130 N~l~~-lp~----~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          130 NQLTM-LPE----LPALLEYINADNNQLT  153 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSCCS
T ss_pred             CcCCC-CCC----cCccccEEeCCCCccC
Confidence            54433 332    2344444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=8.8e-20  Score=206.00  Aligned_cols=115  Identities=22%  Similarity=0.337  Sum_probs=59.4

Q ss_pred             CCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEcc
Q 037427          494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS  573 (829)
Q Consensus       494 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  573 (829)
                      +|+.|++++|.+++ +|..+  .++|++|++++|.++ .+|  ..+++|++|++++|++++ +|.  +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence            56666666666664 44333  255666666666665 344  234555555555555544 433  222  55555555


Q ss_pred             CCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427          574 YNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG  627 (829)
Q Consensus       574 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  627 (829)
                      +|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|++++|++++
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            555554 332   34555555555555553 333   34455555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.7e-20  Score=196.52  Aligned_cols=240  Identities=18%  Similarity=0.135  Sum_probs=128.7

Q ss_pred             cEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCE-EeCC
Q 037427          448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEI-LDLS  525 (829)
Q Consensus       448 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~Ls  525 (829)
                      ++++.++++++ .+|..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.++++++. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666666666 455544  2466777777777764444456666666666666666654443 34555555543 3444


Q ss_pred             CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccC-Cccccc
Q 037427          526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILAN-NNLEGE  604 (829)
Q Consensus       526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~  604 (829)
                      +|+++...|.                        .|..+++|++|++++|++.+..+..+....++..|++.+ +++...
T Consensus        89 ~N~l~~l~~~------------------------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           89 ANNLLYINPE------------------------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             ETTCCEECTT------------------------SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             CCcccccCch------------------------hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence            4555433333                        355566666666666666555444444445555666544 345433


Q ss_pred             CCcccCCCC-CCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          605 VPNQLCGLK-QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       605 ~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                      .+..+..+. .++.|++++|+|+...+..+..                                                
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~------------------------------------------------  176 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNG------------------------------------------------  176 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTT------------------------------------------------
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccc------------------------------------------------
Confidence            444455543 4666666666665322222211                                                


Q ss_pred             ecCCCCCCcceEEcCC-CcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCC
Q 037427          684 YKGKPLNKMYGVDLSC-NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN  762 (829)
Q Consensus       684 ~~~~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~  762 (829)
                            .+++.+++++ |.++...+..|..+++|++|+|++|+|+...+..|.+   |+.|.+.++.--..+| .+.+++
T Consensus       177 ------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~  246 (350)
T 4ay9_X          177 ------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLV  246 (350)
T ss_dssp             ------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCC
T ss_pred             ------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCc
Confidence                  1455666653 4454333345666777777777777776444444433   3333333332222455 356666


Q ss_pred             CCcEEeccCC
Q 037427          763 ALVVFSVAHN  772 (829)
Q Consensus       763 ~L~~L~ls~N  772 (829)
                      +|+.++++++
T Consensus       247 ~L~~l~l~~~  256 (350)
T 4ay9_X          247 ALMEASLTYP  256 (350)
T ss_dssp             SCCEEECSCH
T ss_pred             ChhhCcCCCC
Confidence            7777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=8.9e-20  Score=196.04  Aligned_cols=207  Identities=16%  Similarity=0.089  Sum_probs=140.7

Q ss_pred             CCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccE-EEccCCcCCCcchhhhhcCCCCCEEE
Q 037427          518 YLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT-LDLSYNSFSGNIPYWIERLIRLRYLI  595 (829)
Q Consensus       518 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~  595 (829)
                      ++++|+|++|+++...+..+ .+++|++|+|++|++.+.++..+|.++++++. +++++|+++...|..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34444444444442222222 34444444444554445566666888888765 66778999988889999999999999


Q ss_pred             ccCCcccccCCcccCCCCCCCEEECcC-CcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcccccccee
Q 037427          596 LANNNLEGEVPNQLCGLKQLRLIDLSN-NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIM  674 (829)
Q Consensus       596 L~~n~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (829)
                      +++|++.+..+..+....++..|++.+ +++....+..|..+.                                     
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------------------------------  153 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------------------------------  153 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-------------------------------------
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcc-------------------------------------
Confidence            999999877676777778888999876 455533333333322                                     


Q ss_pred             eecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCC-CCCCCCccccccccccCCeeecCCCcCccc
Q 037427          675 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSH-NNLTGVIPVSFSNLNQVESLDVSHNNLNGK  753 (829)
Q Consensus       675 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~  753 (829)
                                     ..++.|+|++|+|+ .+|.......+|+.|++++ |.++...++.|..+++|+.|||++|+|+..
T Consensus       154 ---------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l  217 (350)
T 4ay9_X          154 ---------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  217 (350)
T ss_dssp             ---------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred             ---------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence                           25788999999999 4555555667899999985 666655556789999999999999999954


Q ss_pred             CCcccccCCCCcEEeccCCcceeecCC
Q 037427          754 IPPQLVELNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       754 ip~~l~~l~~L~~L~ls~N~l~g~ip~  780 (829)
                      .+..+.   .|+.|.+.+++--..+|.
T Consensus       218 p~~~~~---~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          218 PSYGLE---NLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             CSSSCT---TCCEEECTTCTTCCCCCC
T ss_pred             Chhhhc---cchHhhhccCCCcCcCCC
Confidence            444444   555565555543344553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.4e-19  Score=179.14  Aligned_cols=174  Identities=22%  Similarity=0.224  Sum_probs=135.3

Q ss_pred             EEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCC
Q 037427          544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN  623 (829)
Q Consensus       544 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  623 (829)
                      .++.+++.+. .+|..   -.++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        11 ~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            4445555442 34432   2357888888888888777777788888888888888888666666788888888888888


Q ss_pred             cCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCC
Q 037427          624 NLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT  703 (829)
Q Consensus       624 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  703 (829)
                      ++++..+..+..+.                                                     +|++|++++|+++
T Consensus        87 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~  113 (208)
T 2o6s_A           87 QLQSLPNGVFDKLT-----------------------------------------------------QLKELALNTNQLQ  113 (208)
T ss_dssp             CCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCC
T ss_pred             cCCccCHhHhcCcc-----------------------------------------------------CCCEEEcCCCcCc
Confidence            88765554444433                                                     7888899999988


Q ss_pred             CCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427          704 GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       704 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      +..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+..       +.|++|++++|+++|.+|..
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHCTTTBBCT
T ss_pred             ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhCCceeecc
Confidence            777777888999999999999999877777888999999999999887644       47888999999999999974

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.4e-19  Score=176.30  Aligned_cols=151  Identities=23%  Similarity=0.234  Sum_probs=70.4

Q ss_pred             cEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCC
Q 037427          448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN  527 (829)
Q Consensus       448 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  527 (829)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555555555 233322  235555555555555444444455555555555555555444444444455555555444


Q ss_pred             cCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCc
Q 037427          528 NISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN  607 (829)
Q Consensus       528 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  607 (829)
                      ++++..+                        ..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus        87 ~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           87 QLQSLPN------------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CCCCCCT------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCccCH------------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            4442211                        1134444444444444444444444444444444444444444433333


Q ss_pred             ccCCCCCCCEEECcCCcC
Q 037427          608 QLCGLKQLRLIDLSNNNL  625 (829)
Q Consensus       608 ~l~~l~~L~~L~Ls~N~l  625 (829)
                      .+..+++|+.|++++|++
T Consensus       143 ~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             TTTTCTTCCEEECCSCCB
T ss_pred             HhccCCCccEEEecCCCe
Confidence            344444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.2e-19  Score=195.77  Aligned_cols=176  Identities=23%  Similarity=0.227  Sum_probs=102.0

Q ss_pred             cEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh-cCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427          543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS  621 (829)
Q Consensus       543 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  621 (829)
                      +.++++++.+. .+|.. +  .+.++.|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46666666663 34543 2  23466667777766665555555 66666666666666665555666666666666666


Q ss_pred             CCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc
Q 037427          622 NNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK  701 (829)
Q Consensus       622 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  701 (829)
                      +|++++..+..|..+.                                                     +|+.|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence            6666544444443332                                                     56666666666


Q ss_pred             CCCCCCcccccCCCCCEEECCCCCCCCCccccc---cccccCCeeecCCCcCcccCCcccccCCCC--cEEeccCCcce
Q 037427          702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF---SNLNQVESLDVSHNNLNGKIPPQLVELNAL--VVFSVAHNNLS  775 (829)
Q Consensus       702 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L--~~L~ls~N~l~  775 (829)
                      +++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.+  +.|++++|++.
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            665556666666666666666666664433333   445666666666666664444455555442  45555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=5.8e-19  Score=175.88  Aligned_cols=89  Identities=20%  Similarity=0.243  Sum_probs=58.8

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|++|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|++|+++
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            55666666666665555566666666666666666666666666666666666666666666666666666666667777


Q ss_pred             CCcceeecC
Q 037427          771 HNNLSAAER  779 (829)
Q Consensus       771 ~N~l~g~ip  779 (829)
                      +|++++..+
T Consensus       162 ~N~l~c~c~  170 (220)
T 2v70_A          162 ANPFNCNCY  170 (220)
T ss_dssp             SCCEECSGG
T ss_pred             CcCCcCCCc
Confidence            666665433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.3e-18  Score=173.23  Aligned_cols=85  Identities=19%  Similarity=0.226  Sum_probs=42.7

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|++|+++
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            44444444444443333334455555555555555555555555555555555555555554444445555555555555


Q ss_pred             CCcce
Q 037427          771 HNNLS  775 (829)
Q Consensus       771 ~N~l~  775 (829)
                      +|++.
T Consensus       161 ~N~~~  165 (220)
T 2v9t_B          161 QNPFI  165 (220)
T ss_dssp             SSCEE
T ss_pred             CCCcC
Confidence            55544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.7e-18  Score=170.52  Aligned_cols=160  Identities=23%  Similarity=0.318  Sum_probs=122.3

Q ss_pred             CCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEE
Q 037427           52 HSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLL  131 (829)
Q Consensus        52 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L  131 (829)
                      ..+.|+|++|.|...  +++                .++...   .++|++|+|++|.+.+..+..    |..+++|++|
T Consensus        15 ~~~~Cs~~~v~c~~~--~l~----------------~ip~~~---~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L   69 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSK--RHA----------------SVPAGI---PTNAQILYLHDNQITKLEPGV----FDSLINLKEL   69 (229)
T ss_dssp             TTCEEETTEEECTTS--CCS----------------SCCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEE
T ss_pred             CCCEEeCCEeEccCC--CcC----------------ccCCCC---CCCCCEEEcCCCccCccCHHH----hhCccCCcEE
Confidence            567899999999742  111                111111   278899999999998877654    7888999999


Q ss_pred             ECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEccccc
Q 037427          132 NLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR  211 (829)
Q Consensus       132 ~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  211 (829)
                      +|++|.++...+..|.++++|++|+|++|.+++..+  ..|..+++|++|+|++|.++ .+|..+..+++|++|++++|+
T Consensus        70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred             ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh--hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence            999999887666778889999999999998886544  56788888888888888888 567777888888888888888


Q ss_pred             CccccCCCccccCCCCCCcEEECCCccCccc
Q 037427          212 VDGALGDDEEGLCRLGHLQELHMGGNDLRGT  242 (829)
Q Consensus       212 l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~  242 (829)
                      +.+..+.   .+..+++|++|++++|.+.+.
T Consensus       147 l~~~~~~---~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          147 LKSIPHG---AFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCCTT---TTTTCTTCCEEECTTSCBCTT
T ss_pred             CCccCHH---HHhCCCCCCEEEeeCCCccCC
Confidence            8765544   567778888888888877654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2e-18  Score=186.21  Aligned_cols=177  Identities=22%  Similarity=0.193  Sum_probs=151.3

Q ss_pred             CEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccC-CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccC
Q 037427          520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF-NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILAN  598 (829)
Q Consensus       520 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  598 (829)
                      +.++++++.++ .+|..+ ...++.|+|++|++.+..+. .+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~-~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL-PSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC-CTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC-CCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            68999999998 456543 35689999999999665544 376 899999999999999988888999999999999999


Q ss_pred             CcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427          599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK  678 (829)
Q Consensus       599 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (829)
                      |++++..+..|..+++|++|+|++|++++..|..|..+.                                         
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----------------------------------------  136 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----------------------------------------  136 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------------------------------------
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------------------------------------
Confidence            999988788899999999999999999987777766554                                         


Q ss_pred             cceeeecCCCCCCcceEEcCCCcCCCCCCccc---ccCCCCCEEECCCCCCCCCcccccccccc--CCeeecCCCcCcc
Q 037427          679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI---GKLTNIRALNFSHNNLTGVIPVSFSNLNQ--VESLDVSHNNLNG  752 (829)
Q Consensus       679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~LdLs~N~l~~  752 (829)
                                  +|+.|+|++|++++..+..|   ..+++|+.|+|++|+|++..+..+..++.  |+.|+|++|++..
T Consensus       137 ------------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          137 ------------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ------------TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ------------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                        89999999999996554555   67999999999999999877788888887  4899999999974

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=4.3e-18  Score=169.56  Aligned_cols=155  Identities=21%  Similarity=0.219  Sum_probs=120.4

Q ss_pred             EEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427          544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN  622 (829)
Q Consensus       544 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  622 (829)
                      .+++++|.+. .+|.. +  .+.+++|++++|++++..+ ..+..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus        15 ~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4555555552 34433 2  2345778888888876644 4577888888888888888877777888888888888888


Q ss_pred             CcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcC
Q 037427          623 NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL  702 (829)
Q Consensus       623 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  702 (829)
                      |++++..|..|..+.                                                     +|++|+|++|++
T Consensus        91 N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l  117 (220)
T 2v70_A           91 NRLENVQHKMFKGLE-----------------------------------------------------SLKTLMLRSNRI  117 (220)
T ss_dssp             SCCCCCCGGGGTTCS-----------------------------------------------------SCCEEECTTSCC
T ss_pred             CccCccCHhHhcCCc-----------------------------------------------------CCCEEECCCCcC
Confidence            888776665555443                                                     788888999999


Q ss_pred             CCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427          703 TGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       703 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                      ++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            88888889999999999999999998889999999999999999999986554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=6.3e-18  Score=169.59  Aligned_cols=155  Identities=24%  Similarity=0.291  Sum_probs=94.2

Q ss_pred             ccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427          542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS  621 (829)
Q Consensus       542 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  621 (829)
                      -+.++.+++.+ +.+|.. +  .++|++|++++|++++..|..+..+++|++|+|++|++....+..|..+++|++|+|+
T Consensus        21 ~~~v~c~~~~l-~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCC-SSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCc-CccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            44566666666 345543 2  2566677777777766666666666667777777766664444556666666666666


Q ss_pred             CCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc
Q 037427          622 NNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK  701 (829)
Q Consensus       622 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  701 (829)
                      +|++++..+..+..+.                                                     +|+.|+|++|+
T Consensus        97 ~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~  123 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLV-----------------------------------------------------HLKELFMCCNK  123 (229)
T ss_dssp             SSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCccChhHhCcch-----------------------------------------------------hhCeEeccCCc
Confidence            6666644443333332                                                     56666666666


Q ss_pred             CCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccC
Q 037427          702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI  754 (829)
Q Consensus       702 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i  754 (829)
                      ++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+..
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            66 55666666666666666666666555555666666666666666665443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=6e-18  Score=176.41  Aligned_cols=80  Identities=21%  Similarity=0.418  Sum_probs=42.2

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|+.|++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus       135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (291)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence            455555555555532  345555555555555555554433  5555555555555555553 22 25555555555555


Q ss_pred             CCccee
Q 037427          771 HNNLSA  776 (829)
Q Consensus       771 ~N~l~g  776 (829)
                      +|+++.
T Consensus       209 ~n~i~~  214 (291)
T 1h6t_A          209 SQECLN  214 (291)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=7.8e-18  Score=167.68  Aligned_cols=153  Identities=19%  Similarity=0.229  Sum_probs=124.3

Q ss_pred             cEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427          543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN  622 (829)
Q Consensus       543 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  622 (829)
                      +.++++++.+. .+|.. +  .++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            34555555552 34443 2  25788888888888877777888888999999999999887788899999999999999


Q ss_pred             CcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcC
Q 037427          623 NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL  702 (829)
Q Consensus       623 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  702 (829)
                      |++++..+..|..+.                                                     +|+.|+|++|++
T Consensus        90 N~l~~l~~~~f~~l~-----------------------------------------------------~L~~L~L~~N~l  116 (220)
T 2v9t_B           90 NKITELPKSLFEGLF-----------------------------------------------------SLQLLLLNANKI  116 (220)
T ss_dssp             SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred             CcCCccCHhHccCCC-----------------------------------------------------CCCEEECCCCCC
Confidence            998855444444433                                                     788999999999


Q ss_pred             CCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          703 TGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       703 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                      ++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            98888999999999999999999998888889999999999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.8e-18  Score=177.14  Aligned_cols=188  Identities=20%  Similarity=0.300  Sum_probs=116.8

Q ss_pred             cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427          472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM  551 (829)
Q Consensus       472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  551 (829)
                      ..+.+..+.+.+..  .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+                 
T Consensus        27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-----------------   85 (291)
T 1h6t_A           27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-----------------   85 (291)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-----------------
T ss_pred             HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-----------------
Confidence            33445555554332  234566677777777766643 2 35666666666666666653222                 


Q ss_pred             ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427          552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                               +..+++|++|++++|++++ ++ .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.  .
T Consensus        86 ---------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A           86 ---------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T  150 (291)
T ss_dssp             ---------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             ---------cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h
Confidence                     4555666666666666654 22 266666666666666666542  3466667777777777766542  1


Q ss_pred             CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427          632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG  711 (829)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~  711 (829)
                      .+..                                                     +++|+.|++++|++++..|  +.
T Consensus       151 ~l~~-----------------------------------------------------l~~L~~L~L~~N~l~~~~~--l~  175 (291)
T 1h6t_A          151 VLSR-----------------------------------------------------LTKLDTLSLEDNQISDIVP--LA  175 (291)
T ss_dssp             GGGG-----------------------------------------------------CTTCSEEECCSSCCCCCGG--GT
T ss_pred             hhcc-----------------------------------------------------CCCCCEEEccCCccccchh--hc
Confidence            1222                                                     2367777777777775444  77


Q ss_pred             cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                      .+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus       176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            788888888888888754 3 37778888888888888774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=5.1e-18  Score=193.91  Aligned_cols=148  Identities=23%  Similarity=0.384  Sum_probs=81.5

Q ss_pred             CCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEc
Q 037427          468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL  547 (829)
Q Consensus       468 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L  547 (829)
                      +++|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..+  +..+++|+.|+|++|.+.+ +|....+++|+.|+|
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEe
Confidence            3344444444444432 11 23444444444444444443322  4445555555555555442 222223444444444


Q ss_pred             cCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427          548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG  627 (829)
Q Consensus       548 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  627 (829)
                      ++|.+.+ ++ . +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|++++
T Consensus       117 s~N~l~~-l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          117 EHNGISD-IN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             TTSCCCC-CG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cCCCCCC-Cc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            4444432 22 1 66677778888888877754  457777788888888887775555  7777777777777777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.2e-18  Score=193.88  Aligned_cols=193  Identities=20%  Similarity=0.304  Sum_probs=152.2

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      .+..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..|  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45556666666665433  4567888888888888874 34 47788888888888888886544  7888888888888


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  581 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  581 (829)
                      +|.+.+. + .+..+++|+.|+|++|.+.+ ++....+++|+.|+|++|.+.+.   ..+..+++|+.|+|++|++.+..
T Consensus        96 ~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKDL-S-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCCC-T-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCCC-h-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch
Confidence            8888753 3 67888888999999888875 45555788899999999988654   23888999999999999999877


Q ss_pred             hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427          582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP  630 (829)
Q Consensus       582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  630 (829)
                      |  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+...
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            7  88899999999999999853  358899999999999999876433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.4e-17  Score=162.96  Aligned_cols=154  Identities=16%  Similarity=0.242  Sum_probs=117.6

Q ss_pred             CCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCC
Q 037427          562 FNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN  641 (829)
Q Consensus       562 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  641 (829)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..++.+.    
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~----  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT----  112 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT----
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC----
Confidence            45567788888888877 444 5777888888888888664  234677788888888888888776666555443    


Q ss_pred             CCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEEC
Q 037427          642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNF  721 (829)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  721 (829)
                                                                       +|++|++++|++++..|..++.+++|++|++
T Consensus       113 -------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          113 -------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             -------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             -------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                             7888888888888778888889999999999


Q ss_pred             CCCC-CCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427          722 SHNN-LTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       722 s~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  776 (829)
                      ++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998 55 455 68888999999999999985 44 78888999999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=2.7e-20  Score=211.53  Aligned_cols=76  Identities=16%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCc-cccccccccCCeeecCCCcCcccCCcc---cccCCCCcE
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI-PVSFSNLNQVESLDVSHNNLNGKIPPQ---LVELNALVV  766 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~  766 (829)
                      +|+.|+|++|++++ +| .++.+++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|..   +..+++|++
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            45555555555553 44 5666666666666666666555 666666666666666666666544321   233566666


Q ss_pred             Ee
Q 037427          767 FS  768 (829)
Q Consensus       767 L~  768 (829)
                      ||
T Consensus       565 L~  566 (567)
T 1dce_A          565 IL  566 (567)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.2e-17  Score=168.04  Aligned_cols=168  Identities=17%  Similarity=0.239  Sum_probs=110.6

Q ss_pred             cccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEEC
Q 037427          541 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDL  620 (829)
Q Consensus       541 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  620 (829)
                      .+..+++++|.+.+..   .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|+.|++
T Consensus        20 ~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3444455555553322   15566677777777777763 33 56677777777777777764433  677777777777


Q ss_pred             cCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCC
Q 037427          621 SNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN  700 (829)
Q Consensus       621 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  700 (829)
                      ++|++++ +|....                                                       ++|+.|++++|
T Consensus        93 ~~N~l~~-l~~~~~-------------------------------------------------------~~L~~L~L~~N  116 (263)
T 1xeu_A           93 NRNRLKN-LNGIPS-------------------------------------------------------ACLSRLFLDNN  116 (263)
T ss_dssp             CSSCCSC-CTTCCC-------------------------------------------------------SSCCEEECCSS
T ss_pred             CCCccCC-cCcccc-------------------------------------------------------CcccEEEccCC
Confidence            7777764 221000                                                       26777777777


Q ss_pred             cCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427          701 KLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA  777 (829)
Q Consensus       701 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  777 (829)
                      ++++ +| .+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.  ..+..+++|++|++++|++++.
T Consensus       117 ~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          117 ELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            7774 33 477777788888888877754 3 577777788888888877765  5677777778888888777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=1.4e-18  Score=203.76  Aligned_cols=199  Identities=17%  Similarity=0.117  Sum_probs=81.9

Q ss_pred             ChHHHHHHHHHhhhcCCC-CCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCC
Q 037427           21 CLEQERSALLRLKHDFFN-DPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQ   99 (829)
Q Consensus        21 ~~~~~~~~ll~~k~~~~~-~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~   99 (829)
                      ..+.++++|+++..+... ....-..|.  ...+..+.|.++.+.  +.+|++++|.++.+..            .....
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~------------~~~~~  192 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVS--TPLTPKIELFANGKDE------------ANQAL  192 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceec--CCccceEEeeCCCCCc------------chhhH
Confidence            446688999999887641 112334675  345567889998886  4789999998775421            11233


Q ss_pred             CcEEeCCCCCCCCcCCCc-----cccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427          100 LETLHLDSNNIAGFVENG-----GLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN  174 (829)
Q Consensus       100 L~~L~Ls~n~l~~~~~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~  174 (829)
                      |+.++|+.+.|.+.....     ....+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|  ..|++
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~~~  268 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELP--AEIKN  268 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCC--GGGGG
T ss_pred             hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccC--hhhhC
Confidence            455555555544321100     0012556666666666666665 34555556666666666666666 555  45666


Q ss_pred             CCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC
Q 037427          175 FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP  244 (829)
Q Consensus       175 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p  244 (829)
                      +++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|.   .++++++|++|+|++|.+++.+|
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~---~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW---EFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS---STTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh---hhhcCCCccEEeCCCCccCCCCh
Confidence            666666666666666 44566666666666666666654 4454   45566666666666666665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=7e-17  Score=157.98  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=95.1

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  640 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  640 (829)
                      +..+++|++|++++|.+..  +..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..++.+.   
T Consensus        62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~---  136 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP---  136 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS---
T ss_pred             HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC---
Confidence            5666677777777775542  23566777777777777777766677777777888888888877765555444333   


Q ss_pred             CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc-CCCCCCcccccCCCCCEE
Q 037427          641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK-LTGEIPPQIGKLTNIRAL  719 (829)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L  719 (829)
                                                                        +|++|++++|+ ++ .+| .+..+++|++|
T Consensus       137 --------------------------------------------------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L  164 (197)
T 4ezg_A          137 --------------------------------------------------KVNSIDLSYNGAIT-DIM-PLKTLPELKSL  164 (197)
T ss_dssp             --------------------------------------------------SCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred             --------------------------------------------------CCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence                                                              67778888887 44 555 68888899999


Q ss_pred             ECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       720 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                      ++++|++++. + .+..+++|+.|++++|++.+
T Consensus       165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9999998864 3 68888999999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.3e-16  Score=155.05  Aligned_cols=131  Identities=26%  Similarity=0.362  Sum_probs=70.3

Q ss_pred             cEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       568 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      +++++++|+++ .+|..+..  +|++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+.         
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   78 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence            45666666664 34433322  566666666666544432 355555566666665555555454444332         


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                                  +|++|+|++|++++..|..|..+++|++|+|++|++
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                                                        455555555555555555555555555555555555


Q ss_pred             CCCccccccccccCCeeecCCCcCcccC
Q 037427          727 TGVIPVSFSNLNQVESLDVSHNNLNGKI  754 (829)
Q Consensus       727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~i  754 (829)
                      ++.+|..|..+++|+.|+|++|++++..
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            5555555555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.3e-18  Score=197.68  Aligned_cols=191  Identities=19%  Similarity=0.180  Sum_probs=138.1

Q ss_pred             hCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCC
Q 037427          514 CQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR  592 (829)
Q Consensus       514 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  592 (829)
                      ...+.|+.|++++|.+. .+|..+ .+++|+.|++++|.....++..            +..+...+..|..++.+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------------l~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------------MRALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------------HHhcccccCCHHHHHHHHhcc
Confidence            34566667777777665 344433 4555555555444310000000            001114455666666666666


Q ss_pred             EEE-ccCC-------------cccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427          593 YLI-LANN-------------NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT  658 (829)
Q Consensus       593 ~L~-L~~n-------------~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (829)
                      .|+ ++.|             .++...+      ..|+.|++++|++++ +|. ++.+.                     
T Consensus       413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~---------------------  463 (567)
T 1dce_A          413 AVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLL---------------------  463 (567)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGT---------------------
T ss_pred             cCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccc---------------------
Confidence            666 4444             3432111      258999999999986 565 55544                     


Q ss_pred             ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427          659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN  738 (829)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  738 (829)
                                                      +|+.|+|++|+++ .+|..|+.+++|+.|+|++|+|++ +| .++.++
T Consensus       464 --------------------------------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~  508 (567)
T 1dce_A          464 --------------------------------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP  508 (567)
T ss_dssp             --------------------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred             --------------------------------cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence                                            8999999999999 889999999999999999999997 67 899999


Q ss_pred             cCCeeecCCCcCcccC-CcccccCCCCcEEeccCCcceeecCCC
Q 037427          739 QVESLDVSHNNLNGKI-PPQLVELNALVVFSVAHNNLSAAERNP  781 (829)
Q Consensus       739 ~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~  781 (829)
                      +|+.|+|++|+|++.+ |..+..+++|++|++++|++++.+|..
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            9999999999999887 999999999999999999999987753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1e-16  Score=164.36  Aligned_cols=150  Identities=19%  Similarity=0.313  Sum_probs=93.2

Q ss_pred             CCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEE
Q 037427          466 SNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQV  545 (829)
Q Consensus       466 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  545 (829)
                      ..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +|.... ++|++|
T Consensus        38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L  111 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRL  111 (263)
T ss_dssp             HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEE
T ss_pred             hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc-CcccEE
Confidence            344444444444444442 22 34444444444444444443322  4455555555555555543 222222 566666


Q ss_pred             EccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcC
Q 037427          546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL  625 (829)
Q Consensus       546 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  625 (829)
                      ++++|++.+ ++ . +..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++
T Consensus       112 ~L~~N~l~~-~~-~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          112 FLDNNELRD-TD-S-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ECCSSCCSB-SG-G-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EccCCccCC-Ch-h-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            666666644 32 2 77888888899998888865 3 578888999999999988865  6688888999999999988


Q ss_pred             ccC
Q 037427          626 FGQ  628 (829)
Q Consensus       626 ~~~  628 (829)
                      ++.
T Consensus       185 ~~~  187 (263)
T 1xeu_A          185 VNE  187 (263)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.5e-17  Score=195.08  Aligned_cols=132  Identities=21%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccC---------CChhhhhCCCCCCEEeCCCCcCcccCCCCCCC
Q 037427          469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG---------PIPLEFCQLNYLEILDLSENNISGSLPSCSSH  539 (829)
Q Consensus       469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  539 (829)
                      +.++.|++.+|.+.. .+..+     |+.++|+.|.+.+         ..+..+..++.|+.|+|++|.+.         
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~---------  237 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF---------  237 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS---------
T ss_pred             CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC---------
Confidence            456777787777764 23222     3333344433322         23444445555555555555544         


Q ss_pred             CcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037427          540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID  619 (829)
Q Consensus       540 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  619 (829)
                                     .+|.. +..+++|++|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..+..+++|++|+
T Consensus       238 ---------------~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          238 ---------------NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             ---------------CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             ---------------CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence                           23332 234444555555555554 44444455555555555555554 4444455555555555


Q ss_pred             CcCCcCccCCCCCcc
Q 037427          620 LSNNNLFGQIPGCLD  634 (829)
Q Consensus       620 Ls~N~l~~~~p~~~~  634 (829)
                      |++|.|+ .+|..|+
T Consensus       300 L~~N~l~-~lp~~~~  313 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFG  313 (727)
T ss_dssp             CCSSCCC-CCCSSTT
T ss_pred             CCCCCCC-ccChhhh
Confidence            5555543 3343333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=4.8e-16  Score=151.14  Aligned_cols=89  Identities=22%  Similarity=0.394  Sum_probs=63.2

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|++|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|++++.+|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            66677777777776667777777777777777777776666667777777777777777777667777777777777777


Q ss_pred             CCcceeecC
Q 037427          771 HNNLSAAER  779 (829)
Q Consensus       771 ~N~l~g~ip  779 (829)
                      +|++++..+
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            777766544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=9.7e-16  Score=145.65  Aligned_cols=134  Identities=23%  Similarity=0.280  Sum_probs=94.9

Q ss_pred             CCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcc
Q 037427          589 IRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSIL  667 (829)
Q Consensus       589 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (829)
                      ++|++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..                                
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------------   69 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK--------------------------------   69 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------------------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------------------------------
Confidence            56666666666665 55666666667777777777776543  22222                                


Q ss_pred             ccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCc-cccccccccCCeeecC
Q 037427          668 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI-PVSFSNLNQVESLDVS  746 (829)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs  746 (829)
                                           +++|++|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|+++
T Consensus        70 ---------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~  128 (168)
T 2ell_A           70 ---------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF  128 (168)
T ss_dssp             ---------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred             ---------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence                                 236777777777777667777777888888888888888643 2678888888888888


Q ss_pred             CCcCcccCC---cccccCCCCcEEeccCCcceee
Q 037427          747 HNNLNGKIP---PQLVELNALVVFSVAHNNLSAA  777 (829)
Q Consensus       747 ~N~l~~~ip---~~l~~l~~L~~L~ls~N~l~g~  777 (829)
                      +|++++..+   ..+..+++|++|++++|.+...
T Consensus       129 ~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             SSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            888886554   4778888888888888877643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=6.8e-16  Score=146.71  Aligned_cols=138  Identities=23%  Similarity=0.298  Sum_probs=107.9

Q ss_pred             CCCccEEEccCCcCC-CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCC
Q 037427          564 RSSIVTLDLSYNSFS-GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG  642 (829)
Q Consensus       564 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  642 (829)
                      .++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+      
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------   94 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------   94 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC------
Confidence            467888888888887 56777777888888888888888754  677888888888888888876655544333      


Q ss_pred             CCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC-CcccccCCCCCEEEC
Q 037427          643 DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI-PPQIGKLTNIRALNF  721 (829)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~L  721 (829)
                                                                     ++|+.|++++|++++.. +..+..+++|++|++
T Consensus        95 -----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           95 -----------------------------------------------PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             -----------------------------------------------TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             -----------------------------------------------CCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                           37888888888888542 277889999999999


Q ss_pred             CCCCCCCCcc---ccccccccCCeeecCCCcCcccCCcc
Q 037427          722 SHNNLTGVIP---VSFSNLNQVESLDVSHNNLNGKIPPQ  757 (829)
Q Consensus       722 s~N~l~~~~p---~~l~~l~~L~~LdLs~N~l~~~ip~~  757 (829)
                      ++|++++..+   ..+..+++|+.||+++|.+. .+|++
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            9999997665   57888999999999999987 55543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.1e-15  Score=142.02  Aligned_cols=128  Identities=21%  Similarity=0.273  Sum_probs=99.7

Q ss_pred             CCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcc
Q 037427          589 IRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSIL  667 (829)
Q Consensus       589 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (829)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..                                
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------------   62 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------------------------------   62 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------------------------------
Confidence            56777777777776 56777777778888888888877644  22222                                


Q ss_pred             ccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCC-ccccccccccCCeeecC
Q 037427          668 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVS  746 (829)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs  746 (829)
                                           +++|++|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|++|+++
T Consensus        63 ---------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           63 ---------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             ---------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             ---------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence                                 33788888888888877888888899999999999999874 45788899999999999


Q ss_pred             CCcCcccCC---cccccCCCCcEEeccC
Q 037427          747 HNNLNGKIP---PQLVELNALVVFSVAH  771 (829)
Q Consensus       747 ~N~l~~~ip---~~l~~l~~L~~L~ls~  771 (829)
                      +|++++..+   ..+..+++|++|++++
T Consensus       122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          122 NCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999987665   5788899999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.5e-15  Score=144.90  Aligned_cols=62  Identities=29%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             cEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427          568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL  633 (829)
Q Consensus       568 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  633 (829)
                      +++++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.++++|++|+|++|++++..|..|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence            45566666655 3333322  35566666666655 444555555555555555555554433333

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=7.1e-16  Score=164.08  Aligned_cols=76  Identities=8%  Similarity=0.022  Sum_probs=48.0

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCC-EEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEe
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIR-ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS  768 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  768 (829)
                      +|+.|+|++| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            4555555555 4444555666666666 666666 56655556666677777777766766655556666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=4.9e-15  Score=142.09  Aligned_cols=89  Identities=20%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            34444444444443333444555555555555555554444445555555555555555554333334455555555555


Q ss_pred             CCcceeecC
Q 037427          771 HNNLSAAER  779 (829)
Q Consensus       771 ~N~l~g~ip  779 (829)
                      +|++++..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.3e-15  Score=141.57  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=100.1

Q ss_pred             CCCccEEEccCCcCC-CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCC
Q 037427          564 RSSIVTLDLSYNSFS-GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG  642 (829)
Q Consensus       564 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  642 (829)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+.     
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence            356778888888877 56777777788888888888888754  6677888888888888888766555443332     


Q ss_pred             CCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCC-CCcccccCCCCCEEEC
Q 037427          643 DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE-IPPQIGKLTNIRALNF  721 (829)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~L  721 (829)
                                                                      +|++|++++|++++. .|..++.+++|++|++
T Consensus        89 ------------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           89 ------------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ------------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ------------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                                            788888888888863 3478899999999999


Q ss_pred             CCCCCCCCcc---ccccccccCCeeecCC
Q 037427          722 SHNNLTGVIP---VSFSNLNQVESLDVSH  747 (829)
Q Consensus       722 s~N~l~~~~p---~~l~~l~~L~~LdLs~  747 (829)
                      ++|++++..+   ..+..+++|+.||+++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999997766   5788899999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.8e-15  Score=160.90  Aligned_cols=195  Identities=14%  Similarity=0.047  Sum_probs=123.1

Q ss_pred             CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcC----CCCcccccCCCCCC
Q 037427          420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL----YGNIPARLGNLSSL  495 (829)
Q Consensus       420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L  495 (829)
                      |++|+.+++.+ .++......|.++++|+.+++++|.+....+.+|.++.++..+....+..    .......|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            77777777777 66666666777777777777777777666666777776666666655321    11122234344444


Q ss_pred             C--------------------------EEEccCCcccCCChhhh-hCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEc
Q 037427          496 N--------------------------DIMMASNHLQGPIPLEF-CQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHL  547 (829)
Q Consensus       496 ~--------------------------~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L  547 (829)
                      +                          .+.+.++-.. .....+ ..+++|+.+++++|+++...+..+ .+.+|+.+++
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            4                          2322222110 001111 136778888888777774444445 6777777777


Q ss_pred             cCCcccCcCCccccCCCCCcc-EEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037427          548 SKNMLYGPLKYGTFFNRSSIV-TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID  619 (829)
Q Consensus       548 ~~n~l~~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  619 (829)
                      .+| + ..++..+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus       258 ~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          258 PHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             Ccc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            776 3 456666677777777 777777 66656667777777788887777777766666777777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=8.7e-15  Score=142.13  Aligned_cols=86  Identities=22%  Similarity=0.309  Sum_probs=58.8

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|+.|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            66667777777776666667777777777777777776666667777777777777777765555556667777777777


Q ss_pred             CCccee
Q 037427          771 HNNLSA  776 (829)
Q Consensus       771 ~N~l~g  776 (829)
                      +|++.+
T Consensus       135 ~N~~~C  140 (193)
T 2wfh_A          135 ANPLYC  140 (193)
T ss_dssp             SSCEEC
T ss_pred             CCCeec
Confidence            776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.6e-14  Score=138.52  Aligned_cols=133  Identities=23%  Similarity=0.240  Sum_probs=98.7

Q ss_pred             ccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          567 IVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       567 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      .+.+++++++++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+.         
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------   76 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT---------   76 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence            3556666666663 33322  25777777777777766666677778888888888887755444444433         


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                                  +|++|++++|++++..+..+..+++|++|++++|++
T Consensus        77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence                                                        778888888888877777788899999999999999


Q ss_pred             CCCccccccccccCCeeecCCCcCcccCC
Q 037427          727 TGVIPVSFSNLNQVESLDVSHNNLNGKIP  755 (829)
Q Consensus       727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  755 (829)
                      ++..+..+..+++|+.|+|++|++++..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            97777677889999999999999987655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=1.3e-13  Score=149.67  Aligned_cols=265  Identities=15%  Similarity=0.153  Sum_probs=182.3

Q ss_pred             ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427          444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD  523 (829)
Q Consensus       444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  523 (829)
                      +..++.+.+.++ ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            456667776653 443555667764 6888888766 554555667664 688888875 56556667788888888888


Q ss_pred             CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427          524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      +++|+++......+.+.+|+.+.+..+ + ..++..+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++.
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            888888765555666788888888754 3 4677777899999999999874 55566667777 789999994 55665


Q ss_pred             cCCcccCCCCCCCEEECcCCcCcc-----CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427          604 EVPNQLCGLKQLRLIDLSNNNLFG-----QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK  678 (829)
Q Consensus       604 ~~~~~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (829)
                      ....+|.++++|+.+++.+|.+..     ..+.+|.                                            
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~--------------------------------------------  297 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE--------------------------------------------  297 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT--------------------------------------------
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh--------------------------------------------
Confidence            667888899999999988877641     1111222                                            


Q ss_pred             cceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccc
Q 037427          679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL  758 (829)
Q Consensus       679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l  758 (829)
                               .+++|+.++|. +.++..-..+|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|
T Consensus       298 ---------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          298 ---------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             ---------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             ---------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence                     23367777777 3466555667777778888877544 665666777777 78888887777765555556


Q ss_pred             ccCC-CCcEEeccCCcc
Q 037427          759 VELN-ALVVFSVAHNNL  774 (829)
Q Consensus       759 ~~l~-~L~~L~ls~N~l  774 (829)
                      ..++ .++.+.+..+.+
T Consensus       366 ~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          366 YGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCSCTTCCEEEECGGGH
T ss_pred             cCCCCCccEEEeCHHHH
Confidence            6553 556666655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=3.8e-14  Score=135.61  Aligned_cols=84  Identities=12%  Similarity=0.150  Sum_probs=56.4

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccc--cccccccCCeeecCCCcCcccCCcc----cccCCCC
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV--SFSNLNQVESLDVSHNNLNGKIPPQ----LVELNAL  764 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L  764 (829)
                      +|+.|++++|++++..|..+..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            4555666666666444444577777777777777775 4454  6777777777777777776 45553    7777777


Q ss_pred             cEEeccCCccee
Q 037427          765 VVFSVAHNNLSA  776 (829)
Q Consensus       765 ~~L~ls~N~l~g  776 (829)
                      ++||+++|.+..
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            888777776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=6.8e-13  Score=143.93  Aligned_cols=251  Identities=13%  Similarity=0.147  Sum_probs=147.9

Q ss_pred             cccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCC
Q 037427          412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGN  491 (829)
Q Consensus       412 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  491 (829)
                      ++...|.++ +|+.+.+..+ ++......|.++ +|+.+.+.. .++...+.+|.+|++|+.+++.+|+++......|. 
T Consensus       127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-  201 (401)
T 4fdw_A          127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-  201 (401)
T ss_dssp             ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-
T ss_pred             ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-
Confidence            344445554 5777776654 544444555553 566666664 44444455666666666666666666644334444 


Q ss_pred             CCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEE
Q 037427          492 LSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLD  571 (829)
Q Consensus       492 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  571 (829)
                      +.+|+.+.+..+ +......+|.++++|+.+++..+ ++                        .++..+|.+ .+|+.++
T Consensus       202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~------------------------~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS------------------------TIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC------------------------EECTTTTTT-CCCSEEE
T ss_pred             ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc------------------------Ccccccccc-CCccEEE
Confidence            456666666533 44444455666666666666543 22                        233333444 4555555


Q ss_pred             ccCCcCCCcchhhhhcCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427          572 LSYNSFSGNIPYWIERLIRLRYLILANNNLE-----GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG  646 (829)
Q Consensus       572 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  646 (829)
                      +. +.++.....+|.++++|+.+++.+|.+.     ...+.+|.++++|+.+++.+ .++..-...|.++          
T Consensus       255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c----------  322 (401)
T 4fdw_A          255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN----------  322 (401)
T ss_dssp             EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC----------
T ss_pred             eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC----------
Confidence            52 3344444555666666666666655543     34455667777777777763 3443223333332          


Q ss_pred             CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427          647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL  726 (829)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  726 (829)
                                                                 ++|+.++|..| ++..-+.+|.++ +|+.+++++|.+
T Consensus       323 -------------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          323 -------------------------------------------RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             -------------------------------------------CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             -------------------------------------------CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence                                                       26667777544 554566778888 899999999988


Q ss_pred             CCCccccccccc-cCCeeecCCCcCc
Q 037427          727 TGVIPVSFSNLN-QVESLDVSHNNLN  751 (829)
Q Consensus       727 ~~~~p~~l~~l~-~L~~LdLs~N~l~  751 (829)
                      ....+..|.+++ +++.|++..+.+.
T Consensus       358 ~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          358 PQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cccccccccCCCCCccEEEeCHHHHH
Confidence            877777787774 7888888877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=4.4e-14  Score=135.16  Aligned_cols=133  Identities=19%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  640 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  640 (829)
                      +.++++|++|++++|+++. +|......++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+.   
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP---   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT---
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC---
Confidence            5677888899999988884 354333344899999999999864  6788899999999999999865444334433   


Q ss_pred             CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc--ccccCCCCCE
Q 037427          641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP--QIGKLTNIRA  718 (829)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~  718 (829)
                                                                        +|+.|++++|+++ .+|.  .+..+++|+.
T Consensus        89 --------------------------------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           89 --------------------------------------------------DLTELILTNNSLV-ELGDLDPLASLKSLTY  117 (176)
T ss_dssp             --------------------------------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             --------------------------------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence                                                              7889999999996 5665  7899999999


Q ss_pred             EECCCCCCCCCcccc----ccccccCCeeecCCCcCc
Q 037427          719 LNFSHNNLTGVIPVS----FSNLNQVESLDVSHNNLN  751 (829)
Q Consensus       719 L~Ls~N~l~~~~p~~----l~~l~~L~~LdLs~N~l~  751 (829)
                      |++++|.++ .+|..    +..+++|+.||+++|.+.
T Consensus       118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998 45654    889999999999999876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=2.3e-16  Score=154.45  Aligned_cols=151  Identities=24%  Similarity=0.331  Sum_probs=108.9

Q ss_pred             CCccEEEccCCcCCCcchh------hhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCc
Q 037427          565 SSIVTLDLSYNSFSGNIPY------WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL  638 (829)
Q Consensus       565 ~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  638 (829)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+  
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~--   92 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA--   92 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH--
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC--
Confidence            4445555555555554444      78888888888888888875 56 7778888888888888876 444433222  


Q ss_pred             cCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCE
Q 037427          639 HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRA  718 (829)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  718 (829)
                                                                         ++|+.|++++|++++ +| .+..+++|++
T Consensus        93 ---------------------------------------------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~  119 (198)
T 1ds9_A           93 ---------------------------------------------------DTLEELWISYNQIAS-LS-GIEKLVNLRV  119 (198)
T ss_dssp             ---------------------------------------------------HHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred             ---------------------------------------------------CcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence                                                               267788888888885 45 5788888888


Q ss_pred             EECCCCCCCCCcc-ccccccccCCeeecCCCcCcccCCcc----------cccCCCCcEEeccCCcce
Q 037427          719 LNFSHNNLTGVIP-VSFSNLNQVESLDVSHNNLNGKIPPQ----------LVELNALVVFSVAHNNLS  775 (829)
Q Consensus       719 L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  775 (829)
                      |++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|++||  +|+++
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888885433 46788888888888888888776653          77788888876  66655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=1.3e-12  Score=142.41  Aligned_cols=244  Identities=11%  Similarity=0.084  Sum_probs=112.4

Q ss_pred             cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhh
Q 037427          331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGV  410 (829)
Q Consensus       331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~  410 (829)
                      -..+|.++.+|+.+.+..+ ++ .++...|.++++|+.+++..+ ++.....+|..+.+|+.+.+..+            
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~------------  127 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM------------  127 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT------------
T ss_pred             HHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc------------
Confidence            3345666667777766533 43 455555666666666666543 33333444555555544433322            


Q ss_pred             ccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccC
Q 037427          411 YFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG  490 (829)
Q Consensus       411 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~  490 (829)
                                            +.......|.++..++.......  ......+|.++++|+.+.+.++. .......|.
T Consensus       128 ----------------------l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~  182 (394)
T 4fs7_A          128 ----------------------LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFS  182 (394)
T ss_dssp             ----------------------CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred             ----------------------eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceecccccc
Confidence                                  11111222222222221111111  11222345555556666555432 213334555


Q ss_pred             CCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEE
Q 037427          491 NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL  570 (829)
Q Consensus       491 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  570 (829)
                      ++.+|+.+.+..+ ++......|.++..|+.+.+..+... .....+....|+.+.+....  ..+...+|.++..++.+
T Consensus       183 ~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~  258 (394)
T 4fs7_A          183 GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESI  258 (394)
T ss_dssp             TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEE
T ss_pred             CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeE
Confidence            5555655555444 33233345555556655555444322 11122244455555554322  12333445666666666


Q ss_pred             EccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427          571 DLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN  622 (829)
Q Consensus       571 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  622 (829)
                      .+..+... .....+..+..++.+....+.+   ....+..+.+|+.+.+..
T Consensus       259 ~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          259 SIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             EECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred             EcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence            66554322 3344455556666655554432   223455555666655543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=2.8e-12  Score=139.83  Aligned_cols=263  Identities=14%  Similarity=0.090  Sum_probs=145.2

Q ss_pred             CCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCC
Q 037427          310 STTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWH  389 (829)
Q Consensus       310 ~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  389 (829)
                      ++....+|+++.|.. .++..-..+|.++++|+.+++.++ ++ .++...|.++++|+.+.+..+ +......+|..+..
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            344567899999975 466666778999999999999765 44 566666888999998777654 33333445554433


Q ss_pred             CCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCC
Q 037427          390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS  469 (829)
Q Consensus       390 L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  469 (829)
                      ++........           .+....|.+|.+|+.+.+.++. .......|.++++|+.+.+..+ ++.....+|.++.
T Consensus       142 ~~~~~~~~~~-----------~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~  208 (394)
T 4fs7_A          142 KEITIPEGVT-----------VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI  208 (394)
T ss_dssp             SEEECCTTCC-----------EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred             cccccCcccc-----------ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence            2222211111           1233445566777777775442 2233445566666666666554 3323345566666


Q ss_pred             CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427          470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK  549 (829)
Q Consensus       470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  549 (829)
                      .|+.+.+..+...  +........+|+.+.+... ++......|..+..++.+.+..+                      
T Consensus       209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~----------------------  263 (394)
T 4fs7_A          209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN----------------------  263 (394)
T ss_dssp             TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT----------------------
T ss_pred             ccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC----------------------
Confidence            6666665544321  1222233345555554332 11122233444444544444433                      


Q ss_pred             CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427          550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS  621 (829)
Q Consensus       550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  621 (829)
                       ..  .+....|..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.
T Consensus       264 -~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          264 -KL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             -TC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             -cc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence             22  233334666666666666554322   234556667777766544 443445566666677666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=3.5e-13  Score=127.84  Aligned_cols=89  Identities=22%  Similarity=0.241  Sum_probs=83.0

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      .++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            78899999999999889999999999999999999998888889999999999999999998777789999999999999


Q ss_pred             CCcceeecC
Q 037427          771 HNNLSAAER  779 (829)
Q Consensus       771 ~N~l~g~ip  779 (829)
                      +|++++..+
T Consensus       111 ~N~~~c~c~  119 (170)
T 3g39_A          111 NNPWDCACS  119 (170)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCCCCCch
Confidence            999987654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=1e-12  Score=124.53  Aligned_cols=108  Identities=21%  Similarity=0.287  Sum_probs=81.2

Q ss_pred             CCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccc
Q 037427          591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKE  670 (829)
Q Consensus       591 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (829)
                      .+.+++++|.++ .+|..+  .++|++|+|++|+|++..|..|..+.                                 
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~---------------------------------   54 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT---------------------------------   54 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcc---------------------------------
Confidence            356667777666 455444  26677777777777766666555544                                 


Q ss_pred             cceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcC
Q 037427          671 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL  750 (829)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l  750 (829)
                                          +|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++
T Consensus        55 --------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           55 --------------------QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             --------------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             --------------------cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence                                677788888888866677778889999999999999987777888899999999999998


Q ss_pred             cccC
Q 037427          751 NGKI  754 (829)
Q Consensus       751 ~~~i  754 (829)
                      +...
T Consensus       115 ~c~c  118 (170)
T 3g39_A          115 DCAC  118 (170)
T ss_dssp             CTTB
T ss_pred             CCCc
Confidence            8654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=8.7e-13  Score=125.50  Aligned_cols=89  Identities=25%  Similarity=0.305  Sum_probs=81.5

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      .|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|..+++|+.|||++|+|++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            78899999999999889999999999999999999998777778999999999999999997766679999999999999


Q ss_pred             CCcceeecC
Q 037427          771 HNNLSAAER  779 (829)
Q Consensus       771 ~N~l~g~ip  779 (829)
                      +|++....+
T Consensus       114 ~N~~~c~~~  122 (174)
T 2r9u_A          114 NNPWDCECR  122 (174)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCcccccc
Confidence            999986543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=4.5e-15  Score=145.19  Aligned_cols=138  Identities=21%  Similarity=0.227  Sum_probs=119.6

Q ss_pred             hhcCCCCCEEEccCCcccccCCc------ccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427          585 IERLIRLRYLILANNNLEGEVPN------QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT  658 (829)
Q Consensus       585 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (829)
                      +.....++.++++.+.+++.+|.      .+..+++|++|++++|++++ +| .+..+.                     
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~---------------------   70 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME---------------------   70 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT---------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC---------------------
Confidence            55677888889999999888776      88999999999999999986 55 444433                     


Q ss_pred             ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427          659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN  738 (829)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  738 (829)
                                                      +|+.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus        71 --------------------------------~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           71 --------------------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             --------------------------------TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             --------------------------------CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence                                            8999999999999 788888889999999999999996 55 689999


Q ss_pred             cCCeeecCCCcCcccCC-cccccCCCCcEEeccCCcceeecCC
Q 037427          739 QVESLDVSHNNLNGKIP-PQLVELNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       739 ~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~ls~N~l~g~ip~  780 (829)
                      +|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999999996433 5789999999999999999998876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.3e-12  Score=122.54  Aligned_cols=106  Identities=23%  Similarity=0.308  Sum_probs=78.4

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcccccc
Q 037427          592 RYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEE  671 (829)
Q Consensus       592 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (829)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|..+.                                  
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------------   57 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV----------------------------------   57 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT----------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc----------------------------------
Confidence            56666666665 5555443  6677777777777766666555443                                  


Q ss_pred             ceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427          672 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN  751 (829)
Q Consensus       672 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  751 (829)
                                         +|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus        58 -------------------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           58 -------------------NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -------------------CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                               6777788888887666666788889999999999998776667888899999999999888


Q ss_pred             cc
Q 037427          752 GK  753 (829)
Q Consensus       752 ~~  753 (829)
                      ..
T Consensus       119 c~  120 (174)
T 2r9u_A          119 CE  120 (174)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=3e-12  Score=137.20  Aligned_cols=110  Identities=14%  Similarity=0.190  Sum_probs=91.1

Q ss_pred             eEEcCCC-cCCCCCCcccccCCCCCEEECCC-CCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccC
Q 037427          694 GVDLSCN-KLTGEIPPQIGKLTNIRALNFSH-NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAH  771 (829)
Q Consensus       694 ~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  771 (829)
                      .++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            5789988 898 5888 99999999999996 999988888999999999999999999999999999999999999999


Q ss_pred             CcceeecCCCCCCCCCCcCCCCCCccccccccCCCCCCcccchhhhcCCccccccccC
Q 037427          772 NNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC  829 (829)
Q Consensus       772 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~c~~~~  829 (829)
                      |+|++..|.....  .                      ....+++..|+|+|||++.|
T Consensus        90 N~l~~~~~~~~~~--~----------------------~L~~l~l~~N~~~c~c~l~~  123 (347)
T 2ifg_A           90 NALESLSWKTVQG--L----------------------SLQELVLSGNPLHCSCALRW  123 (347)
T ss_dssp             SCCSCCCSTTTCS--C----------------------CCCEEECCSSCCCCCGGGHH
T ss_pred             CccceeCHHHccc--C----------------------CceEEEeeCCCccCCCccHH
Confidence            9999765542110  0                      02346777888999998654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=3.4e-13  Score=144.85  Aligned_cols=87  Identities=22%  Similarity=0.146  Sum_probs=46.2

Q ss_pred             CcccEEEccCCcccCcCCcc---ccC-CCCCccEEEccCCcCCCcchhhh-hcCCCCCEEEccCCcccccCCccc-----
Q 037427          540 STIQQVHLSKNMLYGPLKYG---TFF-NRSSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQL-----  609 (829)
Q Consensus       540 ~~L~~L~L~~n~l~~~~~~~---~l~-~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l-----  609 (829)
                      +.|+.|++++|.++......   .+. ..++|++|+|++|.+++.....+ ..+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45667777777664321111   011 22567777777776654433332 234566677777776654333322     


Q ss_pred             CCCCCCCEEECcCCcCc
Q 037427          610 CGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       610 ~~l~~L~~L~Ls~N~l~  626 (829)
                      ...++|+.|+|++|.++
T Consensus       152 ~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             STTCCCCEEECCSSCCH
T ss_pred             hcCCccceeeCCCCCCC
Confidence            23456666666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.21  E-value=6.6e-10  Score=120.99  Aligned_cols=138  Identities=10%  Similarity=0.123  Sum_probs=84.9

Q ss_pred             CcCCCCCCCCCCC-CCCEEEccCCcccccCchhhhhccccccccCCCcccEEEccccc---ccccCccccccccCCcEEe
Q 037427          376 LSGPFQTPIQPHW-HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENS---LHGQLFSKKNYLRKLARLH  451 (829)
Q Consensus       376 l~~~~~~~~~~l~-~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~  451 (829)
                      ++.+...+|..+. .|+.+.+..+ ++         .+...+|.+|.+|+.+.+..|.   ++......|..+.+|+.+.
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt---------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~  120 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT---------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP  120 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC---------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee---------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence            3444456676664 5777776543 22         1455667788888888887763   5545556677777777777


Q ss_pred             cccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCC
Q 037427          452 LDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN  527 (829)
Q Consensus       452 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  527 (829)
                      +..+ ++.....+|.++.+|+.+.+..+. .......|..+.+|+.+.+..+ ++.....+|.. ..|+.+.+..+
T Consensus       121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~  192 (394)
T 4gt6_A          121 ILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK  192 (394)
T ss_dssp             GGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred             cCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence            6654 333445667777888888876542 3244456777777777777654 33233344433 45777766554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=4.6e-11  Score=127.91  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=78.1

Q ss_pred             CcceEEcCC-CcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427          691 KMYGVDLSC-NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV  769 (829)
Q Consensus       691 ~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  769 (829)
                      +|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|.++++|+.|||++|+|++..|..+..+. |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            789999996 999988889999999999999999999999999999999999999999999976666676665 999999


Q ss_pred             cCCcceee
Q 037427          770 AHNNLSAA  777 (829)
Q Consensus       770 s~N~l~g~  777 (829)
                      ++|++...
T Consensus       111 ~~N~~~c~  118 (347)
T 2ifg_A          111 SGNPLHCS  118 (347)
T ss_dssp             CSSCCCCC
T ss_pred             eCCCccCC
Confidence            99998753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.17  E-value=1.7e-09  Score=117.73  Aligned_cols=78  Identities=13%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      +|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++.++....   ..+.....|+.+.+.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence            3444444332 33233445666666666666433 554445566666666666666655431   344455566666555


Q ss_pred             CCc
Q 037427          771 HNN  773 (829)
Q Consensus       771 ~N~  773 (829)
                      .|.
T Consensus       387 ~~~  389 (394)
T 4gt6_A          387 PGS  389 (394)
T ss_dssp             ---
T ss_pred             CCC
Confidence            543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=1.5e-12  Score=139.76  Aligned_cols=187  Identities=18%  Similarity=0.130  Sum_probs=93.3

Q ss_pred             CccEEEccCCCCCCCcChhhhC-----CCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCC
Q 037427          316 QLESVSLSGSDIHATFPKFLYN-----QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHL  390 (829)
Q Consensus       316 ~L~~L~Ls~~~l~~~~p~~l~~-----~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  390 (829)
                      .|++|+|++|.++......+..     .++|++|+|++|.+.+.....+...+++|++|+|++|.++             
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-------------  139 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-------------  139 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-------------
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-------------
Confidence            4555555555554432222221     2466666666666654333333333445555555555544             


Q ss_pred             CEEEccCCcccccCchhhhhccccccccCCCcccEEEccccccccc----CccccccccCCcEEecccccCCCc----cC
Q 037427          391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ----LFSKKNYLRKLARLHLDANYFTGE----IP  462 (829)
Q Consensus       391 ~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~  462 (829)
                                 +.....+...+.    ...++|++|+|++|.++..    ++..+...++|++|+|++|.+++.    ++
T Consensus       140 -----------~~~~~~L~~~L~----~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          140 -----------PEACKDLRDLLL----HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             -----------HHHHHHHHHHHH----STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHH----hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence                       222222221110    1123566666666655432    222334456666666666666532    23


Q ss_pred             ccCCCCCCCcEEECCCCcCCCC----cccccCCCCCCCEEEccCCcccCCChhhhhCCC-----CCCEEe--CCCCcCc
Q 037427          463 KSLSNCSRLEGLYMSDNNLYGN----IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN-----YLEILD--LSENNIS  530 (829)
Q Consensus       463 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~--Ls~n~l~  530 (829)
                      ..+...++|++|+|++|.+++.    ++..+...++|++|++++|.++......+..+.     .|+.+.  +..+.+.
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            4455566777777777777643    233444567777777777777655444444331     155665  5555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.87  E-value=2.1e-07  Score=100.62  Aligned_cols=69  Identities=7%  Similarity=0.096  Sum_probs=38.8

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL  761 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l  761 (829)
                      +|+.+++.++.++..-..+|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++..-..+|.+.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            4555555555555444556666666777766543 55444556666777777766544 443333444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.87  E-value=2.8e-07  Score=99.62  Aligned_cols=126  Identities=13%  Similarity=0.167  Sum_probs=68.5

Q ss_pred             CCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccC
Q 037427          556 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN  635 (829)
Q Consensus       556 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  635 (829)
                      +...+|.++..|+.+.+..+ ++.....++.++.+|+.+.+..+ +.......|.++.+|+.+++.++.++..-..+|.+
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            33334556666666666543 44344455556666666666433 33344445666666666666655554333333333


Q ss_pred             CCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCC
Q 037427          636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTN  715 (829)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  715 (829)
                      +.                                                     +|+.++|..+ ++.+-..+|.++++
T Consensus       309 c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          309 CV-----------------------------------------------------KLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             CT-----------------------------------------------------TCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             CC-----------------------------------------------------CCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            32                                                     5566666543 44344556777777


Q ss_pred             CCEEECCCCCCCCCccccccccc
Q 037427          716 IRALNFSHNNLTGVIPVSFSNLN  738 (829)
Q Consensus       716 L~~L~Ls~N~l~~~~p~~l~~l~  738 (829)
                      |+.+.+..+ ++.+-..+|.+..
T Consensus       335 L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          335 LSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCEEEECCc-cCEEchhHhhCCC
Confidence            777777544 5544455565543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=8e-09  Score=109.75  Aligned_cols=83  Identities=11%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             CCCcceEEcCCCcCCCCCCcccc---cCCCCCEEECCCCCCCCC----ccccccccccCCeeecCCCcCcccCCccccc-
Q 037427          689 LNKMYGVDLSCNKLTGEIPPQIG---KLTNIRALNFSHNNLTGV----IPVSFSNLNQVESLDVSHNNLNGKIPPQLVE-  760 (829)
Q Consensus       689 l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~-  760 (829)
                      +++|+.|+|++|.+++..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            34667777777766543333332   467888888888888764    3444566788888888888887544334443 


Q ss_pred             CCCCcEEeccCCc
Q 037427          761 LNALVVFSVAHNN  773 (829)
Q Consensus       761 l~~L~~L~ls~N~  773 (829)
                      +  ...+++++|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3567777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=5.9e-09  Score=110.77  Aligned_cols=156  Identities=17%  Similarity=0.172  Sum_probs=83.5

Q ss_pred             cCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhh--CCCCCCEEeCCC--CcCccc--C----
Q 037427          464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFC--QLNYLEILDLSE--NNISGS--L----  533 (829)
Q Consensus       464 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~--~----  533 (829)
                      .+..+++|+.|++++|.-. .++. +. +++|+.|++..+.+.......++  .+++|+.|+|+.  |...+.  +    
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3445677777777766311 1222 32 67777777777766544333443  577788777753  221111  0    


Q ss_pred             CCC--CCCCcccEEEccCCcccCcCCcccc--CCCCCccEEEccCCcCCCcc----hhhhhcCCCCCEEEccCCcccccC
Q 037427          534 PSC--SSHSTIQQVHLSKNMLYGPLKYGTF--FNRSSIVTLDLSYNSFSGNI----PYWIERLIRLRYLILANNNLEGEV  605 (829)
Q Consensus       534 ~~~--~~~~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~  605 (829)
                      +..  ..+++|++|++.+|.+.+......+  ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++...
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            011  1356677777776666432211101  23567777777777776543    223344577777777777766433


Q ss_pred             CcccCC-CCCCCEEECcCCc
Q 037427          606 PNQLCG-LKQLRLIDLSNNN  624 (829)
Q Consensus       606 ~~~l~~-l~~L~~L~Ls~N~  624 (829)
                      -..+.. +  ...++++.++
T Consensus       324 ~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHc--CCEEEecCCc
Confidence            333322 1  2456666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.64  E-value=3.4e-09  Score=106.55  Aligned_cols=22  Identities=5%  Similarity=-0.129  Sum_probs=15.4

Q ss_pred             CCccccceEecCCCCcEEEEEc
Q 037427           54 DCCKWEGVECNTSTGRVKALYL   75 (829)
Q Consensus        54 ~~c~w~gv~c~~~~~~v~~L~L   75 (829)
                      .-|.|.|+.|++...+|..+-.
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEE
T ss_pred             HHHhcCcEEECCCCCEEEEEEe
Confidence            3589999999865456654444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=2.1e-08  Score=95.98  Aligned_cols=119  Identities=19%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             ccCCCCCcEEeCCCC-CCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--C
Q 037427           94 LTPFQQLETLHLDSN-NIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--I  166 (829)
Q Consensus        94 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~  166 (829)
                      +...+.|++|+|++| .+...........+...++|++|+|++|.+...    +...+...+.|++|+|++|.|...  .
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            455677777777777 665432222223355566777777777776543    334445556677777777766532  0


Q ss_pred             CccccccCCCCCCEEec--CCCCCCchh----hHhhhcCCCCCEEEcccccC
Q 037427          167 DVKETLDNFTNLEDLTL--DYSSLHISI----LKSIAAFTSLKRLSIQNGRV  212 (829)
Q Consensus       167 p~~~~l~~l~~L~~L~L--s~n~l~~~~----~~~l~~l~~L~~L~L~~n~l  212 (829)
                      .....+...++|++|+|  ++|.+....    .+.+...++|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            11245555666666666  666666442    23334445555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=8.6e-08  Score=91.74  Aligned_cols=92  Identities=18%  Similarity=0.156  Sum_probs=56.0

Q ss_pred             cCCCCCCCEEECCCC-CCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CCccccccCCCCCCEEecCCCCCCchh--
Q 037427          122 LSGLSKLKLLNLGRN-LFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--IDVKETLDNFTNLEDLTLDYSSLHISI--  192 (829)
Q Consensus       122 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p~~~~l~~l~~L~~L~Ls~n~l~~~~--  192 (829)
                      +...++|++|+|++| .+...    +...+...++|++|+|++|.+...  ......+...++|++|+|++|.+....  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            566778888888887 77643    344556667777777777777532  111234555566777777777776542  


Q ss_pred             --hHhhhcCCCCCEEEc--ccccCc
Q 037427          193 --LKSIAAFTSLKRLSI--QNGRVD  213 (829)
Q Consensus       193 --~~~l~~l~~L~~L~L--~~n~l~  213 (829)
                        ...+...++|++|+|  ++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCC
Confidence              334445555666666  555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=3.8e-07  Score=91.55  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=58.2

Q ss_pred             CCCcceEEcCCCcCCC--CCCcccccCCCCCEEECCCCCCCCCccccccccc--cCCeeecCCCcCcccCCc-------c
Q 037427          689 LNKMYGVDLSCNKLTG--EIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN--QVESLDVSHNNLNGKIPP-------Q  757 (829)
Q Consensus       689 l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~LdLs~N~l~~~ip~-------~  757 (829)
                      ++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5678888888888887  4556777888888888888888865  3445555  888888888888876662       3


Q ss_pred             cccCCCCcEEe
Q 037427          758 LVELNALVVFS  768 (829)
Q Consensus       758 l~~l~~L~~L~  768 (829)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            66777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.97  E-value=8.7e-06  Score=72.23  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=33.4

Q ss_pred             eEEcCCCcCC-CCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427          694 GVDLSCNKLT-GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN  751 (829)
Q Consensus       694 ~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  751 (829)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5667777765 34554332  25666666666666555555666666666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=4e-06  Score=77.82  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=17.2

Q ss_pred             CCCEEecCCCC-CCchhhHhhhcCCCCCEEEcccc
Q 037427          177 NLEDLTLDYSS-LHISILKSIAAFTSLKRLSIQNG  210 (829)
Q Consensus       177 ~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n  210 (829)
                      +|++|+|++|. ++......++.+++|++|++++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            35555555442 44444444555555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=1.2e-05  Score=74.60  Aligned_cols=34  Identities=9%  Similarity=0.160  Sum_probs=16.3

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDAN  455 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  455 (829)
                      .|+.||++++.++......+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555554443333444444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.55  E-value=5e-05  Score=71.89  Aligned_cols=91  Identities=12%  Similarity=0.138  Sum_probs=42.0

Q ss_pred             cCCCCCcEEeCCCC-CCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CC
Q 037427           95 TPFQQLETLHLDSN-NIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--ID  167 (829)
Q Consensus        95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p  167 (829)
                      ..-+.|++|+|+++ .|.........+++..-+.|++|+|++|.+...    +...+..-+.|++|+|++|.|...  ..
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33455666666654 443321111223344555566666666655432    233333445555555555555421  11


Q ss_pred             ccccccCCCCCCEEecCC
Q 037427          168 VKETLDNFTNLEDLTLDY  185 (829)
Q Consensus       168 ~~~~l~~l~~L~~L~Ls~  185 (829)
                      ..+.+..-+.|++|+|++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            123344444455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00017  Score=68.27  Aligned_cols=70  Identities=13%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             cCCCCCCCEEECCCC-CCCcc----chhhhcCCCCCCEEEcCCCcCCc--cCCccccccCCCCCCEEecCCCCCCch
Q 037427          122 LSGLSKLKLLNLGRN-LFNNS----IFSSLAGLSSLRTLSLGYNRLKG--SIDVKETLDNFTNLEDLTLDYSSLHIS  191 (829)
Q Consensus       122 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~--~~p~~~~l~~l~~L~~L~Ls~n~l~~~  191 (829)
                      +.+-+.|++|+|++| .+...    +..++..-+.|++|+|++|.|..  .....+.+..-+.|++|+|+.|.|...
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            345567777777764 65432    34455555667777777776652  112223444555666666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.82  E-value=0.0019  Score=57.00  Aligned_cols=57  Identities=25%  Similarity=0.306  Sum_probs=48.0

Q ss_pred             CEEECCCCCCC-CCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcce
Q 037427          717 RALNFSHNNLT-GVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS  775 (829)
Q Consensus       717 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  775 (829)
                      ..++.+++.++ ..+|..+.  .+|+.|||++|+|+...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 46676654  57999999999999777778899999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	829
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 58/366 (15%), Positives = 112/366 (30%), Gaps = 42/366 (11%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
            +  L      +         YL  L +++   N  T   P  L N ++L  + M++N +
Sbjct: 45  QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 482 YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQ------LNYLEILDLSENNISGSLPS 535
               P       +   +         P+             N +  +       S    S
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 536 CSSH-------STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL 588
             +        + +  +                   +++ +L  + N  S   P  I   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT- 219

Query: 589 IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP--GCLDNTSLHNNGDNVG 646
             L  L L  N L+      L  L  L  +DL+NN +    P  G    T L    + + 
Sbjct: 220 -NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276

Query: 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 706
           + +P                L    ++     ++        L  +  + L  N ++   
Sbjct: 277 NISPLAG-------------LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVV 766
           P  +  LT ++ L F++N ++     S +NL  +  L   HN ++   P  L  L  +  
Sbjct: 324 P--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 767 FSVAHN 772
             +   
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 81/427 (18%), Positives = 138/427 (32%), Gaps = 62/427 (14%)

Query: 173 DNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQEL 232
                     L  ++  ++   S      +  L      +        +G+  L +L ++
Sbjct: 19  TALAEKMKTVLGKTN--VTDTVSQTDLDQVTTLQADRLGIK-----SIDGVEYLNNLTQI 71

Query: 233 HMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLK 292
           +   N L                  +PL +LT +  + ++ NQ      L    N     
Sbjct: 72  NFSNNQLTD---------------ITPLKNLTKLVDILMNNNQIADITPLANLTN----L 112

Query: 293 VFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLK 352
                FN    + +   + T   +LE  S + SDI A        Q            L 
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172

Query: 353 GEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYF 412
                  L  + N  + +     L            +L++L  + N      P       
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKL-----------TNLESLIATNNQISDITP------- 214

Query: 413 PSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLE 472
                    NL+ L L+ N L          L  L  L L  N  +   P  LS  ++L 
Sbjct: 215 ----LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 266

Query: 473 GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGS 532
            L +  N +    P  L  L++L ++ +  N L+   P     L  L  L L  NNIS  
Sbjct: 267 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD- 321

Query: 533 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR 592
           +   SS + +Q++  + N +       +  N ++I  L   +N  S   P  +  L R+ 
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 593 YLILANN 599
            L L + 
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 3e-08
 Identities = 65/407 (15%), Positives = 120/407 (29%), Gaps = 66/407 (16%)

Query: 97  FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLS 156
             Q+ TL  D   I         + + G+  L                      +L  ++
Sbjct: 43  LDQVTTLQADRLGI---------KSIDGVEYLN---------------------NLTQIN 72

Query: 157 LGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGAL 216
              N+L         L N T L D+ ++ + +      +     +   L          L
Sbjct: 73  FSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 217 GDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQF 276
            +             +      +        L QL+     + L  L ++  L       
Sbjct: 129 KNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 277 QIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336
                +     L+ L+      N+I         T     L+ +SL+G+ +       L 
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGILT----NLDELSLNGNQL--KDIGTLA 238

Query: 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVS 396
           +  +L  +D +++ +    P   L     L+ L L  N +S               L+ +
Sbjct: 239 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 397 KNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY 456
           +                        NL YL L  N++     S  + L KL RL    N 
Sbjct: 296 QLEDI-------------SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNK 340

Query: 457 FTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASN 503
            +     SL+N + +  L    N +    P  L NL+ +  + +   
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 7e-16
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 12/265 (4%)

Query: 490 GNLSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLS--ENNISGSLPSCSSHSTIQQV 545
                +N++ ++  +L    PIP     L YL  L +    N +    P+ +  + +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605
           +++                 ++VTLD SYN+ SG +P  I  L  L  +    N + G +
Sbjct: 107 YITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPS 665
           P+      +L      + N                  D       + N        +  S
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL------SRNMLEGDASVLFGS 219

Query: 666 ILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNN 725
               ++  +          K      + G+DL  N++ G +P  + +L  + +LN S NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 726 LTGVIPVSFSNLNQVESLDVSHNNL 750
           L G IP    NL + +    ++N  
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 7e-12
 Identities = 49/290 (16%), Positives = 89/290 (30%), Gaps = 25/290 (8%)

Query: 225 RLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP 284
           +   +  L + G +L    P          I SS L +L  +  L++      +      
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP----------IPSS-LANLPYLNFLYIGGINNLVGPIPPA 96

Query: 285 FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELV 344
              L++L         +          +    L ++  S + +  T P  + +  +L  +
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 345 DFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNI 404
            F  + + G  P+     +   +++ +  N L+G                          
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 405 PLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS 464
            L         + +   +                 K    + L  L L  N   G +P+ 
Sbjct: 215 VLFGSDKNTQKIHLAKNS-----------LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFC 514
           L+    L  L +S NNL G IP   GNL   +    A+N      PL  C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 16/258 (6%)

Query: 309 HSTTPKFQLESVSLSGSDIHATF--PKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNL 366
            + T  +++ ++ LSG ++   +  P  L N   L  +     N         +     L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFN---- 422
             L + + ++SG     +     L  L  S N   G +P  I             N    
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 423 -LEYLVLSENSLHGQLFSKKNYLRKLARL---------HLDANYFTGEIPKSLSNCSRLE 472
            +     S + L   +   +N L                  +          L    +  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 473 GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGS 532
                  N       ++G   +LN + + +N + G +P    QL +L  L++S NN+ G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 533 LPSCSSHSTIQQVHLSKN 550
           +P   +         + N
Sbjct: 284 IPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 21 CLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCC--KWEGVECN--TSTGRVKALYLS 76
          C  Q++ ALL++K D   +P  L +W+     +DCC   W GV C+  T T RV  L LS
Sbjct: 3  CNPQDKQALLQIKKD-LGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 77 S 77
           
Sbjct: 59 G 59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 45/273 (16%), Positives = 75/273 (27%), Gaps = 17/273 (6%)

Query: 144 SSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTL-DYSSLHISILKSIAAFTSL 202
            +      +  L L    L     +  +L N   L  L +   ++L   I  +IA  T L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMG---------GNDLRGTLPCLYLNQLTG 253
             L I +  V GA+ D    +  L  L   +            +           N+++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 254 NISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
            I  S          + +S N+                   S    E             
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 314 KFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN 373
           +    + +    D+         N  DL      ++ + G  P   L     L +L +  
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDL-----RNNRIYGTLPQG-LTQLKFLHSLNVSF 277

Query: 374 NSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPL 406
           N+L G            D    + N      PL
Sbjct: 278 NNLCGEIPQGGNLQ-RFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 33/260 (12%)

Query: 519 LEILDLSENNISGSLP---SCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
           +  LDLS  N+    P   S ++   +  +++                 + +  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 576 SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
           + SG IP ++ ++  L  L  + N L G +P  +  L  L  I    N + G IP    +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV 695
            S                                  S+  +   ++        N     
Sbjct: 172 FSKLFT------------------------------SMTISRNRLTGKIPPTFANLNLAF 201

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
                 +       +              N              +  LD+ +N + G +P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 756 PQLVELNALVVFSVAHNNLS 775
             L +L  L   +V+ NNL 
Sbjct: 262 QGLTQLKFLHSLNVSFNNLC 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 132 NLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLD 184
           +L  N    ++   L  L  L +L++ +N L G I       N    +     
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---QGGNLQRFDVSAYA 299

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 2e-14
 Identities = 44/264 (16%), Positives = 80/264 (30%), Gaps = 12/264 (4%)

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
                + L  N +S       +   +L  L +  N                       N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG 483
           +   +   + H         L +L  LHLD        P      + L+ LY+ DN L  
Sbjct: 92  QLRSVDPATFH--------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
                  +L +L  + +  N +       F  L+ L+ L L +N ++   P         
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603
                       L         ++  L L+ N +  +          L+    +++ +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPC 262

Query: 604 EVPNQLCGLKQLRLIDLSNNNLFG 627
            +P +L G     L  L+ N+L G
Sbjct: 263 SLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 46/278 (16%), Positives = 99/278 (35%), Gaps = 16/278 (5%)

Query: 254 NISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
            + + P+    + +R+FL  N+     +   F     L +     N +     ++ +   
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 314 KFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN 373
             + +      + + +  P   +    L  +      L+   P    +    L  L L++
Sbjct: 81  LLE-QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQD 138

Query: 374 NSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL 433
           N+L        +   +L  L +  N              P     G  +L+ L+L +N +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISS---------VPERAFRGLHSLDRLLLHQNRV 189

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
                     L +L  L+L AN  +    ++L+    L+ L ++DN    +  AR    +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG 531
            L     +S+ +   +P     L   ++  L+ N++ G
Sbjct: 249 WLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 40/270 (14%), Positives = 77/270 (28%), Gaps = 16/270 (5%)

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
            IPA    +       +  N +       F     L IL L  N ++    +  +   + 
Sbjct: 29  GIPAASQRIF------LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 544 QV-HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE 602
           +   LS N     +   TF     + TL L         P     L  L+YL L +N L+
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFV 662
               +    L  L  + L  N +              +      +     +P+       
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 663 GPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFS 722
                     +         +    PL  +  + L+ N    +          ++    S
Sbjct: 203 -----LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGS 256

Query: 723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752
            + +   +P   +  +      ++ N+L G
Sbjct: 257 SSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 14/262 (5%)

Query: 517 NYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS 576
              + + L  N IS    +         +    + +   +    F   + +  LDLS N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 577 FSGNI-PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
              ++ P     L RL  L L    L+   P    GL  L+ + L +N L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 636 TSLHNNGDNVGSSAPTFNPNRRTTY--FVGPSILEKEESIMFTTKEISFSYKGKPLNKMY 693
                   N+       N         F G   L++          +      + L ++ 
Sbjct: 152 L------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLM 204

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            + L  N L+      +  L  ++ L  + N               ++    S + +   
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS 263

Query: 754 IPPQLVELNALVVFSVAHNNLS 775
           +P +L   +   +  +A N+L 
Sbjct: 264 LPQRLAGRD---LKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 7/209 (3%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
              VT           +P  I    +   + L  N +           + L ++ L +N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
           L           +L    D   ++                  L     +     +     
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL----HLDRCGLQELGPG 123

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLD 744
             + L  +  + L  N L          L N+  L    N ++ V   +F  L+ ++ L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 745 VSHNNLNGKIPPQLVELNALVVFSVAHNN 773
           +  N +    P    +L  L+   +  NN
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 24/213 (11%), Positives = 59/213 (27%), Gaps = 5/213 (2%)

Query: 615 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIM 674
            + I L  N +                     +     +    T   +   +   + + +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 675 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF 734
            +    +F      L +++ + L    L    P     L  ++ L    N L  +   +F
Sbjct: 94  RSVDPATFHG----LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 735 SNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGD 794
            +L  +  L +  N ++         L++L    +  N ++    +      +       
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 795 YQCRID-CSTMYNGEGHCKYVTAIYAPHTCICK 826
                   +         +Y+     P  C C+
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.6 bits (174), Expect = 5e-14
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 20/293 (6%)

Query: 460 EIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519
           ++PK L        L + +N +         NL +L+ +++ +N +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579
           E L LS+N +   LP     +  +       +           N+  +V L  +    SG
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLH 639
                 + + +L Y+ +A+ N+   +P  L     L  + L  N +       L   +  
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 640 NNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 699
                  +S    +            +      ++     ++          +  V L  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD------HKYIQVVYLHN 251

Query: 700 NKLTG------EIPPQIGKLTNIRALNFSHNNLT--GVIPVSFSNLNQVESLD 744
           N ++         P    K  +   ++   N +    + P +F  +    ++ 
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 6e-13
 Identities = 43/268 (16%), Positives = 80/268 (29%), Gaps = 20/268 (7%)

Query: 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNL 423
           P+ + L L+NN ++       +   +L  L +  N      P                 L
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA---------PLVKL 81

Query: 424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG 483
           E L LS+N L          L++L     +       +   L+    +E L  +     G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
                   +  L+ I +A  ++     +       L  L L  N I+    +        
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603
                       +  G+  N   +  L L+ N     +P  +     ++ + L NNN+  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 604 ------EVPNQLCGLKQLRLIDLSNNNL 625
                   P           + L +N +
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 2e-11
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 9/210 (4%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
                LDL  N  +       + L  L  LIL NN +    P     L +L  + LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
           L                 +N  +       N      V    +E   + + ++   + ++
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV----VELGTNPLKSSGIENGAF 146

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLD 744
           +G  + K+  + ++   +T  IP  +    ++  L+   N +T V   S   LN +  L 
Sbjct: 147 QG--MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 745 VSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
           +S N+++      L     L    + +N L
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 49/306 (16%), Positives = 92/306 (30%), Gaps = 35/306 (11%)

Query: 317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
              + L  + I         N  +L  +   ++ +    P         L  L L  N L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQL 91

Query: 377 SGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ 436
                 P +    L  L V +N           V       +    +  L  +     G 
Sbjct: 92  KE---LPEKMPKTLQELRVHENEITK-------VRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 437 LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLN 496
                  ++KL+ + +     T  IP+ L     L  L++  N +     A L  L++L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPL 556
            + ++ N +            +L  L L+ N +       + H  IQ V+L  N +    
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA-- 256

Query: 557 KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE--VPNQLCGLKQ 614
                          +  N F    P +  +      + L +N ++     P+    +  
Sbjct: 257 ---------------IGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 615 LRLIDL 620
              + L
Sbjct: 300 RAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 8e-08
 Identities = 46/283 (16%), Positives = 87/283 (30%), Gaps = 35/283 (12%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGY 159
              L L +N I    +         L  L  L L  N  +     + A L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 160 NRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDD 219
           N+LK   +  +       L     + + +  S+   +     ++  +          G +
Sbjct: 89  NQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----SGIE 142

Query: 220 EEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP 279
                 +  L  + +                   NI++ P     S+  L L  N+    
Sbjct: 143 NGAFQGMKKLSYIRIADT----------------NITTIPQGLPPSLTELHLDGNKITKV 186

Query: 280 FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339
            +      L+ L      FN I      S + TP   L  + L+ + +    P  L +  
Sbjct: 187 DA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTP--HLRELHLNNNKLV-KVPGGLADHK 242

Query: 340 DLELVDFSDSNLKGEFPNW-----LLKNNPNLSTLVLRNNSLS 377
            +++V   ++N+     N            + S + L +N + 
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 57/327 (17%), Positives = 96/327 (29%), Gaps = 50/327 (15%)

Query: 254 NISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTP 313
            +   P         L L  N+       + F NL  L                      
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGD-FKNLKNLHTL------------------- 60

Query: 314 KFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN 373
                   L  + I    P        LE +  S + LK E P  + K    L       
Sbjct: 61  -------ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 112

Query: 374 NSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL 433
             +       +     ++ L  +     G                G   L Y+ +++ ++
Sbjct: 113 TKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ---------GMKKLSYIRIADTNI 162

Query: 434 HGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493
                  +     L  LHLD N  T     SL   + L  L +S N++       L N  
Sbjct: 163 T---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG-------SLPSCSSHSTIQQVH 546
            L ++ + +N L   +P       Y++++ L  NNIS             +  ++   V 
Sbjct: 220 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

Query: 547 LSKNML-YGPLKYGTFFNRSSIVTLDL 572
           L  N + Y  ++  TF        + L
Sbjct: 279 LFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 47/284 (16%), Positives = 80/284 (28%), Gaps = 30/284 (10%)

Query: 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209
                L L  N++    D      N  NL  L L  + +      + A    L+RL +  
Sbjct: 31  PDTALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERL 269
            +                 L+EL          L     N++T    S        I   
Sbjct: 89  NQ-----------------LKELPEKMPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVE 130

Query: 270 FLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHA 329
             +            F  + KL         I   P+          L  + L G+ I  
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-----SLTELHLDGNKITK 185

Query: 330 TFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWH 389
                L   ++L  +  S +++        L N P+L  L L NN L          H +
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLAD-HKY 243

Query: 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSL 433
           +  +++  N       +    + P        +   + L  N +
Sbjct: 244 IQVVYLHNNNISA---IGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
            V  S   L  ++P  +    +   L+  +N +T +    F NL  + +L + +N ++  
Sbjct: 14  VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 754 IPPQLVELNALVVFSVAHNNLS 775
            P     L  L    ++ N L 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLK 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 21/102 (20%), Positives = 36/102 (35%)

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
           DL  NK+T         L N+  L   +N ++ + P +F+ L ++E L +S N L     
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96

Query: 756 PQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQC 797
                L  L V       +  +  N     +         + 
Sbjct: 97  KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 12/212 (5%)

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
             +S + ++    + +  +P  + +      L L+ N L       L    +L  ++L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 623 NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISF 682
             L               +  +    +            V      +  S+         
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL------- 117

Query: 683 SYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVES 742
               + L ++  + L  N+L    P  +     +  L+ ++NNLT +     + L  +++
Sbjct: 118 -GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 743 LDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774
           L +  N+L   IP      + L    +  N  
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 28/187 (14%), Positives = 42/187 (22%), Gaps = 9/187 (4%)

Query: 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624
                L LS N         +    RL  L L                    L  L   +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-------ELTKLQVDGTLPVLGTLD 83

Query: 625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684
           L       L           V   +     +       G   L++        K +    
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLD 744
                        + N LT      +  L N+  L    N+L   IP  F   + +    
Sbjct: 144 LTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 745 VSHNNLN 751
           +  N   
Sbjct: 202 LHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 45/244 (18%), Positives = 75/244 (30%), Gaps = 9/244 (3%)

Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
           +   L LSEN L+    +      +L +L+LD    T            + G     +N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQ 88

Query: 482 YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHST 541
             ++P     L +L  + ++ N L          L  L+ L L  N +    P   + + 
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNL 601
             +     N     L  G      ++ TL L  NS    IP        L +  L  N  
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 602 EGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYF 661
                   C +   R     N          +D  ++ +N  +V        P  +    
Sbjct: 208 LCN-----CEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGK 262

Query: 662 VGPS 665
             P+
Sbjct: 263 GCPT 266

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 18/139 (12%), Positives = 32/139 (23%), Gaps = 7/139 (5%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           V+     LT  +PP + K  +   L+ S N L      +     ++  L++    L    
Sbjct: 15  VNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 755 P----PQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGH 810
                P L  L+       +   L           +            +           
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 811 CKYVTAIYAPHTCICKYKC 829
                    P       K 
Sbjct: 132 KGNELKTLPPGLLTPTPKL 150

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 39/214 (18%), Positives = 62/214 (28%), Gaps = 16/214 (7%)

Query: 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVS 396
                  V+    NL    P  L     + + L L  N L       + P+  L  L++ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 397 KNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY 456
                                 G   +   +   ++    L      L  L  L +  N 
Sbjct: 64  ------------RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 457 FTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQL 516
            T     +L     L+ LY+  N L    P  L     L  + +A+N+L          L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 517 NYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
             L+ L L EN++            +    L  N
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 12/139 (8%), Positives = 33/139 (23%), Gaps = 5/139 (3%)

Query: 696 DLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGV----IPVSFSNLNQVESLDVSHNNL 750
           D+ C +L+     ++   L   + +      LT      I  +      +  L++  N L
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 751 NGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGH 810
                  +++        +   +L           + +         +    +       
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127

Query: 811 CKYVTAIYAPHTCICKYKC 829
              +             K 
Sbjct: 128 GLQLLCEGLLDPQCRLEKL 146

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 54/434 (12%), Positives = 89/434 (20%), Gaps = 28/434 (6%)

Query: 91  ASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGL- 149
           A LL   QQ + + LD   +           L     L  LNL  N   +     +    
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 150 ----SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRL 205
                 ++ LSL    L G+     +    T      L  S   +           L   
Sbjct: 80  QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 139

Query: 206 SIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTS 265
             +  ++           C                              +          
Sbjct: 140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 199

Query: 266 IERLFLSYNQFQIPFSLEPFFNLSKLK---VFSGEFNEIYVEPESSHSTTPKFQLESVSL 322
           +E L L           +    ++        +   N++     +            +  
Sbjct: 200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 259

Query: 323 SGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT 382
                     K   +   +     S   L         +    L   +L           
Sbjct: 260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 319

Query: 383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCF-----------NLEYLVLSEN 431
                      H S    Q    LE+ +        G              L  L L++ 
Sbjct: 320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 379

Query: 432 SLHGQ----LFSKKNYLRKLARLHLDANYFTGEIPKSLS-----NCSRLEGLYMSDNNLY 482
            +       L +       L  L L  N         L          LE L + D    
Sbjct: 380 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439

Query: 483 GNIPARLGNLSSLN 496
             +  RL  L    
Sbjct: 440 EEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 46/458 (10%), Positives = 113/458 (24%), Gaps = 25/458 (5%)

Query: 317 LESVSLSGSDI-HATFPKFLYNQHDLELVDFSDSNLKGEFPNWL---LKNNPNLSTLVLR 372
           ++S+ +   ++  A + + L      ++V   D  L       +   L+ NP L+ L LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 373 NNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENS 432
           +N L       +       +  + K   Q       G    S        L+ L LS+N 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 433 LHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNL 492
           L               +  L+          + S       L    +     +     N 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 493 SSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNML 552
           + +  +          +     +   +   +  +     +  +      +    L    +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 553 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612
                     +              +         L     L   +              
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR-- 301

Query: 613 KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEES 672
                           +       SL     +  ++  +   +          +      
Sbjct: 302 ----------LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 351

Query: 673 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE----IPPQIGKLTNIRALNFSHNNLTG 728
           +            G+P + +  + L+   ++      +   +    ++R L+ S+N L  
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 729 VIPVSFS-----NLNQVESLDVSHNNLNGKIPPQLVEL 761
              +            +E L +     + ++  +L  L
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 50/481 (10%), Positives = 119/481 (24%), Gaps = 47/481 (9%)

Query: 128 LKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRL--KGSIDVKETLDNFTNLEDLTLD 184
           ++ L++     +++ ++ L   L   + + L    L      D+   L     L +L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 185 YSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244
            + L    +  +          IQ   +                L+ L            
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT---------- 113

Query: 245 CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE 304
                    +            E L     + +         + +  +  +         
Sbjct: 114 --LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP 364
            E + S     +     L      +             +   +  +L G   +       
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 365 NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLE 424
            L +  L +  ++      + P   L  L + +         ++     +  ++   +L 
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 425 YLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS---------RLEGLY 475
              L +        +      +L  L + +  FT       S+           ++    
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 351

Query: 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQG----PIPLEFCQLNYLEILDLSENNISG 531
           + D  +           S L  + +A   +       +       + L  LDLS N +  
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 532 SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRL 591
           +       S  Q                       +  L L    +S  +   ++ L + 
Sbjct: 412 AGILQLVESVRQ-------------------PGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

Query: 592 R 592
           +
Sbjct: 453 K 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 59/500 (11%), Positives = 114/500 (22%), Gaps = 57/500 (11%)

Query: 151 SLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNG 210
            +++L +    L       E L      + + LD   L  +  K I+             
Sbjct: 3   DIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS------------- 48

Query: 211 RVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLF 270
                       L     L EL++  N+L        L  L              I++L 
Sbjct: 49  ----------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTP--------SCKIQKLS 90

Query: 271 LSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHAT 330
           L                L  L           +  ++      +            +   
Sbjct: 91  LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL----------LDPQ 140

Query: 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHL 390
                       L   S   L              +S   +    +    Q        L
Sbjct: 141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 200

Query: 391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARL 450
           +AL +       +   ++     S  ++    L    L +  +        +   +L  L
Sbjct: 201 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 260

Query: 451 HLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP 510
            +     T +    L    R +      +     +      L     +          + 
Sbjct: 261 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320

Query: 511 LEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 570
                              S    +          +  ++     L  G     S +  L
Sbjct: 321 SCSFTAACCSH------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 374

Query: 571 DLSYNSFSGN----IPYWIERLIRLRYLILANNNLEGEVPNQLC-GLKQ----LRLIDLS 621
            L+    S +    +   +     LR L L+NN L      QL   ++Q    L  + L 
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434

Query: 622 NNNLFGQIPGCLDNTSLHNN 641
           +     ++   L        
Sbjct: 435 DIYWSEEMEDRLQALEKDKP 454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 47/429 (10%), Positives = 100/429 (23%), Gaps = 20/429 (4%)

Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPI----QPHWHLDALHV 395
           D++ +D     L       LL        + L +  L+      I    + +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 396 SKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDAN 455
             N         +       L      ++ L L    L G      +   +   L     
Sbjct: 63  RSNELGDVGVHCVL----QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQE 116

Query: 456 YFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQ 515
               +     +    L    +        +     +LS+ +   +AS     P   E   
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 516 LNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575
            N             G   S      ++               G   +++S+  L L  N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 576 SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635
                    +   +      L    +                          +    L  
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL------CRVLRAKESLKELSL 290

Query: 636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV 695
                  +       T          +         +       +    +     ++   
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 350

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV----IPVSFSNLNQVESLDVSHNNLN 751
            L    +           + +R L  +  +++      +  +    + +  LD+S+N L 
Sbjct: 351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 752 GKIPPQLVE 760
                QLVE
Sbjct: 411 DAGILQLVE 419

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 100 LETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNN----SIFSSLAGLSSLRTL 155
           +++L +    ++   +    E L  L + +++ L            I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 156 SLGYNRLKGS 165
           +L  N L   
Sbjct: 61  NLRSNELGDV 70

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 28/202 (13%), Positives = 68/202 (33%), Gaps = 21/202 (10%)

Query: 435 GQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSS 494
            Q+FS      +  + +L     T  +  + +  + ++ +  +++++       +  L +
Sbjct: 15  KQIFSDDA-FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPN 69

Query: 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYG 554
           +  + +  N L    PL   +      LD ++     SL       ++   H   + + G
Sbjct: 70  VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 555 PLKYGTFFNRSSIVTLDLSYNSFSGNIPYW--------------IERLIRLRYLILANNN 600
            +      +              S                    +  L +L+ L L+ N+
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 601 LEGEVPNQLCGLKQLRLIDLSN 622
           +       L GLK L +++L +
Sbjct: 190 ISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 19/194 (9%), Positives = 57/194 (29%), Gaps = 17/194 (8%)

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
             +  +  +L   S +  +      L  +  +I  N++++      +  L  +  + L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 623 NNLFGQ----------IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEES 672
           N L                  +N     +         + +        +   +   +  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 673 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV 732
            ++                        +    +I P +  LT ++ L  S N+++ +   
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195

Query: 733 SFSNLNQVESLDVS 746
             + L  ++ L++ 
Sbjct: 196 -LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 28/195 (14%)

Query: 123 SGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLT 182
              ++    NL +    +++  +   L+S+  +    + +K        +    N+  L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLF 74

Query: 183 LDYSSL---------------HISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLG 227
           L+ + L                +   K     +      +++  ++     D  GL  L 
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 228 HLQELHMGGNDLRGTLPCLYLNQLTGNI-------SSSPLIHLTSIERLFLSYNQFQIPF 280
            L+ L++G N +        L +L              PL  LT ++ L+LS N      
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 194

Query: 281 SLEPFFNLSKLKVFS 295
           +L    NL  L++FS
Sbjct: 195 ALAGLKNLDVLELFS 209

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 25/284 (8%)

Query: 368 TLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLV 427
           TL L   +L       +     + A    ++F    +                F ++++ 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAE----------HFSPFRVQHMD 52

Query: 428 LSENSLHG-QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP 486
           LS + +    L    +   KL  L L+    +  I  +L+  S L  L +S  + +    
Sbjct: 53  LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

Query: 487 AR-----LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE----NNISGSLPSCS 537
            +        L  LN         +            +  L+LS        S       
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 538 SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY-NSFSGNIPYWIERLIRLRYLIL 596
               +  + LS +++     +  FF  + +  L LS            +  +  L+ L +
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 597 ANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640
                +G +      L  L+   ++ ++        + N     
Sbjct: 233 FGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 3/136 (2%)

Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
           +DL+   L  ++  ++     + A     + +   +   FS   +V+ +D+S++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 755 PPQLVE-LNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKY 813
              ++   + L   S+    LS    N           N           +      C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 814 VTAIYAPHTCICKYKC 829
           +  +          K 
Sbjct: 123 LDELNLSWCFDFTEKH 138

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 59/331 (17%), Positives = 102/331 (30%), Gaps = 21/331 (6%)

Query: 440 KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499
           +    R+   L L+    +  +P+   +   LE L  S N+L   +P    +L SL    
Sbjct: 33  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELPQSLKSLLVDN 87

Query: 500 ---MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPL 556
               A + L   +       N LE L   +N+    +    ++S  +   L  ++ +   
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 557 KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLR 616
                     +  L      ++ N        + L    +   N   E   +L  L  L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 617 LIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT 676
            I   NN L           +L+   + +                        E      
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 677 TKEIS---FSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVS 733
               S             +  +++S NKL  E+P    +L     L  S N+L   +P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAE-VPEL 322

Query: 734 FSNLNQVESLDVSHNNLNG--KIPPQLVELN 762
             NL   + L V +N L     IP  + +L 
Sbjct: 323 PQNL---KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 48/314 (15%), Positives = 90/314 (28%), Gaps = 19/314 (6%)

Query: 468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN 527
             +   L +++  L  ++P    +L SL     + N L   +P     L  L + + +  
Sbjct: 37  DRQAHELELNNLGL-SSLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 528 NISGSLPSCSSHSTIQQVHLSKNMLYG------PLKYGTFFNRSSIVTLDLSYNSFSGNI 581
            +S   P                 L                 +   +   L + +   N 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN 641
              +  L  L +L     +           L    ++  +N          L   +    
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701
            +N+  + P   P+          + +  E     T           L+++       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761
            + EI        ++  LN S+N L   +P     L   E L  S N+L  ++P      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPE---LP 323

Query: 762 NALVVFSVAHNNLS 775
             L    V +N L 
Sbjct: 324 QNLKQLHVEYNPLR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 44/305 (14%), Positives = 93/305 (30%), Gaps = 14/305 (4%)

Query: 341 LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG--PFQTPIQPHWHLDALHVSKN 398
              ++ ++  L    P       P+L +LV   NSL+        ++     +    + +
Sbjct: 40  AHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 399 FFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT 458
                +                 N  +L + +   +  L    +    L  +    N   
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 459 GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
                             +      ++P  L ++ + N+I+     LQ    L     + 
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
             +  L +   S    +   +       L +++ +  +    F   S +       N+ S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 579 GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL--FGQIPGCLDNT 636
             I    +    L  L ++NN L  E+P     L++L     S N+L    ++P  L   
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPELPQNLKQL 329

Query: 637 SLHNN 641
            +  N
Sbjct: 330 HVEYN 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 44/336 (13%), Positives = 93/336 (27%), Gaps = 39/336 (11%)

Query: 314 KFQLESVSLSGSDIHA----TFPKFLYNQHDLELVDFSDSNLKGEFPNWL---LKNNPNL 366
           +F +E  SL    I      +    L     ++ +  S + +  E   WL   + +  +L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYL 426
                 +           +    L    +           +      +   +  F  ++ 
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 427 VLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP 486
            L    LH      +          +        + K   N   L  +    N L     
Sbjct: 122 PLEHLYLHNNGLGPQAGA------KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 175

Query: 487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD--------------LSENNISGS 532
                    + ++     +Q  I  E  +   LE L                +    S  
Sbjct: 176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235

Query: 533 LPSCSSHSTIQQVHLSKNMLYGP-----LKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-- 585
             +  S   ++++ L+  +L        +   +      + TL L YN    +    +  
Sbjct: 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 586 ---ERLIRLRYLILANNNL--EGEVPNQLCGLKQLR 616
              E++  L +L L  N    E +V +++  +   R
Sbjct: 296 VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580
           +L L+  +++  L        +  + LS N L              +  L  S N+    
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENV 58

Query: 581 IPYWIERLIRLRYLILANNNLEG-EVPNQLCGLKQLRLIDLSNNNL 625
                    RL+ L+L NN L+       L    +L L++L  N+L
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 474 LYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL 533
           L+++  +L   +   L  L  +  + ++ N L+   P     L  LE+L  + +N   ++
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-ASDNALENV 58

Query: 534 PSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRL 591
              ++   +Q++ L  N L          +   +V L+L  NS         ERL  +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYG 559
           +A   L     LE  QL  +  LDLS N +    P+ ++    + + + +          
Sbjct: 5   LAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAAL---RCLEVLQASDNALENVD 59

Query: 560 TFFNRSSIVTLDLSYNSF-SGNIPYWIERLIRLRYLILANNNLEGE 604
              N   +  L L  N          +    RL  L L  N+L  E
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 24/109 (22%)

Query: 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV---------------------SF 734
            L+   LT  +   + +L  +  L+ SHN L  + P                        
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 735 SNLNQVESLDVSHNNLNG-KIPPQLVELNALVVFSVAHNNLSAAERNPG 782
           +NL +++ L + +N L        LV    LV+ ++  N+L   E    
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 17/218 (7%)

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
             ++ + +    ++ +  +      L  +  L      +       +  L  L  ++L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 623 N---------NLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESI 673
           N         NL       L    L N     G  +        T       +       
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 674 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVS 733
           +        +             LS           +  L+ +  L    N ++ + P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 734 FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAH 771
            ++L  +  + + +N ++   P  L   + L + ++ +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 28/211 (13%), Positives = 68/211 (32%), Gaps = 18/211 (8%)

Query: 546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605
              K+ +   +   T  +   I TL       +  I   ++ L  L  L L +N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA 79

Query: 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPS 665
           P +         +  +       I G     +L      +    P    +     ++  +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 666 ILEKEESIMFTTKEISFSYKGKPL---------NKMYGVDLSCNKLTGEIPPQIGKLTNI 716
            +     +   T     S     +         +K+  +    NK++   P  +  L N+
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 717 RALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
             ++  +N ++ V P   +N + +  + +++
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 20/218 (9%)

Query: 346 FSDSNLKGEFPNWLLKNN----------PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV 395
           F D  L         K+N            ++TL      ++      +Q   +L  L +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 396 SKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA- 454
             N      PL+           G        ++       L      +  +  L   + 
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 455 ----NYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP 510
                    +I             Y+S  N   +    L NLS L  +    N +    P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 511 LEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548
                L  L  + L  N IS  +   ++ S +  V L+
Sbjct: 191 --LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 26/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 428 LSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA 487
           +++ +    +F     L    ++    +  T  +  + ++   +  L      +   I  
Sbjct: 3   ITQPTAINVIFPDPA-LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG 58

Query: 488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL 547
            +  L++L  + +  N +    PL+         L  +      ++    S  T+     
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY--------------WIERLIRLRY 593
               +               +    + +  +G                   +  L +L  
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 594 LILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP 630
           L   +N +    P  L  L  L  + L NN +    P
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 3/136 (2%)

Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753
                 +K+T EIP  +    N   L F    L  +   +FS    +E +++S N++   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 754 IPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKY 813
           I   +      +         +    NP  +                       + H   
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 814 VTAIYAPHTCICKYKC 829
              +            
Sbjct: 129 KVLLDIQDNINIHTIE 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 420 CFNLEYLVLSENSLH-GQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSD 478
            ++     L    L        +N    L R     +     +     N   L  L +S+
Sbjct: 19  RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR----SSMAATLRIIEENIPELLSLNLSN 74

Query: 479 NNLYG--NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC 536
           N LY   ++ + +    +L  + ++ N L+    L+  +   LE L L  N++S +    
Sbjct: 75  NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

Query: 537 SS 538
           S+
Sbjct: 135 ST 136

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 701 KLTGEI---PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG-KIPP 756
           KLT E+     Q       R L+     +  VI    + L+Q +++D S N +      P
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 757 QLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTA 816
            L  L  L+V +     +        P          +    +             Y+  
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDL-TELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 817 IYAPHTCICKYK 828
           +  P T    Y+
Sbjct: 120 LRNPVTNKKHYR 131

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 4/135 (2%)

Query: 588 LIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGS 647
            +R R L L    +   + N    L Q   ID S+N +  ++ G      L     N   
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNR 74

Query: 648 SAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 707
                    +    +   IL     +      +      K L  +  +            
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 708 PQIGKLTNIRALNFS 722
             I K+  +R L+F 
Sbjct: 133 YVIYKVPQVRVLDFQ 147

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 19/192 (9%)

Query: 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622
             +  +   L   + +  +      L ++  L      ++    + +  L  L  I+ SN
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71

Query: 623 NNLFGQIP-----------GCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEE 671
           N L    P              +  +      N+ +       N + T       L    
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 672 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP 731
            +  ++  IS       L  +  ++ S N++T   P  +  LT +  L+ S N ++ +  
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

Query: 732 VSFSNLNQVESL 743
              + L  +ESL
Sbjct: 190 --LAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	829
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8.5e-38  Score=329.47  Aligned_cols=294  Identities=25%  Similarity=0.374  Sum_probs=168.9

Q ss_pred             CChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCcc--ccceEecCC--CCcEEEEEcCCCcccccccccccCccccc
Q 037427           20 GCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCK--WEGVECNTS--TGRVKALYLSSKRQFLYSTAGQLNASLLT   95 (829)
Q Consensus        20 ~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~--w~gv~c~~~--~~~v~~L~L~~~~~~~~~~~~~~~~~~l~   95 (829)
                      -|.++||+||++||+++.++. .+++|.   .++|||.  |+||+|++.  .+||++|||+++++   .|...++ ..  
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l---~g~~~lp-~~--   71 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL---PKPYPIP-SS--   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC---SSCEECC-GG--
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCC---CCCCCCC-hH--
Confidence            599999999999999998654 689996   4679994  999999864  34899999988765   2222121 23  


Q ss_pred             CCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCC-CCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427           96 PFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGR-NLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN  174 (829)
Q Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~  174 (829)
                                                ++++++|++|+|++ |.++|.+|..|++|++|++|+|++|++.+..+  ..+..
T Consensus        72 --------------------------l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~--~~~~~  123 (313)
T d1ogqa_          72 --------------------------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--DFLSQ  123 (313)
T ss_dssp             --------------------------GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC--GGGGG
T ss_pred             --------------------------HhcCccccccccccccccccccccccccccccchhhhcccccccccc--ccccc
Confidence                                      44555555555543 44555555555555555555555555554444  44555


Q ss_pred             CCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC-cEEECCCccCccccC-CccCcccc
Q 037427          175 FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL-QELHMGGNDLRGTLP-CLYLNQLT  252 (829)
Q Consensus       175 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L-~~L~L~~n~l~g~~p-~l~~~~~~  252 (829)
                      +.+|+++++++|.+.+.+|..+++++.|+++++++|.+.+.+|.   .+..+..+ +.+++++|+++|..| .+      
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~---~~~~l~~l~~~l~~~~n~l~~~~~~~~------  194 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIPPTF------  194 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECCGGG------
T ss_pred             hhhhcccccccccccccCchhhccCcccceeecccccccccccc---ccccccccccccccccccccccccccc------
Confidence            55555555555555555555555555555555555555555554   34444443 555555555555444 22      


Q ss_pred             cccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcC
Q 037427          253 GNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFP  332 (829)
Q Consensus       253 g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p  332 (829)
                              ..+. ...++++.+...+.++. .+..+++++.++++.+.                          +.+.+|
T Consensus       195 --------~~l~-~~~l~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~--------------------------l~~~~~  238 (313)
T d1ogqa_         195 --------ANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNS--------------------------LAFDLG  238 (313)
T ss_dssp             --------GGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSE--------------------------ECCBGG
T ss_pred             --------cccc-ccccccccccccccccc-ccccccccccccccccc--------------------------cccccc
Confidence                    2222 23455555555444332 23333333333333332                          222222


Q ss_pred             hhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCc
Q 037427          333 KFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF  399 (829)
Q Consensus       333 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  399 (829)
                       .+..+++|+.|++++|+++|.+|.+ ++++++|++|+|++|+++|.+| .+..+.+|+.+++++|+
T Consensus       239 -~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         239 -KVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -GCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             -ccccccccccccCccCeecccCChH-HhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence             2444556666666666666666665 4566666666666666666555 34556666666676665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.4e-30  Score=273.82  Aligned_cols=251  Identities=29%  Similarity=0.454  Sum_probs=177.4

Q ss_pred             CCcEEECCCCcCCC--CcccccCCCCCCCEEEccC-CcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEE
Q 037427          470 RLEGLYMSDNNLYG--NIPARLGNLSSLNDIMMAS-NHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQV  545 (829)
Q Consensus       470 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L  545 (829)
                      +++.|++++|.+.+  .+|..++++++|++|++++ |+++|.+|..|+++++|++|++++|++.+..+..+ ....|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45555555555554  2455555666666666654 55555566666666666666666666655444433 45555555


Q ss_pred             EccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCC-CEEEccCCcccccCCcccCCCCCCCEEECcCCc
Q 037427          546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRL-RYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN  624 (829)
Q Consensus       546 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  624 (829)
                      +++.|.+.+.+|.. +.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++.
T Consensus       131 ~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             ccccccccccCchh-hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            55555555566655 7777788888888888877777777777665 778888888887777777766544 68888888


Q ss_pred             CccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC
Q 037427          625 LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG  704 (829)
Q Consensus       625 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  704 (829)
                      ..|.+|..+....                                                     +++.+++++|.+++
T Consensus       209 ~~~~~~~~~~~~~-----------------------------------------------------~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         209 LEGDASVLFGSDK-----------------------------------------------------NTQKIHLAKNSLAF  235 (313)
T ss_dssp             EEECCGGGCCTTS-----------------------------------------------------CCSEEECCSSEECC
T ss_pred             ccccccccccccc-----------------------------------------------------cccccccccccccc
Confidence            7777766554443                                                     67788888888886


Q ss_pred             CCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCc-ceee
Q 037427          705 EIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN-LSAA  777 (829)
Q Consensus       705 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~  777 (829)
                      .+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+|+|.+|+ +.++++|+.+++++|+ ++|.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            655 578888889999999999888888888889999999999999888885 5778888888888887 5654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5e-26  Score=246.49  Aligned_cols=338  Identities=22%  Similarity=0.323  Sum_probs=191.8

Q ss_pred             ccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEcc
Q 037427          317 LESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVS  396 (829)
Q Consensus       317 L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  396 (829)
                      |++|+++++.++..  +.+..+++|++|++++|+++ .+|+  ++++++|++|++++|.+.+..  .+..+++|+.|+++
T Consensus        46 l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~  118 (384)
T d2omza2          46 VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  118 (384)
T ss_dssp             CCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccccccc
Confidence            44444444444332  23555666666666666666 3443  556666666666666666532  25556666666666


Q ss_pred             CCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEEC
Q 037427          397 KNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYM  476 (829)
Q Consensus       397 ~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  476 (829)
                      ++.+++..+..           ....+.......|.+......................     ....+...+.......
T Consensus       119 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  182 (384)
T d2omza2         119 NNQITDIDPLK-----------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDI  182 (384)
T ss_dssp             SSCCCCCGGGT-----------TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEEC
T ss_pred             ccccccccccc-----------ccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccc
Confidence            66555322111           1123444444444443222211111111111111110     1112223333333444


Q ss_pred             CCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcC
Q 037427          477 SDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPL  556 (829)
Q Consensus       477 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~  556 (829)
                      ..|...  ....+..+++++.+++++|.+++..|  +...+                       +|++|++++|.+.. +
T Consensus       183 ~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~-----------------------~L~~L~l~~n~l~~-~  234 (384)
T d2omza2         183 SSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILT-----------------------NLDELSLNGNQLKD-I  234 (384)
T ss_dssp             CSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCT-----------------------TCCEEECCSSCCCC-C
T ss_pred             cccccc--cccccccccccceeeccCCccCCCCc--ccccC-----------------------CCCEEECCCCCCCC-c
Confidence            433332  12233344444455555444443322  22334                       44444444444432 2


Q ss_pred             CccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCC
Q 037427          557 KYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNT  636 (829)
Q Consensus       557 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~  636 (829)
                      +  .+..+++|+.|++++|++++..+  +..+++|++|++++|++++..  .+..++.++.+++++|.+++..  .+.  
T Consensus       235 ~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~--  304 (384)
T d2omza2         235 G--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS--  304 (384)
T ss_dssp             G--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG--
T ss_pred             c--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccc--
Confidence            2  15667777788888887776543  666778888888888876433  3667778888888888776421  111  


Q ss_pred             CccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCC
Q 037427          637 SLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNI  716 (829)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  716 (829)
                                                                         .++.++.|++++|++++..  .+..+++|
T Consensus       305 ---------------------------------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L  331 (384)
T d2omza2         305 ---------------------------------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKL  331 (384)
T ss_dssp             ---------------------------------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred             ---------------------------------------------------hhcccCeEECCCCCCCCCc--ccccCCCC
Confidence                                                               2336778888888888643  37888999


Q ss_pred             CEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCC
Q 037427          717 RALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN  772 (829)
Q Consensus       717 ~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  772 (829)
                      ++|++++|++++ +| .++++++|++||+++|++++.+|  +.++++|+.|++++|
T Consensus       332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999999885 33 68888999999999999987654  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=7.1e-26  Score=245.26  Aligned_cols=328  Identities=22%  Similarity=0.259  Sum_probs=208.4

Q ss_pred             CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427          337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL  416 (829)
Q Consensus       337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~  416 (829)
                      .+.+|++|+++++.++ .+..  ++.+++|++|++++|++++..  .+..++                            
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~g--l~~L~nL~~L~Ls~N~l~~l~--~l~~L~----------------------------   88 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT--PLKNLT----------------------------   88 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCT----------------------------
T ss_pred             HhCCCCEEECCCCCCC-Cccc--cccCCCCCEEeCcCCcCCCCc--cccCCc----------------------------
Confidence            3445556666665555 2322  345555555555555555432  244444                            


Q ss_pred             ccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCC
Q 037427          417 AMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLN  496 (829)
Q Consensus       417 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  496 (829)
                           +|++|++++|.+.+..  .+..+++|+.|+++++.+++..+  ......+.......|.+....+..........
T Consensus        89 -----~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  159 (384)
T d2omza2          89 -----KLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQL  159 (384)
T ss_dssp             -----TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred             -----cccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence                 4555555555544322  24455556666666555554322  22334555555555554432222211111111


Q ss_pred             EEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCc
Q 037427          497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS  576 (829)
Q Consensus       497 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~  576 (829)
                      ......     .....+.............|... .......+++++.+++++|.+.+..+   +..+++|++|++++|+
T Consensus       160 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~  230 (384)
T d2omza2         160 SFGNQV-----TDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQ  230 (384)
T ss_dssp             EEEESC-----CCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSC
T ss_pred             cccccc-----chhhhhccccccccccccccccc-cccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCC
Confidence            111111     11122334444445555554433 12222355666777777776655443   4567899999999999


Q ss_pred             CCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCC
Q 037427          577 FSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNR  656 (829)
Q Consensus       577 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (829)
                      +++.  ..+..+++|+.|++++|++++..+  +..+++|++|++++|++++..|  +.                      
T Consensus       231 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~----------------------  282 (384)
T d2omza2         231 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA----------------------  282 (384)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT----------------------
T ss_pred             CCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--cc----------------------
Confidence            9853  357889999999999999986543  7889999999999999875432  11                      


Q ss_pred             ccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccc
Q 037427          657 RTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSN  736 (829)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  736 (829)
                                                     .++.++.++++.|++++  +..+..+++++.|++++|++++..|  +..
T Consensus       283 -------------------------------~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~  327 (384)
T d2omza2         283 -------------------------------GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSS  327 (384)
T ss_dssp             -------------------------------TCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             -------------------------------ccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--ccc
Confidence                                           12367889999999985  3458899999999999999997643  889


Q ss_pred             cccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCC
Q 037427          737 LNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       737 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  780 (829)
                      +++|++|++++|++++ +| .+.++++|++|++++|++++.+|-
T Consensus       328 l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~l  369 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTPL  369 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGGG
T ss_pred             CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChhh
Confidence            9999999999999985 44 699999999999999999998774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.5e-24  Score=222.84  Aligned_cols=182  Identities=23%  Similarity=0.300  Sum_probs=94.3

Q ss_pred             cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      ++++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++ .+|..+  ...+..|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhcc
Confidence            4566666666665544445555666666666666666555555666666666666666655 233222  2355555555


Q ss_pred             CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427          502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI  581 (829)
Q Consensus       502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  581 (829)
                      +|.+.+..+..+.....+..++...|.....                     ...+ ..+..+++|+.+++++|.+.. +
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------------~~~~-~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIEN-GAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCT-TGGGGCTTCCEEECCSSCCCS-C
T ss_pred             ccchhhhhhhhhhcccccccccccccccccc---------------------CCCc-cccccccccCccccccCCccc-c
Confidence            5555554444454555555555554433210                     0111 114445555555555555542 2


Q ss_pred             hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427          582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                      |..+  +++|+.|++++|..++..+..+.+++.+++|++++|++++..|.
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~  213 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG  213 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc
Confidence            2221  34555555555555555555555555555555555555544333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.7e-24  Score=223.50  Aligned_cols=272  Identities=18%  Similarity=0.263  Sum_probs=197.6

Q ss_pred             CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCC
Q 037427          447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE  526 (829)
Q Consensus       447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  526 (829)
                      .++++-+++.++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+....|..|..+++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            344455555555 3444442  4566666666666644444566666666666666666665566666677777777777


Q ss_pred             CcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCccccc
Q 037427          527 NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEGE  604 (829)
Q Consensus       527 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~  604 (829)
                      |+++. +|.. ....++.|++.+|.+.+ ++...+.....++.++...|....  ..+..+..+++|+.+++++|.+. .
T Consensus        89 n~l~~-l~~~-~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          89 NQLKE-LPEK-MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             SCCSB-CCSS-CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CccCc-Cccc-hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            76663 3332 23456777777777744 444446777888888888875432  34567888999999999999997 4


Q ss_pred             CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427          605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY  684 (829)
Q Consensus       605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (829)
                      +|..+  +++|+.|++++|..++..+..+..+.                                               
T Consensus       165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~-----------------------------------------------  195 (305)
T d1xkua_         165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLN-----------------------------------------------  195 (305)
T ss_dssp             CCSSC--CTTCSEEECTTSCCCEECTGGGTTCT-----------------------------------------------
T ss_pred             cCccc--CCccCEEECCCCcCCCCChhHhhccc-----------------------------------------------
Confidence            55443  67999999999999877776655443                                               


Q ss_pred             cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCc------cc
Q 037427          685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP------QL  758 (829)
Q Consensus       685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~------~l  758 (829)
                            .++.|++++|++++..+..+.++++|++|+|++|+|+ .+|++|..+++|++|+|++|+|+...+.      .+
T Consensus       196 ------~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         196 ------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             ------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             ------cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchh
Confidence                  7889999999999888999999999999999999999 6688999999999999999999854333      33


Q ss_pred             ccCCCCcEEeccCCcce-eecCCC
Q 037427          759 VELNALVVFSVAHNNLS-AAERNP  781 (829)
Q Consensus       759 ~~l~~L~~L~ls~N~l~-g~ip~~  781 (829)
                      ..+.+|+.|++++|+++ +.+|.+
T Consensus       269 ~~~~~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             cccCCCCEEECCCCcCccCcCCHh
Confidence            56788999999999985 555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.9e-24  Score=218.68  Aligned_cols=248  Identities=19%  Similarity=0.202  Sum_probs=121.2

Q ss_pred             CcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCC-CcCcccCCCCC-CCCcccEEEcc
Q 037427          471 LEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE-NNISGSLPSCS-SHSTIQQVHLS  548 (829)
Q Consensus       471 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~~~L~~L~L~  548 (829)
                      +++|+|++|+++...+..|.++++|++|++++|++....+..+..+..++.++... +.++...+..+ .+++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            44444444444433333344444444444444444433333344444444443322 22222112221 22333333333


Q ss_pred             CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccC
Q 037427          549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ  628 (829)
Q Consensus       549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  628 (829)
                      +|.+.. ++...+...++|+.+++++|++++..+..|..+++|+.|++++|++++..+.+|.++++|+.+++++|++++.
T Consensus       114 ~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         114 RCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             Cccccc-ccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            333321 1122245555666666666666655555566666666666666666655555666666666666666666655


Q ss_pred             CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427          629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP  708 (829)
Q Consensus       629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  708 (829)
                      .|..|..+.                                                     +|++||+++|++++..|.
T Consensus       193 ~~~~f~~l~-----------------------------------------------------~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         193 HPHAFRDLG-----------------------------------------------------RLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             CTTTTTTCT-----------------------------------------------------TCCEEECCSSCCSCCCHH
T ss_pred             ChhHhhhhh-----------------------------------------------------hccccccccccccccccc
Confidence            555544433                                                     555666666666655556


Q ss_pred             ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427          709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  776 (829)
                      .|+.+++|++|+|++|.+...-+ ...-...++.+....+++....|..+.+   ....+++.+.|+|
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             ccccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            66666666666666666654322 1111123445555555565555554432   3344455555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=214.28  Aligned_cols=177  Identities=23%  Similarity=0.284  Sum_probs=133.8

Q ss_pred             cccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEEC
Q 037427          541 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDL  620 (829)
Q Consensus       541 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  620 (829)
                      ++++|+|++|++. .++...|.++++|++|++++|+++. +| .++.+++|++|++++|+++ ..+..+..+++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            4455555555553 2444447778888888888888874 33 2466788888888888887 45667788888888888


Q ss_pred             cCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCC
Q 037427          621 SNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN  700 (829)
Q Consensus       621 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  700 (829)
                      ++|++.+..+..+..+                                                     .+++.|++++|
T Consensus       108 ~~~~~~~~~~~~~~~l-----------------------------------------------------~~l~~L~l~~n  134 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGL-----------------------------------------------------GELQELYLKGN  134 (266)
T ss_dssp             CSSCCCCCCSSTTTTC-----------------------------------------------------TTCCEEECTTS
T ss_pred             cccccceeeccccccc-----------------------------------------------------ccccccccccc
Confidence            8888765444333322                                                     36778888888


Q ss_pred             cCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcce
Q 037427          701 KLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS  775 (829)
Q Consensus       701 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  775 (829)
                      .+++..+..+..+++|+.|++++|++++..++.|..+++|++|||++|+|+ .+|+++..+++|+.|++++|++.
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            888777777888888999999999998888888888899999999999988 78888888888999999888765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=217.11  Aligned_cols=251  Identities=18%  Similarity=0.179  Sum_probs=173.1

Q ss_pred             EEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCc
Q 037427          473 GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNM  551 (829)
Q Consensus       473 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~  551 (829)
                      .++.++++++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|++.+..+..+ ....++.+....+.
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4566777766 5666553  578999999999987777789999999999999999886666555 56677777665444


Q ss_pred             ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427          552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG  631 (829)
Q Consensus       552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  631 (829)
                      ....++...|.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|++++..|.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            44555555577777777777777777766666677777777777777777766666677777777777777777655555


Q ss_pred             CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427          632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG  711 (829)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~  711 (829)
                      .|..++                                                     +|+.+++++|++++..|..|.
T Consensus       172 ~f~~l~-----------------------------------------------------~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         172 AFRGLH-----------------------------------------------------SLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             TTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTTT
T ss_pred             hhcccc-----------------------------------------------------ccchhhhhhccccccChhHhh
Confidence            554433                                                     667777777777777777777


Q ss_pred             cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCC
Q 037427          712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERN  780 (829)
Q Consensus       712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  780 (829)
                      .+++|++|++++|++++..|..|+.+++|+.|+|++|++.+.-+. ..-...++.+....+++.+..|.
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred             hhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCch
Confidence            777777777777777777777777777777777777777653321 11112344445555566555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-21  Score=197.16  Aligned_cols=200  Identities=24%  Similarity=0.211  Sum_probs=128.0

Q ss_pred             CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEcc
Q 037427          469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS  548 (829)
Q Consensus       469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~  548 (829)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|+++. ++.             
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-------------   72 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-------------   72 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-------------
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-------------
Confidence            34444555555555 3444332  345566666666655444556666666666666666542 121             


Q ss_pred             CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccC
Q 037427          549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ  628 (829)
Q Consensus       549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  628 (829)
                                  +..+++|++|++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.++++|++++|.+++.
T Consensus        73 ------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l  139 (266)
T d1p9ag_          73 ------------DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (266)
T ss_dssp             ------------CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             ------------ccccccccccccccccccc-cccccccccccccccccccccceeecccccccccccccccccccccee
Confidence                        2334555555555555553 234455566666666666666655566666677777777777777644


Q ss_pred             CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427          629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP  708 (829)
Q Consensus       629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  708 (829)
                      .+..+..+.                                                     .++.+++++|++++..+.
T Consensus       140 ~~~~~~~l~-----------------------------------------------------~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_         140 PPGLLTPTP-----------------------------------------------------KLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             CTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSCCCTT
T ss_pred             ccccccccc-----------------------------------------------------cchhcccccccccccCcc
Confidence            444333322                                                     677788888888877777


Q ss_pred             ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                      .|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++..
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            7888888999999999988 778888888899999999998763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=4.4e-17  Score=172.95  Aligned_cols=58  Identities=28%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             CCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCc
Q 037427          690 NKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP  756 (829)
Q Consensus       690 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~  756 (829)
                      ++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|+|++|+|+ .+|+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            35666666666666 44532   345666666666665 34432   245666666666665 4454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=7e-17  Score=171.33  Aligned_cols=137  Identities=21%  Similarity=0.249  Sum_probs=80.6

Q ss_pred             CCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCC
Q 037427           99 QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNL  178 (829)
Q Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L  178 (829)
                      ++++|||++++++.. |+     +  .++|++|+|++|.++ .+|..   +.+|+.|++++|.++ .++   .+  .+.|
T Consensus        39 ~l~~LdLs~~~L~~l-p~-----~--~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~---~l--p~~L  100 (353)
T d1jl5a_          39 QAHELELNNLGLSSL-PE-----L--PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS---DL--PPLL  100 (353)
T ss_dssp             TCSEEECTTSCCSCC-CS-----C--CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC---SC--CTTC
T ss_pred             CCCEEEeCCCCCCCC-CC-----C--CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh---hh--cccc
Confidence            567777777777643 32     1  357778888887777 44543   356777777777766 222   11  1357


Q ss_pred             CEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCC
Q 037427          179 EDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSS  258 (829)
Q Consensus       179 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~  258 (829)
                      ++|++++|.+... | .++.+++|++|+++++.+.... .      ....+..+.+..+....               ..
T Consensus       101 ~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~~-~------~~~~l~~l~~~~~~~~~---------------~~  156 (353)
T d1jl5a_         101 EYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLP-D------LPPSLEFIAAGNNQLEE---------------LP  156 (353)
T ss_dssp             CEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCCC-C------CCTTCCEEECCSSCCSS---------------CC
T ss_pred             ccccccccccccc-c-chhhhccceeeccccccccccc-c------ccccccchhhccccccc---------------cc
Confidence            7777777777643 3 3566777777777776655321 1      13455566665544331               22


Q ss_pred             CCCCCCCCCEEEcccccCc
Q 037427          259 PLIHLTSIERLFLSYNQFQ  277 (829)
Q Consensus       259 ~l~~l~~L~~L~Ls~n~~~  277 (829)
                      .+..++.++.+++++|...
T Consensus       157 ~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         157 ELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccceeccccccccc
Confidence            2355666666666666544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-20  Score=208.59  Aligned_cols=387  Identities=17%  Similarity=0.142  Sum_probs=179.0

Q ss_pred             CccEEEccCCCCCCC-cChhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcCC----CCCCCC-
Q 037427          316 QLESVSLSGSDIHAT-FPKFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSGP----FQTPIQ-  385 (829)
Q Consensus       316 ~L~~L~Ls~~~l~~~-~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~-  385 (829)
                      .|++|+++++++++. +...+..+++++.|+|++|.++..    ++. .+..+++|++|+|++|.++..    +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            577778877777663 244455667777777777776632    122 245667777777777766521    111121 


Q ss_pred             CCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccc-----cccCCcEEecccccCCCc
Q 037427          386 PHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKN-----YLRKLARLHLDANYFTGE  460 (829)
Q Consensus       386 ~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~  460 (829)
                      ...+|++|++++|.+++..-..+...+     ..+++|++|++++|.+.......+.     ..............+...
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l-----~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTL-----RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHT-----TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             CCCCCCEEECCCCCccccccccccchh-----hccccccccccccccchhhhhhhhhhcccccccccccccccccccchh
Confidence            234566666666666543222222111     1245666666666665432211111     011122222222221100


Q ss_pred             ----cCccCCCCCCCcEEECCCCcCCCCcc----ccc-CCCCCCCEEEccCCcccCCC----hhhhhCCCCCCEEeCCCC
Q 037427          461 ----IPKSLSNCSRLEGLYMSDNNLYGNIP----ARL-GNLSSLNDIMMASNHLQGPI----PLEFCQLNYLEILDLSEN  527 (829)
Q Consensus       461 ----~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l-~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n  527 (829)
                          ....+.....++.++++++.......    ..+ ........+.+..+.+....    ...+...+.++.+++++|
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence                00112223445555555544331100    001 11123344444444433211    112233444455555544


Q ss_pred             cCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc----hhhhhcCCCCCEEEccCCcccc
Q 037427          528 NISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI----PYWIERLIRLRYLILANNNLEG  603 (829)
Q Consensus       528 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~  603 (829)
                      .+.....                  .... .........++.+++++|.+....    ...+...+.++.+++++|.++.
T Consensus       237 ~~~~~~~------------------~~~~-~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         237 KLGDVGM------------------AELC-PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  297 (460)
T ss_dssp             BCHHHHH------------------HHHH-HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             ccccccc------------------chhh-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4321000                  0001 111233455666666666654322    2233445666666666666643


Q ss_pred             cCCccc-----CCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427          604 EVPNQL-----CGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK  678 (829)
Q Consensus       604 ~~~~~l-----~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (829)
                      .....+     .....|+.+++++|.++......+....                                         
T Consensus       298 ~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~-----------------------------------------  336 (460)
T d1z7xw1         298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-----------------------------------------  336 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-----------------------------------------
T ss_pred             cccchhhccccccccccccccccccchhhhhhhhccccc-----------------------------------------
Confidence            221111     1234566677766665432111111100                                         


Q ss_pred             cceeeecCCCCCCcceEEcCCCcCCCC----CCcccc-cCCCCCEEECCCCCCCCC----ccccccccccCCeeecCCCc
Q 037427          679 EISFSYKGKPLNKMYGVDLSCNKLTGE----IPPQIG-KLTNIRALNFSHNNLTGV----IPVSFSNLNQVESLDVSHNN  749 (829)
Q Consensus       679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~----ip~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~  749 (829)
                              ...++|++|||++|++++.    ++..+. ..+.|++|+|++|.|+..    +++.+...++|++|||++|+
T Consensus       337 --------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         337 --------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             --------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             --------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence                    0122566777777776532    222232 345577777777777643    34445556777777777777


Q ss_pred             CcccCCccc----c-cCCCCcEEeccCCccee
Q 037427          750 LNGKIPPQL----V-ELNALVVFSVAHNNLSA  776 (829)
Q Consensus       750 l~~~ip~~l----~-~l~~L~~L~ls~N~l~g  776 (829)
                      |+......+    . +...|+.|++.+|++..
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            764333222    1 22357777777776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-20  Score=207.72  Aligned_cols=113  Identities=18%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             CCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CCccccc
Q 037427           99 QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--IDVKETL  172 (829)
Q Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p~~~~l  172 (829)
                      +|++||++++++++..-.   +.+..++++++|+|++|.++..    ++..+..+++|++|||++|.|+..  ....+.+
T Consensus         3 ~l~~ld~~~~~i~~~~~~---~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH---HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHHH---HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            577888888887764211   1245567778888888877642    445567778888888888877521  0011222


Q ss_pred             c-CCCCCCEEecCCCCCCch----hhHhhhcCCCCCEEEcccccCcc
Q 037427          173 D-NFTNLEDLTLDYSSLHIS----ILKSIAAFTSLKRLSIQNGRVDG  214 (829)
Q Consensus       173 ~-~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~  214 (829)
                      . ...+|++|+|++|.++..    ++..+..+++|++|++++|.++.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            2 234678888888777643    34456667777777777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=7.1e-18  Score=166.76  Aligned_cols=75  Identities=20%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             EEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcc
Q 037427          426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL  505 (829)
Q Consensus       426 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  505 (829)
                      ++++.+++++..  .+..+.+|+.|++.+|.++. ++ .+..+++|++|++++|++++..|  +..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            444444444432  23344555555555555553 22 34555555555555555543222  44444444444444444


Q ss_pred             c
Q 037427          506 Q  506 (829)
Q Consensus       506 ~  506 (829)
                      +
T Consensus        98 ~   98 (227)
T d1h6ua2          98 K   98 (227)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.6e-16  Score=156.91  Aligned_cols=186  Identities=22%  Similarity=0.270  Sum_probs=142.0

Q ss_pred             CcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEc
Q 037427          421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM  500 (829)
Q Consensus       421 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  500 (829)
                      .+|+.|++.+|.++..  ..+..+++|++|++++|.+++..|  +..+++|+++++++|.++. ++ .+..+++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-ccccccccccccc
Confidence            4777888888877653  357778888888888888875433  7788888888888888763 33 5778888888888


Q ss_pred             cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCc
Q 037427          501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN  580 (829)
Q Consensus       501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  580 (829)
                      +++...+..  .+...+.++.+.++++.+... ......++|+.|++++|.+.+..+   +.++++|++|++++|++++.
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             TTSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccc--hhccccchhhhhchhhhhchh-hhhccccccccccccccccccchh---hcccccceecccCCCccCCC
Confidence            888776543  356777888888888877643 233467788888888888754332   78899999999999999864


Q ss_pred             chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427          581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN  622 (829)
Q Consensus       581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  622 (829)
                       + .+.++++|++|++++|++++. + .+.++++|++|++++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence             3 388899999999999999854 3 388999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.5e-17  Score=163.68  Aligned_cols=220  Identities=17%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427          472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM  551 (829)
Q Consensus       472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~  551 (829)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+..                    
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~--------------------   67 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------   67 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC--------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc--------------------
Confidence            45555555555 4444332  355666666666654444455555556666555555543                    


Q ss_pred             ccCcCCccccCCCCCccEEEccC-CcCCCcchhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCEEECcCCcCccCC
Q 037427          552 LYGPLKYGTFFNRSSIVTLDLSY-NSFSGNIPYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRLIDLSNNNLFGQI  629 (829)
Q Consensus       552 l~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~  629 (829)
                         .++...|.+++.++++++.. |.+....+..+.++++|+++++++|.+....+. .+..++.+..+..+++++....
T Consensus        68 ---~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          68 ---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             ---EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ---eeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence               33333355555555555442 445544555555666666666666655422221 1223344444444444444322


Q ss_pred             CCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcc
Q 037427          630 PGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ  709 (829)
Q Consensus       630 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~  709 (829)
                      +..+..+.                                                    ..++.|++++|+++...+..
T Consensus       145 ~~~~~~~~----------------------------------------------------~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGLS----------------------------------------------------FESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTSB----------------------------------------------------SSCEEEECCSSCCCEECTTT
T ss_pred             cccccccc----------------------------------------------------ccceeeeccccccccccccc
Confidence            22222211                                                    14556677777776433333


Q ss_pred             cccCCCCCEE-ECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427          710 IGKLTNIRAL-NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA  770 (829)
Q Consensus       710 l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  770 (829)
                      + ..++++.+ ++++|+++...+..|.++++|++|||++|+|+...+..|.++..|+++++.
T Consensus       173 ~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         173 F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             T-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             c-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            3 33444333 456666765444556777777777777777774444556666666665554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.6e-17  Score=162.77  Aligned_cols=219  Identities=17%  Similarity=0.135  Sum_probs=153.6

Q ss_pred             cEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCC-hhhhhCCCCCCEEeCCC
Q 037427          448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPI-PLEFCQLNYLEILDLSE  526 (829)
Q Consensus       448 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~  526 (829)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|..++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            67888888888 6776553  58999999999998655667999999999999999987654 45678899999988764


Q ss_pred             -CcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcch-hhhhcCCCCCEEEccCCccccc
Q 037427          527 -NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNNLEGE  604 (829)
Q Consensus       527 -n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~  604 (829)
                       |.+....+..                        |.++++|+++++++|++....+ ..+..+..+..+...++.+...
T Consensus        88 ~n~l~~~~~~~------------------------~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          88 ANNLLYINPEA------------------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CTTCCEECTTS------------------------EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccc------------------------ccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence             4555333332                        5556666666666666653322 1233445555556666666655


Q ss_pred             CCcccCCCC-CCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427          605 VPNQLCGLK-QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS  683 (829)
Q Consensus       605 ~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (829)
                      .+..+.+++ .++.|++++|+++...+..+...                                               
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~-----------------------------------------------  176 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-----------------------------------------------  176 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC-----------------------------------------------
T ss_pred             cccccccccccceeeecccccccccccccccch-----------------------------------------------
Confidence            556666654 67788888888874333222211                                               


Q ss_pred             ecCCCCCCcc-eEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCC
Q 037427          684 YKGKPLNKMY-GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH  747 (829)
Q Consensus       684 ~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  747 (829)
                             ++. .+++++|+++...+..|.++++|++|+|++|+|+...+..|.++++|+.+++++
T Consensus       177 -------~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         177 -------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             -------CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             -------hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence                   333 345788888855556689999999999999999977677788888888888754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.3e-17  Score=158.53  Aligned_cols=181  Identities=21%  Similarity=0.327  Sum_probs=133.1

Q ss_pred             EEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcc
Q 037427          426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL  505 (829)
Q Consensus       426 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  505 (829)
                      ..+..+.+++.+..  ..+.+|+.|++++|.+++. + .+..+++|++|++++|++++..  .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            34555555544432  3466788888888888743 2 3677888888888888887533  367788888888888888


Q ss_pred             cCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhh
Q 037427          506 QGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI  585 (829)
Q Consensus       506 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  585 (829)
                      ++ ++ .+..+++|+.|++++|.+. .++....++.++.+++++|.+.+...   +..+++|+++++++|++++..+  +
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~~---~~~l~~L~~l~l~~n~l~~i~~--l  174 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP--L  174 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             cc-cc-ccccccccccccccccccc-cccccccccccccccccccccccccc---cccccccccccccccccccccc--c
Confidence            74 33 4777888888888888776 34444477788888888888754222   6678899999999999986433  7


Q ss_pred             hcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427          586 ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN  622 (829)
Q Consensus       586 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  622 (829)
                      .++++|++|++++|+++ .++ .+.++++|++|+|++
T Consensus       175 ~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            88999999999999997 454 588999999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=5.7e-17  Score=155.29  Aligned_cols=155  Identities=16%  Similarity=0.190  Sum_probs=88.3

Q ss_pred             CCccEEEccCCcCCCc-chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCC
Q 037427          565 SSIVTLDLSYNSFSGN-IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD  643 (829)
Q Consensus       565 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  643 (829)
                      +++++|+|++|+|++. .+..|.++++|+.|+|++|++.+..+..+..+++|++|+|++|+|++..|..|.++.      
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~------  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC------
Confidence            3556666666666542 344455666666666666666655556666666666666666666554444444333      


Q ss_pred             CCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCC
Q 037427          644 NVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSH  723 (829)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  723 (829)
                                                                     +|++|+|++|+|++..|..|..+++|++|+|++
T Consensus       103 -----------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         103 -----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----------------------------------------------cccccccCCccccccCHHHhcCCcccccccccc
Confidence                                                           556666666666655566666666677777777


Q ss_pred             CCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427          724 NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA  776 (829)
Q Consensus       724 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  776 (829)
                      |.+....+. ..-...++.+.+..|.++...|..+   ..++.++|+.|++..
T Consensus       136 N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         136 NPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             CCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred             cccccccch-HHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcC
Confidence            766643221 1112335555666666665555443   344556666666653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.3e-16  Score=151.36  Aligned_cols=146  Identities=23%  Similarity=0.387  Sum_probs=101.3

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  640 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  640 (829)
                      +..+++|++|++++|++++..+  ++.+++|++|++++|++++ ++ .+..+++|+.|++++|.+.. ++ .+.      
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~~-~l~------  131 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLV------  131 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CG-GGG------
T ss_pred             HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-cccccccccccccccccccc-cc-ccc------
Confidence            5566777777777777765432  5667777777777777763 33 46677777777777776642 11 111      


Q ss_pred             CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEE
Q 037427          641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN  720 (829)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  720 (829)
                                                                     .++.++.+++++|.+++  +..+..+++|++++
T Consensus       132 -----------------------------------------------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         132 -----------------------------------------------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             -----------------------------------------------ccccccccccccccccc--cccccccccccccc
Confidence                                                           12366777888887763  33567788888888


Q ss_pred             CCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccC
Q 037427          721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAH  771 (829)
Q Consensus       721 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  771 (829)
                      +++|++++..  .++++++|+.|+|++|+++. +| .+.++++|++|+|++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            8888888643  37888888888888888874 54 588888888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=8.5e-17  Score=154.05  Aligned_cols=173  Identities=18%  Similarity=0.254  Sum_probs=108.1

Q ss_pred             EEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCc
Q 037427          521 ILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNN  600 (829)
Q Consensus       521 ~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  600 (829)
                      .++.++++++ .+|..+ .+++++|+|++|++++.++...|.++++|+.|++++|++....+..+..+++|++|+|++|+
T Consensus        12 ~v~Cs~~~L~-~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCS-SCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcC-ccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            3444444444 333322 23455555555555554555556777777777777777777777777777777777777777


Q ss_pred             ccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccc
Q 037427          601 LEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEI  680 (829)
Q Consensus       601 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (829)
                      +++..+.+|.++++|++|+|++|+|++..|+.|..+.                                           
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~-------------------------------------------  126 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-------------------------------------------  126 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-------------------------------------------
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCc-------------------------------------------
Confidence            7766666777777777777777777766565555443                                           


Q ss_pred             eeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427          681 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG  752 (829)
Q Consensus       681 ~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  752 (829)
                                +|++|+|++|.+....+.. .-...++.+.+..|.++...|..+   ..++.+||+.|.+.-
T Consensus       127 ----------~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         127 ----------SLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             ----------TCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred             ----------ccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcC
Confidence                      6677777777776433211 112235566677777776666544   456677888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.3e-15  Score=146.62  Aligned_cols=163  Identities=28%  Similarity=0.396  Sum_probs=120.5

Q ss_pred             cCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427           95 TPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN  174 (829)
Q Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~  174 (829)
                      ..++++++|+++++.+.....      +..+++|++|++++|.+++..+  ++++++|++|++++|.+.. ++   .+++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~------l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~---~l~~  104 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT---PLAN  104 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG---GGTT
T ss_pred             HHhcCCCEEECCCCCCCCccc------cccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc---cccc
Confidence            346778888888888775421      6678888888888888876433  8888888888888888763 33   5788


Q ss_pred             CCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccc
Q 037427          175 FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGN  254 (829)
Q Consensus       175 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~  254 (829)
                      +++|++|+++++.+...  ..+..+++|+.|++++|++... +    .+..+++|++|++++|++++ ++          
T Consensus       105 l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~----~l~~~~~L~~L~l~~n~l~~-l~----------  166 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-S----ALSGLTSLQQLNFSSNQVTD-LK----------  166 (199)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G----GGTTCTTCSEEECCSSCCCC-CG----------
T ss_pred             ccccccccccccccccc--cccchhhhhHHhhhhhhhhccc-c----cccccccccccccccccccC-Cc----------
Confidence            88888888888887754  3577888888888888887632 2    47778888888888888774 22          


Q ss_pred             cCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCcee
Q 037427          255 ISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVF  294 (829)
Q Consensus       255 i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  294 (829)
                          .+.++++|++|++++|+++. +  ..+.++++|+.|
T Consensus       167 ----~l~~l~~L~~L~ls~N~i~~-i--~~l~~L~~L~~L  199 (199)
T d2omxa2         167 ----PLANLTTLERLDISSNKVSD-I--SVLAKLTNLESL  199 (199)
T ss_dssp             ----GGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEE
T ss_pred             ----cccCCCCCCEEECCCCCCCC-C--ccccCCCCCCcC
Confidence                24778888888888888763 3  236677777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.9e-15  Score=145.47  Aligned_cols=177  Identities=22%  Similarity=0.318  Sum_probs=109.4

Q ss_pred             EEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcc
Q 037427          426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHL  505 (829)
Q Consensus       426 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  505 (829)
                      ..++.+.+++.+.  ...++++++|++++|.++. + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3444555544322  2345666777777776663 2 235666777777777777764332  66777777777777766


Q ss_pred             cCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhh
Q 037427          506 QGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI  585 (829)
Q Consensus       506 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  585 (829)
                      ... + .+.+++.|+.|++++|.+.. ++....+++|+.|++++|++.. ++ . +..+++|+.|++++|++++..  .+
T Consensus        97 ~~~-~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~-~-l~~~~~L~~L~l~~n~l~~l~--~l  168 (199)
T d2omxa2          97 ADI-T-PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISD-IS-A-LSGLTSLQQLNFSSNQVTDLK--PL  168 (199)
T ss_dssp             CCC-G-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC-CG-G-GTTCTTCSEEECCSSCCCCCG--GG
T ss_pred             ccc-c-cccccccccccccccccccc-ccccchhhhhHHhhhhhhhhcc-cc-c-ccccccccccccccccccCCc--cc
Confidence            533 2 36667777777777776653 2223355666666666666632 32 1 667777777777777777543  26


Q ss_pred             hcCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 037427          586 ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLI  618 (829)
Q Consensus       586 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  618 (829)
                      +++++|++|++++|++++ ++ .++++++|+.|
T Consensus       169 ~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            777778888888777763 33 46677777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-15  Score=152.90  Aligned_cols=200  Identities=18%  Similarity=0.126  Sum_probs=98.3

Q ss_pred             ccEEEcccccccccCccccccccCCcEEecccccCCCc-cCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427          423 LEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGE-IPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA  501 (829)
Q Consensus       423 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  501 (829)
                      ...+.++...+...... .....+|++|++++|.++.. +...+..+++|++|++++|.+.+..+..++.+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            34445544443322222 22345677777777666532 23445667777777777777666666666677777777777


Q ss_pred             CC-cccCC-ChhhhhCCCCCCEEeCCCCc-Cccc-CCCCC--CCCcccEEEccCCc--ccCcCCccccCCCCCccEEEcc
Q 037427          502 SN-HLQGP-IPLEFCQLNYLEILDLSENN-ISGS-LPSCS--SHSTIQQVHLSKNM--LYGPLKYGTFFNRSSIVTLDLS  573 (829)
Q Consensus       502 ~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~--~~~~L~~L~L~~n~--l~~~~~~~~l~~l~~L~~L~Ls  573 (829)
                      +| .++.. +......+++|++|++++|. ++.. +....  ..+.|+.|+++++.  +....-...+.++++|++|+++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            64 33321 11223456777777777653 3211 00111  23445555555432  1110000112334555555555


Q ss_pred             CC-cCCCcchhhhhcCCCCCEEEccCC-cccccCCcccCCCCCCCEEECcCC
Q 037427          574 YN-SFSGNIPYWIERLIRLRYLILANN-NLEGEVPNQLCGLKQLRLIDLSNN  623 (829)
Q Consensus       574 ~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N  623 (829)
                      +| .+++.....+.++++|++|++++| .+++.....+.++++|+.|+++++
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            53 244444444555555555555553 344333344445555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.2e-15  Score=148.98  Aligned_cols=254  Identities=16%  Similarity=0.194  Sum_probs=139.9

Q ss_pred             cEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCC-cccccCCCCCCCEEEccC
Q 037427          424 EYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN-IPARLGNLSSLNDIMMAS  502 (829)
Q Consensus       424 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~  502 (829)
                      +++|++++.+.......+.. .....+.++.......... .....+|++||+++|.+.+. ++..+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            45677766654322222211 2345566666555433222 33456899999999988754 345578889999999999


Q ss_pred             CcccCCChhhhhCCCCCCEEeCCCCc-Cccc-CCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCc-CCC
Q 037427          503 NHLQGPIPLEFCQLNYLEILDLSENN-ISGS-LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNS-FSG  579 (829)
Q Consensus       503 n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~  579 (829)
                      |.+++..+..++.+++|++|++++|. ++.. +...                        +.++++|++|++++|. +++
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l------------------------~~~~~~L~~L~ls~c~~~~~  136 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL------------------------LSSCSRLDELNLSWCFDFTE  136 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH------------------------HHHCTTCCEEECCCCTTCCH
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchh------------------------hHHHHhcccccccccccccc
Confidence            99887778888888999999998863 4321 0000                        2234455555555532 221


Q ss_pred             c-chhhhhc-CCCCCEEEccCCc--cccc-CCcccCCCCCCCEEECcCCc-CccCCCCCccCCCccCCCCCCCCCCCCCC
Q 037427          580 N-IPYWIER-LIRLRYLILANNN--LEGE-VPNQLCGLKQLRLIDLSNNN-LFGQIPGCLDNTSLHNNGDNVGSSAPTFN  653 (829)
Q Consensus       580 ~-~~~~l~~-l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  653 (829)
                      . +...+.. .++|+.|+++++.  ++.. +.....++++|++|++++|. +++..+..+..                  
T Consensus       137 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~------------------  198 (284)
T d2astb2         137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ------------------  198 (284)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG------------------
T ss_pred             ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc------------------
Confidence            1 1112222 3455555555432  2211 11222345566666666543 33222222221                  


Q ss_pred             CCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCC-cCCCCCCcccccCCCCCEEECCCCCCCCCccc
Q 037427          654 PNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN-KLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV  732 (829)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  732 (829)
                                                         +++|++|+++++ .+++.....++++++|+.|+++++ ++..   
T Consensus       199 -----------------------------------~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~---  239 (284)
T d2astb2         199 -----------------------------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---  239 (284)
T ss_dssp             -----------------------------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---
T ss_pred             -----------------------------------cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH---
Confidence                                               225666666663 455555556777788888888776 3321   


Q ss_pred             ccccc-ccCCeeecCCCcCcccCCccccc
Q 037427          733 SFSNL-NQVESLDVSHNNLNGKIPPQLVE  760 (829)
Q Consensus       733 ~l~~l-~~L~~LdLs~N~l~~~ip~~l~~  760 (829)
                      .+..+ ..+..|++..++++...++.++.
T Consensus       240 ~l~~l~~~lp~L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         240 TLQLLKEALPHLQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHHHHHHhCccccccCccCCCCCCCccCc
Confidence            22222 23455566777777666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=7.1e-14  Score=122.09  Aligned_cols=103  Identities=24%  Similarity=0.354  Sum_probs=72.2

Q ss_pred             cEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427          101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED  180 (829)
Q Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~  180 (829)
                      |+|||++|+++....      +..+++|++|++++|.++. +|..|+.+++|++|++++|.+++ +|   .+.++++|++
T Consensus         1 R~L~Ls~n~l~~l~~------l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~---~~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD---GVANLPRLQE   69 (124)
T ss_dssp             SEEECTTSCCSSCCC------GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG---GGTTCSSCCE
T ss_pred             CEEEcCCCCCCCCcc------cccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC---ccccccccCe
Confidence            567788887774422      6677778888888888774 56667778888888888887773 33   4777777777


Q ss_pred             EecCCCCCCchh-hHhhhcCCCCCEEEcccccCcc
Q 037427          181 LTLDYSSLHISI-LKSIAAFTSLKRLSIQNGRVDG  214 (829)
Q Consensus       181 L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~  214 (829)
                      |++++|.++... ...++.+++|++|++++|.+..
T Consensus        70 L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             EECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            777777776543 2456677777777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=127.24  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcc-ccccccccCCeeecCCCcCcccCC----cccccCCCCc
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP-VSFSNLNQVESLDVSHNNLNGKIP----PQLVELNALV  765 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip----~~l~~l~~L~  765 (829)
                      +|++|++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|++|++++|+++. .|    ..+..+++|+
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCS
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcC
Confidence            45555555555554444445566777777777777764321 356667777777777777763 33    2456677777


Q ss_pred             EEe
Q 037427          766 VFS  768 (829)
Q Consensus       766 ~L~  768 (829)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.6e-13  Score=118.43  Aligned_cols=81  Identities=30%  Similarity=0.446  Sum_probs=32.8

Q ss_pred             cceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccC-CcccccCCCCcEEecc
Q 037427          692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI-PPQLVELNALVVFSVA  770 (829)
Q Consensus       692 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls  770 (829)
                      |++||+++|+++ .+|+.++.+++|++|++++|+|++. | .++.+++|++|++++|+|+... +..+..+++|++++++
T Consensus        22 L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          22 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence            333444444443 2333344444444444444444422 2 2444444444444444444221 1233444444444444


Q ss_pred             CCcce
Q 037427          771 HNNLS  775 (829)
Q Consensus       771 ~N~l~  775 (829)
                      +|+++
T Consensus        99 ~N~i~  103 (124)
T d1dcea3          99 GNSLC  103 (124)
T ss_dssp             TSGGG
T ss_pred             CCcCC
Confidence            44443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.4e-14  Score=152.64  Aligned_cols=177  Identities=15%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             cccccccCCcEEecccccCCCc----cCccCCCCCCCcEEECCCCcCCCC----------cccccCCCCCCCEEEccCCc
Q 037427          439 SKKNYLRKLARLHLDANYFTGE----IPKSLSNCSRLEGLYMSDNNLYGN----------IPARLGNLSSLNDIMMASNH  504 (829)
Q Consensus       439 ~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~l~~n~  504 (829)
                      ..+.....++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455567777777777776432    223455667777777776644311          11223445556666666665


Q ss_pred             ccCCC----hhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCc
Q 037427          505 LQGPI----PLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN  580 (829)
Q Consensus       505 l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  580 (829)
                      +....    ...+...++|++|++++|.+.......+ ...+..+..          .......+.|+.+++++|++...
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~~~----------~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-ARALQELAV----------NKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-HHHHHHHHH----------HHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccccccchhhhhcccccchheecccccccccccccc-ccccccccc----------ccccccCcccceeeccccccccc
Confidence            54432    2223344555555555554431100000 000000000          00012345667777777766533


Q ss_pred             c----hhhhhcCCCCCEEEccCCccccc-----CCcccCCCCCCCEEECcCCcCc
Q 037427          581 I----PYWIERLIRLRYLILANNNLEGE-----VPNQLCGLKQLRLIDLSNNNLF  626 (829)
Q Consensus       581 ~----~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~N~l~  626 (829)
                      .    ...+...+.|+.|++++|+++..     +...+..+++|+.|++++|.++
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            2    23344556666666666666421     2233445556666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=126.14  Aligned_cols=129  Identities=17%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427          561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN  640 (829)
Q Consensus       561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  640 (829)
                      +.+..++++|||++|+|+.. +..+..+++|+.|++++|+++ .+ +.+..+++|++|++++|+++...+..+..+    
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l----   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL----   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC----
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccc----
Confidence            56777888888888888754 555677888999999999887 34 357888899999999998875444333332    


Q ss_pred             CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCC-cccccCCCCCEE
Q 037427          641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP-PQIGKLTNIRAL  719 (829)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L  719 (829)
                                                                       ++|+.|++++|+++.... ..+..+++|++|
T Consensus        87 -------------------------------------------------~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          87 -------------------------------------------------PDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             -------------------------------------------------TTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             -------------------------------------------------cccccceeccccccccccccccccccccchh
Confidence                                                             378889999998884321 467889999999


Q ss_pred             ECCCCCCCCCc---cccccccccCCeeec
Q 037427          720 NFSHNNLTGVI---PVSFSNLNQVESLDV  745 (829)
Q Consensus       720 ~Ls~N~l~~~~---p~~l~~l~~L~~LdL  745 (829)
                      ++++|.++...   +..+..+++|+.||-
T Consensus       118 ~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         118 CILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             hcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99999998442   235788899999883

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=7.7e-14  Score=146.81  Aligned_cols=96  Identities=19%  Similarity=0.208  Sum_probs=53.3

Q ss_pred             ccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCcc----------chhhhcCCCCCCEEEcCCCcCC
Q 037427           94 LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----------IFSSLAGLSSLRTLSLGYNRLK  163 (829)
Q Consensus        94 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----------~~~~l~~L~~L~~L~Ls~n~i~  163 (829)
                      +.....|+.|+|++|.+...........+...++|+.|+++++.....          +...+..+++|++|+|++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            445667777777777664432222222356667777777776543311          2233455667777777777665


Q ss_pred             ccCC--ccccccCCCCCCEEecCCCCCC
Q 037427          164 GSID--VKETLDNFTNLEDLTLDYSSLH  189 (829)
Q Consensus       164 ~~~p--~~~~l~~l~~L~~L~Ls~n~l~  189 (829)
                      ..-.  ....+...++|++|++++|.+.
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             cccccchhhhhcccccchheeccccccc
Confidence            3211  1133445666777777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=122.88  Aligned_cols=114  Identities=12%  Similarity=0.136  Sum_probs=91.9

Q ss_pred             CcceEEcCCCcCCCCCCcccccCCCCCEEECCCC-CCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427          691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHN-NLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV  769 (829)
Q Consensus       691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  769 (829)
                      ..+.++.+++.++ .+|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456888998888 67888999999999999876 488777788999999999999999999888888999999999999


Q ss_pred             cCCcceeecCCCCCCCCCCcCCCCCCccccccccCCCCCCcccchhhhcCCccccccccC
Q 037427          770 AHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC  829 (829)
Q Consensus       770 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~c~~~~  829 (829)
                      ++|+|+...+..  |..                      .....++..+|||+|||++.|
T Consensus        88 s~N~l~~l~~~~--~~~----------------------~~l~~L~L~~Np~~C~C~~~~  123 (156)
T d2ifga3          88 SFNALESLSWKT--VQG----------------------LSLQELVLSGNPLHCSCALRW  123 (156)
T ss_dssp             CSSCCSCCCSTT--TCS----------------------CCCCEEECCSSCCCCCGGGHH
T ss_pred             cCCCCcccChhh--hcc----------------------ccccccccCCCcccCCchHHH
Confidence            999998543321  100                      012347889999999998865

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.4e-13  Score=131.43  Aligned_cols=143  Identities=22%  Similarity=0.312  Sum_probs=101.8

Q ss_pred             ccEEEccCC--cCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCC
Q 037427          567 IVTLDLSYN--SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDN  644 (829)
Q Consensus       567 L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  644 (829)
                      .+.+++.+.  .+. .++..+..+++|++|+|++|+|+ .++ .+..+++|++|++++|+++ .+|..+..         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc---------
Confidence            444555443  222 45677888999999999999987 444 5788889999999999886 23322111         


Q ss_pred             CCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCC
Q 037427          645 VGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHN  724 (829)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  724 (829)
                                                                  ++.|+.|++++|+++. + +.+..+++|+.|++++|
T Consensus        92 --------------------------------------------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          92 --------------------------------------------ADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             --------------------------------------------HHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEE
T ss_pred             --------------------------------------------cccccccccccccccc-c-ccccccccccccccccc
Confidence                                                        1257788888888884 3 34778888999999999


Q ss_pred             CCCCCcc-ccccccccCCeeecCCCcCcccCCcc----------cccCCCCcEEe
Q 037427          725 NLTGVIP-VSFSNLNQVESLDVSHNNLNGKIPPQ----------LVELNALVVFS  768 (829)
Q Consensus       725 ~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~  768 (829)
                      +|+.... ..+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       126 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8885422 46788889999999999887544432          56678888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.4e-11  Score=106.83  Aligned_cols=58  Identities=19%  Similarity=0.167  Sum_probs=27.1

Q ss_pred             cceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcC
Q 037427          692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL  750 (829)
Q Consensus       692 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l  750 (829)
                      |+.|+|++|+|+...|..|..+++|++|+|++|+|+...+..|.. .+|+.|+|++|++
T Consensus        58 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             CSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             cCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCCCcc
Confidence            333444444444344444555555555555555555333333332 2455555555555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=8.5e-13  Score=125.79  Aligned_cols=128  Identities=22%  Similarity=0.299  Sum_probs=78.6

Q ss_pred             ccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCC
Q 037427          486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNR  564 (829)
Q Consensus       486 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l  564 (829)
                      +..+..+++|++|++++|+++.. + .+..+++|++|++++|.++ .+|... .+++|+.|++++|+++. ++ . +..+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~-~~~l  114 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G-IEKL  114 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-H-HHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-c-cccc
Confidence            33445555555555555555432 2 3555555555555555554 233322 23456666666666543 22 1 6677


Q ss_pred             CCccEEEccCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcc----------cCCCCCCCEEE
Q 037427          565 SSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQ----------LCGLKQLRLID  619 (829)
Q Consensus       565 ~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~----------l~~l~~L~~L~  619 (829)
                      ++|++|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888889999888875432 46788899999999999886544332          55688999887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2e-08  Score=91.48  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             chhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccc
Q 037427          142 IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA  215 (829)
Q Consensus       142 ~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  215 (829)
                      ++..+..+++|++|+|++|+|+..-+....+..+++|++|+|++|.++....-......+|++|++++|.+...
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            34445667778888888887764322224456677777777777777754433333444567777777766543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.5e-07  Score=81.61  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             CCCcceEEcCCCcCCCC--CCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcc-------cc
Q 037427          689 LNKMYGVDLSCNKLTGE--IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQ-------LV  759 (829)
Q Consensus       689 l~~L~~L~Ls~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-------l~  759 (829)
                      ++.|++|+|++|+|+..  ++..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|+++......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            56788899999998854  2455778899999999999998654434444567889999999988655432       56


Q ss_pred             cCCCCcEEe
Q 037427          760 ELNALVVFS  768 (829)
Q Consensus       760 ~l~~L~~L~  768 (829)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=2.9e-06  Score=77.11  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=41.9

Q ss_pred             CCCCcEEeCCCC-CCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CCcc
Q 037427           97 FQQLETLHLDSN-NIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--IDVK  169 (829)
Q Consensus        97 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p~~  169 (829)
                      .+.|++|+|+++ .+....-...+.++...++|++|+|++|.+...    +...+...+.|++|+|++|.+...  ....
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666653 233221111223345555566666666655432    223334445566666665555421  1112


Q ss_pred             ccccCCCCCCEEecCCCC
Q 037427          170 ETLDNFTNLEDLTLDYSS  187 (829)
Q Consensus       170 ~~l~~l~~L~~L~Ls~n~  187 (829)
                      ..+...+.|++|++++|.
T Consensus        94 ~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTTTCCCSEEECCCCS
T ss_pred             HHHHhCCcCCEEECCCCc
Confidence            234444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.71  E-value=1.8e-05  Score=71.70  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             CCCCCCCEEECCCC-CCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CCccccccCCCCCCEEecCCCCCCchhh--
Q 037427          123 SGLSKLKLLNLGRN-LFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--IDVKETLDNFTNLEDLTLDYSSLHISIL--  193 (829)
Q Consensus       123 ~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p~~~~l~~l~~L~~L~Ls~n~l~~~~~--  193 (829)
                      .+.++|++|+|+++ .++..    +...+...++|++|+|++|.+...  ....+.+...+.|++|+|++|.++....  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34678888888864 46543    344566777888888888877532  2223455666777788887777775432  


Q ss_pred             --HhhhcCCCCCEEEcccccC
Q 037427          194 --KSIAAFTSLKRLSIQNGRV  212 (829)
Q Consensus       194 --~~l~~l~~L~~L~L~~n~l  212 (829)
                        .++...+.|++|++++|++
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHhCCcCCEEECCCCcC
Confidence              3344556666666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.55  E-value=2.5e-05  Score=70.74  Aligned_cols=115  Identities=21%  Similarity=0.210  Sum_probs=60.9

Q ss_pred             CCCCCcEEeCCC-CCCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CCc
Q 037427           96 PFQQLETLHLDS-NNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--IDV  168 (829)
Q Consensus        96 ~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p~  168 (829)
                      ..+.|++|+|++ +.++...-.....++...++|++|++++|.++..    +...+...+.++++++++|.+...  .+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346777777776 3444322222233455667777777777776543    233445566777777777666422  112


Q ss_pred             cccccCCCCCCEEec--CCCCCCch----hhHhhhcCCCCCEEEcccc
Q 037427          169 KETLDNFTNLEDLTL--DYSSLHIS----ILKSIAAFTSLKRLSIQNG  210 (829)
Q Consensus       169 ~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n  210 (829)
                      ...+...++|+.++|  ++|.+...    +.+.+...++|+.|++..+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            245555666665444  34455432    2233445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=0.00017  Score=65.01  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             CCCCCCCEEECCC-CCCCcc----chhhhcCCCCCCEEEcCCCcCCccCC--ccccccCCCCCCEEecCCCCCCc
Q 037427          123 SGLSKLKLLNLGR-NLFNNS----IFSSLAGLSSLRTLSLGYNRLKGSID--VKETLDNFTNLEDLTLDYSSLHI  190 (829)
Q Consensus       123 ~~l~~L~~L~Ls~-n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~~p--~~~~l~~l~~L~~L~Ls~n~l~~  190 (829)
                      .+.+.|++|+|++ +.++..    +..++...++|++|+|++|.+.....  ....+...+.++.+++++|.+..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            4456777777776 345432    23344556667777777766642210  11334455566666666665553