Citrus Sinensis ID: 037436

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
MAKSHSRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHccccEEEEccccccHHHHHHHccccccccccccHHHHHHccccEEEEEEcccccccccEEEcEEEcccEEcc
ccccccccccccHHHccccEEEcccccccccccccccccccccccccccccccEcccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHccccEEEEEcccccHHHHHHccccccccccccHHHHHHHcccccEEEEEEccccccEEEEEEcccccEEEcc
makshsrsprlsisrsisrvrvhspslqrkkvsknsvetdqnveflgggnaeeveyvgnessgserygnKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMkstcqlkkpgVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNrwsskkkavGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA
makshsrsprlsisrsisrvrvhspslqrkkvsknsvetdqnveflgggnaeeVEYVGnessgserygnKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKsskqvketkgkkLYLRAYEKLHsmkstcqlkkpgVQVEIAITegkekgpiiveeakrqnvsllvlgqrrksIVWTLmnrwsskkkavgdiadyciqnssrmtiavrrkssklggylittkrhknfwlla
MAKshsrsprlsisrsisrvrvhspsLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA
********************************************************************NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLL*
**********************************************************************VMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSS************LRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAV***************RHKNFWLLA
*************SRSISR*****************VETDQNVEFLGGGNAEEVEY********ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA
*******SPRLSISRSISRVRVH********************************************GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSS************LRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKSHSRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
255547129216 conserved hypothetical protein [Ricinus 0.911 0.995 0.609 3e-70
224099211237 predicted protein [Populus trichocarpa] 0.991 0.987 0.523 6e-60
224124224193 predicted protein [Populus trichocarpa] 0.788 0.963 0.616 5e-57
147835474231 hypothetical protein VITISV_022507 [Viti 0.974 0.995 0.510 1e-56
255541970243 conserved hypothetical protein [Ricinus 0.991 0.962 0.497 2e-56
359491370231 PREDICTED: uncharacterized protein LOC10 0.974 0.995 0.506 5e-56
357487921236 hypothetical protein MTR_5g047050 [Medic 0.987 0.987 0.502 1e-54
359472832225 PREDICTED: uncharacterized protein LOC10 0.949 0.995 0.523 4e-54
449441119228 PREDICTED: uncharacterized protein LOC10 0.961 0.995 0.497 3e-53
449529658228 PREDICTED: uncharacterized LOC101221050 0.961 0.995 0.497 3e-53
>gi|255547129|ref|XP_002514622.1| conserved hypothetical protein [Ricinus communis] gi|223546226|gb|EEF47728.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 171/228 (75%), Gaps = 13/228 (5%)

Query: 9   PRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYG 68
           P+ SIS+S++R+RV SP+L+RK  + +S + DQ +EFLG G    +E  G E+      G
Sbjct: 2   PKQSISKSMTRIRVRSPNLRRKP-TLDSGDNDQKLEFLGNG----MENFGGEN------G 50

Query: 69  NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKL 128
           NKVMVV DSSL+AKGALEWALSHTVQ +DTIVLLYV   S++        K+ LRA+E L
Sbjct: 51  NKVMVVVDSSLEAKGALEWALSHTVQSRDTIVLLYVSRPSNRGTDSNS--KVNLRAHELL 108

Query: 129 HSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWS 188
           HSMK+ CQ ++PGVQVE+A+ EGKEKG ++VEEAK+Q VSLLVLG R++SI+W LM RW+
Sbjct: 109 HSMKNVCQRRRPGVQVEVAVREGKEKGAVVVEEAKQQKVSLLVLGHRKRSIMWRLMKRWA 168

Query: 189 SKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA 236
            +K   G   DYCIQNS  M IAVRRK  KLGGYLITTKRHKNFWLLA
Sbjct: 169 GRKNGGGSAVDYCIQNSPCMAIAVRRKGKKLGGYLITTKRHKNFWLLA 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099211|ref|XP_002311405.1| predicted protein [Populus trichocarpa] gi|222851225|gb|EEE88772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124224|ref|XP_002330136.1| predicted protein [Populus trichocarpa] gi|222871270|gb|EEF08401.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147835474|emb|CAN63968.1| hypothetical protein VITISV_022507 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541970|ref|XP_002512049.1| conserved hypothetical protein [Ricinus communis] gi|223549229|gb|EEF50718.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359491370|ref|XP_002265003.2| PREDICTED: uncharacterized protein LOC100258791 [Vitis vinifera] gi|297734093|emb|CBI15340.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357487921|ref|XP_003614248.1| hypothetical protein MTR_5g047050 [Medicago truncatula] gi|355515583|gb|AES97206.1| hypothetical protein MTR_5g047050 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359472832|ref|XP_002263089.2| PREDICTED: uncharacterized protein LOC100254361 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441119|ref|XP_004138331.1| PREDICTED: uncharacterized protein LOC101221050 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449529658|ref|XP_004171815.1| PREDICTED: uncharacterized LOC101221050 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
TAIR|locus:2178920285 AT5G17390 "AT5G17390" [Arabido 0.817 0.677 0.5 2.7e-45
TAIR|locus:2097735274 AT3G03290 "AT3G03290" [Arabido 0.703 0.605 0.531 3.3e-45
TAIR|locus:2044274165 MRH6 "AT2G03720" [Arabidopsis 0.694 0.993 0.487 1.1e-37
TAIR|locus:2033245223 AT1G69080 "AT1G69080" [Arabido 0.716 0.757 0.453 1.7e-36
TAIR|locus:2142130219 AT4G13450 "AT4G13450" [Arabido 0.449 0.484 0.365 4.5e-20
TAIR|locus:2194824213 AT1G44760 "AT1G44760" [Arabido 0.432 0.478 0.355 3.1e-12
TAIR|locus:2028516219 AT1G48960 "AT1G48960" [Arabido 0.627 0.675 0.260 8.2e-08
TAIR|locus:2049334193 RD2 "AT2G21620" [Arabidopsis t 0.584 0.715 0.236 6.2e-07
TAIR|locus:2178920 AT5G17390 "AT5G17390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 104/208 (50%), Positives = 142/208 (68%)

Query:    38 ETDQNVEF-LGGGNAEE-----VEYVGNESSGSERYGNKVMVVADSSLDAKGALEWALSH 91
             E D    F +GGG  ++     VE V  E+ G    GN+VMVV D +L + GALEWA++H
Sbjct:    84 EQDDAKSFNIGGGEGKKEAVAAVEAVEEEAEG----GNRVMVVVDKALASTGALEWAITH 139

Query:    92 TVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEG 151
             T+Q QDT+ LLY  AK  ++ K  K +K  ++  E +H++K  CQ K+PG++VEI   EG
Sbjct:   140 TLQPQDTLFLLY-FAKPFRKSKR-KNRKREVKTDELVHTLKKLCQTKRPGIEVEIRRLEG 197

Query:   152 KEK--GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGD-IADYCIQNSSRM 208
             K+K  G  IVEE+K+Q VSLLV+GQ +K  VW L+ RW+ K++   + +  YC++N+S M
Sbjct:   198 KDKDKGQKIVEESKKQQVSLLVVGQEKKPPVWRLLKRWAWKRRRGHEGVLKYCLENASCM 257

Query:   209 TIAVRRKSSKLGGYLITTKRHKNFWLLA 236
             TIAV+ K+ KLGGYLITTKRHKNFWLLA
Sbjct:   258 TIAVKPKNRKLGGYLITTKRHKNFWLLA 285
GO:0003674 "molecular_function" evidence=ND
TAIR|locus:2097735 AT3G03290 "AT3G03290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044274 MRH6 "AT2G03720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033245 AT1G69080 "AT1G69080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142130 AT4G13450 "AT4G13450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194824 AT1G44760 "AT1G44760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028516 AT1G48960 "AT1G48960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049334 RD2 "AT2G21620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00081020
hypothetical protein (237 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
pfam00582139 pfam00582, Usp, Universal stress protein family 8e-15
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 9e-15
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 6e-07
COG0589154 COG0589, UspA, Universal stress protein UspA and r 3e-06
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information 
 Score = 68.7 bits (168), Expect = 8e-15
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 70  KVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ-VKETKGKKLYLRAYEKL 128
           +++V  D S +++ ALEWAL    +    ++LL+VI         E   ++      E+ 
Sbjct: 4   RILVAVDGSEESERALEWALELAKRRGAELILLHVIDPEPSGAASEALEEEEEEELEEEE 63

Query: 129 HSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWS 188
              ++     + G  V   +  G +    I+E A+ ++  L+V+G R +S +  L+    
Sbjct: 64  AEAEALAAAAEAGGVVVEVVVRGGDPAEAILEVAEEEDADLIVMGSRGRSGLRRLL---- 119

Query: 189 SKKKAVGDIADYCIQNSSRMTIAVR 213
                +G +A+  ++++    + VR
Sbjct: 120 -----LGSVAEKVLRHAPCPVLVVR 139

The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity. Length = 139
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 236
PRK15005144 universal stress protein F; Provisional 99.91
PRK15456142 universal stress protein UspG; Provisional 99.91
PRK09982142 universal stress protein UspD; Provisional 99.9
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.9
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.88
PRK15118144 universal stress global response regulator UspA; P 99.87
PRK10116142 universal stress protein UspC; Provisional 99.86
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.84
PRK11175 305 universal stress protein UspE; Provisional 99.84
PRK11175305 universal stress protein UspE; Provisional 99.83
cd01987124 USP_OKCHK USP domain is located between the N-term 99.82
cd00293130 USP_Like Usp: Universal stress protein family. The 99.78
COG0589154 UspA Universal stress protein UspA and related nuc 99.72
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.54
PRK10490 895 sensor protein KdpD; Provisional 99.14
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.08
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.29
PLN03159 832 cation/H(+) antiporter 15; Provisional 96.82
PLN03159832 cation/H(+) antiporter 15; Provisional 96.81
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.58
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.4
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 95.22
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 93.52
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 93.48
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 93.29
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 93.25
PRK12342254 hypothetical protein; Provisional 93.12
PRK03359256 putative electron transfer flavoprotein FixA; Revi 92.95
COG2086260 FixA Electron transfer flavoprotein, beta subunit 91.7
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 90.85
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 90.61
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 90.51
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 89.09
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 88.87
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 87.42
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 87.42
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 87.34
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 87.08
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 84.74
PRK13820 394 argininosuccinate synthase; Provisional 84.58
PLN02948577 phosphoribosylaminoimidazole carboxylase 83.51
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 83.19
PF1316795 GTP-bdg_N: GTP-binding GTPase N-terminal 82.77
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 81.34
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 80.74
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 80.58
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information 
Probab=99.91  E-value=2.7e-23  Score=163.01  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=106.6

Q ss_pred             CCCEEEEEecCCHh--HHHHHHHHHHhhccCCCEEEEEEEEecCCCCch------h--HHHHHHHHHHHHHHHHHHHHhh
Q 037436           67 YGNKVMVVADSSLD--AKGALEWALSHTVQCQDTIVLLYVIAKSSKQVK------E--TKGKKLYLRAYEKLHSMKSTCQ  136 (236)
Q Consensus        67 ~~~~ILV~vD~s~~--s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~------~--~~~~~~~~~~~~~l~~~~~~~~  136 (236)
                      |+++||||+|+|+.  +..|++||+.+|+..+++|+++||++.......      .  ...+...+...+.++++.+.+.
T Consensus         1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (144)
T PRK15005          1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK   80 (144)
T ss_pred             CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence            68999999999998  579999999999999999999999974322100      0  1112333444555555555444


Q ss_pred             hhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436          137 LKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR  213 (236)
Q Consensus       137 ~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~  213 (236)
                        .+++++++++..|++ .+.|++++++.++||||||+++ +.+.++         ++||++++|+++++||||+||
T Consensus        81 --~~~~~~~~~v~~G~p-~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~---------llGS~a~~vl~~a~cpVlvVr  144 (144)
T PRK15005         81 --LPTDRVHVHVEEGSP-KDRILELAKKIPADMIIIASHR-PDITTY---------LLGSNAAAVVRHAECSVLVVR  144 (144)
T ss_pred             --CCCCceEEEEeCCCH-HHHHHHHHHHcCCCEEEEeCCC-CCchhe---------eecchHHHHHHhCCCCEEEeC
Confidence              457788999999999 8999999999999999999984 567777         899999999999999999996

>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 2e-08
3loq_A294 Universal stress protein; structural genomics, PSI 3e-06
3loq_A 294 Universal stress protein; structural genomics, PSI 4e-05
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 3e-06
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 3e-06
3dlo_A155 Universal stress protein; unknown function, struct 5e-06
3olq_A 319 Universal stress protein E; structural genomics, P 7e-06
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 4e-05
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 4e-05
2z08_A137 Universal stress protein family; uncharacterized c 6e-05
3fg9_A156 Protein of universal stress protein USPA family; A 1e-04
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 1e-04
3fdx_A143 Putative filament protein / universal stress PROT; 2e-04
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 38/179 (21%)

Query: 62  SGSERYGNKVMVVADSS---------LDAKGALEWALSHTVQCQDT---IVLLYVI---- 105
           SGSE    KVMV  ++S         +  K A EW L   V+   +   I+LL+V     
Sbjct: 1   SGSE--PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDE 58

Query: 106 --------AKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157
                     +S +      +    +    L    + C   + GV  E  I  G  K  +
Sbjct: 59  DGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKC--HEIGVGCEAWIKTGDPK-DV 115

Query: 158 IVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216
           I +E KR     LV+G R              +K  VG ++ +C++++    + ++R +
Sbjct: 116 ICQEVKRVRPDFLVVGSRGLGRF---------QKVFVGTVSAFCVKHAECPVMTIKRNA 165
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.93
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.92
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.92
3dlo_A155 Universal stress protein; unknown function, struct 99.91
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.91
3fg9_A156 Protein of universal stress protein USPA family; A 99.91
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.91
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.9
2z08_A137 Universal stress protein family; uncharacterized c 99.9
3tnj_A150 Universal stress protein (USP); structural genomic 99.9
3fdx_A143 Putative filament protein / universal stress PROT; 99.88
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.88
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.87
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.86
3olq_A 319 Universal stress protein E; structural genomics, P 99.85
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.85
3loq_A 294 Universal stress protein; structural genomics, PSI 99.85
3loq_A294 Universal stress protein; structural genomics, PSI 99.85
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.84
3olq_A319 Universal stress protein E; structural genomics, P 99.84
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.84
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.83
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.81
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.78
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 93.8
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 93.39
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.32
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 92.89
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 92.89
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 92.61
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 91.58
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 91.35
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 90.82
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 90.1
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 89.99
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 89.65
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 89.51
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 88.8
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 88.68
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 88.32
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 87.97
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 86.45
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 83.58
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 82.68
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.93  E-value=3.2e-25  Score=172.23  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=119.2

Q ss_pred             CCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCc------hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037436           65 ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQV------KETKGKKLYLRAYEKLHSMKSTCQLK  138 (236)
Q Consensus        65 ~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (236)
                      .+|+++||||+|+++.+..+++||+.+|...+++|+++||++.+....      .....+...+..++.++++.+.+.. 
T Consensus         2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-   80 (146)
T 3s3t_A            2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT-   80 (146)
T ss_dssp             CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            479999999999999999999999999999999999999998544331      1233455566777788888887764 


Q ss_pred             CCCc-eEEEEEEecCChHHHHHH-HHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436          139 KPGV-QVEIAITEGKEKGPIIVE-EAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR  213 (236)
Q Consensus       139 ~~~v-~v~~~v~~G~~~~~~I~~-~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~  213 (236)
                       .++ ++++.+..|++ .+.|++ +|++.++||||||+++++.+.++         ++||++++++++++||||+||
T Consensus        81 -~g~~~~~~~~~~g~~-~~~I~~~~a~~~~~dliV~G~~~~~~~~~~---------~~Gs~~~~vl~~~~~pVlvV~  146 (146)
T 3s3t_A           81 -TSAPNLKTEISYGIP-KHTIEDYAKQHPEIDLIVLGATGTNSPHRV---------AVGSTTSYVVDHAPCNVIVIR  146 (146)
T ss_dssp             -SSCCCCEEEEEEECH-HHHHHHHHHHSTTCCEEEEESCCSSCTTTC---------SSCHHHHHHHHHCSSEEEEEC
T ss_pred             -cCCcceEEEEecCCh-HHHHHHHHHhhcCCCEEEECCCCCCCcceE---------EEcchHHHHhccCCCCEEEeC
Confidence             388 89999999998 899999 99999999999999999999888         999999999999999999996
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 236
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 5e-06
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 1e-05
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 1e-04
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 5e-04
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 36/173 (20%)

Query: 70  KVMVVADSS---------LDAKGALEWALSHTVQCQDTIVLLYVI--------------- 105
           KVMV  ++S         +  K A EW L   V+   +   + ++               
Sbjct: 3   KVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDS 62

Query: 106 AKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQ 165
             +S +      +    +    L    + C     G +  I   + K+   +I +E KR 
Sbjct: 63  IYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKD---VICQEVKRV 119

Query: 166 NVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSK 218
               LV+G R              +K  VG ++ +C++++    + ++R + +
Sbjct: 120 RPDFLVVGSRG---------LGRFQKVFVGTVSAFCVKHAECPVMTIKRNADE 163
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.95
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.92
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.9
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.89
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.88
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.83
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 94.84
d3clsc1262 Small, beta subunit of electron transfer flavoprot 92.73
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 92.64
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 92.52
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 92.17
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 91.96
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 91.9
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 91.89
d1efpb_246 Small, beta subunit of electron transfer flavoprot 91.45
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 91.23
d1efvb_252 Small, beta subunit of electron transfer flavoprot 89.05
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 84.81
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 80.89
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 80.52
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 80.2
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=8e-27  Score=183.06  Aligned_cols=139  Identities=22%  Similarity=0.291  Sum_probs=119.8

Q ss_pred             CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCc--------------------hhHHHHHHHHHHH
Q 037436           66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQV--------------------KETKGKKLYLRAY  125 (236)
Q Consensus        66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~--------------------~~~~~~~~~~~~~  125 (236)
                      +||+|||||+|+|+++..+++||+.+|+..+++|+++||++......                    .....+...+.++
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999987433210                    0122334455667


Q ss_pred             HHHHHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC
Q 037436          126 EKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS  205 (236)
Q Consensus       126 ~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s  205 (236)
                      +.++++.+.+..  .++++++.+..|++ .+.|+++|++.++||||||+++++.+.++         ++||++++|++++
T Consensus        81 ~~l~~~~~~~~~--~gv~~~~~~~~G~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~---------~~GS~a~~vl~~s  148 (160)
T d1mjha_          81 NKMENIKKELED--VGFKVKDIIVVGIP-HEEIVKIAEDEGVDIIIMGSHGKTNLKEI---------LLGSVTENVIKKS  148 (160)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCSSCCTTC---------SSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh--cCCeEEEEEEeccH-HHHHhhhhhccccceEEeccCCCCccccc---------ccCcHHHHHHhcC
Confidence            777777777774  48999999999998 89999999999999999999999999999         9999999999999


Q ss_pred             CCeEEEEeCCC
Q 037436          206 SRMTIAVRRKS  216 (236)
Q Consensus       206 ~~PVlvV~~~~  216 (236)
                      +|||+|||++.
T Consensus       149 ~~pVlvV~~~~  159 (160)
T d1mjha_         149 NKPVLVVKRKN  159 (160)
T ss_dssp             CSCEEEECCCC
T ss_pred             CCCEEEEcCCC
Confidence            99999999874
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure