Citrus Sinensis ID: 037442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLLKGATKENDG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mgrrkiemkmvkdsnsrqvTFSKRRNGLFKKANELATLCAAHIAIVvfspggkpfsfghpsVDVVVQRLLNwemdpkdetnshvdAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLLkgatkendg
Flexible Loop (DISEMBL)
mgrrkiemkmvkdsnsrqvtfskrrNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAlkakglskyCKKSINDLGLDELLHMKASLEKLRENLKShiddmeasssllllkgatkendg
Low Complexity Region (SEG)
MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLLKGATKENDG
Disordered region (IsUnstruct)
**************************GLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWE************************QLIDLVNQLEIE******LDKALKAKGLSKYCKKSINDLGLDELLHM************************************
Disordered Region (DISOPRED)
MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLN********************VEQLNEQLIDLV************************YCKKSINDLGLDELLHMKASLEKLR****************************
Disordered Region (DISEMBL)
******************VTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPK*********EQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLLKGATKENDG
Disordered Region (DISPRO)
*****IEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKD**NSH***EQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASS**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKDETNSHVxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEMLDKALKAKGLSKYCKKSINDLGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLLKGATKENDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	no	no	0.838	0.505	0.461	3e-29
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.844	0.575	0.395	9e-27
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.5	0.375	0.468	7e-17
O82743	219	Agamous-like MADS-box pro	no	no	0.622	0.511	0.429	8e-17
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.411	0.280	0.527	1e-16
Q6VAM4	159	MADS-box transcription fa	no	no	0.555	0.628	0.428	2e-16
Q655V4	221	MADS-box transcription fa	no	no	0.694	0.565	0.387	3e-16
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.866	0.669	0.325	4e-16
Q40885	242	Floral homeotic protein A	N/A	no	0.916	0.681	0.324	4e-16
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.711	0.494	0.370	4e-16

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 3/154 (1%)

Query: 2   GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
           GR+KIEM  +K+ ++ QVTFSKRR+GLFKKA+EL TLC A +AIVVFSPG K FSFGHP+
Sbjct: 7   GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66

Query: 62  VDVVVQRLLNWEMDPKDETNSHV--DAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKA 119
           VD V+ R +N    P  + N+    +  + + V+ LN  L  +++QLE EKK+ + L K 
Sbjct: 67  VDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKI 126

Query: 120 L-KAKGLSKYCKKSINDLGLDELLHMKASLEKLR 152
             K K L  + +  + +L L +L   K +LE L+
Sbjct: 127 REKTKALGNWWEDPVEELALSQLEGFKGNLENLK 160

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  119 bits (299), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 15/167 (8%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           +GR+KI M  +K  + RQVTFSKRR GLFKKA+EL TLC A I I+VFSP  KPFSFGHP
Sbjct: 62  IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHP 121

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQE-----AKVEQLNEQLIDLVNQLEIEKKRGEM 115
           SV+ V+ R ++         N  +   Q+     A   +LN QL  +++++E EKK+G+ 
Sbjct: 122 SVESVLDRYVS-------RNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQA 174

Query: 116 LDKALKA---KGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHI 159
           +++  K    + +  + +K + ++ + +L  MK +LE+LR+ + +++
Sbjct: 175 MEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNM 221

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 1  MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
          MGR KI +K + +S SRQVTFSKRRNGL KKA ELA LC A + +++FS  G+ + F   
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQ 94
          S+  V++R      D K ET+S  D   E +  Q
Sbjct: 61 SMKSVIERY----SDAKGETSSENDPASEIQFWQ 90

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 9/121 (7%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           M R K EMK ++++ SRQVTFSKRRNGL KKA EL+ LC A +A+V+FSP  K + F   
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHV--DAEQEAKVEQLNEQLIDLVNQLEIEKKR--GEML 116
           S+   ++R   ++   K+  N+H   D  Q+A+ E     L   + QLEI K++  GE +
Sbjct: 61  SIAATIER---YQRRIKEIGNNHKRNDNSQQARDE--TSGLTKKIEQLEISKRKLLGEGI 115

Query: 117 D 117
           D
Sbjct: 116 D 116

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query: 1  MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
          MGR KIE+K ++++NSRQVTFSKRR GL KKA+EL+ LC A +A++VFS  GK F F   
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSST 60

Query: 61 SVDVVVQRLLNWEM 74
          S+   + R  N+++
Sbjct: 61 SMKKTLLRYGNYQI 74

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGR KIE+K + ++ SRQVTFSKRR+GLFKKA EL+ LC A + ++VFS   + + F   
Sbjct: 1   MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDA---EQEAKVEQLNEQLIDL 102
           S+  +++R    + DP    N+  +A   +QEA    L +QL +L
Sbjct: 61  SMKSIIERYNETKEDPHQTMNASSEAKLWQQEAA--SLRQQLHNL 103

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q655V4|MAD30_ORYSJ MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MG+ KIEMK ++D+  RQVTFSKRR G  KKANELA LC A + +VVFS  GK F F  P
Sbjct: 1   MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLE--IEKKRGEMLDK 118
            V ++++    +E+  ++      + + E  V ++  +L + ++QLE  + ++ GE L  
Sbjct: 61  PV-ILMELFHRYEITTRNTRLQETNRDDEQMVMEIT-RLRNEIDQLEASLRRQTGEDLSS 118

Query: 119 ALKAKGLSK 127
                 LS+
Sbjct: 119 VSTVDELSQ 127

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 99/172 (57%), Gaps = 16/172 (9%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGH- 59
           M R + E+K +++  SRQVTFSKRRNGL KKA EL+ LC A +A++VFSP G+ + F   
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 60  PSVDVVVQRLLNWEMDPKDETNSHVDAEQ-EAKVEQLNEQLIDLVNQLE-IEKKRGEMLD 117
           PS+   + R        K  T  HV+ +  +  ++Q+ +  + L  +LE +++ R ++L 
Sbjct: 61  PSLQKTIDRY-------KAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILG 113

Query: 118 KALKA------KGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163
           + L+       +GL    +KS++++ L +   ++  + KL+E  ++ + D E
Sbjct: 114 ENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNE 165

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 32/197 (16%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           +GR KIE+K ++++ +RQVTF KRRNGL KKA EL+ LC A +A++VFS  G+ + + + 
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQ-----LNEQLIDLVNQLEIEKKRGEM 115
           SV   ++R   ++    D +N+   AE  A+  Q     L  Q+ +L NQ          
Sbjct: 77  SVKATIER---YKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQ------NRNF 127

Query: 116 LDKALKA--------------KGLSKYCKKSINDLGLDELLHMKASLEKLREN---LKSH 158
           L ++L A              KG+SK   K  N+L   E+ +M+     L  N   L++ 
Sbjct: 128 LGESLAALNLRDLRNLEQKIEKGISKIRAKK-NELLFAEIEYMQKREIDLHNNNQYLRAK 186

Query: 159 IDDMEASSSLLLLKGAT 175
           I + E S  + L+ G++
Sbjct: 187 IAETERSQQMNLMPGSS 203

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Petunia hybrida (taxid: 4102)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 23/151 (15%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGR KIE+K +++S +RQVTFSKRR GL KKANELA LC A + +V+FS  GK F +  P
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLN--EQLIDLVNQLEIEKKRGEMLDK 118
           +    ++ L+      +  TNSH         E++N  +Q++     LE+ + + EM  +
Sbjct: 61  ACS--LRELIEQY---QHATNSH--------FEEINHDQQIL-----LEMTRMKNEM--E 100

Query: 119 ALKAKGLSKYCKKSINDLGLDELLHMKASLE 149
            L+  G+ +Y    ++ L LD++  ++  LE
Sbjct: 101 KLET-GIRRYTGDDLSSLTLDDVSDLEQQLE 130

Probable transcription factor.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224077624	178	predicted protein [Populus trichocarpa]	0.894	0.904	0.615	4e-51
255557363	172	mads box protein, putative [Ricinus comm	0.855	0.895	0.603	2e-48
449459362	173	PREDICTED: agamous-like MADS-box protein	0.816	0.849	0.585	2e-40
15226309	172	protein agamous-like 29 [Arabidopsis tha	0.933	0.976	0.494	7e-36
116831135	173	unknown [Arabidopsis thaliana]	0.933	0.971	0.494	9e-36
297823233	172	MADS-box family protein [Arabidopsis lyr	0.933	0.976	0.494	1e-35
357462355	207	Agamous-like MADS-box protein AGL62 [Med	0.85	0.739	0.496	4e-35
255557369	220	mads box protein, putative [Ricinus comm	0.855	0.7	0.454	5e-35
356534256	226	PREDICTED: agamous-like MADS-box protein	0.866	0.690	0.487	4e-34
225429161	214	PREDICTED: agamous-like MADS-box protein	0.966	0.813	0.443	8e-34

>gi|224077624|ref|XP_002305333.1| predicted protein [Populus trichocarpa] gi|222848297|gb|EEE85844.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 127/164 (77%), Gaps = 3/164 (1%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGRRKIE++MVKDSNSRQVTFSKRR G+FKKANELATLC   IAI+VFSPGGKPFSFGHP
Sbjct: 1   MGRRKIEIEMVKDSNSRQVTFSKRRTGVFKKANELATLCGVQIAIIVFSPGGKPFSFGHP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120
           +V+ V QR LN +  PK    S VD++QEA++E+LN QL D++ +L+ E+KRGE+L+KA+
Sbjct: 61  NVEFVAQRFLNRDKKPKVSAGSLVDSQQEARLEKLNSQLNDILRKLQYERKRGELLEKAM 120

Query: 121 KAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEA 164
           K KG      K I +L LDEL  MK  LE+L+E L+  + +MEA
Sbjct: 121 KLKGSE---PKLIGELNLDELRKMKGELEELQEKLRGRVTEMEA 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557363|ref|XP_002519712.1| mads box protein, putative [Ricinus communis] gi|223541129|gb|EEF42685.1| mads box protein, putative [Ricinus communis]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 126/164 (76%), Gaps = 10/164 (6%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGRRKIEMKMVKD++SRQVTFSKRR GLFKKANELATLCAA IAIVVFSPGGKPFSFGHP
Sbjct: 1   MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSFGHP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120
           +V  V +R LN +++ K   +      QEA++E+LN+QL D+  QL+ EKK+   L+KAL
Sbjct: 61  TVQSVAERFLNQDLNKKPRVSF-----QEARLEKLNKQLNDVQKQLQYEKKKEAFLNKAL 115

Query: 121 KAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEA 164
           KA G+ KY     +++  DELL+ K +LE+LRE +K+ + +MEA
Sbjct: 116 KASGIPKY-----DEMSADELLNFKKALEELREKMKARVVEMEA 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459362|ref|XP_004147415.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus] gi|449500611|ref|XP_004161146.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 117/157 (74%), Gaps = 10/157 (6%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGRRKIEMKMVKD  SRQVTFSKRRNGLFKKA +LATLC   IAIVVFSPGGK FSFG+P
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120
           +V+ VV R L  E     + N +    +   +E+ NE+L+DLV QL++EKK+GE+++K +
Sbjct: 61  NVEEVVDRYLGCEW----KANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEM 116

Query: 121 KAKG-LSKYCKKSINDLGLDELLHMKASLEKLRENLK 156
           K++G L K     I D+ L+ELL +K SLEKLR+N+K
Sbjct: 117 KSRGELMK-----IEDMDLNELLKLKESLEKLRKNVK 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226309|ref|NP_180991.1| protein agamous-like 29 [Arabidopsis thaliana] gi|3128222|gb|AAC26702.1| MADS-box protein (AGL29) [Arabidopsis thaliana] gi|20197155|gb|AAM14943.1| MADS-box protein (AGL29) [Arabidopsis thaliana] gi|91806315|gb|ABE65885.1| MADS-box family protein [Arabidopsis thaliana] gi|330253880|gb|AEC08974.1| protein agamous-like 29 [Arabidopsis thaliana]

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 120/172 (69%), Gaps = 4/172 (2%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGRRKI+M+MV+D N+RQVTFSKRR GLFKKA+ELATLC A + IVVFSPGGKPFS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQ-LEIEKKRGEMLDKA 119
           ++D V +R +  E D  D  +         K+++L+E+L DL+NQ +E EK+RGE   + 
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERL-DLLNQEVEAEKERGEKSQEK 118

Query: 120 LKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLL 171
           L++ G  ++ K+SI  L LDEL   K  L+ +   ++  ++ ++ASS L+LL
Sbjct: 119 LESAGDERF-KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLL 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831135|gb|ABK28522.1| unknown [Arabidopsis thaliana]

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 120/172 (69%), Gaps = 4/172 (2%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGRRKI+M+MV+D N+RQVTFSKRR GLFKKA+ELATLC A + IVVFSPGGKPFS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAKLGIVVFSPGGKPFSYGKP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQ-LEIEKKRGEMLDKA 119
           ++D V +R +  E D  D  +         K+++L+E+L DL+NQ +E EK+RGE   + 
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERL-DLLNQEVEAEKERGEKSQEK 118

Query: 120 LKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLL 171
           L++ G  ++ K+SI  L LDEL   K  L+ +   ++  ++ ++ASS L+LL
Sbjct: 119 LESAGDERF-KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLL 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823233|ref|XP_002879499.1| MADS-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297325338|gb|EFH55758.1| MADS-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 117/172 (68%), Gaps = 4/172 (2%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           MGRRKI+M+MV+D N+RQVTFSKRR GLFKKA+ELATLC A + IVVFSPGGKPFS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQ-LEIEKKRGEMLDKA 119
           ++D V +R +  E D  D  +         K+++++E L DL+NQ +E EK RGE   + 
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEKESGNNRPKLKRMSEHL-DLLNQEIEAEKNRGETDQEK 118

Query: 120 LKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLL 171
           L++ G  ++ K SI  L LDEL   K  L+ +   ++  ++ M+ASS L+LL
Sbjct: 119 LESAGDERF-KNSIETLTLDELNEYKDKLQTVHGRIECQVNHMQASSCLMLL 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462355|ref|XP_003601459.1| Agamous-like MADS-box protein AGL62 [Medicago truncatula] gi|355490507|gb|AES71710.1| Agamous-like MADS-box protein AGL62 [Medicago truncatula]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 110/157 (70%), Gaps = 4/157 (2%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           +GR+KI ++ +   +  QVTFSKRR+GLFKKA+EL TLC   IAIVVFSP  K FSFGHP
Sbjct: 8   LGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHP 67

Query: 61  SVDVVVQRLLNWEMDPKDETNSH--VDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118
            V+ ++ R L+   +P  E++SH  V+A + A V  LN QL  L++ LEIEKK+GE +D 
Sbjct: 68  EVESIIDRYLS--RNPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDH 125

Query: 119 ALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENL 155
             KA+ +  + +  +++LGL+ELL +K S+E LR+NL
Sbjct: 126 VRKARQMQFWWESPVDELGLNELLQLKVSIEDLRKNL 162

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557369|ref|XP_002519715.1| mads box protein, putative [Ricinus communis] gi|223541132|gb|EEF42688.1| mads box protein, putative [Ricinus communis]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 106/154 (68%)

Query: 2   GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
           GR+KI MK +++   R +TFSKRR+G++KKA+EL TLC A + I+VFSP GKPFSFGHPS
Sbjct: 9   GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFGHPS 68

Query: 62  VDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121
           ++ +  R L   + P D T+  V+A ++ ++ +LN+Q  +L+N+LE EK+RG ML K ++
Sbjct: 69  LESIANRFLGKNVPPSDNTHPLVEAHRKMRINELNKQYNELLNRLESEKERGSMLKKTIR 128

Query: 122 AKGLSKYCKKSINDLGLDELLHMKASLEKLRENL 155
            KG + + +  I+DL + EL  + A  E+L   L
Sbjct: 129 GKGCNNWWEAPIDDLNMQELEQIYAMFEELHSTL 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534256|ref|XP_003535673.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Glycine max]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 110/160 (68%), Gaps = 4/160 (2%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           +GR+KI ++ +   +  QVTFSKRR+GLFKKA+EL TLC   IA+VVFSP  K FSFGHP
Sbjct: 9   LGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELRTLCGVEIAVVVFSPADKAFSFGHP 68

Query: 61  SVDVVVQRLLNWEMDPKDETNSH--VDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118
            V+ ++ R      +P  E+++H  V+A + A V  LN QL  + N LEIEKKRG+ LD 
Sbjct: 69  EVESLIDRYTT--RNPPQESSAHHLVEAHRNANVRDLNMQLSQVFNHLEIEKKRGDDLDH 126

Query: 119 ALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSH 158
           A KA+    + +  I++LGL+ELL +KAS+E+L+ N++ H
Sbjct: 127 ARKARQRQFWWESPIDELGLNELLQLKASIEELKLNIEKH 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 114/178 (64%), Gaps = 4/178 (2%)

Query: 2   GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
           GR+KIE+  +   N  QVTFSKRR+GLFKKA+EL TLC A++AI+VFSP GK FSFGHP 
Sbjct: 8   GRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKVFSFGHPD 67

Query: 62  VDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121
           V+ +V R       P+      ++A + A V +LN QL  ++NQLE EKKRGE+L +  +
Sbjct: 68  VESIVDRFFTCNPIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGEILSQMRR 127

Query: 122 AKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDD--MEAS--SSLLLLKGAT 175
           A     + +  IN+L + EL  +K S+E+L++ + S  D   MEA+  S   ++ G++
Sbjct: 128 ASQTQCWWEAPINELSMPELEQLKVSMEELKKVVLSQGDKLLMEAANPSPFYMINGSS 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.933	0.976	0.494	6.3e-37
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.944	0.955	0.457	2e-33
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.844	0.508	0.458	4.9e-30
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.872	0.594	0.401	7.3e-27
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.866	0.631	0.391	2e-24
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.855	0.620	0.375	2.9e-23
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.827	0.659	0.384	1.3e-20
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.855	0.743	0.335	1.2e-19
UNIPROTKB|Q9ATE9	216	FBP20 "MADS-box transcription	0.833	0.694	0.323	2.2e-18
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.955	0.945	0.283	2.8e-18

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 85/172 (49%), Positives = 120/172 (69%)

Query:     1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
             MGRRKI+M+MV+D N+RQVTFSKRR GLFKKA+ELATLC A + IVVFSPGGKPFS+G P
Sbjct:     1 MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query:    61 SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQ-LEIEKKRGEMLDKA 119
             ++D V +R +  E D  D  +         K+++L+E+L DL+NQ +E EK+RGE   + 
Sbjct:    61 NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERL-DLLNQEVEAEKERGEKSQEK 118

Query:   120 LKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLL 171
             L++ G  ++ K+SI  L LDEL   K  L+ +   ++  ++ ++ASS L+LL
Sbjct:   119 LESAGDERF-KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLL 169

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 80/175 (45%), Positives = 118/175 (67%)

Query:     1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
             MGRRKI+M+ V+D+N++QVTFSKRR GLFKKA+ELATLC A + IVVFSPG KP+SFG P
Sbjct:     1 MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query:    61 SVDVVVQRLLNW--EMDPKD--ETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEML 116
             + DV+ +R  N   E +  D  ET+ +    +  + +++ ++L  +  + E EKK GE L
Sbjct:    61 NFDVIAERFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGEDL 120

Query:   117 DKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLL 171
              K L++    K+  K I +L L+EL   +A ++K+   ++S+I  M+ASSSL+ L
Sbjct:   121 HKWLESAEQDKF-NKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSLMFL 174

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 71/155 (45%), Positives = 101/155 (65%)

Query:     2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
             GR+KIEM  +K+ ++ QVTFSKRR+GLFKKA+EL TLC A +AIVVFSPG K FSFGHP+
Sbjct:     7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66

Query:    62 VDVVVQRLLNWE-MDPKDETNSHV-DAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKA 119
             VD V+ R +N   + P    N  + +  + + V+ LN  L  +++QLE EKK+ + L K 
Sbjct:    67 VDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKI 126

Query:   120 L-KAKGLSKYCKKSINDLGLDELLHMKASLEKLRE 153
               K K L  + +  + +L L +L   K +LE L++
Sbjct:   127 REKTKALGNWWEDPVEELALSQLEGFKGNLENLKK 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 65/162 (40%), Positives = 104/162 (64%)

Query:     1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
             +GR+KI M  +K  + RQVTFSKRR GLFKKA+EL TLC A I I+VFSP  KPFSFGHP
Sbjct:    62 IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHP 121

Query:    61 SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120
             SV+ V+ R ++   +     +  +     A  E LN QL  +++++E EKK+G+ +++  
Sbjct:   122 SVESVLDRYVS-RNNMSLAQSQQLQGSPAASCE-LNMQLTHILSEVEEEKKKGQAMEEMR 179

Query:   121 KA---KGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHI 159
             K    + +  + +K + ++ + +L  MK +LE+LR+ + +++
Sbjct:   180 KESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNM 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 63/161 (39%), Positives = 100/161 (62%)

Query:     1 MGRRKIEM-KMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGH 59
             +GRRKIE+ KM  +SN  QVTFSKRR+GLFKK +EL TLC A IAI+VFSP GK +SFGH
Sbjct:     6 LGRRKIELVKMTNESNL-QVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGH 64

Query:    60 PSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKK-RGEMLDK 118
             P+V+ ++   L   +   + TN   ++  + +++ LNE L +++ + E E++ +  ++  
Sbjct:    65 PNVNKLLDHSLG-RVIRHNNTN-FAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query:   119 ALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHI 159
               + K   K+ + S  +L L +   MK  LE L++ +   +
Sbjct:   123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 60/160 (37%), Positives = 100/160 (62%)

Query:     2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
             GR+KIEMK +++ ++ QVTFSKRR GLFKKA+EL TL  A I ++VFSPGGK FSFGHPS
Sbjct:     7 GRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPS 66

Query:    62 VDVVVQRLLNWEMDPK--DETNSH---VDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEML 116
             V  ++ R  N   +       N++   V+   +  ++ LN  L +++   E EK++  +L
Sbjct:    67 VQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQKRMVL 126

Query:   117 DKALKAKG-LSKYCKKSINDLGLDELLHMKASLEKLRENL 155
             D   +++  +  + +K + DL ++E   + ++L+ +++ L
Sbjct:   127 DLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKL 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 60/156 (38%), Positives = 93/156 (59%)

Query:     1 MGRRKIEM-KMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGH 59
             +GRRK+E+ KM K+SN  QVTFSKR+ GLFKKA+E  TLC A IA++VFSP GK FSFGH
Sbjct:     6 LGRRKVEIVKMTKESNL-QVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGH 64

Query:    60 PSVDVVVQRLLNWEMDPKDETNSHVDAEQ-EAKVEQLNEQLIDLVNQLEIEKKRGEM-LD 117
             P+VDV++       +      N+++D    +  V+ LN+   ++  ++E E+K  +    
Sbjct:    65 PNVDVLLDHFRGCVVG---HNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query:   118 KALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRE 153
                + +   ++  KS  +L L +   M   L+ L++
Sbjct:   122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKK 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 53/158 (33%), Positives = 92/158 (58%)

Query:     2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
             G++KIEMK V++   R +TFSKR+ G+FKK NEL  +C   +A ++FS   KP++F HPS
Sbjct:    14 GKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFAHPS 73

Query:    62 VDVVVQRLLN-WEMDP--KDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118
             +  V  RL N    +P  +D+T   V+A ++ ++  L +++  L  +L ++ ++ ++L +
Sbjct:    74 MKKVADRLKNPSRQEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEKLKLLKE 133

Query:   119 ALKAKGLSK-YCKKSINDLGLDELLHMKASLEKLRENL 155
             +   K L K +       L   EL     ++ +LR+NL
Sbjct:   134 SRNEKKLDKMWWNFPSEGLSAKELQQRYQAMLELRDNL 171

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q9ATE9 FBP20 "MADS-box transcription factor FBP20" [Petunia x hybrida (taxid:4102)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 53/164 (32%), Positives = 91/164 (55%)

Query:     1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
             M R K +M+ ++++ SRQVTFSKRRNGL KKA EL+ LC A + +V+FSP GK + F   
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLVIFSPRGKQYEFSSS 60

Query:    61 SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLE-IEKKRGEMLDKA 119
             S+  +++R        K  T   V  E +A  + L  +   L+ ++E +E  + ++L + 
Sbjct:    61 SMQEIIERY-------KGHTKDKVQTENQAGEQNLQHETAGLMKKIEFLETSKRKLLGEG 113

Query:   120 L------KAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKS 157
             L      + + + K  ++S++ +   ++   K  +EKL E  K+
Sbjct:   114 LGSCTLEELQKIEKQLERSVSIIRARKMQVFKEQIEKLNEKEKA 157

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 51/180 (28%), Positives = 101/180 (56%)

Query:     2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
             G++KI +K ++    R VTFSKR NG++ K +EL+ LC   +A + +S  GKP++FG PS
Sbjct:     8 GKQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFGSPS 67

Query:    62 VDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121
                V +R LN +      ++  ++A ++AK+++L ++   LV +L++++ + +      +
Sbjct:    68 FQAVAERFLNGDASSSSSSSLVMNAHKQAKIQELCKKYNRLVEELKVDEVKVKKAAALAE 127

Query:   122 AKGLSK--YCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLLKGATKEND 179
              + ++K  + K   ND+  D   H KA  +K+ E  +   D +   ++  + +G  + N+
Sbjct:   128 TRVVNKDVWWKVDPNDVK-D---HEKA--KKMMEKYQELYDKLCEQAASRIKRGHDENNN 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IV000362 hypothetical protein (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	4e-33
smart00432	59	smart00432, MADS, MADS domain	1e-28
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-28
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	5e-25
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-15
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	6e-11

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  112 bits (282), Expect = 4e-33
 Identities = 36/70 (51%), Positives = 53/70 (75%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR KIE+K +++S +RQVTFSKRRNGL KKA+EL+ LC A +A+++FS  GK + F  PS
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 VDVVVQRLLN 71
          ++ +++R   
Sbjct: 61 MEKIIERYQK 70

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  100 bits (252), Expect = 1e-28
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
          GRRKIE+K +++  +RQVTFSKRRNGLFKKA+EL+ LC A +A++VFSP GK + F  P
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 99.9 bits (250), Expect = 2e-28
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
          GR KIE+K +++  SRQVTFSKRRNGLFKKA+EL+ LC A +A++VFSP GK + F   
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 91.9 bits (229), Expect = 5e-25
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++K +++   R VTFSKRR GLFKKA+EL+TLC A +A++V+SP GK + F   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 65.9 bits (161), Expect = 3e-15
 Identities = 26/49 (53%), Positives = 40/49 (81%)

Query: 9  KMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSF 57
          K +++ ++RQVTFSKRRNG+FKKA+EL+ LC A +A+++FS  GK + +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 59.6 bits (144), Expect = 6e-11
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           +  RKI +  + +   R VTFSKR++G+ KKA EL+ L    + ++V S  G   +F  P
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  SVDVVVQRLL 70
            ++ VV+ L 
Sbjct: 141 KLESVVKSLE 150

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.97
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.95
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.81
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.49
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.13
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.02

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=2.8e-35  Score=226.33  Aligned_cols=86  Identities=53%  Similarity=0.892  Sum_probs=78.2

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCC--hhHHHHHhhccCCCCCC
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS--VDVVVQRLLNWEMDPKD   78 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~ps--v~~Vl~ry~~~~~~~~~   78 (180)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|++|+  |+.|+++|.....+...
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999987  99999999998776655


Q ss_pred             CCCccchh
Q 037442           79 ETNSHVDA   86 (180)
Q Consensus        79 ~~~~~~e~   86 (180)
                      +.....+.
T Consensus        81 ~~~~~~~~   88 (195)
T KOG0014|consen   81 KKRVNLES   88 (195)
T ss_pred             ccccchhh
Confidence            54443333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=1.4e-35  Score=195.03  Aligned_cols=73  Identities=49%  Similarity=0.846  Sum_probs=71.4

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCC
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEM   74 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~   74 (180)
                      ||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|++|++++|++||++.+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998864

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=3.6e-32  Score=181.46  Aligned_cols=74  Identities=49%  Similarity=0.795  Sum_probs=70.6

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCC-hhHHHHHhhccCCC
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS-VDVVVQRLLNWEMD   75 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~ps-v~~Vl~ry~~~~~~   75 (180)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++++ +.+++++|...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL   75 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence            899999999999999999999999999999999999999999999999999999998877 99999999988753

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=5.8e-32  Score=168.13  Aligned_cols=59  Identities=63%  Similarity=1.073  Sum_probs=58.1

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCC
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP   60 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~p   60 (180)
                      ||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.97  E-value=3.9e-31  Score=164.56  Aligned_cols=59  Identities=61%  Similarity=0.991  Sum_probs=57.7

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCC
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP   60 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~p   60 (180)
                      ||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999876

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.95  E-value=6e-29  Score=149.74  Aligned_cols=51  Identities=53%  Similarity=0.963  Sum_probs=46.5

Q ss_pred             eEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCC
Q 037442            9 KMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGH   59 (180)
Q Consensus         9 k~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~   59 (180)
                      |+|+|++.|++||+||+.||||||+|||+||||+||+|||||+|++|+|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.81  E-value=4.2e-21  Score=151.51  Aligned_cols=75  Identities=39%  Similarity=0.633  Sum_probs=68.6

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCCh---------hHHHHHhhcc
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSV---------DVVVQRLLNW   72 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv---------~~Vl~ry~~~   72 (180)
                      ||+||+|++|+|+-.|.+||||||.||||||+|||||.|.+|-++|.|.+|.+|+|++|..         +++|..+++.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999999999863         4677777777


Q ss_pred             CCCC
Q 037442           73 EMDP   76 (180)
Q Consensus        73 ~~~~   76 (180)
                      +..+
T Consensus       143 pd~~  146 (338)
T KOG0015|consen  143 PDTP  146 (338)
T ss_pred             CCCC
Confidence            6543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.49  E-value=1.3e-14  Score=119.71  Aligned_cols=67  Identities=36%  Similarity=0.592  Sum_probs=63.1

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHH
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQ   67 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~   67 (180)
                      |||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|..+.|+.|..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            7899999999999999999999999999999999999999999999999999999999987655543

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.13  E-value=1.9e-05  Score=54.33  Aligned_cols=65  Identities=23%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 037442           98 QLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSS  167 (180)
Q Consensus        98 ~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~  167 (180)
                      .+..+..++..++..++.|+..+++..|     .++++|+++||..|+..|+..+..|+.|+.++...+-
T Consensus        13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~G-----edL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i   77 (100)
T PF01486_consen   13 QHEELQQEIAKLRKENESLQKELRHLMG-----EDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI   77 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            4555666666666677777777777765     4499999999999999999999999999999875543

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.02  E-value=6.4  Score=29.29  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037442           92 VEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEAS  165 (180)
Q Consensus        92 ~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~  165 (180)
                      +..+..++..|++++..++.....+...+...         ...++.+||..-...|+.-...+..|+..|..+
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L---------~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~  138 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASL---------SSEPTNEELREEIEELEEEIEELEEKLEKLRSG  138 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44455556666666666666666665555443         347788999999999988888899999888853

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		8e-13
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		8e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		4e-12
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		7e-12
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-11
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-11
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		2e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 1  MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
          MGR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   + F +   
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 SVDVVVQRLLNWEMDPKDETNSHV 84
           +D V+ +   +    +  TN+ +
Sbjct: 61 DMDRVLLKYTEYSEPHESRTNTDI 84

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 VDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQ 98
          +D V+ +   +    +  TNS +       VE LN++
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDI-------VEALNKK 90

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   + F +    
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 VDVVVQRLLNWEMDPKDETNSHV 84
          +D V+ +   +    +  TN+ +
Sbjct: 61 MDRVLLKYTEYSEPHESRTNTDI 83

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ L  A IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 VDVVVQRLLNWEMDPKDETNSHV 84
          +D V+ +   +    +  TNS +
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDI 83

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 VDVVVQRLLNW 72
          +D V+ +   +
Sbjct: 61 MDKVLLKYTEY 71

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 VDVVV 66
          +D V+
Sbjct: 61 MDKVL 65

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 3  RRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSV 62
          RRKIE+K +++   R VTFSKR++G+ KKA EL+ L    + ++V S  G  ++F  P  
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 63 DVVV 66
          + +V
Sbjct: 78 EPIV 81

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSF 57
          GR KI+M+ + +   R  TFSKR+ G+ KKA EL+TL    + ++V S  G  ++F
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFG 58
          GR KI+M+ + +   R  TFSKR+ G+ KKA EL+TL    + ++V S  G  ++F 
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	4e-33
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-32
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-30
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	6e-28
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-26
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  113 bits (283), Expect = 4e-33
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 1   MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
            GR KI+M+ + +   R  TFSKR+ G+ KKA EL+TL    + ++V S  G  ++F   
Sbjct: 9   RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61  SVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQ 94
            +  ++       +      +       +   +Q
Sbjct: 69  KLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQ 102

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  110 bits (277), Expect = 3e-32
 Identities = 23/68 (33%), Positives = 38/68 (55%)

Query: 1  MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           GR KI+M+ + +   R  TFSKR+ G+ KKA EL+TL    + ++V S  G  ++F   
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 SVDVVVQR 68
           +  ++  
Sbjct: 70 KLQPMITS 77

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  106 bits (266), Expect = 1e-30
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query: 1  MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
            RRKIE+K +++   R VTFSKR++G+ KKA EL+ L    + ++V S  G  ++F  P
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 SVDVVVQR 68
            + +V +
Sbjct: 76 KFEPIVTQ 83

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 99.4 bits (248), Expect = 6e-28
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 VDVVVQRLLNWEMDPKDETNSHVDAEQEAK 91
          +D V+ +   +    +  TNS +      K
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDIVEALNKK 90

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 95.5 bits (238), Expect = 1e-26
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 VDVVVQR 68
          +D V+ +
Sbjct: 61 MDKVLLK 67

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)

Query: 145 KASLEKLRENLKSHIDDMEASSSLLLLKGATKE 177
           K +L+KL+ +LK + DD   S+  L +K AT E
Sbjct: 19  KQALKKLQASLKLYADD---SAPALAIK-ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.2e-39  Score=211.98  Aligned_cols=74  Identities=38%  Similarity=0.706  Sum_probs=70.3

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCCC
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMD   75 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~~   75 (180)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.|++||+..+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988754

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.3e-39  Score=215.62  Aligned_cols=78  Identities=36%  Similarity=0.674  Sum_probs=74.8

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCCCCCCC
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKDE   79 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~~~~~~   79 (180)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|+||+++.||+||+..+++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988765544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=6.9e-38  Score=211.86  Aligned_cols=72  Identities=36%  Similarity=0.622  Sum_probs=70.0

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhcc
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNW   72 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~   72 (180)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999654

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1e-37  Score=208.50  Aligned_cols=71  Identities=32%  Similarity=0.542  Sum_probs=68.6

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhc
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLN   71 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~   71 (180)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987643

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=5.3e-37  Score=208.83  Aligned_cols=69  Identities=33%  Similarity=0.562  Sum_probs=67.5

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHh
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRL   69 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry   69 (180)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	6e-30
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	9e-30
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-29

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 6e-30
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
          GR+KI++  + D  +RQVTF+KR+ GL KKA EL+ LC   IA+++F+   K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 VDVVVQR 68
          +D V+ +
Sbjct: 61 MDKVLLK 67

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 9e-30
 Identities = 23/68 (33%), Positives = 38/68 (55%)

Query: 1  MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60
           GR KI+M+ + +   R  TFSKR+ G+ KKA EL+TL    + ++V S  G  ++F   
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 SVDVVVQR 68
           +  ++  
Sbjct: 62 KLQPMITS 69

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 1e-29
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 2  GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS 61
           RRKIE+K +++   R VTFSKR++G+ KKA EL+ L    + ++V S  G  ++F  P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 VDVVVQRLLNWEMDPKDETNSHVDAEQE 89
           + +V +        ++   + ++A  +
Sbjct: 63 FEPIVTQQEG-----RNLIQACLNAPDD 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-40  Score=208.95  Aligned_cols=70  Identities=40%  Similarity=0.735  Sum_probs=68.9

Q ss_pred             CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhc
Q 037442            2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLN   71 (180)
Q Consensus         2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~   71 (180)
                      ||+||+|++|+|+.+|+|||+|||.||||||+|||+||||+||+|||||+|++|+|+||++++|++||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=205.82  Aligned_cols=72  Identities=32%  Similarity=0.518  Sum_probs=69.9

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhcc
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNW   72 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~   72 (180)
                      +||+||+|++|+|+.+|+|||+|||.||||||+|||+||||+||+|||||+|++|+|+||+++.|+++|...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999654

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-38  Score=205.93  Aligned_cols=73  Identities=36%  Similarity=0.618  Sum_probs=70.5

Q ss_pred             CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccC
Q 037442            1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWE   73 (180)
Q Consensus         1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~   73 (180)
                      -||+||+|++|+|+.+|+|||+|||.||||||+|||+||||+||||||||+|++|+|+||+|+.|+++|...+
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhccc
Confidence            3899999999999999999999999999999999999999999999999999999999999999999998654