Citrus Sinensis ID: 037461

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------108

MTIMTPAPIDQQEDEEMLVPHSDLADNHQPMEVVAQPETANAVENNQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN

cccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEcccEEEEEEEEcccccccEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEEccEEEEEccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEcccccccccccccEEEEEEEcccccHHHHHHHccccEEcccccccccccccccccEEcEEEccccccEEEEEcccEEEccccEEEccccEEEccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEEEcccccccccccccccccEEEEEEEccccccEEEEEEEEEEccccccccHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHccEEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccHHHHHHcccccccEEEEEEcccccccccccEEEEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHcccccccccEEEEEEEccEEEEEcccccccccccccccEEEEEEccHHHHccccccEEEEEEEEcccccccccccccccccEEEEEEccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHcccccccccccccccEEEEccccccccccccccccccccccEEEcc

ccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEEEEccHHHcccccccccEEEEccccEEEEEEEccccccEEEEEEEcccccccccccEEEEEEEEEEEcccccccEEEEcEEEEEcccccccccccHccHHHHcccccccEEccEEEEEEEEEEEcccccEEcccccccccccEccccccHHHHHHHHHHHccHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHHccccEccHHHHHHccccccHHHccEcHHHHHHHHHHHHHHHHcccccccHHHHHHcEEEEEEEEEcccccEEEEEEEEccEEEEcccccEHHHHHHHHHccEEEcHHHcEEcccccEEcEEEEEEEcccccEEEEEEEcEEEEccccEEEEcccccEcccEEEcHHHEcccEccEccEEEEEEEEEEEEEccEEEccEEEEEEEEccccccccEEEEccEEEEccHHHHcHHHccccccccccccccccccccccccccEEEEEEEEHccHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcHHHHHHHccccccccccccccccEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccHHHcccccEEEEEEccccccccccccccHHHHHHHHHccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccHHHHHHccccccccEEEEEEEEccHHHHHccccEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHcccccccccEEEEEEEccEEEEEcccccccccccccccEEEEEEccHHHccccccccEEEEEEEcccccccccHHHcccccEEEEEEccccHHHHHHHHHHHccccHHHHHHEEEEEEEccccccccccccHHHHHHcccccccccHEcccccccccccccccccccccccccEEEEEc

mtimtpapidqqedeemlvphsdladnhqpmevvaqpetanavennqplddppssrftwrienfsrlntkkhySEIFIVGGFKWRVlifpkgnnvdhLSMYLdvadssslpygwsryAQFSLAVINQIHSKYSVRKDTQHqfnaresdwgftsfmplgelydpnrgylvndtLIVEAEVIVRRVVDYwsydskketgyvglknqgaTCYMNSLLQTLFHIPYfrkavyhmpttendmpsgsipLALQSLFYklqysdssvatkeltksfgwdtydsfMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDykstrkesfYDLQLDVKGCRDVYASFDKYVEVErlegdnkyhaeqyglqdakkgvlfidfppvLQLQLKRFEYDFMRDTMVKINdryefplqldldrengkylspdadrsvRNLYTLHSVLVHsggvhgghyyafirptlsdqwykfdderVTKEDLKRALEEqyggeeelpqtnpgfnntpfkftkySNAYMLVYIREsdkdkiicnVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYfdlvdhdkvrsfriqkqipfnlfkvgqlREVSNKVHNAELKLFLEvergpdlrpiappektkEDILLFFKLYDPEKEELRYVGRLFvkstgkpmeylpklnemagyapdeeidlyeeikfepsvmcepiekrctfrasqledgdiicfqkstpiegvgkfrypevpsfldyvhNRQVvhfrslekpkeddfclemsklytyDDVVERVAQqlglddpskirltshncysqqpkpqpikyrgvdhLSDMLIHynqtsdvlyyevldiplpelqclkTLKVAFHHatkdevsvhtirlpkqstvgdVINDLKTKVELSQPDAELRLLEVFYHKIYkifplnekieNINDQYWTLRaeeipeeeknlgphdrlIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFlslgrpeylqdtdivssrfqrrdVYGAWEQYlglehsdsapkrayaanqnrhtyekpvkiyn

mtimtpapidqqedEEMLVPHSDLADNHQPMEVVAQPETANAVennqplddppssrftWRIENFsrlntkkhysEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEqyggeeelpqtnpgfnnTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKeqeekehkkkekaeahLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELklflevergpdlrpiappektkedILLFFKLYDPEKEELRYVGrlfvkstgkpmeylPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFrslekpkeddfCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTShncysqqpkpqpIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATkdevsvhtirlpkqstvgdvINDLKTkvelsqpdaeLRLLEVFYHKIYKifplnekieNINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFlslgrpeylQDTDIVSSRFQRRDVYGAWEQYLglehsdsapkrayaanqnrhtyekpvkiyn

MTIMTPAPIDQQEDEEMLVPHSDLADNHQPMEVVAQPETANAVENNQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLiveaevivrrvvDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTlhsvlvhsggvhgghYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAehlrerlkkeqeekehkkkekaeaHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN

********************************************************FTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTE*****GSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERV*************************FNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQ**************************AHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERG************KEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCY********IKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIP****NLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGL****************************

***MT*********************************************DPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGK********SVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRA**************************KYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPI*GVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQP*PQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPK***********YEKPVKIYN

MTIMTPAPIDQQEDEEMLVPHSDLADNHQPMEVVAQPETANAVENNQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERL*************KAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN

********************************************NNQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSA***********HTYEKPVKIYN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MTIMTPAPIDQQEDEEMLVPHSDLADNHQPMEVVAQPETANAVENNQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEVIVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1077	2.2.26 [Sep-21-2011]
Q9FPT1		1116	Ubiquitin carboxyl-termin	yes	no	0.996	0.961	0.811	0.0
Q84WU2		1115	Ubiquitin carboxyl-termin	no	no	0.997	0.963	0.804	0.0
Q4VSI4		1103	Ubiquitin carboxyl-termin	yes	no	0.909	0.888	0.362	1e-166
Q6A4J8		1103	Ubiquitin carboxyl-termin	yes	no	0.909	0.888	0.361	1e-165
Q93009		1102	Ubiquitin carboxyl-termin	yes	no	0.927	0.906	0.357	1e-165
Q6U7I1		1101	Ubiquitin carboxyl-termin	yes	no	0.926	0.906	0.356	1e-162
Q9UTT1		1129	Ubiquitin carboxyl-termin	yes	no	0.914	0.872	0.352	1e-161
Q9VYQ8		1129	Ubiquitin carboxyl-termin	yes	no	0.900	0.859	0.356	1e-156
Q09879		1108	Probable ubiquitin carbox	no	no	0.876	0.851	0.350	1e-149
P50101		1230	Ubiquitin carboxyl-termin	yes	no	0.497	0.435	0.437	1e-127

>sp\|Q9FPT1\|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2	Back alignment and function desciption

 Score = 1859 bits (4815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1120 (81%), Positives = 996/1120 (88%), Gaps = 47/1120 (4%)

Query: 1    MTIMTPAPIDQQEDEEMLVPHSDLADN-HQPMEVVAQPETANAVENNQPLDDPPSSRFTW 59
            MT+MTP P+DQ EDEEMLVP+SDL D   QPMEV  QPETA +   NQP +DPP+ +FTW
Sbjct: 1    MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEV-TQPETAASTVENQPAEDPPTLKFTW 59

Query: 60   RIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQ 119
             I NFSR NT+KHYS++F+VGG+KWR+LIFPKGNNVDHLSMYLDV+D++SLPYGWSRYAQ
Sbjct: 60   TIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYAQ 119

Query: 120  FSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179
            FSLAV+NQIH++Y+VRK+TQHQFNARESDWGFTSFMPL ELYDP+RGYLVNDT++VEAEV
Sbjct: 120  FSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEV 179

Query: 180  IVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPS 239
             VR+V+DYWSYDSKKETG+VGLKNQGATCYMNSLLQTL+HIPYFRKAVYHMPTTEND P+
Sbjct: 180  AVRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPT 239

Query: 240  GSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKG 299
             SIPLALQSLFYKLQY+D+SVATKELTKSFGWDTYDSFMQHDVQELNRVL EKLEDKMKG
Sbjct: 240  ASIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKG 299

Query: 300  TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERL 359
            TVVEGTIQQLFEGHHMNYIECINVD+KSTRKESFYDLQLDVKGC+DVYASFDKYVEVERL
Sbjct: 300  TVVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERL 359

Query: 360  EGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL 419
            EGDNKYHAE +GLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL+LDL
Sbjct: 360  EGDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDL 419

Query: 420  DRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE 479
            DRE+GKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE
Sbjct: 420  DREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE 479

Query: 480  DLKRALEEQYGGEEELPQTNPGFNNT-PFKFTKYSNAYMLVYIRESDKDKIICNVDEQDI 538
            DLKRALEEQYGGEEELPQTNPGFNN  PFKFTKYSNAYMLVYIRESDKDKIICNVDE+DI
Sbjct: 480  DLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDI 539

Query: 539  AEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSF 598
            AEHLR RLKKEQEEKE K++ KA+AHLYT+IKVARD+DL EQIGKDIYFDLVDHDKVRSF
Sbjct: 540  AEHLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSF 599

Query: 599  RIQKQIPFNLFK-----------------------------------------VGQLREV 617
            RIQKQ PF  FK                                         VGQ+RE 
Sbjct: 600  RIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREA 659

Query: 618  SNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTG 677
            SNK + AELKLFLEVE   DLRPI PPEK+KEDILLFFKLYDPEK  L Y GRL VKS+ 
Sbjct: 660  SNKANTAELKLFLEVEHL-DLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSS 718

Query: 678  KPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKS 737
            KPM+   KLNEM G+APDEEI+L+EEIKFEP VMCE ++K+ +FR  Q+EDGDIICFQK 
Sbjct: 719  KPMDITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKP 778

Query: 738  TPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQ 797
               + + +  YP VPSFL+YV NRQ+V FR+LEKPKED+F LE+SK +TYDDVVE+VA++
Sbjct: 779  LVNKEI-ECLYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEK 837

Query: 798  LGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPEL 857
            LGLDDPSK+RLTSHNCYSQQPKPQPIKYRGVDHLSDML+HYNQTSD+LYYEVLDIPLPEL
Sbjct: 838  LGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPEL 897

Query: 858  QCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHK 917
            Q LKTLKVAFHHATK+EV +H IRLPKQSTVGDVIN+LKTKVELS PDAELRLLEVFYHK
Sbjct: 898  QGLKTLKVAFHHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHK 957

Query: 918  IYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFG 977
            IYKIFP  E+IENINDQYWTLRAEEIPEEEKN+GP+DRLI VYHF KET QNQ Q+QNFG
Sbjct: 958  IYKIFPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQ-QVQNFG 1016

Query: 978  EPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRR 1037
            EPFFLVIHEGETL+EIK RIQ+KL V DE+FAKWKFAF+S+GRPEYLQDTD+V +RFQRR
Sbjct: 1017 EPFFLVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRR 1076

Query: 1038 DVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 1077
            DVYGA+EQYLGLEH+D+ PKRAYAANQNRH YEKPVKIYN
Sbjct: 1077 DVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp\|Q84WU2\|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1	Back alignment and function description

>sp\|Q4VSI4\|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1	Back alignment and function description

>sp\|Q6A4J8\|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1	Back alignment and function description

>sp\|Q93009\|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2	Back alignment and function description

>sp\|Q6U7I1\|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1	Back alignment and function description

>sp\|Q9UTT1\|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2	Back alignment and function description

>sp\|Q9VYQ8\|UBP7_DROME Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster GN=Usp7 PE=1 SV=1	Back alignment and function description

>sp\|Q09879\|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp5 PE=3 SV=3	Back alignment and function description

>sp\|P50101\|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1077
449448842		1118	PREDICTED: ubiquitin carboxyl-terminal h	0.999	0.962	0.880	0.0
356501302		1118	PREDICTED: ubiquitin carboxyl-terminal h	0.998	0.961	0.872	0.0
225436095		1116	PREDICTED: ubiquitin carboxyl-terminal h	0.998	0.963	0.872	0.0
225439303		1117	PREDICTED: ubiquitin carboxyl-terminal h	0.999	0.963	0.854	0.0
356554393		1126	PREDICTED: ubiquitin carboxyl-terminal h	0.998	0.954	0.862	0.0
356574869		1118	PREDICTED: ubiquitin carboxyl-terminal h	0.999	0.962	0.863	0.0
356547873		1118	PREDICTED: ubiquitin carboxyl-terminal h	0.999	0.962	0.863	0.0
164605535		1118	CM0545.290.nc [Lotus japonicus]	0.999	0.962	0.856	0.0
296089314		1116	unnamed protein product [Vitis vinifera]	0.998	0.963	0.851	0.0
357493435		1123	Ubiquitin carboxyl-terminal hydrolase [M	0.997	0.956	0.849	0.0

>gi\|449448842\|ref\|XP_004142174.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like [Cucumis sativus] gi\|449503435\|ref\|XP_004162001.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1992 bits (5160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 985/1119 (88%), Positives = 1046/1119 (93%), Gaps = 43/1119 (3%)

Query: 1    MTIMTPAPIDQQEDEEMLVPHSDLA-DNHQPMEVVAQPETANAVENNQPLDDPPSSRFTW 59
            MT+MTPAP+DQQEDEEMLVPHSDLA +NHQPMEVV Q ET N VEN QP++DPPSSRFTW
Sbjct: 1    MTVMTPAPVDQQEDEEMLVPHSDLAENNHQPMEVVPQSETGNTVEN-QPVEDPPSSRFTW 59

Query: 60   RIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQ 119
            RI+NF+RLN KK YSEIFIVGG+KWR+LIFPKGNNVDHLSMYLDVADS+SLPYGWSRYAQ
Sbjct: 60   RIDNFTRLNIKKLYSEIFIVGGYKWRILIFPKGNNVDHLSMYLDVADSASLPYGWSRYAQ 119

Query: 120  FSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLIVEAEV 179
            FSL VINQIH+KYSVRKDTQHQFNARESDWGFTSFMPL ELYDP RGYLVNDTLIVEAEV
Sbjct: 120  FSLGVINQIHNKYSVRKDTQHQFNARESDWGFTSFMPLSELYDPTRGYLVNDTLIVEAEV 179

Query: 180  IVRRVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPS 239
            +VRRVVDYW+YDSKKETG+VGLKNQGATCYMNSLLQTL+HIPYFRKAVYHMPTTENDMPS
Sbjct: 180  LVRRVVDYWTYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPS 239

Query: 240  GSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKG 299
             SIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKG
Sbjct: 240  ASIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKG 299

Query: 300  TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERL 359
            TVVEGTIQ+LFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERL
Sbjct: 300  TVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERL 359

Query: 360  EGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL 419
            EGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL
Sbjct: 360  EGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL 419

Query: 420  DRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE 479
            DRENGKYLSP+AD++VRNLYTLHSVLVHSGGVHGGHYYAFIRPTLS+QWYKFDDERVTKE
Sbjct: 420  DRENGKYLSPEADKTVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKE 479

Query: 480  DLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIA 539
            D+KRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK+ICNVDE+DIA
Sbjct: 480  DVKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKVICNVDEKDIA 539

Query: 540  EHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFR 599
            EHLRERLKKEQEEKEHKKKEKAEAHLYT+IKVARD+DL+EQIGKDI+FDLVDHDKVRSFR
Sbjct: 540  EHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLVEQIGKDIFFDLVDHDKVRSFR 599

Query: 600  IQKQIPFNLFK-----------------------------------------VGQLREVS 618
            IQKQ+PFNLFK                                         VGQLREVS
Sbjct: 600  IQKQMPFNLFKEEVAKEFGIPIQFQRYWLWAKRQNHTYRPNRPLTPMEEAQSVGQLREVS 659

Query: 619  NKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGK 678
            NKVHNAELKL LEVE GPD RPIAPP+KTK+DILLFFKLY+PEKEELRYVGRLFVK  GK
Sbjct: 660  NKVHNAELKLLLEVEYGPDSRPIAPPDKTKDDILLFFKLYEPEKEELRYVGRLFVKGNGK 719

Query: 679  PMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKST 738
            P E L KLNEMAGYAP+EEI+LYEEIKFEP++MCEPI+K+ TFRASQLEDGDI+CFQKS 
Sbjct: 720  PFEILTKLNEMAGYAPEEEIELYEEIKFEPNIMCEPIDKKFTFRASQLEDGDIVCFQKSP 779

Query: 739  PIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDDVVERVAQQL 798
            P+E   ++RYP+VPSFL+YVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYD+VVER+AQQL
Sbjct: 780  PVENTEQYRYPDVPSFLEYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYDEVVERLAQQL 839

Query: 799  GLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIHYNQTSDVLYYEVLDIPLPELQ 858
            G+DDPSKIRLTSHNCYSQQPKPQPIKYRGV+HLSDML+HYNQTSD+LYYEVLDIPLPELQ
Sbjct: 840  GVDDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQ 899

Query: 859  CLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQPDAELRLLEVFYHKI 918
             LKTLKVAFHHATKDEV +HTIRLPKQSTV DVINDLKTKVELS PDAELRLLEVFYHKI
Sbjct: 900  GLKTLKVAFHHATKDEVVIHTIRLPKQSTVADVINDLKTKVELSHPDAELRLLEVFYHKI 959

Query: 919  YKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGE 978
            YK+FP NEKIENINDQYWTLRAEEIPEEEKNLGP+DRLIHVYHFTK+TAQNQMQIQNFGE
Sbjct: 960  YKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKDTAQNQMQIQNFGE 1019

Query: 979  PFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRD 1038
            PFFLVI+EGETL +IK+RIQ+KLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVS+RFQRRD
Sbjct: 1020 PFFLVINEGETLADIKLRIQKKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSNRFQRRD 1079

Query: 1039 VYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 1077
            VYGAWEQYLGLEH+D+APKRAY ANQNRHT+EKPVKIYN
Sbjct: 1080 VYGAWEQYLGLEHTDNAPKRAYTANQNRHTFEKPVKIYN 1118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356501302\|ref\|XP_003519464.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Glycine max]	Back alignment and taxonomy information

>gi\|225436095\|ref\|XP_002277700.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 [Vitis vinifera] gi\|296084015\|emb\|CBI24403.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225439303\|ref\|XP_002267555.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356554393\|ref\|XP_003545531.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Glycine max]	Back alignment and taxonomy information

>gi\|356574869\|ref\|XP_003555566.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Glycine max]	Back alignment and taxonomy information

>gi\|356547873\|ref\|XP_003542329.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like [Glycine max]	Back alignment and taxonomy information

>gi\|164605535\|dbj\|BAF98601.1\| CM0545.290.nc [Lotus japonicus]	Back alignment and taxonomy information

>gi\|296089314\|emb\|CBI39086.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357493435\|ref\|XP_003617006.1\| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi\|355518341\|gb\|AES99964.1\| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1077
TAIR\|locus:2144118		1116	UBP12 "ubiquitin-specific prot	0.597	0.577	0.774	0.0
TAIR\|locus:2081501		1115	UBP13 "ubiquitin-specific prot	0.597	0.577	0.755	0.0
DICTYBASE\|DDB_G0276443		1306	usp7 "putative ubiquitin carbo	0.418	0.345	0.478	8.8e-155
UNIPROTKB\|F1N556		1086	USP7 "Ubiquitin carboxyl-termi	0.472	0.468	0.418	2.2e-148
UNIPROTKB\|Q93009		1102	USP7 "Ubiquitin carboxyl-termi	0.515	0.503	0.399	2.9e-148
RGD\|1306915		1103	Usp7 "ubiquitin specific pepti	0.486	0.475	0.410	3.6e-148
UNIPROTKB\|Q4VSI4		1103	Usp7 "Ubiquitin carboxyl-termi	0.486	0.475	0.410	3.6e-148
UNIPROTKB\|B7Z815		1086	USP7 "Ubiquitin carboxyl-termi	0.492	0.488	0.409	4.6e-148
UNIPROTKB\|F1PX83		1086	USP7 "Ubiquitin carboxyl-termi	0.492	0.488	0.409	4.6e-148
UNIPROTKB\|F1RKZ6		1103	USP7 "Ubiquitin carboxyl-termi	0.512	0.500	0.397	5.9e-148

TAIR\|locus:2144118 UBP12 "ubiquitin-specific protease 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2654 (939.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 504/651 (77%), Positives = 548/651 (84%)

Query:     1 MTIMTPAPIDQQEDEEMLVPHSDLADNH-QPMEVVAQPETANAVENNQPLDDPPSSRFTW 59
             MT+MTP P+DQ EDEEMLVP+SDL D   QPMEV  QPETA +   NQP +DPP+ +FTW
Sbjct:     1 MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEVT-QPETAASTVENQPAEDPPTLKFTW 59

Query:    60 RIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWSRYAQ 119
              I NFSR NT+KHYS++F+VGG+KWR+LIFPKGNNVDHLSMYLDV+D++SLPYGWSRYAQ
Sbjct:    60 TIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYAQ 119

Query:   120 FSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRGYLVNDTLXXXXXX 179
             FSLAV+NQIH++Y+VRK+TQHQFNARESDWGFTSFMPL ELYDP+RGYLVNDT+      
Sbjct:   120 FSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEV 179

Query:   180 XXXXXXDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPS 239
                   DYWSYDSKKETG+VGLKNQGATCYMNSLLQTL+HIPYFRKAVYHMPTTEND P+
Sbjct:   180 AVRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPT 239

Query:   240 GSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKG 299
              SIPLALQSLFYKLQY+D+SVATKELTKSFGWDTYDSFMQHDVQELNRVL EKLEDKMKG
Sbjct:   240 ASIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKG 299

Query:   300 TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERL 359
             TVVEGTIQQLFEGHHMNYIECINVD+KSTRKESFYDLQLDVKGC+DVYASFDKYVEVERL
Sbjct:   300 TVVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERL 359

Query:   360 EGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL 419
             EGDNKYHAE +GLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL+LDL
Sbjct:   360 EGDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDL 419

Query:   420 DRENGKYLSPDADRSVRNLYTXXXXXXXXXXXXXXXYYAFIRPTLSDQWYKFDDERVTKE 479
             DRE+GKYLSPDADRSVRNLYT               YYAFIRPTLSDQWYKFDDERVTKE
Sbjct:   420 DREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE 479

Query:   480 DLKRALEEQYGGEEELPQTNPGFNNTP-FKFTKYSNAYMLVYIRESDKDKIICNVDEQDI 538
             DLKRALEEQYGGEEELPQTNPGFNN P FKFTKYSNAYMLVYIRESDKDKIICNVDE+DI
Sbjct:   480 DLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDI 539

Query:   539 AXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSF 598
             A                        HLYT+IKVARD+DL EQIGKDIYFDLVDHDKVRSF
Sbjct:   540 AEHLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSF 599

Query:   599 RIQKQIPFNLFKVGQLREVSNKVHNAELKLFLEVERG---PDLRPIAPPEK 646
             RIQKQ PF  FK    +E    V      ++ + +     P+ RP+ P E+
Sbjct:   600 RIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPN-RPLTPQEE 649

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR\|locus:2081501 UBP13 "ubiquitin-specific protease 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276443 usp7 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N556 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93009 USP7 "Ubiquitin carboxyl-terminal hydrolase 7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1306915 Usp7 "ubiquitin specific peptidase 7 (herpes virus-associated)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4VSI4 Usp7 "Ubiquitin carboxyl-terminal hydrolase 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|B7Z815 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PX83 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RKZ6 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VYQ8	UBP7_DROME	3, ., 4, ., 1, 9, ., 1, 2	0.3561	0.9006	0.8591	yes	no
Q6A4J8	UBP7_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.3611	0.9099	0.8884	yes	no
Q6U7I1	UBP7_CHICK	3, ., 4, ., 1, 9, ., 1, 2	0.3566	0.9266	0.9064	yes	no
Q9UTT1	UBP21_SCHPO	3, ., 4, ., 1, 9, ., 1, 2	0.3528	0.9145	0.8724	yes	no
Q9FPT1	UBP12_ARATH	3, ., 4, ., 1, 9, ., 1, 2	0.8116	0.9962	0.9614	yes	no
Q84WU2	UBP13_ARATH	3, ., 4, ., 1, 9, ., 1, 2	0.8041	0.9972	0.9632	no	no
Q93009	UBP7_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.3575	0.9275	0.9065	yes	no
Q4VSI4	UBP7_RAT	3, ., 4, ., 1, 9, ., 1, 2	0.3621	0.9099	0.8884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.998
3rd Layer	3.4.19.12	0.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1077
COG5077		1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	0.0
cd02659		334	cd02659, peptidase_C19C, A subfamily of Peptidase	1e-164
pfam00443		313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	8e-73
cd02257		255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	4e-59
cd02668		324	cd02668, Peptidase_C19L, A subfamily of Peptidase	3e-52
cd02661		304	cd02661, Peptidase_C19E, A subfamily of Peptidase	3e-42
cd00121		126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	4e-39
cd02663		300	cd02663, Peptidase_C19G, A subfamily of Peptidase	8e-36
cd02660		328	cd02660, Peptidase_C19D, A subfamily of Peptidase	2e-34
cd02674		230	cd02674, Peptidase_C19R, A subfamily of peptidase	2e-32
cd02657		305	cd02657, Peptidase_C19A, A subfamily of Peptidase	2e-31
cd02664		327	cd02664, Peptidase_C19H, A subfamily of Peptidase	2e-31
cd03775		134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	8e-30
cd02667		279	cd02667, Peptidase_C19K, A subfamily of Peptidase	2e-28
cd02671		332	cd02671, Peptidase_C19O, A subfamily of Peptidase	3e-23
pfam13423		296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	3e-20
pfam00917		116	pfam00917, MATH, MATH domain	2e-16
cd03772		137	cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui	2e-16
cd02665		228	cd02665, Peptidase_C19I, A subfamily of Peptidase	1e-15
COG5533		415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	2e-15
smart00061		95	smart00061, MATH, meprin and TRAF homology	5e-15
cd02662		240	cd02662, Peptidase_C19F, A subfamily of Peptidase	1e-14
cd02658		311	cd02658, Peptidase_C19B, A subfamily of Peptidase	4e-14
COG5560		823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	9e-14
cd02666		343	cd02666, Peptidase_C19J, A subfamily of Peptidase	8e-10
cd03773		132	cd03773, MATH_TRIM37, Tripartite motif containing	2e-09
pfam12436		35	pfam12436, USP7, Ubiquitin-specific protease 7	3e-08
COG5560		823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	6e-08
cd00270		149	cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept	8e-06
cd03774		139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	8e-05
COG5207		749	COG5207, UBP14, Isopeptidase T [Posttranslational	4e-04

>gnl\|CDD\|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  619 bits (1597), Expect = 0.0
 Identities = 371/1090 (34%), Positives = 555/1090 (50%), Gaps = 111/1090 (10%)

Query: 56   RFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSSLPYGWS 115
             FTW+++ +S L  KK  S  F VGG  W++++FP+GNN  ++S+YL+         G  
Sbjct: 40   SFTWKVKRWSEL-AKKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGK 98

Query: 116  RY---AQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNRG---YLV 169
             Y   AQF+  + N  +        + H+F+   +DWGFT+F+ L +L +P+ G   +L 
Sbjct: 99   YYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLE 158

Query: 170  NDTLIVEAEVIVRR------VVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYF 223
              TL++   V V +         + +Y+SKKETGYVGL+NQGATCYMNSLLQ+LF I  F
Sbjct: 159  EGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKF 218

Query: 224  RKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQ 283
            RK VY +PT ++     S+ LALQ LFY LQ  +  V T ELT+SFGWD+ DSFMQHD+Q
Sbjct: 219  RKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDSDDSFMQHDIQ 277

Query: 284  ELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 343
            E NRVL + LE  M+GTVVE  +  +F G   +YI+C+NV+Y+S R E F+D+QL+VKG 
Sbjct: 278  EFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGM 337

Query: 344  RDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDT 403
            +++  SF +Y++VE L+GDN+Y+AE++GLQDAKKGV+F   PPVL LQLKRFEYDF RD 
Sbjct: 338  KNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDM 397

Query: 404  MVKINDRYEFPLQLDLDRENGKYLSPDADRS--VRNLYTLHSVLVHSGGVHGGHYYAFIR 461
            MVKINDRYEFPL++DL      +L  DAD+S     +Y L+ VLVHSG +H GHYYA ++
Sbjct: 398  MVKINDRYEFPLEIDLL----PFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLK 453

Query: 462  PTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYI 521
            P    +WYKFDD RVT+   K  LEE +GG+   P  +   +++  K  ++ +AYMLVY+
Sbjct: 454  PEKDGRWYKFDDTRVTRATEKEVLEENFGGDH--PYKDKIRDHSGIK--RFMSAYMLVYL 509

Query: 522  RESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQI 581
            R+S  D ++  V   DI  H+ E L +E ++ E + KE  E HLY  +++   D  +   
Sbjct: 510  RKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYTIDSFIHYH 569

Query: 582  GKDIYFDLVDHDK---VRSFRIQKQIPFNLF-----------KVGQLRE-VSNKVHNAEL 626
            G D Y D         +  F I++    +             +   LRE    K HN  +
Sbjct: 570  GFD-YPDFSSELNDSGLAQFVIKRGAKISDLRNNIAEHLNTPQSLYLREWTMIKRHNKTV 628

Query: 627  KLFLEVER---------------GPDLRPIAP--PEK-----------TKE-DILLFFKL 657
            ++     R               G +LR       E            TK+  I +F K 
Sbjct: 629  RVDRPCNRVNITTRELVGMNTRTGEELRSYLERIIEHNQLDSQRKVALTKDGVINIFVKY 688

Query: 658  YDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEK 717
            +D   + +   G L V    K     P + +    + +  + LYEEIK     M + I  
Sbjct: 689  FDYTTQPISGFGGLHVNKFLKISSISPWIED--SISSNLPLTLYEEIK---PGMVDTIGD 743

Query: 718  RCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSL-EKPKEDD 776
              TF  S++  GDIICF+    +E      Y       D++  R +V FR   ++ +E+ 
Sbjct: 744  NITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAFRRFSDEYRENV 803

Query: 777  FCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPK---PQPIKYRGVDHLSD 833
            F   +     YDD+   V+ +L +  P  +R T       + +        +   + LS 
Sbjct: 804  FEFLLFIGDFYDDLCRNVSCKLHV-TPFYLRGTKSTELEDRIRRVVGSKSIFLLKEALSS 862

Query: 834  MLIHYNQTSDVLYYEVLDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVIN 893
                  + + V +YEVLD+PL EL+  + +++ F       V +    + K  T  D ++
Sbjct: 863  SSEF--RQAPVDFYEVLDVPLSELERKRLIRLCFLSNGYQHVYLAEFYVEKDYTAVDHLH 920

Query: 894  DLKTKVELSQPDAE-LRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNLGP 952
             + TKV  +    + + + EV   +  +   L   I + N    TL  E  P E++ L  
Sbjct: 921  IVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLIIDDN-VRSTLYGEVFPLEQEQLTT 979

Query: 953  HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWK 1012
            ++  + V HF K+  +        G PF  VI   ET  + KVR+  +     + F+K K
Sbjct: 980  NEMCVVVQHFFKDLIRTH------GIPFMFVIVPFETFLDTKVRLVARFGYKYKLFSKIK 1033

Query: 1013 FAFL-------SLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQN 1065
                             Y  D DI+    +R D       Y+ L+H D          ++
Sbjct: 1034 LFVGKSYTDGELDWPMSYFNDEDILYDLIERLD-------YILLDHPD--------RLRS 1078

Query: 1066 RHTYEKPVKI 1075
              +Y++ + +
Sbjct: 1079 HSSYDRAIIM 1088

Length = 1089

>gnl\|CDD\|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>gnl\|CDD\|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases	Back alignment and domain information

>gnl\|CDD\|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins	Back alignment and domain information

>gnl\|CDD\|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19	Back alignment and domain information

>gnl\|CDD\|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast	Back alignment and domain information

>gnl\|CDD\|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>gnl\|CDD\|216189 pfam00917, MATH, MATH domain	Back alignment and domain information

>gnl\|CDD\|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway	Back alignment and domain information

>gnl\|CDD\|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|214496 smart00061, MATH, meprin and TRAF homology	Back alignment and domain information

>gnl\|CDD\|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins	Back alignment and domain information

>gnl\|CDD\|204918 pfam12436, USP7, Ubiquitin-specific protease 7	Back alignment and domain information

>gnl\|CDD\|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Back alignment and domain information

>gnl\|CDD\|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP	Back alignment and domain information

>gnl\|CDD\|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1077
COG5077		1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	100.0
KOG1863		1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02659		334	peptidase_C19C A subfamily of Peptidase C19. Pepti	100.0
cd02668		324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	100.0
cd02663		300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	100.0
cd02664		327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	100.0
KOG1865		545	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02671		332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	100.0
cd02657		305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	100.0
cd02660		328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	100.0
PF14533		213	USP7_C2: Ubiquitin-specific protease C-terminal; P	100.0
KOG4598		1203	consensus Putative ubiquitin-specific protease [Po	100.0
cd02667		279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	100.0
cd02661		304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	100.0
KOG1866		944	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02658		311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	100.0
cd02669		440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	100.0
PF12436		249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	100.0
cd02662		240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	100.0
cd02666		343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	100.0
cd02665		228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	100.0
COG5533		415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	100.0
COG5560		823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	100.0
cd02674		230	Peptidase_C19R A subfamily of peptidase C19. Pepti	100.0
PF00443		269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	100.0
KOG1868		653	consensus Ubiquitin C-terminal hydrolase [Posttran	100.0
cd02673		245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	100.0
KOG0944		763	consensus Ubiquitin-specific protease UBP14 [Postt	100.0
cd02257		255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	100.0
KOG1867		492	consensus Ubiquitin-specific protease [Posttransla	100.0
cd02672		268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	100.0
KOG1873		877	consensus Ubiquitin-specific protease [Posttransla	100.0
COG5207		749	UBP14 Isopeptidase T [Posttranslational modificati	100.0
KOG1870		842	consensus Ubiquitin C-terminal hydrolase [Posttran	99.97
cd02670		241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.97
PF13423		295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.97
KOG1864		587	consensus Ubiquitin-specific protease [Posttransla	99.97
KOG1871		420	consensus Ubiquitin-specific protease [Posttransla	99.93
KOG1872		473	consensus Ubiquitin-specific protease [Posttransla	99.91
cd03772		137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.89
cd03775		134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.89
KOG2026		442	consensus Spindle pole body protein - Sad1p [Cytos	99.84
cd03774		139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.81
cd03773		132	MATH_TRIM37 Tripartite motif containing protein 37	99.8
cd00270		149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.75
cd03776		147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.72
cd03779		147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.71
cd03780		148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.7
cd03781		154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.7
cd00121		126	MATH MATH (meprin and TRAF-C homology) domain; an	99.7
cd03777		186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.7
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.67
PF00917		119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.64
cd03771		167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.63
cd03778		164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.63
smart00061		95	MATH meprin and TRAF homology.	99.54
cd03783		167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.28
cd03782		167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.21
PF15499		275	Peptidase_C98: Ubiquitin-specific peptidase-like,	98.4
KOG1987		297	consensus Speckle-type POZ protein SPOP and relate	98.02
KOG1864		587	consensus Ubiquitin-specific protease [Posttransla	96.32
PF12436		249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	94.19
PF14533		213	USP7_C2: Ubiquitin-specific protease C-terminal; P	93.85
PF08715		320	Viral_protease: Papain like viral protease; InterP	93.42
KOG1887		806	consensus Ubiquitin carboxyl-terminal hydrolase [P	90.87
KOG3556		724	consensus Familial cylindromatosis protein [Genera	88.76
COG5560		823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	88.28
PF05408		193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	88.13
KOG1870		842	consensus Ubiquitin C-terminal hydrolase [Posttran	87.54
PF11976		72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	86.62
cd01763		87	Sumo Small ubiquitin-related modifier (SUMO). Smal	86.52
cd01768		87	RA RA (Ras-associating) ubiquitin domain. The RA (	86.46
smart00314		90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	84.85
KOG0297		391	consensus TNF receptor-associated factor [Signal t	84.62
cd06406		80	PB1_P67 A PB1 domain is present in p67 proteins wh	83.35
PF11543		80	UN_NPL4: Nuclear pore localisation protein NPL4; I	82.37

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=4.2e-181  Score=1529.61  Aligned_cols=996  Identities=36%  Similarity=0.602  Sum_probs=889.6

Q ss_pred             chhhhcccC--CCCCCCCCCcEEEEEEccccccCCCeeecCcEEECCeeEEEEEEeCCCCCCceEEEEEecCCCC---CC
Q 037461           37 PETANAVEN--NQPLDDPPSSRFTWRIENFSRLNTKKHYSEIFIVGGFKWRVLIFPKGNNVDHLSMYLDVADSSS---LP  111 (1077)
Q Consensus        37 ~~~~~~~~~--~~~~~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vGG~~WrIll~P~Gn~~~~lSiyL~~~~~~~---~~  111 (1077)
                      ++++...++  +|+.++..+..|+|+|++||.+. ++..||+|.+||+.|+|.+||+|+++..+|+||+....+.   ..
T Consensus        19 d~~I~~~L~~~~pd~Ee~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~g   97 (1089)
T COG5077          19 DKSIGSILPQFDPDVEELLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGG   97 (1089)
T ss_pred             chhHHHhhhhcCccHHHHhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcC
Confidence            566666555  78889999999999999999994 6899999999999999999999998877999999875431   12


Q ss_pred             CCceEEEEEEEEEEeecCCcceeeecceeecCCCCCCCcccccccccccCCCCC---CcccccceeeeEEEEEEeecc--
Q 037461          112 YGWSRYAQFSLAVINQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPNR---GYLVNDTLIVEAEVIVRRVVD--  186 (1077)
Q Consensus       112 ~~W~~~a~f~l~Lln~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~---gfl~nD~l~Ie~~V~V~~~~~--  186 (1077)
                      ..|.|||||+|.|.|+..|+....++++|+|+....||||++|+.++.|..|+.   +|++++++.|+|+|||++++.  
T Consensus        98 k~~~ccaqFaf~Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGV  177 (1089)
T COG5077          98 KYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGV  177 (1089)
T ss_pred             cchhhhhheeeecCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccc
Confidence            359999999999999999998888999999999999999999999999987653   689999999999999999965  


Q ss_pred             cc----ccCCccccceeecccCCcccchhhhhHHHhhhHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccc
Q 037461          187 YW----SYDSKKETGYVGLKNQGATCYMNSLLQTLFHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVAT  262 (1077)
Q Consensus       187 ~~----~~dsk~~~g~vGL~N~GnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~  262 (1077)
                      +|    +|+||+.||||||+|+|+||||||+||+||.+..||+.+|.+|+ ++..+.++++++||++|++||.++.++++
T Consensus       178 LWHsF~nYnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~~~PvdT  256 (1089)
T COG5077         178 LWHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDT  256 (1089)
T ss_pred             eeecccccccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhccCCCcch
Confidence            34    99999999999999999999999999999999999999999998 56667789999999999999999999999


Q ss_pred             hhhhhhccCCcccccccccHHHHHHHHHHHHHHHhcCCccccccccccceEEeeEEEeeeeeeecceeeeeeeeeeeecC
Q 037461          263 KELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG  342 (1077)
Q Consensus       263 ~~l~~s~~~~~~~~~~QqDa~Efl~~Lld~Le~e~~~~~~~~~i~~lF~G~~~~~i~C~~C~~~s~~~E~f~~L~L~v~~  342 (1077)
                      .+|+++|||.+.++++|||+|||.++|+|.||..|+++..++.++.+|.|+|++++.|.+..++|.+.|.||+++|++++
T Consensus       257 teltrsfgWds~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~  336 (1089)
T COG5077         257 TELTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG  336 (1089)
T ss_pred             HHhhhhcCcccchHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhccceEEecCCCcccccccCeeeceeeEEeccCCCeEEEEEeeEEEecccCeeeeccceEeeCcccccccc
Q 037461          343 CRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRE  422 (1077)
Q Consensus       343 ~~sL~esL~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vLiI~LkRF~~d~~~~~~~Ki~~~v~FP~~LdL~~~  422 (1077)
                      .++|++||++|++.|+|+|+|+|.|+++|.|+|+|++.|.+|||||+||||||+||..++.++|||++++||++|||   
T Consensus       337 ~knLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl---  413 (1089)
T COG5077         337 MKNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL---  413 (1089)
T ss_pred             hhhHHHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             cCCCCCCCcCcCCC--ccEEEEEEEEeeeccCCceEEEEEEeCCCCCEEEEeCceeeEecHHHHHHHhcCCCCCCCCCCC
Q 037461          423 NGKYLSPDADRSVR--NLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNP  500 (1077)
Q Consensus       423 ~~~yl~~~~~~~~~--~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~Wy~fnD~~Vt~vs~~evl~~~~Gg~~~~~~~~~  500 (1077)
                       .||+++++++++.  +.|.|+||+||+|+.+.|||||++|+..+|+||+|||++||+++..+|+++||||+....   +
T Consensus       414 -~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~---~  489 (1089)
T COG5077         414 -LPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYK---D  489 (1089)
T ss_pred             -ccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCc---c
Confidence             9999999887766  999999999999999999999999999999999999999999999999999999975321   1


Q ss_pred             CCCCCCccccCCCcEEEEEEEeccCccccccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEEecchhHHhh
Q 037461          501 GFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTVIKVARDDDLLEQ  580 (1077)
Q Consensus       501 ~~~~~~~~~~~~~~AYmLfY~R~~~~~~i~~~v~~~~ip~~l~~~~~~e~~~~e~~~~e~~e~~~~~~~~~~~~~~~~~~  580 (1077)
                      ..+ ...++.|..+||||+|.|++..+.++.||...+||+|+.+++.++..+.|.|.+|++|+|+|..++++|.+.|.+|
T Consensus       490 k~r-~~~~~kRfmsAYmLvYlRks~~ddLlnPV~a~diP~hv~e~l~eei~~~e~r~kei~e~hlYr~vrl~tid~f~~y  568 (1089)
T COG5077         490 KIR-DHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYTIDSFIHY  568 (1089)
T ss_pred             ccc-CCchhhhhhhhheeeeehHhHHHhhhCchhhhhCCHHHHHhhCHHHHHHHHHHHHHHHhhhheeeEEeecchhhhc
Confidence            111 1234778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceecccCCCC------CcEEEEecccccceeeeccchhhhccccCC------------------------------
Q 037461          581 IGKDIYFDLVDHDK------VRSFRIQKQIPFNLFKVGQLREVSNKVHNA------------------------------  624 (1077)
Q Consensus       581 ~~~~~~fdl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  624 (1077)
                      +|    ||..|++.      ...+++++.++++++. ..+.+.++..+..                              
T Consensus       569 hg----FDy~Dfs~~~~d~~l~qf~iKr~akisdl~-~~iae~ln~pqs~~~r~w~m~krhn~tvrvd~P~n~vnit~~e  643 (1089)
T COG5077         569 HG----FDYPDFSSELNDSGLAQFVIKRGAKISDLR-NNIAEHLNTPQSLYLREWTMIKRHNKTVRVDRPCNRVNITTRE  643 (1089)
T ss_pred             cC----cCchhhhhhcccccceeEEeecCCCHHHHH-HHHHHHcCCCceeeeEEEEEEeccccceeecCcchhhhhHHHH
Confidence            99    99988874      5789999999998885 2222222222211                              


Q ss_pred             ----------ceEEEEEeecC-CCCC-CCCCCCCCCCcEEEEEeeeCCCCceEEeeeEEEEecCCCchhhHHHHHHhcCC
Q 037461          625 ----------ELKLFLEVERG-PDLR-PIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGY  692 (1077)
Q Consensus       625 ----------~~~l~~e~~~~-~~~~-~~~~~~~~~~~~~~f~k~~d~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  692 (1077)
                                .+++|||.... .++. ...........+.||+||||+.+|++.|+|++.|.+..+|+++.|.|++  .|
T Consensus       644 ~~~m~tr~ge~l~~yle~~iEhnqL~s~~~~~lt~d~~~~ifvkyfd~~tq~i~gfg~lhvnk~~~issisp~ied--~~  721 (1089)
T COG5077         644 LVGMNTRTGEELRSYLERIIEHNQLDSQRKVALTKDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIED--SI  721 (1089)
T ss_pred             HhhccchhHHHHHHHHHhhhhhhhhhhhhheeecCCcceEEEEEeeccccccccCccchhhhhhcccccccHHHhh--cc
Confidence                      23344442211 1110 0111223456799999999999999999999999999999999999999  99


Q ss_pred             CCCCcEEEEEEeecCCcccccccccccccccccCCCCCEEEEEecCCCCCCCCCCCCCHHHHHHHHhcceEEEEEecCCC
Q 037461          693 APDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKP  772 (1077)
Q Consensus       693 ~~~~~l~lyEEik~~p~~~ie~i~~~~tf~~~el~~GdIi~fQ~~~~~~~~~~~~~~~~~~yy~~L~nr~~v~f~~~~~~  772 (1077)
                      |.+++|.+|||||  |+ |++-|.++.||.++|++.||||||+++...+......|.++..+|+||++||.|.|+.....
T Consensus       722 ssn~plt~yeeik--pg-mvd~i~~n~t~~~sei~tgDIi~Fe~p~a~e~Dts~~ydsa~klydfl~~rVlv~frrfsd~  798 (1089)
T COG5077         722 SSNLPLTLYEEIK--PG-MVDTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAFRRFSDE  798 (1089)
T ss_pred             cCCCCcchhhhhc--cC-ccccccCCcceeecccCcCcEEEEeccCcccccccccchhhhHHHHhhcCcEEEEEEeeccc
Confidence            9999999999997  88 56999999999999999999999998766666666679999999999999999999954322


Q ss_pred             -CCCCeEEEecccCCHHHHHHHHHHHcCCCCCCcEEEeeccccCCCCCCCcccccCccchHHhhhc-cCC-CcceeeEEE
Q 037461          773 -KEDDFCLEMSKLYTYDDVVERVAQQLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLIH-YNQ-TSDVLYYEV  849 (1077)
Q Consensus       773 -~~~~f~~~ls~~~~Y~~~~~~v~~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-~~~~l~Yev  849 (1077)
                       ....|+++|+....|++||..||.++++ +|.+||+++++..+..+. +-++..+.-+|.+.|.. ++. +....+||+
T Consensus       799 ~~~~vfefll~~~~~Yddlcr~vs~~~hv-~p~ylr~~~~~~l~~~~r-~vv~s~s~fll~eal~ss~e~~q~p~~~yev  876 (1089)
T COG5077         799 YRENVFEFLLFIGDFYDDLCRNVSCKLHV-TPFYLRGTKSTELEDRIR-RVVGSKSIFLLKEALSSSSEFRQAPVDFYEV  876 (1089)
T ss_pred             cccceEEEeeecCccHHHHHHHhccccCC-ChhHheeeeccCcccccc-eeeCCchHhHHHHHhcchhhhccCCcceeee
Confidence             2347999999999999999999999997 599999999765544443 45566556799999965 333 345679999


Q ss_pred             eccChhhhcccceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHhhccccCCC-CccEEEEEEeccEEEEecCCcccc
Q 037461          850 LDIPLPELQCLKTLKVAFHHATKDEVSVHTIRLPKQSTVGDVINDLKTKVELSQP-DAELRLLEVFYHKIYKIFPLNEKI  928 (1077)
Q Consensus       850 L~i~l~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lRl~ev~~~ki~~~~~~~~~i  928 (1077)
                      |++||+|||.+|.+++.|+++++.+++.+++++.|++|+.|+|..+..|++++++ ..++|+|++.++|+.+.++..+.+
T Consensus       877 ldvpLseler~r~irl~flsngy~h~~l~ef~v~kdyt~~d~l~~v~~Kvg~tde~kk~vlv~e~~n~r~~r~hsl~tl~  956 (1089)
T COG5077         877 LDVPLSELERKRLIRLCFLSNGYQHVYLAEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLI  956 (1089)
T ss_pred             cCccHHHHhcccceEEEEeecCceEEEEEEEeecccccHHHHHHHHHhhcCCcHhhhhcEEEEEEeecceecccCccceE
Confidence            9999999999999999999999999999999999999999999999999999985 468999999999999999999999


Q ss_pred             cccccccceEEeeecchhhhcCCCCCeEEEEEEeeccCccccccccccCcceEEEeccCCcHHHHHHHHHHHhCCCcccc
Q 037461          929 ENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEF 1008 (1077)
Q Consensus       929 ~~i~~~~~~~~~E~iP~~e~~~~~~~~~i~v~hf~k~~~~~h~~~~~fGiPF~~~i~~~E~~~~~k~ri~~~~~~~~~~f 1008 (1077)
                      .+++. ..++++|.+|.|+.++..+++.|.|.||+|+..|.|      ||||+|+|.++|+|.+||.||++|+|.++|+|
T Consensus       957 ~d~n~-~stlygev~pleq~ql~t~e~~VvVqhffkdl~r~h------gi~f~f~i~p~etf~dtk~rl~arfg~~~k~F 1029 (1089)
T COG5077         957 IDDNV-RSTLYGEVFPLEQEQLTTNEMCVVVQHFFKDLIRTH------GIPFMFVIVPFETFLDTKVRLVARFGYKYKLF 1029 (1089)
T ss_pred             Eeccc-cceeeeEecchhhhccccCCcEEEEeHHHHHHHHhc------CCceEEEeccccccchhHHHHHHHhCCCceee
Confidence            99986 679999999999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             cceEEEEEe---cC----CCcccCCcccccccccccccCCccceeeeeeCCCCCCccccccccCCCCCccceEec
Q 037461         1009 AKWKFAFLS---LG----RPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIY 1076 (1077)
Q Consensus      1009 ~k~k~a~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lgldh~~~~~~~~~~~~~~~~~~~~~i~i~ 1076 (1077)
                      +|+|++++.   .+    ++.|++|++|+++.+.+.+-      .| ||||++.++        .|+++|||.|+
T Consensus      1030 skikl~vg~s~~~g~~~~~~~~fnDedilyd~ie~l~~------il-lDhp~~~~~--------~~~~Drai~mK 1089 (1089)
T COG5077        1030 SKIKLFVGKSYTDGELDWPMSYFNDEDILYDLIERLDY------IL-LDHPDRLRS--------HSSYDRAIIMK 1089 (1089)
T ss_pred             eeEEEEEeecccccccccccccccchhhhhhhhhccCc------ee-ecCcccccC--------ccccccceecC
Confidence            999999994   23    57999999998888765553      45 999999954        25799999885

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02659 peptidase_C19C A subfamily of Peptidase C19	Back alignment and domain information

>cd02668 Peptidase_C19L A subfamily of Peptidase C19	Back alignment and domain information

>cd02663 Peptidase_C19G A subfamily of Peptidase C19	Back alignment and domain information

>cd02664 Peptidase_C19H A subfamily of Peptidase C19	Back alignment and domain information

>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02671 Peptidase_C19O A subfamily of Peptidase C19	Back alignment and domain information

>cd02657 Peptidase_C19A A subfamily of Peptidase C19	Back alignment and domain information

>cd02660 Peptidase_C19D A subfamily of Peptidase C19	Back alignment and domain information

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A	Back alignment and domain information

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02667 Peptidase_C19K A subfamily of Peptidase C19	Back alignment and domain information

>cd02661 Peptidase_C19E A subfamily of Peptidase C19	Back alignment and domain information

>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02658 Peptidase_C19B A subfamily of Peptidase C19	Back alignment and domain information

>cd02669 Peptidase_C19M A subfamily of Peptidase C19	Back alignment and domain information

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length	Back alignment and domain information

>cd02662 Peptidase_C19F A subfamily of Peptidase C19	Back alignment and domain information

>cd02666 Peptidase_C19J A subfamily of Peptidase C19	Back alignment and domain information

>cd02665 Peptidase_C19I A subfamily of Peptidase C19	Back alignment and domain information

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02674 Peptidase_C19R A subfamily of peptidase C19	Back alignment and domain information

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19	Back alignment and domain information

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases	Back alignment and domain information

>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02672 Peptidase_C19P A subfamily of Peptidase C19	Back alignment and domain information

>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02670 Peptidase_C19N A subfamily of Peptidase C19	Back alignment and domain information

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway	Back alignment and domain information

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast	Back alignment and domain information

>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]	Back alignment and domain information

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP	Back alignment and domain information

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins	Back alignment and domain information

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Back alignment and domain information

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2	Back alignment and domain information

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1	Back alignment and domain information

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins	Back alignment and domain information

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []	Back alignment and domain information

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces	Back alignment and domain information

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>smart00061 MATH meprin and TRAF homology	Back alignment and domain information

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides	Back alignment and domain information

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides	Back alignment and domain information

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase	Back alignment and domain information

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length	Back alignment and domain information

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A	Back alignment and domain information

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein	Back alignment and domain information

>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]	Back alignment and domain information

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins	Back alignment and domain information

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)	Back alignment and domain information

>cd01768 RA RA (Ras-associating) ubiquitin domain	Back alignment and domain information

>smart00314 RA Ras association (RalGDS/AF-6) domain	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis	Back alignment and domain information

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway	Back alignment and domain information

Homologous Structure Templates