Citrus Sinensis ID: 037463

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MHVETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIVDDK
ccEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHcccccccccEEEEEEEEccccccHHHEEccccEEEcccEEEEHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEEEcccHHcccccccccccccccccccccccccEEEEEEccHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccHHHHccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
cccEEEEEEcccccccccHHHcccHHccHHHccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHEEEEEEccccccccccccHHHHHccccEEEEEccccccHHHHHHHccEEEEEEEEEEEEEEEEccEEEEEcHHHHHHHHHHHHHcccHHcccccccccccccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHccHHHcccccEEEEEEccccccEEEccccccccccccccccHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHcccc
MHVETVHVRfdhvgedkkwedffpewidedhkwgpptcpdipmptqdyryLDVIVarvpcrgdgdaavesgwvkpdvdrAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKdsynewnySKLRVWQLIEydkiifidsdllvlknidefffypefsaagtnkvlfnsgvmviepslckfedltlksfkvssynggdqgfLNEVFTWWHRLpkrinhlkvfskqddkehqvgdGLYAIHYLglkpwmcykdydcnwdmvsrhkfasdsahKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASlanghwkikpkdprqyhivddk
mhvetvhvrfdhvgedkkwEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAavesgwvkpdvdrAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAEnaslanghwkikpkdprqyhivddk
MHVETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKllllllKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIVDDK
*****VHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKI**************
**VETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQ**************************NGHWKIKPKDPRQ*H*****
MHVETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIVDDK
MHVETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIVDD*
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MHVETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMPTQDYRYLDVIVARVPCRGDGDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIVDDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q9FZ37557 Putative UDP-glucuronate: yes no 0.552 0.341 0.6 2e-83
F4HZC3566 Putative UDP-glucuronate: no no 0.622 0.378 0.615 9e-80
Q9LSB1659 UDP-glucuronate:xylan alp no no 0.639 0.333 0.552 8e-68
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.627 0.362 0.504 4e-64
Q8W4A7618 Putative UDP-glucuronate: no no 0.633 0.352 0.517 6e-63
O15488 501 Glycogenin-2 OS=Homo sapi yes no 0.447 0.307 0.361 1e-15
Q8GWB7 537 Putative glucuronosyltran no no 0.25 0.160 0.430 1e-14
P46976350 Glycogenin-1 OS=Homo sapi no no 0.491 0.482 0.310 2e-13
O08730333 Glycogenin-1 OS=Rattus no yes no 0.363 0.375 0.364 5e-13
P13280333 Glycogenin-1 OS=Oryctolag yes no 0.491 0.507 0.304 6e-13
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function desciption
 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 132/220 (60%), Positives = 178/220 (80%)

Query: 122 LKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNS 181
             QKDSYNEWNYSKLRVWQ+ +YDK++FID+D ++LK +D  F+YP+ SA+G +KVLFNS
Sbjct: 336 FSQKDSYNEWNYSKLRVWQVTDYDKLVFIDADFIILKKLDHLFYYPQLSASGNDKVLFNS 395

Query: 182 GVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKE 241
           G+MV+EPS C F+DL  KSFK+ SYNGGDQGFLNE+F WWHRL KR+N +K F +++ + 
Sbjct: 396 GIMVLEPSACMFKDLMEKSFKIESYNGGDQGFLNEIFVWWHRLSKRVNTMKYFDEKNHRR 455

Query: 242 HQVGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYC 301
           H + + +  +HYLGLKPW+CY+DYDCNWD+  R  FASDS H+KWW+VYD M ++L+ YC
Sbjct: 456 HDLPENVEGLHYLGLKPWVCYRDYDCNWDISERRVFASDSVHEKWWKVYDKMSEQLKGYC 515

Query: 302 ALTKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIV 341
            L K M+KRI+KWRRIA+N SL + HW+I+ +DPR+ +++
Sbjct: 516 GLNKNMEKRIEKWRRIAKNNSLPDRHWEIEVRDPRKTNLL 555
May be involved in the substitutions of the xylan backbone in stem glucuronoxylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function description
>sp|O15488|GLYG2_HUMAN Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2 Back     alignment and function description
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description
>sp|O08730|GLYG_RAT Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=4 Back     alignment and function description
>sp|P13280|GLYG_RABIT Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
255542624 452 glycogenin, putative [Ricinus communis] 0.982 0.747 0.574 1e-118
224125270425 predicted protein [Populus trichocarpa] 0.578 0.468 0.726 2e-94
224131048430 predicted protein [Populus trichocarpa] 0.575 0.460 0.712 2e-94
150036251 614 glycosyl transferase [Cucumis melo subsp 0.642 0.359 0.668 3e-87
449443179 607 PREDICTED: putative UDP-glucuronate:xyla 0.645 0.365 0.647 7e-85
356571119 539 PREDICTED: uncharacterized protein LOC10 0.616 0.393 0.637 4e-84
147866346 546 hypothetical protein VITISV_042631 [Viti 0.630 0.397 0.639 2e-83
225450971 546 PREDICTED: uncharacterized protein LOC10 0.630 0.397 0.634 3e-83
297848078 560 hypothetical protein ARALYDRAFT_337776 [ 0.552 0.339 0.618 1e-82
357441659 559 Glycogenin-1 [Medicago truncatula] gi|35 0.648 0.398 0.647 4e-82
>gi|255542624|ref|XP_002512375.1| glycogenin, putative [Ricinus communis] gi|223548336|gb|EEF49827.1| glycogenin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/371 (57%), Positives = 259/371 (69%), Gaps = 33/371 (8%)

Query: 3   VETVHVRFDHVGEDKKWEDFFPEWIDEDHKWGPPTCPDIPMP-TQDYRYLDVIVARVPCR 61
           VETVHV F+ + ED+KWEDFFPEWIDED KWGPP CP+IPMP  ++YR LDV+VAR PC 
Sbjct: 82  VETVHVDFEPIPEDRKWEDFFPEWIDEDEKWGPPRCPEIPMPRLKNYRGLDVVVARAPCV 141

Query: 62  GDGDA-------------------AVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLV 102
           G G                      V +GWVKPD+DR VYVVF+GSCG M E+FRC+DL+
Sbjct: 142 GTGGGRKGIRDIRRMQVNLVVANLVVANGWVKPDIDRTVYVVFMGSCGPMQEIFRCEDLL 201

Query: 103 EHAGDYRVY-------WVHAKLLLLLLKQKDSYNE-----WNYSKLRVWQLIEYDKIIFI 150
            H GDY VY            + +   +    Y +     W +  L+   L +   +IFI
Sbjct: 202 SHIGDYWVYKPDLKKLKQKLLMPVGSCQIAPPYAQTGDEIWRHYLLKPMSLNQ-TXVIFI 260

Query: 151 DSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGD 210
           D+D++VLKNID+FF +P+ SA+G +K  FNSG+MVIEPS C F+DL  K+ K++SYNGGD
Sbjct: 261 DADIVVLKNIDQFFTFPQLSASGNDKSFFNSGIMVIEPSECTFQDLMSKTPKLTSYNGGD 320

Query: 211 QGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWMCYKDYDCNWD 270
           QGFLNE FTWWHRLP R+N+LKVF    ++ H V D LYAIH LGLKPWMCYKDYDCNWD
Sbjct: 321 QGFLNEAFTWWHRLPARLNYLKVFRGPRNENHPVPDNLYAIHMLGLKPWMCYKDYDCNWD 380

Query: 271 MVSRHKFASDSAHKKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGHWKI 330
           M  RH FASDSAH++WWQVY+AMPKKLQ+YC LTK MD RI+KWR IA    L +GHWKI
Sbjct: 381 MKDRHIFASDSAHRRWWQVYEAMPKKLQKYCGLTKQMDARIRKWRGIANKLGLPDGHWKI 440

Query: 331 KPKDPRQYHIV 341
             +DPRQ+H V
Sbjct: 441 NARDPRQHHFV 451

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125270|ref|XP_002319544.1| predicted protein [Populus trichocarpa] gi|222857920|gb|EEE95467.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224131048|ref|XP_002328440.1| predicted protein [Populus trichocarpa] gi|222838155|gb|EEE76520.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|150036251|gb|ABR67414.1| glycosyl transferase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449443179|ref|XP_004139358.1| PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like [Cucumis sativus] gi|449483044|ref|XP_004156478.1| PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571119|ref|XP_003553728.1| PREDICTED: uncharacterized protein LOC100809680 [Glycine max] Back     alignment and taxonomy information
>gi|147866346|emb|CAN81983.1| hypothetical protein VITISV_042631 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450971|ref|XP_002280832.1| PREDICTED: uncharacterized protein LOC100247620 [Vitis vinifera] gi|296088322|emb|CBI36767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297848078|ref|XP_002891920.1| hypothetical protein ARALYDRAFT_337776 [Arabidopsis lyrata subsp. lyrata] gi|297337762|gb|EFH68179.1| hypothetical protein ARALYDRAFT_337776 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357441659|ref|XP_003591107.1| Glycogenin-1 [Medicago truncatula] gi|355480155|gb|AES61358.1| Glycogenin-1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2011045557 PGSIP4 "AT1G54940" [Arabidopsi 0.633 0.391 0.605 1.6e-100
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.622 0.378 0.615 1.8e-93
TAIR|locus:2094014659 PGSIP1 "plant glycogenin-like 0.639 0.333 0.556 1.9e-83
TAIR|locus:2196020618 PGSIP2 "plant glycogenin-like 0.613 0.341 0.533 7.6e-74
UNIPROTKB|E1BYL9332 E1BYL9 "Uncharacterized protei 0.569 0.590 0.327 5.9e-20
WB|WBGene00012020300 gyg-2 [Caenorhabditis elegans 0.369 0.423 0.364 9e-17
UNIPROTKB|O15488 501 GYG2 "Glycogenin-2" [Homo sapi 0.450 0.309 0.372 4.9e-16
UNIPROTKB|C9JQ42266 GYG1 "Glycogenin-1" [Homo sapi 0.462 0.597 0.326 3.5e-15
UNIPROTKB|F1SKC4331 GYG1 "Uncharacterized protein" 0.473 0.492 0.326 5.5e-15
WB|WBGene00006863 429 gyg-1 [Caenorhabditis elegans 0.369 0.296 0.379 7e-15
TAIR|locus:2011045 PGSIP4 "AT1G54940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 822 (294.4 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
 Identities = 132/218 (60%), Positives = 178/218 (81%)

Query:   124 QKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNKVLFNSGV 183
             QKDSYNEWNYSKLRVWQ+ +YDK++FID+D ++LK +D  F+YP+ SA+G +KVLFNSG+
Sbjct:   338 QKDSYNEWNYSKLRVWQVTDYDKLVFIDADFIILKKLDHLFYYPQLSASGNDKVLFNSGI 397

Query:   184 MVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQ 243
             MV+EPS C F+DL  KSFK+ SYNGGDQGFLNE+F WWHRL KR+N +K F +++ + H 
Sbjct:   398 MVLEPSACMFKDLMEKSFKIESYNGGDQGFLNEIFVWWHRLSKRVNTMKYFDEKNHRRHD 457

Query:   244 VGDGLYAIHYLGLKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMPKKLQQYCAL 303
             + + +  +HYLGLKPW+CY+DYDCNWD+  R  FASDS H+KWW+VYD M ++L+ YC L
Sbjct:   458 LPENVEGLHYLGLKPWVCYRDYDCNWDISERRVFASDSVHEKWWKVYDKMSEQLKGYCGL 517

Query:   304 TKYMDKRIKKWRRIAENASLANGHWKIKPKDPRQYHIV 341
              K M+KRI+KWRRIA+N SL + HW+I+ +DPR+ +++
Sbjct:   518 NKNMEKRIEKWRRIAKNNSLPDRHWEIEVRDPRKTNLL 555
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005982 "starch metabolic process" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0015020 "glucuronosyltransferase activity" evidence=IDA
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYL9 E1BYL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O15488 GYG2 "Glycogenin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JQ42 GYG1 "Glycogenin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKC4 GYG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00006863 gyg-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 3e-50
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-25
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 4e-12
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 2e-11
PLN00176333 PLN00176, PLN00176, galactinol synthase 2e-11
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 3e-08
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 1e-07
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 2e-05
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  167 bits (425), Expect = 3e-50
 Identities = 68/177 (38%), Positives = 94/177 (53%), Gaps = 13/177 (7%)

Query: 124 QKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFF-FYPEFSAAGTNK--VLFN 180
            K    +  Y+KLR+W L EYDK++F+D+D LVL+NIDE F    EF+AA       LFN
Sbjct: 70  LKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFN 129

Query: 181 SGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTW---WHRLPKRINHLKVFSKQ 237
           SGV V++PS   F DL        S++GGDQG LN  F+    W RLP   N LK     
Sbjct: 130 SGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWKRLPFTYNALKPLRYL 189

Query: 238 DDKEHQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKKWWQVYDAM 293
             +    GD +  +H++G  KPW  ++D +         K   +  H+ WW +YD +
Sbjct: 190 HPEALWFGDEIKVVHFIGGDKPWSWWRDPETKE------KDDYNELHQWWWDIYDEL 240

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.97
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.97
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.96
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.96
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.96
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.96
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.95
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.93
PLN02867535 Probable galacturonosyltransferase 99.91
PLN02659534 Probable galacturonosyltransferase 99.89
PLN02769629 Probable galacturonosyltransferase 99.89
PLN02870533 Probable galacturonosyltransferase 99.89
PLN02829639 Probable galacturonosyltransferase 99.89
PLN02523559 galacturonosyltransferase 99.88
PLN02718603 Probable galacturonosyltransferase 99.88
PLN02742534 Probable galacturonosyltransferase 99.87
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.87
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.86
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.86
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 99.75
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.53
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.58
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 96.81
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 95.1
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 94.62
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 93.61
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 93.0
PLN03181453 glycosyltransferase; Provisional 80.47
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-36  Score=296.71  Aligned_cols=216  Identities=28%  Similarity=0.425  Sum_probs=162.7

Q ss_pred             cchhhhcCccCCCCcccEEEEEEcCCcchhhhhhhhHHhhhcCCEEEEEechhhHHHhhhcc---CCCcchhhhHhhhcc
Q 037463           64 GDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYWVHAKLLLLLLKQK---DSYNEWNYSKLRVWQ  140 (344)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~~s~c~p~~~~~~~~~l~~~~~~~~~y~~~~~dl~~l~~~~---~~ys~~ty~KL~i~~  140 (344)
                      |.+++++|++..++.+++ |++++...|..-...+    +..|... ..+  ..+.....+.   ..+...+|+||++|+
T Consensus        38 Ga~vL~~SLr~~~s~~~l-VvlVt~dVp~e~r~~L----~~~g~~V-~~V--~~i~~~~~~~~~~~~~~~i~~tKl~iw~  109 (333)
T PLN00176         38 GVVGLAKGLRKVKSAYPL-VVAVLPDVPEEHRRIL----VSQGCIV-REI--EPVYPPENQTQFAMAYYVINYSKLRIWE  109 (333)
T ss_pred             HHHHHHHHHHHhCCCCCE-EEEECCCCCHHHHHHH----HHcCCEE-EEe--cccCCcccccccccchhhhhhhhhhhcc
Confidence            889999999998888886 8888888876543333    3334322 111  0010011111   122345899999999


Q ss_pred             cCCcCEEEEEeCCccccCCchhhhcCCc--ccccCC----------------------------------CCCcccceEE
Q 037463          141 LIEYDKIIFIDSDLLVLKNIDEFFFYPE--FSAAGT----------------------------------NKVLFNSGVM  184 (344)
Q Consensus       141 L~~ydKVLYLDaD~LVl~dIdeLF~l~~--iaAvpd----------------------------------~~~yFNSGVm  184 (344)
                      +++|+||||||||+||++|||+||+++.  ++|+.+                                  ...|||||||
T Consensus       110 l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~~~~~yFNSGVl  189 (333)
T PLN00176        110 FVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLYFNAGMF  189 (333)
T ss_pred             ccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccCCCCCeEEeEEE
Confidence            9999999999999999999999999963  555432                                  1249999999


Q ss_pred             EEeCChhhHHHHHHHHhhCCCCCCCChHHHHHHhh-cccccCcccccccccccCCchhhhcCCCcEEEEecC--CCCCCC
Q 037463          185 VIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFT-WWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLG--LKPWMC  261 (344)
Q Consensus       185 Linps~~~~~~l~~~~~~~~~~~~~DQdiLN~~f~-~~~~Lp~~yN~~~~~~~~~~~~~~~~~~~~IIHf~g--~KPW~~  261 (344)
                      ||||+.+++++|++.+.....+.++|||+||.+|. +|..||.+||++......+++..+ .++++||||+|  .|||+.
T Consensus       190 vinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~~~~~~-~~~vkIIHY~~~~~KPW~~  268 (333)
T PLN00176        190 VFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHPENVE-LDKVKVVHYCAAGSKPWRY  268 (333)
T ss_pred             EEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhChhhcc-cCCcEEEEeeCCCCCCCCC
Confidence            99999999999999987666678899999999999 999999999999866555555444 57899999996  699985


Q ss_pred             CCCCCCCcccccccccCCchHHHHHHHHHhhhH
Q 037463          262 YKDYDCNWDMVSRHKFASDSAHKKWWQVYDAMP  294 (344)
Q Consensus       262 ~~~y~~nw~~~~~~~~~~d~~~~~WW~~~~~~p  294 (344)
                       +...+||+.++..     ..+++||++|++..
T Consensus       269 -~~~~~~~~~~~~~-----~~~~~Ww~~~~~~~  295 (333)
T PLN00176        269 -TGKEENMDREDIK-----MLVKKWWDIYNDES  295 (333)
T ss_pred             -CCcccCCChHHHH-----HHHHHHHHHhcccc
Confidence             3556787765433     45899999999764

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 1e-14
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 2e-14
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 2e-14
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 3e-14
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 4e-14
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 4e-14
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 4e-14
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 5e-14
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 5e-14
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 6e-14
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 1e-13
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 1e-13
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 1e-13
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 2e-13
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 134 SKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNK--VLFNSGVMVIEPSLC 191
           +KL  W L +Y K +F+D+D LVL NID+ F   E SAA        FNSGV V +PS+ 
Sbjct: 105 TKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVE 164
Query: 192 KFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLPKR--------INHLKVFSKQDDKEHQ 243
            +  L   + +  S+NGGDQG LN  F  W     R        ++ + ++S     +  
Sbjct: 165 TYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFK-A 223
Query: 244 VGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFASDSAHKK----WWQVYDAMPKKLQ 298
            G     +H+LG  KPW     YD     V          H +    WW ++      L 
Sbjct: 224 FGANAKVVHFLGQTKPW--NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLL 281
Query: 299 QYCALTK 305
           Q   L +
Sbjct: 282 QQFGLVQ 288
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 2e-31
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 9e-31
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 4e-12
3tzt_A276 Glycosyl transferase family 8; structural genomics 1e-09
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  119 bits (299), Expect = 2e-31
 Identities = 62/233 (26%), Positives = 87/233 (37%), Gaps = 16/233 (6%)

Query: 109 RVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYPE 168
            V  + +     L   K        +KL  W L +Y K +F+D+D LVL NID+ F   E
Sbjct: 60  TVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE 119

Query: 169 FSAAGTNKV--LFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTWWHRLP- 225
            SAA        FNSGV V +PS+  +  L   + +  S++GGDQG LN  F  W     
Sbjct: 120 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDI 179

Query: 226 -KRINHLKVFSKQDDKEH-----QVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKFA 278
            K +  +   S      +       G     +H+LG  KPW     YD     V      
Sbjct: 180 RKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNY--TYDTKTKSVRSEGHD 237

Query: 279 SDSAH----KKWWQVYDAMPKKLQQYCALTKYMDKRIKKWRRIAENASLANGH 327
               H      WW ++      L Q   L +               + L+ G 
Sbjct: 238 PTMTHPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGE 290
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.98
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.97
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.96
2p6w_A213 VP54, putative glycosyltransferase (mannosyltransf 81.12
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=4.7e-34  Score=269.66  Aligned_cols=224  Identities=26%  Similarity=0.352  Sum_probs=159.5

Q ss_pred             cchhhhcCccCCCCcccEEEEEEcCCcchhhhhhhhHHhhhcCCEEEE--EechhhHHHhhhccCCCcchhhhHhhhccc
Q 037463           64 GDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVY--WVHAKLLLLLLKQKDSYNEWNYSKLRVWQL  141 (344)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~~s~c~p~~~~~~~~~l~~~~~~~~~y--~~~~~dl~~l~~~~~~ys~~ty~KL~i~~L  141 (344)
                      +.+++..|++.++...++ |+++|...|......++++    +...+-  .+...+-.-+...++..-..+|+||++|++
T Consensus        19 ga~vL~~SL~~~~s~~~l-vvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l   93 (263)
T 3u2u_A           19 GALVLGSSLKQHRTTRRL-VVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSL   93 (263)
T ss_dssp             HHHHHHHHHHHTTCCSEE-EEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGC
T ss_pred             HHHHHHHHHHHhCCCCCE-EEEecCCCCHHHHHHHHHc----CCeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhccc
Confidence            778888899888777777 5578887776555444433    332211  111111111111111122468999999999


Q ss_pred             CCcCEEEEEeCCccccCCchhhhcCCcccccCCCC--CcccceEEEEeCChhhHHHHHHHHhhCCCCCCCChHHHHHHhh
Q 037463          142 IEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTNK--VLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFT  219 (344)
Q Consensus       142 ~~ydKVLYLDaD~LVl~dIdeLF~l~~iaAvpd~~--~yFNSGVmLinps~~~~~~l~~~~~~~~~~~~~DQdiLN~~f~  219 (344)
                      ++||||||||||++|++||++||+++.++|+|+.+  .|||||||||||+...++++++.+.+..++.++|||+||.+|.
T Consensus        94 ~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~  173 (263)
T 3u2u_A           94 TQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFS  173 (263)
T ss_dssp             TTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTT
T ss_pred             cCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhc
Confidence            99999999999999999999999999999999864  7999999999999999999999988777889999999999997


Q ss_pred             c------ccccCcccccccccccC-CchhhhcCCCcEEEEecC-CCCCCCCCCCCCCccccc-cccc-CCchHHHHHHHH
Q 037463          220 W------WHRLPKRINHLKVFSKQ-DDKEHQVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVS-RHKF-ASDSAHKKWWQV  289 (344)
Q Consensus       220 ~------~~~Lp~~yN~~~~~~~~-~~~~~~~~~~~~IIHf~g-~KPW~~~~~y~~nw~~~~-~~~~-~~d~~~~~WW~~  289 (344)
                      .      +..||.+||++...... .+.+.+..++++||||+| .|||....+....--... ..+. .-..+-++||.+
T Consensus       174 ~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~  253 (263)
T 3u2u_A          174 SWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNI  253 (263)
T ss_dssp             TTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHH
T ss_pred             cccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHH
Confidence            4      47999999998753222 223334467899999999 799997421100000000 0011 015788999999


Q ss_pred             Hhh
Q 037463          290 YDA  292 (344)
Q Consensus       290 ~~~  292 (344)
                      |.+
T Consensus       254 ~~~  256 (263)
T 3u2u_A          254 FTT  256 (263)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            985
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 9e-25
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-05
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 99.2 bits (246), Expect = 9e-25
 Identities = 55/198 (27%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 108 YRVYWVHAKLLLLLLKQKDSYNEWNYSKLRVWQLIEYDKIIFIDSDLLVLKNIDEFFFYP 167
             V  + +     L   K        +KL  W L +Y K +F+D+D LVL NID+ F   
Sbjct: 59  ITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE 118

Query: 168 EFSAAGTNK--VLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFTW----- 220
           E SAA        FNSGV V +PS+  +  L   + +  S++GGDQG LN  F       
Sbjct: 119 ELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTD 178

Query: 221 -WHRLPKRINHLKVFSKQDDKEH-QVGDGLYAIHYLG-LKPWMCYKDYDCNWDMVSRHKF 277
               LP   N   +            G     +H+LG  KPW    D          H  
Sbjct: 179 IRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDP 238

Query: 278 AS--DSAHKKWWQVYDAM 293
                     WW ++   
Sbjct: 239 TMTHPQFLNVWWDIFTTS 256
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.97
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.97
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 90.43
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 84.32
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.97  E-value=2.5e-32  Score=251.72  Aligned_cols=225  Identities=26%  Similarity=0.351  Sum_probs=161.1

Q ss_pred             cchhhhcCccCCCCcccEEEEEEcCCcchhhhhhhhHHhhhcCCEEEEE--echhhHHHhhhccCCCcchhhhHhhhccc
Q 037463           64 GDAAVESGWVKPDVDRAVYVVFVGSCGAMVEMFRCDDLVEHAGDYRVYW--VHAKLLLLLLKQKDSYNEWNYSKLRVWQL  141 (344)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~~s~c~p~~~~~~~~~l~~~~~~~~~y~--~~~~dl~~l~~~~~~ys~~ty~KL~i~~L  141 (344)
                      +++|+..|++.++...++ |+++++..+...+..+++.    +...+..  +..++........+.++..+|+||++|++
T Consensus        18 ~a~vl~~SL~~~~~~~~~-vvl~~~~i~~~~~~~L~~~----~~~~~~v~~i~~~~~~~~~~~~~~~~~~ty~Kl~i~~l   92 (263)
T d1ll2a_          18 GALVLGSSLKQHRTSRRL-AVLTTPQVSDTMRKALEIV----FDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL   92 (263)
T ss_dssp             HHHHHHHHHHHTTCCSEE-EEEECTTSCHHHHHHHHHH----CSEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC
T ss_pred             HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHh----CCcceeEEeecCcchhhhhhhccccchhhhHHHHHhhh
Confidence            567778888887777676 6677887777766555443    3333221  11122222223345677789999999999


Q ss_pred             CCcCEEEEEeCCccccCCchhhhcCCcccccCCC--CCcccceEEEEeCChhhHHHHHHHHhhCCCCCCCChHHHHHHhh
Q 037463          142 IEYDKIIFIDSDLLVLKNIDEFFFYPEFSAAGTN--KVLFNSGVMVIEPSLCKFEDLTLKSFKVSSYNGGDQGFLNEVFT  219 (344)
Q Consensus       142 ~~ydKVLYLDaD~LVl~dIdeLF~l~~iaAvpd~--~~yFNSGVmLinps~~~~~~l~~~~~~~~~~~~~DQdiLN~~f~  219 (344)
                      ++||||||||||+||++||++||+.+.++|+++.  ..+|||||||++|+.++++.+.+.+.+...+.++||+++|..|.
T Consensus        93 ~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~  172 (263)
T d1ll2a_          93 TQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFN  172 (263)
T ss_dssp             TTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred             cccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHH
Confidence            9999999999999999999999999999888764  58999999999999999999999988888888999999999986


Q ss_pred             ------cccccCcccccccccccC-CchhhhcCCCcEEEEecC-CCCCCCCCCC--CCCcccccccccCCchHHHHHHHH
Q 037463          220 ------WWHRLPKRINHLKVFSKQ-DDKEHQVGDGLYAIHYLG-LKPWMCYKDY--DCNWDMVSRHKFASDSAHKKWWQV  289 (344)
Q Consensus       220 ------~~~~Lp~~yN~~~~~~~~-~~~~~~~~~~~~IIHf~g-~KPW~~~~~y--~~nw~~~~~~~~~~d~~~~~WW~~  289 (344)
                            .+..||..||+....... .........+++||||+| .|||......  ...+.............+++||++
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ww~~  252 (263)
T d1ll2a_         173 SWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDI  252 (263)
T ss_dssp             TTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHH
T ss_pred             hhhccCcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeCCCCCCCCCCCCCCccccccchhhccccHHHHHHHHHHH
Confidence                  466788888877542211 112233457899999999 6999864221  111110000001124678999999


Q ss_pred             Hhhh
Q 037463          290 YDAM  293 (344)
Q Consensus       290 ~~~~  293 (344)
                      |++.
T Consensus       253 ~~~~  256 (263)
T d1ll2a_         253 FTTS  256 (263)
T ss_dssp             HHHT
T ss_pred             Hhcc
Confidence            9975
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure