Citrus Sinensis ID: 037465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSPD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccEEcHHHHHHHHHHHHcEEEEEEEccccccccccccccEEEEEEEEccccccccccccccccEEEEEccccccccccccccHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHccHHHHHHcccccccccEEEEEEEccccccccHHccccccEEEEEccccccccccccccccccEEEccccccEEEcccccccccccccccccccccccEEccccccccHHHHcccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccEHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEccccccccHHHccccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHcccHccccccccEEEccccccccccHHcccccccEEEEEcccccHHccccHHcccccccEEEEcccccHHcccccccccccccEccEEEccccccccccccHHcHccHHHccEEEEcccccccccHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHHHHccccccccEEEEEccccccccHHHccccccEEEEEccccccccccccccccccEEEEcccccccEccHHHcccccccccccccccccccEEEEcccHHHHHHccccccccccHHccccccccccc
Coil and Loop (DISEMBL)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKeclwleidgnkeSVINFFGgkvrhlglnfeggaplpmsfFEFDRLRSLLIYdeslsnlslngsiLPELFSKLACLRALVIsqsssfshpgpnliteipENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLndntrslkympigiSKLTSLRTLGkfvvgggvdgsstcRLESLKNLQLLRECgieglgnvshldeAERLQLYNQQNLLClhlefgrvvdgedeerRRKKEKDEQLLKalqppvnveELWIVYYGGNIFPKWLTSLTNLRnlylsscfncehlpplgklplekltlynlksvkrvgneflgieesseddpsssssssselsiegcpllenryregkgedwhkishiphiqmspd
Flexible Loop (DISEMBL)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQsssfshpgpnLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNlqkldirwCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVvgggvdgsstcRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFgrvvdgedeerrrkkekdeqllkalqppvnveELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLgieesseddpsssssssselsiegcPLLENRYREGKgedwhkishiphiqmspd
Low Complexity Region (SEG)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDEslsnlslngsilPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERlqlynqqnllclhlEFgrvvdgedeerrrkkekdeQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHlpplgklplekltlYNLKSVKRVGNEFLGieesseddpsssssssselsieGCPLLENRYREGKGEDWHKISHIPHIQMSPD
Disordered region (IsUnstruct)
*****EEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVV********************LQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLG*****************************************************
Disordered Region (DISOPRED)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNK****NFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVD***********KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLGIEES*******SSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSP*
Disordered Region (DISEMBL)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVD**************QLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLGI********************EGCPLLENRYREGKGEDWHKISHIPHIQMSPD
Disordered Region (DISPRO)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQM***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q7XA42	979	Putative disease resistan	N/A	no	0.710	0.313	0.323	6e-33
Q9LRR5	1424	Putative disease resistan	yes	no	0.858	0.260	0.326	1e-32
Q7XA39	988	Putative disease resistan	N/A	no	0.715	0.312	0.321	1e-31
Q7XA40	992	Putative disease resistan	N/A	no	0.740	0.322	0.326	2e-31
Q7XBQ9	970	Disease resistance protei	N/A	no	0.715	0.318	0.313	2e-29
Q9LRR4	1054	Putative disease resistan	no	no	0.828	0.339	0.294	4e-28
Q38834	852	Disease resistance RPP13-	no	no	0.701	0.355	0.286	1e-15
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.298	0.214	0.306	1e-07
Q9C646	899	Probable disease resistan	no	no	0.476	0.229	0.270	6e-07
Q7KRY7	1851	Protein lap4 OS=Drosophil	yes	no	0.398	0.092	0.271	8e-07

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  142 bits (357), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 178/377 (47%), Gaps = 70/377 (18%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDC-----NMHDIVHDFAQFVCRKECLWLEIDGNKESV 55
           +E +G E +N L  RSFFQEIE +       MHD++HD A  +            N  S 
Sbjct: 441 LEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLATSL---------FSANTSS- 490

Query: 56  INFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLAC 115
                  +R +  N++G                   Y  S+    +  S  P L  K   
Sbjct: 491 -----SNIREINANYDG-------------------YMMSIGFAEVVSSYSPSLLQKFVS 526

Query: 116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSG-LCIKRLPETLCELYNLQKL 174
           LR L +  S+         + ++P ++G L+HL+YL+LSG   I+ LP+ LC+L NLQ L
Sbjct: 527 LRVLNLRNSN---------LNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTL 577

Query: 175 DIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGS 234
           D+ +C +L  LP    KL ++R+LL D   SL   P  I  LT L++L  FV+G      
Sbjct: 578 DLHYCDSLSCLPKQTSKLGSLRNLLLDGC-SLTSTPPRIGLLTCLKSLSCFVIG----KR 632

Query: 235 STCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNL--LCLHLEFGRVVDGEDE 292
              +L  LKNL L     I  L  V    +A+   L  + NL  LCL  +    +DG   
Sbjct: 633 KGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWD----LDG--- 685

Query: 293 ERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCEH 350
               K   D ++L+AL+P  N++ L I  +GG   P W+  + L N+ ++ +  C NC  
Sbjct: 686 ----KHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSC 741

Query: 351 LPPLGKLP-LEKLTLYN 366
           LPP G+LP LE L L+ 
Sbjct: 742 LPPFGELPCLESLELHT 758

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 132/404 (32%), Positives = 196/404 (48%), Gaps = 33/404 (8%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDCN---MHDIVHDFAQFVCRKECLWLEIDGNKESVIN 57
           +E IG +Y   L  +SFFQ ++       MHD+++D A+ V    C  LE D   E    
Sbjct: 458 LEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPE---- 513

Query: 58  FFGGKVRHLGLNFEGGAPLPMSFFEF---DRLRSLLIYDE--SLSNLSLNGSILPELFSK 112
                 RH   +        ++F      + LR++L ++   SL +L L   +L  L + 
Sbjct: 514 -IPSTTRHFSFS-RSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNA 571

Query: 113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQ 172
           L+ LR L +S            IT +P+++  L  L+YL+LS   IK LPE +C L NLQ
Sbjct: 572 LSGLRILSLSHYQ---------ITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQ 622

Query: 173 KLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVD 232
            L +  CR+L  LP  I +L+N+R LL+     L  MP GI KL SL+ L  FV+G    
Sbjct: 623 TLLLSNCRDLTSLPKSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIG---- 677

Query: 233 GSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGED 291
             S   L  LK L  LR    I  L NV+   EA+   L  +  L  L L++     G  
Sbjct: 678 RLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFV 737

Query: 292 EERRRKKEKDE-QLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNC 348
                    D+ ++L+ L+P  +++   I  Y G  FPKWL  +S   + ++ LSSC  C
Sbjct: 738 PGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLC 797

Query: 349 EHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSS 391
             LPP+G+LP L+ L++     +++VG +F   E +S   P  S
Sbjct: 798 ISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 177/376 (47%), Gaps = 67/376 (17%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDC-----NMHDIVHDFAQ--FVCRKECLWLEIDGNKE 53
           +E +G E +N L  RSFFQEIE         +HD++HD A   F     C          
Sbjct: 443 LEDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLATSLFSASASC---------- 492

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
                  G +R + +               D   ++     S+   ++  S  P L  K 
Sbjct: 493 -------GNIREINVK--------------DYKHTV-----SIGFAAVVSSYSPSLLKKF 526

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQK 173
             LR L +S S          + ++P ++G L+HL+YL+LS    + LPE LC+L NLQ 
Sbjct: 527 VSLRVLNLSYSK---------LEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQT 577

Query: 174 LDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDG 233
           LD+  C +L  LP    KL ++R L+ D    L   P  I  LT L+TLG F+VG     
Sbjct: 578 LDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVG----S 632

Query: 234 SSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEE 293
               +L  LKNL L     I  L  V +  +AE   L  + NL  L + +    DG +  
Sbjct: 633 KKGYQLGELKNLNLCGSISITHLERVKNDTDAEA-NLSAKANLQSLSMSWDN--DGPN-- 687

Query: 294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCEHL 351
             R + K+ ++L+AL+P  N++ L I+ +GG  FP W+  + L  + ++ + SC NC  L
Sbjct: 688 --RYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCL 745

Query: 352 PPLGKLP-LEKLTLYN 366
           PP G+LP LE L L N
Sbjct: 746 PPFGELPCLENLELQN 761

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 179/374 (47%), Gaps = 54/374 (14%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDC-----NMHDIVHDFAQFVCRKECLWLEIDGNKESV 55
           +E +G E +N L  RSFFQEIE         MHD++HD A  +         I       
Sbjct: 441 LEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMFSASASSRSIRQ----- 495

Query: 56  INFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLAC 115
                       +N +    +      +  + S+  + E +S+ S      P LF +   
Sbjct: 496 ------------INVKDDEDMMFIVTNYKDMMSI-GFSEVVSSYS------PSLFKRFVS 536

Query: 116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLD 175
           LR L +S S            ++P +VG L+HL+YL+LSG  I  LP+ LC+L NLQ LD
Sbjct: 537 LRVLNLSNSE---------FEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLD 587

Query: 176 IRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSS 235
           +  C++L  LP    KL ++R+L+ D+   L  MP  I  LT L+TLG FVVG       
Sbjct: 588 LYNCQSLSCLPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVVG----ERK 642

Query: 236 TCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERR 295
             +L  L+NL L     I  L  V +  EA+   L  + NL  L + + R    E EE +
Sbjct: 643 GYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVK 702

Query: 296 RKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCEHLPP 353
                   +L+AL+P  N++ L I+ + G   P W+  + L N+ ++ +S C NC  LPP
Sbjct: 703 --------VLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPP 754

Query: 354 LGKLP-LEKLTLYN 366
            G+LP LE L L +
Sbjct: 755 FGELPCLESLELQD 768

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 178/376 (47%), Gaps = 67/376 (17%)

Query: 1   MEMIGEEYFNMLATRSFFQEIE-KD----CNMHDIVHDFAQFVCRKECLWLEIDGNKESV 55
           +E +G+E +  L  RSFFQEIE KD      MHD++HD A  +          + +  ++
Sbjct: 442 LEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLATSL-------FSANTSSSNI 494

Query: 56  INFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLAC 115
                    H+         + + F E      +  Y             LP L  K   
Sbjct: 495 REINKHSYTHM---------MSIGFAEV-----VFFY------------TLPPL-EKFIS 527

Query: 116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLD 175
           LR L +  S+           ++P ++G L+HL+YLNL G  ++ LP+ LC+L NLQ LD
Sbjct: 528 LRVLNLGDST---------FNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLD 578

Query: 176 IRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSS 235
           +++C  L  LP    KL ++R+LL D ++SL  MP  I  LT L+TLG+FVVG       
Sbjct: 579 LQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVG----RKK 634

Query: 236 TCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLE---FGRVVDGEDE 292
             +L  L NL L     I  L  V +  +A+   L  + NL  L +    FG  +   +E
Sbjct: 635 GYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEE 694

Query: 293 ERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCEH 350
            +         +L+AL+P  N+  L I  + G   P+W+  + L N+ ++ +S+  NC  
Sbjct: 695 VK---------VLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSC 745

Query: 351 LPPLGKLP-LEKLTLY 365
           LPP G LP LE L L+
Sbjct: 746 LPPFGDLPCLESLELH 761

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 190/387 (49%), Gaps = 29/387 (7%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFG 60
           +E +G EYF+ L +RS  Q+ +    MHD +++ AQF   +     E DG K  V     
Sbjct: 466 LEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQFASGEFSSKFE-DGCKLQV----S 520

Query: 61  GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIY-DESLSNLS----LNGSILPELFSKLAC 115
            + R+L    +  A  PM F     ++ L  +   SL+N S    L+  +  +L   L  
Sbjct: 521 ERTRYLSYLRDNYAE-PMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTR 579

Query: 116 LRALVISQSSSFSHPGPNLITEIPENVGKLI-HLKYLNLSGLCIKRLPETLCELYNLQKL 174
           LR L +S            I  +P +  K I H ++L+LS   +++LP++LC +YNLQ L
Sbjct: 580 LRVLSLSHYK---------IARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTL 630

Query: 175 DIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGS 234
            + +C +L+ELP  I  L+N+R L    T+ L+ MP    +L SL+TL  F V    DGS
Sbjct: 631 LLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS-DGS 688

Query: 235 STCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR-VVDGEDEE 293
               L  L +L    +  I  L  V  + +A    L ++++L  +   +       E+  
Sbjct: 689 RISELGGLHDLH--GKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNT 746

Query: 294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSCFNCEHL 351
              + + + ++ + L+P  ++E+L I  Y G  FP WL+  S + +  + L  C  C  L
Sbjct: 747 NPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSL 806

Query: 352 PPLGKLP-LEKLTLYNLKSVKRVGNEF 377
           P LG+LP L++L +  +  ++ +G +F
Sbjct: 807 PSLGQLPCLKELHISGMVGLQSIGRKF 833

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 156/353 (44%), Gaps = 50/353 (14%)

Query: 5   GEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKESVIN 57
           GE+ F+ L  R   + ++K        C +HD+V D    + +K+           S  N
Sbjct: 458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKD-----------SFSN 506

Query: 58  FFGGKVRHLGL--NFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLAC 115
             G   RHLG+  NF+             +LR ++   ++     LN S L + F+    
Sbjct: 507 PEGLNCRHLGISGNFD-----EKQIKVNHKLRGVVSTTKTGEVNKLN-SDLAKKFTDCKY 560

Query: 116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL-CIKRLPETLCELYNLQKL 174
           LR L IS+S  F  P    ++EI + +  L HL  L+LS    + + P ++ +L+NLQ L
Sbjct: 561 LRVLDISKSI-FDAP----LSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQIL 615

Query: 175 DIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGS 234
           D  +C+NL++L   I     +  L   N  SL+  P GI  L  L  L  F      +G 
Sbjct: 616 DASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNG- 674

Query: 235 STCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER 294
             C+L  +KNL  LR+ G+  L     ++E E   L N   L+ + +      D   ++ 
Sbjct: 675 --CKLSEVKNLTNLRKLGL-SLTRGDQIEEEELDSLINLSKLMSISIN---CYDSYGDDL 728

Query: 295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSC 345
             K       + AL PP  + EL + +Y G   P WL+   L  LR  Y+S C
Sbjct: 729 ITK-------IDALTPPHQLHELSLQFYPGKSSPSWLSPHKLPMLR--YMSIC 772

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 18/147 (12%)

Query: 76  LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLI 135
           LP S  + ++L+ L++    L+ L       P    +L  LR L + Q         NLI
Sbjct: 118 LPDSIGDLEQLQKLILSHNKLTEL-------PSGVWRLTNLRCLHLQQ---------NLI 161

Query: 136 TEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM 195
            +IP ++G+L++L  L+LS   +  +PE+L  L NL KLD+  C  L+ LP  I ++ N+
Sbjct: 162 EQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLS-CNKLKSLPPAISQMKNL 220

Query: 196 RSLLNDNTRSLKYMPIGISKLTSLRTL 222
           R +L+ +   ++ +P  ++++ SL  L
Sbjct: 221 R-MLDCSRNQMESIPPVLAQMESLEQL 246

Danio rerio (taxid: 7955)

>sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 119/274 (43%), Gaps = 68/274 (24%)

Query: 25  CNMHDIVHDFAQFVCRKECLWLEIDGNKESVIN--FFGGKVRHLGLNFEGGAPLPMSFFE 82
           C +HD++ +   F  ++E  +L+I  N     N    G   R +  N     P  +    
Sbjct: 491 CRLHDMMREICLFKAKEEN-FLQIVSNHSPTSNPQTLGASRRFVLHN-----PTTLHVER 544

Query: 83  FD---RLRSLLIYDESLSNLS--LNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137
           +    +LRSL++  + + N    L+GSI    F+++  LR L + Q+      G  L   
Sbjct: 545 YKNNPKLRSLVVVYDDIGNRRWMLSGSI----FTRVKLLRVLDLVQAK---FKGGKL--- 594

Query: 138 IPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRW-------------CRNLR- 183
            P ++GKLIHL+YL+L    +  LP +L  L  L  LDIR               R LR 
Sbjct: 595 -PSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRY 653

Query: 184 -ELPA--------GIGKLMNMRSLLNDNTRS-----------LKYMPIGISKLTSLRTLG 223
            ELP          +  L  + +L N +T+S           L+ + I +S+ TSL+TL 
Sbjct: 654 LELPRFMHEKTKLELSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTL- 712

Query: 224 KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLG 257
                     +S C L  L+N +++   G+  +G
Sbjct: 713 ---------SASVCGLRHLENFKIMENAGVNRMG 737

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 53/225 (23%)

Query: 76  LPMSFFEFDRLRSLLIYD-------------ESLSNLSLNGSILPELFSKLACLRALVIS 122
           LP +FF   RLR L + D             E+L  L ++ + +P++   +  L++L ++
Sbjct: 52  LPKNFFRLHRLRKLGLSDNEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVA 111

Query: 123 QSSSFSHPGPNL-------------------ITEIPENVGKLIHLKYLNLSGLCIKRLPE 163
             SS  +P P L                   +T +P + G L  L+ L L    +K LPE
Sbjct: 112 DFSS--NPIPKLPSGFSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPE 169

Query: 164 TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG 223
           T+ +L  L++LD+     + +LP  +G L  +  L  D+ + L+ +P  +  LT L  L 
Sbjct: 170 TISQLTKLKRLDLG-DNEIEDLPPYLGYLPGLHELWLDHNQ-LQRLPPELGLLTKLTYL- 226

Query: 224 KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL 268
                      S  RLE L N        I GL +++ LD A+ L
Sbjct: 227 ---------DVSENRLEELPN-------EISGLVSLTDLDLAQNL 255

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
359482769	904	PREDICTED: putative disease resistance p	0.923	0.441	0.382	1e-71
147825450	927	hypothetical protein VITISV_000086 [Viti	0.937	0.436	0.387	7e-71
359482790	923	PREDICTED: putative disease resistance p	0.932	0.436	0.378	4e-70
359482792	922	PREDICTED: putative disease resistance p	0.921	0.431	0.389	5e-70
224122696	906	cc-nbs-lrr resistance protein [Populus t	0.930	0.443	0.379	8e-70
359482788	903	PREDICTED: putative disease resistance p	0.939	0.449	0.378	9e-70
359482784	919	PREDICTED: putative disease resistance p	0.918	0.431	0.380	4e-67
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.921	0.421	0.378	1e-66
147855898	1295	hypothetical protein VITISV_034885 [Viti	0.800	0.267	0.426	5e-66
359482794	880	PREDICTED: putative disease resistance p	0.817	0.401	0.418	8e-65

>gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 258/486 (53%), Gaps = 87/486 (17%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G  YF  LA RSFFQ+ EKD       C MHDIVHDFAQF+ + EC  +E+D  K+
Sbjct: 444 MEMVGRTYFEYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQKK 503

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             ++ F  K+RH  L      P   S      L +LL  +      + +  +L E    L
Sbjct: 504 GSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKE------AFDSRVL-EALGNL 556

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL-CIKRLPETLCELYNLQ 172
            CLRAL +S +        + I E+P+ VGKLIHL+YLNLS    ++ LPET+C+LYNLQ
Sbjct: 557 TCLRALDLSSN--------DWIEELPKEVGKLIHLRYLNLSWCESLRELPETICDLYNLQ 608

Query: 173 KLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVD 232
            L+I  C +L++LP  +GKL+N+R L N  TRSLK +P GI +L+SL+TL  F+V     
Sbjct: 609 TLNIEGCSSLQKLPHAMGKLINLRHLEN-YTRSLKGLPKGIGRLSSLQTLDVFIVSS--H 665

Query: 233 GSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGED 291
           G+  C++  L+NL  LR    +EGL  V    E E+ +L N+ +   L LEFG       
Sbjct: 666 GNDECQIGDLRNLNNLRGRLSVEGLDEVKDAGEPEKAELKNRVHFQYLTLEFG------- 718

Query: 292 EERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCE 349
                +KE  + + +ALQP  N++ L IV YG   +P W+  +SL  L+ L+L  C  C 
Sbjct: 719 -----EKEGTKGVAEALQPHPNLKSLGIVDYGDREWPNWMMGSSLAQLKILHLWFCKRCP 773

Query: 350 HLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG------------------------IEESS 384
            LPPLG+LP LEKL ++ +  VK +G+EFLG                        I+E  
Sbjct: 774 CLPPLGQLPVLEKLYIWGMDGVKYIGSEFLGSSSTVFPKLKELAISGLVELKQWEIKEKE 833

Query: 385 ED---------------------DPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISH 423
           E                      D     +   +L I G P+L+ RYR+  GED HKISH
Sbjct: 834 ERSIMPCLNHLIMRGCPKLEGLPDHVLQRTPLQKLDIAGSPILKRRYRKDIGEDRHKISH 893

Query: 424 IPHIQM 429
           IP +++
Sbjct: 894 IPEVEV 899

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera]

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 189/488 (38%), Positives = 260/488 (53%), Gaps = 83/488 (17%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G  YF  LA RSFFQ+ EKD       C MHDIVHDFAQF+ + EC  +E+D  K+
Sbjct: 463 MEMVGRTYFEYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQNECFIVEVDNQKK 522

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             ++ F  K+RH  L      P   S      L +LL  +E   B+S     L  L   L
Sbjct: 523 GSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKEEF--BISXVLEALXNLLRHL 580

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IKRLPETLCELYNL 171
            CLRAL +S++         LI E+P+ VGKLIHL+YLNLS LC  ++ LPET+C+LYNL
Sbjct: 581 TCLRALDLSRN--------RLIEELPKEVGKLIHLRYLNLS-LCYRLRELPETICDLYNL 631

Query: 172 QKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGV 231
           Q L+I  C +L++LP  +GKL+N+R L N NT SLK +P GI +L+SL+TL  F+V    
Sbjct: 632 QTLNIEGCSSLQKLPQAMGKLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSS-- 689

Query: 232 DGSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE 290
            G+  C++  L+NL  LR    I+ L  V    EAE+ +L N+ +   L LEFG      
Sbjct: 690 HGNDECQIGDLRNLNNLRGGLSIQRLDEVKDAGEAEKAELKNRVHFQYLTLEFG------ 743

Query: 291 DEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNC 348
                 KKE  + + +ALQP  N++ L I  YG   +P W+  +SL  L+ L + +C  C
Sbjct: 744 ------KKEGTKGVAEALQPHPNLKSLDIFNYGDREWPNWMMGSSLAQLKILEIGNCRRC 797

Query: 349 EHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG----------------IEESSEDDPSSS 391
             LP LG+LP LEKL ++ +  VK +G+EFLG                ++E  + +    
Sbjct: 798 PCLPLLGQLPVLEKLDIWGMDGVKYIGSEFLGSSSTVFPKLKELNISRMDELKQWEIKGK 857

Query: 392 SSSS-----SELSIEGC------------------------PLLENRYREGKGEDWHKIS 422
              S     + L  E C                        P+LE RYR+  GED HKIS
Sbjct: 858 EERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIIDSPILERRYRKDIGEDRHKIS 917

Query: 423 HIPHIQMS 430
           HIP ++ S
Sbjct: 918 HIPEVKYS 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 258/489 (52%), Gaps = 86/489 (17%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G  YF  LA RSFFQ+ EKD       C MHDIVHDFAQF+   EC  +E+D  K+
Sbjct: 464 MEMVGRTYFEYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDNQKK 523

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             ++ F  K+RH  L      P   S      L +LL      +  + +  +L E    L
Sbjct: 524 GSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLL------AKRAFDSRVL-EALGHL 576

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL-CIKRLPETLCELYNLQ 172
            CLRAL +  +         LI E+P+ VGKLIHL+YLNLS    ++ LPET+C+LYNLQ
Sbjct: 577 TCLRALDLRSN--------QLIEELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYNLQ 628

Query: 173 KLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVD 232
            L+I+ C  L++LP  +GKL+N+R L N +   L+ +P GI +L+SL+TL  F+V     
Sbjct: 629 TLNIQACSRLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSS--H 686

Query: 233 GSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGED 291
           G+  C++E L+NL  LR    I+GL  V    EAE+ +L N+ +L  L LEFG    GE 
Sbjct: 687 GNDECQIEDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELQNRVHLQRLTLEFG----GE- 741

Query: 292 EERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCE 349
                  E  + + +ALQP  N++ L I+ YG   +P W+  +SL  L+ L+L  C  C 
Sbjct: 742 -------EGTKGVAEALQPHPNLKFLCIIRYGDREWPNWMMGSSLAQLKILHLRFCIRCP 794

Query: 350 HLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG------------------------IEESS 384
            LPPLG+LP LE+L +  +  +K +G+EFLG                        I+E  
Sbjct: 795 CLPPLGQLPVLEELGICFMYGLKYIGSEFLGSSSTVFPKLKGLYIYGLDELKQWEIKEKE 854

Query: 385 ED---------------------DPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISH 423
           E                      D     +   +L+I+  P+LE RYR+  GED HKISH
Sbjct: 855 ERSIMPCLNALRAQHCPKLEGLPDHVLQRAPLQKLNIKYSPVLERRYRKDIGEDGHKISH 914

Query: 424 IPHIQMSPD 432
           IP ++ S D
Sbjct: 915 IPEVEYSRD 923

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 190/488 (38%), Positives = 261/488 (53%), Gaps = 90/488 (18%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G  YF  LA RSFFQ+ EKD       C MHDIVHDFAQF+ + EC  +E+D  K+
Sbjct: 463 MEMVGRTYFEYLAARSFFQDFEKDDDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQKK 522

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             ++ F  K+RH  L      P   S      L +L      L+  + +  +L E    L
Sbjct: 523 GSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTL------LAKKAFDSRVL-EALGNL 575

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IKRLPETLCELYNL 171
            CLRAL +S++         LI E+P+ VGKLIHL+YLNLS LC  ++ LPET+C+LYNL
Sbjct: 576 TCLRALDLSRN--------RLIEELPKEVGKLIHLRYLNLS-LCYSLRELPETICDLYNL 626

Query: 172 QKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGV 231
           Q L+I+ C  +R+LP  +GKL+N+R L N NTR LK +P GI +L+SL+TL  F+V    
Sbjct: 627 QTLNIQGC-IIRKLPQAMGKLINLRHLENYNTR-LKGLPKGIGRLSSLQTLDVFIVSS-- 682

Query: 232 DGSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE 290
            G+  C++  L+NL  LR    I+GL  V    EAE+ +L N+  L  L L+FG    GE
Sbjct: 683 HGNDECQIGDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELKNKVYLQRLELKFG----GE 738

Query: 291 DEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNC 348
                   E  + + +ALQP  N++ L I  YG   +P W+  +SL  L+ L+L  C  C
Sbjct: 739 --------EGTKGVAEALQPHPNLKSLDIFNYGDREWPNWMMGSSLAQLKILHLRFCIRC 790

Query: 349 EHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG------------------------IEES 383
             LPPLG+LP LE+L + N+  V+ +G+EFLG                        I+E 
Sbjct: 791 PCLPPLGQLPILEELGILNMHGVQYIGSEFLGSSSTVFPKLKKLRISNMKELKQWEIKEK 850

Query: 384 SED---------------------DPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKIS 422
            E                      D     +   +L I+  P+LE RYR+  GED HKIS
Sbjct: 851 EERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQKLYIKYSPILERRYRKDIGEDGHKIS 910

Query: 423 HIPHIQMS 430
           HIP ++ S
Sbjct: 911 HIPEVKYS 918

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 266/509 (52%), Gaps = 107/509 (21%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDCN------MHDIVHDFAQFVCRKECLWLEIDGNKES 54
           ME++GE+YF +LA RSFFQ+ E D +      MHDIVHDFAQ++ + ECL ++++    +
Sbjct: 418 MELVGEQYFQVLAARSFFQDFETDEDEGMTFKMHDIVHDFAQYMTKNECLTVDVNTLGGA 477

Query: 55  VINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLI--YDESLSNLSLNGSILPELFSK 112
            +     +VRHL +        P+S  +   LRSLLI   D SL      G+ LP+LF +
Sbjct: 478 TVETSIERVRHLSMMLPNETSFPVSIHKAKGLRSLLIDTRDPSL------GAALPDLFKQ 531

Query: 113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC-IKRLPETLCELYNL 171
           L C+R+L +S+S          I EIP  VGKLIHL++LNL+    ++ LPET+C+L NL
Sbjct: 532 LTCIRSLNLSRSQ---------IKEIPNEVGKLIHLRHLNLAWCVELESLPETICDLCNL 582

Query: 172 QKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVV-GGG 230
           Q LD+ WCR+L+ELP  IGKL+ +R L  D++  + ++P GI ++T LRTL KF V GGG
Sbjct: 583 QSLDVTWCRSLKELPKAIGKLIKLRHLWIDSS-GVAFIPKGIERITCLRTLDKFTVCGGG 641

Query: 231 VDGSSTCRLESLKNLQ----LLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRV 286
            + S    L  LKNL      LR   +  + NV  + +A    L N++ LLCL   F   
Sbjct: 642 ENESKAANLRELKNLNHIGGSLRIDKVRDIENVRDVVDA----LLNKKRLLCLEWNFK-- 695

Query: 287 VDGEDE--ERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSS 344
             G D    +    E +  L++ L+PP ++E L I  YGG   P W+ +LT LR L L  
Sbjct: 696 --GVDSILVKTELPEHEGSLIEVLRPPSDLENLTIRGYGGLDLPNWMMTLTRLRMLSLGP 753

Query: 345 CFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESS------------------- 384
           C N E LPPLG+LP LE+L L+ LK V+R+   FLG+E+                     
Sbjct: 754 CENVEVLPPLGRLPNLERLLLFFLK-VRRLDAGFLGVEKDENEGEIARVTAFPKLKSFRI 812

Query: 385 -----------------EDDPSSSSSSS-----SELSIEGCPLLE--------------- 407
                            E+D +++S  S       L I  CPLL                
Sbjct: 813 RYLEEIEEWDGIERRVGEEDANTTSIISIMPQLQYLGIRKCPLLRALPDYVLAAPLQELE 872

Query: 408 --------NRY-REGKGEDWHKISHIPHI 427
                   NRY  E  GEDW KISHIP+I
Sbjct: 873 IMGCPNLTNRYGEEEMGEDWQKISHIPNI 901

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 258/489 (52%), Gaps = 83/489 (16%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEMIG  YF  LA RSFFQ+ EKD       C MHDIVHDFAQF+ + EC  +E+D  + 
Sbjct: 441 MEMIGRTYFEYLAARSFFQDFEKDTDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQQM 500

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             I+    K+RH+ L      P  +S +    L +LL  +   S++ +    LP L   L
Sbjct: 501 ESIDLSFKKIRHITLVVRESTPNFVSTYNMKNLHTLLAKEAFKSSVLV---ALPNLLRHL 557

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSG-LCIKRLPETLCELYNLQ 172
            CLRAL +S +         LI E+P+ VGKLIHL++LNLSG   ++ LPET+C+LYNLQ
Sbjct: 558 TCLRALDLSSN--------QLIEELPKEVGKLIHLRFLNLSGCFWLRELPETICDLYNLQ 609

Query: 173 KLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVD 232
            L+I+ C +LR+LP  +GKL+N+R L N    + K +P GI +L+SL+TL  F+V     
Sbjct: 610 TLNIQGCSSLRKLPQAMGKLINLRHLENSFLNN-KGLPKGIGRLSSLQTLNVFIVSS--H 666

Query: 233 GSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGED 291
           G+   ++  L+NL  LR +  I+GL  V    EAE+ +L N+ +L  L L F R      
Sbjct: 667 GNDEGQIGDLRNLNNLRGDLSIQGLDEVKDAGEAEKAELKNKVHLQDLTLGFDR------ 720

Query: 292 EERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCE 349
                 +E  + + +ALQP  N++ L I YYG   +P W+  +SL  L+ L L  C  C 
Sbjct: 721 ------EEGTKGVAEALQPHPNLKALHIYYYGDREWPNWMMGSSLAQLKILNLKFCERCP 774

Query: 350 HLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIE---------------------ESSEDD 387
            LPPLG+LP LE+L ++ +  VK +G+EFLG                       E  E +
Sbjct: 775 CLPPLGQLPVLEELGIWKMYGVKYIGSEFLGSSSTVFPKLKELAISGLDKLKQWEIKEKE 834

Query: 388 PSSSSSSSSELSIEGC------------------------PLLENRYREGKGEDWHKISH 423
             S     + L + GC                        P+LE RYR+  GED HKISH
Sbjct: 835 ERSIMPCLNHLIMRGCPKLEGLPGHVLQRTTLQILNIRSSPILERRYRKDIGEDRHKISH 894

Query: 424 IPHIQMSPD 432
           IP ++   D
Sbjct: 895 IPQVKCRCD 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 184/484 (38%), Positives = 257/484 (53%), Gaps = 87/484 (17%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G EYF  LA RSFFQ+ EKD       C MHDIVHDFAQF+ + EC  +E+D  K+
Sbjct: 463 MEMVGREYFEYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTQNECFVVEVDNQKK 522

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             ++ F  K+ H  L  +       S      L +LL      +  + +  +L E    L
Sbjct: 523 GSMDLFFQKICHATLVVQESTLNFASTCNMKNLHTLL------AKSAFDSRVL-EALGHL 575

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL-CIKRLPETLCELYNLQ 172
            CLRAL +S +         LI E+P+ VGKLIHL+YL+LS    ++ LPET+C+LYNLQ
Sbjct: 576 TCLRALDLSWN--------QLIEELPKEVGKLIHLRYLDLSRCQSLRELPETICDLYNLQ 627

Query: 173 KLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVD 232
            L+I++C +L++LP  +GKL+N+R L N  TRSLK +P GI +L+SL+TL  F+V     
Sbjct: 628 TLNIQYCISLQKLPQAMGKLINLRHLEN-YTRSLKGLPKGIGRLSSLQTLDVFIVSS--H 684

Query: 233 GSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGED 291
           G+  C++  L+NL  LR    I+GL  V    EAE+ +L N+ +L  L L FG    GE 
Sbjct: 685 GNDECQIGDLRNLNNLRGGLSIQGLDEVKDAGEAEKAELKNRVSLHRLALVFG----GE- 739

Query: 292 EERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNCE 349
                  E  + + +ALQP  N++ L I  YG   +P W+  +SL  L+ L + +C  C 
Sbjct: 740 -------EGTKGVAEALQPHPNLKSLCIYGYGDREWPNWMMGSSLAQLKILEIGNCRRCP 792

Query: 350 HLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG------------------------IEESS 384
            LPPLG+LP LEKL ++ +  V  +G+EFLG                        I+E  
Sbjct: 793 CLPPLGQLPVLEKLVIWKMYGVIYIGSEFLGSSSTVFPKLKELRIFGLDELKQWEIKEKE 852

Query: 385 ED---------------------DPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISH 423
           E                      D     +   +L IEG P+L+ RY +  GED HKISH
Sbjct: 853 ERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIEGSPILKRRYGKDIGEDRHKISH 912

Query: 424 IPHI 427
           IP +
Sbjct: 913 IPEV 916

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 187/494 (37%), Positives = 257/494 (52%), Gaps = 96/494 (19%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDC------NMHDIVHDFAQFVCRKECLWLEIDGNKES 54
           ME++GE YF++LA RSFFQ+ E D        MHDIVHDFAQ++ + ECL ++++    +
Sbjct: 469 MELVGERYFHVLAARSFFQDFETDIFEGMKFKMHDIVHDFAQYMTKNECLTVDVNTLGGA 528

Query: 55  VINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLI--YDESLSNLSLNGSILPELFSK 112
            +     +VRHL +        P+S  +   LRSLLI   D SL      G+ LP+LF +
Sbjct: 529 TVETSIERVRHLSMMVSEETSFPVSIHKAKGLRSLLIDTRDPSL------GAALPDLFKQ 582

Query: 113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IKRLPETLCELYN 170
           L C+R+L +S SS         I EIP  VGKLIHL+++NL+  C  ++ LPET+C+L N
Sbjct: 583 LTCIRSLNLSASS---------IKEIPNEVGKLIHLRHVNLAR-CGELESLPETMCDLCN 632

Query: 171 LQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF-VVGG 229
           LQ LD+ WCR+L+ELP  IGKL+ +R L    +  + ++P GI ++T LRTL  F V GG
Sbjct: 633 LQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRS-GVDFIPKGIERITCLRTLDVFKVCGG 691

Query: 230 GVDGSSTCRLESLKNLQLLR-ECGIEGLGN-VSHLDEAERLQLYNQQNLLCLHLEFGRVV 287
           G + S    L  LKNL  +     I  LG  +    +A   QL N++ L  L L F    
Sbjct: 692 GENESKAANLRELKNLNHIGGSLNIRNLGGGIEDASDAAEAQLKNKKRLRRLELVF---- 747

Query: 288 DGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFN 347
              D E+   +  +  L++ALQPP N+E L I  YGG   P W+ +LT L  L L  C  
Sbjct: 748 ---DREKTELQANEGSLIEALQPPSNLEYLTISSYGGFDLPNWMMTLTRLLALELHDCTK 804

Query: 348 CEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEES----------------------- 383
            E LPPLG+LP LE+L L +LK V+R+   FLGIE+                        
Sbjct: 805 LEVLPPLGRLPNLERLALRSLK-VRRLDAGFLGIEKDENASINEGEIARVTAFPKLKILE 863

Query: 384 ---------------SEDDPSSSSSSS----SELSIEGCPL------------LENRYRE 412
                           E+D +++S S      +L+I  CPL            L+  Y  
Sbjct: 864 IWNIKEWDGIERRSVGEEDATTTSISIMPQLRQLTIHNCPLLRALPDYVLAAPLQELYIG 923

Query: 413 G---KGEDWHKISH 423
           G    GEDW KISH
Sbjct: 924 GCPNLGEDWQKISH 937

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855898|emb|CAN78626.1| hypothetical protein VITISV_034885 [Vitis vinifera]

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 167/392 (42%), Positives = 229/392 (58%), Gaps = 46/392 (11%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G  YF  LA RSFFQ+ EKD       C MHDIVHDFAQF+   EC  +E+   K+
Sbjct: 505 MEMVGRTYFEYLAARSFFQDFEKDXDGNIIRCKMHDIVHDFAQFLTXNECFIVEVXNQKK 564

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
             ++ F  K+RH  L      P   S      L +L      L+  + +  +L E    L
Sbjct: 565 GSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTL------LAKKAFDSRVL-EALGHL 617

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IKRLPETLCELYNL 171
            CLRAL +S++         LI E+P+ VGKLIHL+YLNLS LC  ++ LPET+C+LYNL
Sbjct: 618 TCLRALDLSRN--------RLIEELPKEVGKLIHLRYLNLS-LCYSLRELPETICDLYNL 668

Query: 172 QKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGV 231
           Q L+I+ C  +R+LP  +GKL+N+R L N NTR LK +P GI +L+SL+TL  F+V    
Sbjct: 669 QTLNIQGC-IIRKLPQAMGKLINLRHLENYNTR-LKGLPKGIGRLSSLQTLDVFIVSS-- 724

Query: 232 DGSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE 290
            G+  C++  L+NL  LR    I+GL  V    EAE+ +L N+ +L  L LEFG      
Sbjct: 725 HGNDECQIGDLRNLNNLRGRLSIQGLDEVKDAREAEKAKLKNKVHLQRLELEFG------ 778

Query: 291 DEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNC 348
                   E  + + +ALQP  N++ L++V YG   +P W+  +SL  L+ LYL  C  C
Sbjct: 779 -------GEGTKGVAEALQPHPNLKSLYMVCYGDREWPNWMMGSSLAQLKILYLKFCERC 831

Query: 349 EHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG 379
             LPPLG+LP LEKL ++ +  VK +G+EFLG
Sbjct: 832 PCLPPLGQLPVLEKLDIWGMDGVKYIGSEFLG 863

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482794|ref|XP_002268547.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 228/392 (58%), Gaps = 39/392 (9%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKD-------CNMHDIVHDFAQFVCRKECLWLEIDGNKE 53
           MEM+G EYF  LA RSFFQ+ EKD       C MHDIVHDFAQF+ + EC  + ++  +E
Sbjct: 445 MEMVGREYFEYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTKNECFIMNVENAEE 504

Query: 54  SVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKL 113
                   K+RH  L  +   P  +S ++   L +LL+     +  S +   LP LF  L
Sbjct: 505 GRTKTSFQKIRHATLIGQQRYPNFVSTYKMKNLHTLLL---KFTFSSTSDEALPNLFQHL 561

Query: 114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IKRLPETLCELYNL 171
            CLRAL ++++         LI E+P+ VGKLIHLKYL+LS  C  ++ LPET+C+LYNL
Sbjct: 562 TCLRALNLARNP--------LIMELPKAVGKLIHLKYLSLSD-CHKLRELPETICDLYNL 612

Query: 172 QKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGV 231
           Q L+I  C +L ELP  +GKL+N+R L N     LK +P GI++L SL+TL +FVV    
Sbjct: 613 QTLNISRCFSLVELPQAMGKLINLRHLQNCGALDLKGLPKGIARLNSLQTLEEFVVSS-- 670

Query: 232 DGSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE 290
           DG + C++  L+NL  LR E  I GL  V    E ++ +L N+ ++  L L F       
Sbjct: 671 DGDAECKIGDLRNLNNLRGELEIRGLRKVEDAREVQKAELKNKIHIHHLTLVFDL----- 725

Query: 291 DEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNC 348
                  K+  + + +AL P  N++ L I  YG   +  W+  +SLT L+NL LS C  C
Sbjct: 726 -------KDGTKGVAEALHPHPNLKSLCIWGYGDIEWHDWMMRSSLTQLKNLELSHCSGC 778

Query: 349 EHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG 379
             LPPLG+LP LEKL + +++SVK +G EFLG
Sbjct: 779 RCLPPLGELPVLEKLKIKDMESVKHIGGEFLG 810

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.766	0.232	0.299	3.9e-23
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.773	0.316	0.275	1.6e-21
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.710	0.360	0.263	7.2e-11
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.282	0.102	0.338	5.3e-08
TAIR|locus:2163578	771	AT5G45500 "AT5G45500" [Arabido	0.270	0.151	0.347	8.5e-08
UNIPROTKB|D6RGK9	163	CNOT6L "CCR4-NOT transcription	0.201	0.533	0.325	1.4e-07
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.199	0.062	0.409	2.3e-07
ZFIN|ZDB-GENE-071004-97	558	zgc:171797 "zgc:171797" [Danio	0.201	0.155	0.348	4.1e-07
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.238	0.066	0.348	4.7e-07
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.212	0.153	0.351	5.9e-07

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 3.9e-23, P = 3.9e-23
 Identities = 107/357 (29%), Positives = 163/357 (45%)

Query:     1 MEMIGEEYFNMLATRSFFQEIEKDCN---MHDIVHDFAQFVCRKECLWLEIDGNKESVIN 57
             +E IG +Y   L  +SFFQ ++       MHD+++D A+ V    C  LE D   E    
Sbjct:   458 LEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPE---- 513

Query:    58 FFGGKVRHLGLN-FEGGAPLPM-SFFEFDRLRSLLIYDEXXXXXXXXXXXXPELFSKLAC 115
                   RH   +  +  A +   S    + LR++L ++              ++ + L  
Sbjct:   514 -IPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTE--KVLNPL-- 568

Query:   116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLD 175
             L AL   +  S SH     IT +P+++  L  L+YL+LS   IK LPE +C L NLQ L 
Sbjct:   569 LNALSGLRILSLSH---YQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLL 625

Query:   176 IRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSS 235
             +  CR+L  LP  I +L+N+R LL+     L  MP GI KL SL+ L  FV+G  + G+ 
Sbjct:   626 LSNCRDLTSLPKSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGR-LSGAG 683

Query:   236 TCRLESLKNLQ-LLRECGIEGLGNVSHLDEAERXXXXXXXXXXXXXXEFXXXXXXXXXXX 294
                L+ L +L+  LR   I  L NV+   EA+               ++           
Sbjct:   684 LHELKELSHLRGTLR---ISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGS 740

Query:   295 XXXXX-XXXQLLKALQPPVNVEELWIVYYGGNIFPKWL--TSLTNLRNLYLSSCFNC 348
                      ++L+ L+P  +++   I  Y G  FPKWL  +S   + ++ LSSC  C
Sbjct:   741 FNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLC 797

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 97/352 (27%), Positives = 156/352 (44%)

Query:     1 MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVINFFG 60
             +E +G EYF+ L +RS  Q+ +    MHD +++ AQF   +     E DG K  V     
Sbjct:   466 LEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQFASGEFSSKFE-DGCKLQVSE--- 521

Query:    61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDEXXXXXXXXXXXXPELFSKLACLRALV 120
              + R+L    +  A  PM F     ++ L  +               ++ S+   L  L 
Sbjct:   522 -RTRYLSYLRDNYAE-PMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSE-KLLPTLT 578

Query:   121 ISQSSSFSHPGPNLITEIPENVGKLI-HLKYLNLSGLCIKRLPETLCELYNLQKLDIRWC 179
               +  S SH     I  +P +  K I H ++L+LS   +++LP++LC +YNLQ L + +C
Sbjct:   579 RLRVLSLSH---YKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYC 635

Query:   180 RNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRL 239
              +L+ELP  I  L+N+R L    T+ L+ MP    +L SL+TL  F V    DGS    L
Sbjct:   636 SSLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS-DGSRISEL 693

Query:   240 ESLKNLQ-LLRECGIEGLGNVSHLDEAERXXXXXXXXXXXXXXEFXXXXXXXXXXXXXXX 298
               L +L   L+   ++ + +V+  D AE                                
Sbjct:   694 GGLHDLHGKLKIVELQRVVDVA--DAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRT 751

Query:   299 XXXXQLLKALQPPVNVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSCFNC 348
                 ++ + L+P  ++E+L I  Y G  FP WL+  S + +  + L  C  C
Sbjct:   752 QNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYC 803

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 92/349 (26%), Positives = 145/349 (41%)

Query:     5 GEEYFNMLATRSFFQEIEKDCNMHDI---VHDFAQFVCRKECLWLEIDGNKESVINFFGG 61
             GE+ F+ L  R   + ++K  +   I   +HD  +       L ++I   K+S  N  G 
Sbjct:   458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRD------LVIDI-AKKDSFSNPEGL 510

Query:    62 KVRHLGL--NFEGGAPLPMSFFEFDRLRSLLIYDEXXXXXXXXXXXXPELFSKLACLRAL 119
               RHLG+  NF+    + ++     +LR ++   +             + F+    LR L
Sbjct:   511 NCRHLGISGNFDE-KQIKVNH----KLRGVVSTTKTGEVNKLNSDLAKK-FTDCKYLRVL 564

Query:   120 VISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRW 178
              IS+S  F  P    ++EI + +  L HL  L+LS    + + P ++ +L+NLQ LD  +
Sbjct:   565 DISKSI-FDAP----LSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASY 619

Query:   179 CRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCR 238
             C+NL++L   I     +  L   N  SL+  P GI  L  L  L  F      +G   C+
Sbjct:   620 CQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNG---CK 676

Query:   239 LESLKNLQLLRECGIEGLGNVSHLDEAERXXXXXXXXXXXXXXEFXXXXXXXXXXXXXXX 298
             L  +KNL  LR+ G+  L     ++E E                                
Sbjct:   677 LSEVKNLTNLRKLGLS-LTRGDQIEEEELDSLINLSKLMSISINCYDSYGDDLITK---- 731

Query:   299 XXXXQLLKALQPPVNVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSC 345
                   + AL PP  + EL + +Y G   P WL+   L  LR  Y+S C
Sbjct:   732 ------IDALTPPHQLHELSLQFYPGKSSPSWLSPHKLPMLR--YMSIC 772

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 44/130 (33%), Positives = 70/130 (53%)

Query:   135 ITEIPENVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM 193
             +  +P ++G  I+L  L+L+G   +  LP ++    NLQKLD+R C  L ELP+ IG  +
Sbjct:   783 LIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAI 842

Query:   194 NMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE-SLKNLQLLRECG 252
             N+++LL D+  SL  +P  I   T+L      V     + S+   L  S+ NLQ L+E  
Sbjct:   843 NLQNLLLDDCSSLLELPSSIGNATNL------VYMNLSNCSNLVELPLSIGNLQKLQELI 896

Query:   253 IEGLGNVSHL 262
             ++G   +  L
Sbjct:   897 LKGCSKLEDL 906

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163578 AT5G45500 "AT5G45500" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 41/118 (34%), Positives = 64/118 (54%)

Query:   137 EIPENVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM 195
             E+ +N+ ++I LK L+  G+  I+RL + +C+L +L  LD+R C NL +LP  I  L  +
Sbjct:   465 ELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKAL 524

Query:   196 RSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGI 253
               L   +   +  MP  +S L +L  L  FVV    D  + C L  L +L+ LR+  I
Sbjct:   525 IYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSI 582

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|D6RGK9 CNOT6L "CCR4-NOT transcription complex subunit 6-like" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query:   135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN 194
             +  +  ++  L HL  L+L+   + R+P  + +L+NL  LD+     LR LPA +G +++
Sbjct:    45 VRSLSTSLWSLTHLTALHLNDNYLSRIPPDIAKLHNLVYLDLS-SNKLRSLPAELGNMVS 103

Query:   195 MRSLLNDNTRSLKYMPIGISKLTSLRTLG 223
             +R LL +N   L+ +P  + +L  L+TLG
Sbjct:   104 LRELLLNNNL-LRVLPYELGRLFQLQTLG 131

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0061157 "mRNA destabilization" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 36/88 (40%), Positives = 55/88 (62%)

Query:   135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN 194
             ++ +PEN+G +  LK L L G  IK LPE++  L NL+ L +R C+ ++ELP  IG L +
Sbjct:   754 LSVLPENIGAMTSLKELLLDGTAIKNLPESINRLQNLEILSLRGCK-IQELPLCIGTLKS 812

Query:   195 MRSLLNDNTRSLKYMPIGISKLTSLRTL 222
             +  L  D+T +LK +P  I  L +L+ L
Sbjct:   813 LEKLYLDDT-ALKNLPSSIGDLKNLQDL 839

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

ZFIN|ZDB-GENE-071004-97 zgc:171797 "zgc:171797" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 31/89 (34%), Positives = 53/89 (59%)

Query:   135 ITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN 194
             +  +   +  L HL  L+LS  C+ R+P  + +L+NL  LD+     +R LPA +G +++
Sbjct:    40 VRSLSSGLWSLTHLTALHLSDNCLSRIPPEIAKLHNLAFLDLS-SNKIRSLPAELGNMVS 98

Query:   195 MRSLLNDNTRSLKYMPIGISKLTSLRTLG 223
             +R LL +N + L+ +P  + KL  L+TLG
Sbjct:    99 LRELLLNNNQ-LRVLPFELGKLFQLQTLG 126

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
 Identities = 39/112 (34%), Positives = 60/112 (53%)

Query:   111 SKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYN 170
             S L CL    +S  S+ S         +PEN+G +  LK L L G  I  LP ++  L  
Sbjct:   911 SGLKCLEKFFLSGCSNLS--------VLPENIGSMPCLKELLLDGTAISNLPYSIFRLQK 962

Query:   171 LQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222
             L+KL +  CR++ ELP+ +G L ++  L  D+T +L+ +P  I  L +L+ L
Sbjct:   963 LEKLSLMGCRSIEELPSCVGYLTSLEDLYLDDT-ALRNLPSSIGDLKNLQKL 1013

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 33/94 (35%), Positives = 58/94 (61%)

Query:   129 HPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG 188
             H   NLI +IP ++G+L++L  L+LS   +  +PE+L  L NL KLD+  C  L+ LP  
Sbjct:   155 HLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLS-CNKLKSLPPA 213

Query:   189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222
             I ++ N+R +L+ +   ++ +P  ++++ SL  L
Sbjct:   214 ISQMKNLR-MLDCSRNQMESIPPVLAQMESLEQL 246

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 32/223 (14%)

Query: 43  CLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLN 102
           CLW  I  N  S +      +   G N  G   +  + F    ++++     +LSN  L+
Sbjct: 58  CLWQGITCNNSSRVV----SIDLSGKNISG--KISSAIFRLPYIQTI-----NLSNNQLS 106

Query: 103 GSILPELFSKLACLRALVISQSSSFSHPGP--------------NLIT-EIPENVGKLIH 147
           G I  ++F+  + LR L +S +++F+   P              N+++ EIP ++G    
Sbjct: 107 GPIPDDIFTTSSSLRYLNLS-NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 148 LKYLNLSG-LCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRS 205
           LK L+L G + + ++P +L  L +L+ L +   + + ++P  +G++ +++ + L  N  S
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 206 LKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL 248
            + +P  I  LTSL  L   +V   + G     L +LKNLQ L
Sbjct: 226 GE-IPYEIGGLTSLNHLD--LVYNNLTGPIPSSLGNLKNLQYL 265

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 138 IPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMR 196
           IP ++ KL HL+ +NLSG  I+  +P +L  + +L+ LD+ +      +P  +G+L ++R
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 197 SL-LNDNTRS 205
            L LN N+ S
Sbjct: 494 ILNLNGNSLS 503

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)

Query: 75  PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGP-- 132
           P+P S F   +L SL      LS+ SL+G I PEL  +L  L  L +  S++F+   P  
Sbjct: 275 PIPPSIFSLQKLISL-----DLSDNSLSGEI-PELVIQLQNLEILHLF-SNNFTGKIPVA 327

Query: 133 ---------------NLITEIPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDI 176
                              EIP+N+GK  +L  L+LS   +   +PE LC   NL KL I
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL-I 386

Query: 177 RWCRNLR-ELPAGIGKLMNMRSL-LNDNTRSLKYMPIGISKL 216
            +  +L  E+P  +G   ++R + L DN+ S + +P   +KL
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-LPSEFTKL 427

Length = 968

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 49/227 (21%)

Query: 140 ENVGKLIHLKYLNLSGL-CIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL 198
           + V  L  L+ ++L G   +K +P+ L    NL+ L +  C +L ELP+ I  L  +  L
Sbjct: 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686

Query: 199 LNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQ------LLRECG 252
                 +L+ +P GI    +L++L +  + G        RL+S  ++        L E  
Sbjct: 687 DMSRCENLEILPTGI----NLKSLYRLNLSG------CSRLKSFPDISTNISWLDLDETA 736

Query: 253 IEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP-- 310
           IE   +   L           +NL  L L          E +  K  +  Q L  L    
Sbjct: 737 IEEFPSNLRL-----------ENLDELILC---------EMKSEKLWERVQPLTPLMTML 776

Query: 311 PVNVEELWIVYYGGNI-----FPKWLTSLTNLRNLYLSSCFNCEHLP 352
             ++  L++     +I      P  + +L  L +L + +C N E LP
Sbjct: 777 SPSLTRLFL----SDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
KOG4341	483	consensus F-box protein containing LRR [General fu	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
KOG4341	483	consensus F-box protein containing LRR [General fu	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
PLN03150	623	hypothetical protein; Provisional	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.58
PLN03150	623	hypothetical protein; Provisional	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.27
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.11
PRK15386	426	type III secretion protein GogB; Provisional	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.89
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.06
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.2
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.19
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.49
smart00370	26	LRR Leucine-rich repeats, outliers.	89.49
KOG4308	478	consensus LRR-containing protein [Function unknown	87.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.59
KOG4308	478	consensus LRR-containing protein [Function unknown	83.85

>PLN03210 Resistant to P

Probab=99.96  E-value=7.7e-28  Score=260.15  Aligned_cols=378  Identities=22%  Similarity=0.237  Sum_probs=248.8

Q ss_pred             HHHHHHhCCCCccccCCeeecHHHHHHHHHhhccce--------EEeecCCCccceecccCCceEEEEeecCCCCC---C
Q 037465            8 YFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCRKEC--------LWLEIDGNKESVINFFGGKVRHLGLNFEGGAP---L   76 (432)
Q Consensus         8 ~~~~L~~~~li~~~~~~~~mhdl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~L~l~~~~~~~---~   76 (432)
                      -++.|++++||+.....+.|||++++||+++++++.        .|...+.......+.+..+++.+.+....+.+   -
T Consensus       471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~  550 (1153)
T PLN03210        471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH  550 (1153)
T ss_pred             ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence            478999999999877679999999999999998753        22222111222334456778888877665544   2


Q ss_pred             CccccccCcccEEEEecCCcCc-cCccCCcchhhhccC-CcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeC
Q 037465           77 PMSFFEFDRLRSLLIYDESLSN-LSLNGSILPELFSKL-ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLS  154 (432)
Q Consensus        77 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~  154 (432)
                      +.+|..|++|+.|.+..+.... ...... ++..+..+ ++||.|++.+         +.++.+|..+ ...+|+.|+++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~-lp~~~~~lp~~Lr~L~~~~---------~~l~~lP~~f-~~~~L~~L~L~  619 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGFDYLPPKLRLLRWDK---------YPLRCMPSNF-RPENLVKLQMQ  619 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceee-cCcchhhcCcccEEEEecC---------CCCCCCCCcC-CccCCcEEECc
Confidence            4578899999999997663211 011222 23334444 4588888888         6778888766 46788888888


Q ss_pred             CccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCC
Q 037465          155 GLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGS  234 (432)
Q Consensus       155 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~  234 (432)
                      ++.+..+|..+..+++|+.|+++++..+..+| .++.+++|+.|++++|.....+|..++.+++|+.|++.+|....   
T Consensus       620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~---  695 (1153)
T PLN03210        620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE---  695 (1153)
T ss_pred             CccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC---
Confidence            88888888778888888888888877677777 47778888888888887788888888888888888887765442   


Q ss_pred             CCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH-------hhhhhhhHhhhh-
Q 037465          235 STCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER-------RRKKEKDEQLLK-  306 (432)
Q Consensus       235 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~~~~~~-  306 (432)
                        ..+.. .++++|+.|.+++|..+...+.       ..++|+.|+++++.+..-+....       .........+.. 
T Consensus       696 --~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        696 --ILPTG-INLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             --ccCCc-CCCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence              12222 2567777888877765443221       12355555555554221110000       000000000000 


Q ss_pred             -------cCCCCCCCcEEEEeeeCC-CCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccc
Q 037465          307 -------ALQPPVNVEELWIVYYGG-NIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEF  377 (432)
Q Consensus       307 -------~l~~~~~L~~L~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~  377 (432)
                             ....+++|+.|++++|.. ..+|.++.++++|+.|++++|..++.+|....++ |+.|++++|..++.+|...
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~  845 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS  845 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence                   112246888899988754 4478888899999999999998888888655788 9999999998887765421


Q ss_pred             cCC-------CCCCCCCCC--CCCCCcceEEEeCCcccccccc
Q 037465          378 LGI-------EESSEDDPS--SSSSSSSELSIEGCPLLENRYR  411 (432)
Q Consensus       378 ~~~-------~~~~~~~~~--~~~~~L~~L~i~~cp~L~~~~~  411 (432)
                      ...       .....+ |.  +.+++|+.|++++|++|+.+..
T Consensus       846 ~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        846 TNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             cccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCc
Confidence            100       000001 21  4577888888888888887643

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-27  Score=246.61  Aligned_cols=368  Identities=25%  Similarity=0.221  Sum_probs=253.5

Q ss_pred             ChhHHHHHHHHHHhCCCCccccC-----CeeecHHHHHHHHHhhc-----cceEEeecC-CCccceecccCCceEEEEee
Q 037465            1 MEMIGEEYFNMLATRSFFQEIEK-----DCNMHDIVHDFAQFVCR-----KECLWLEID-GNKESVINFFGGKVRHLGLN   69 (432)
Q Consensus         1 ~e~~~~~~~~~L~~~~li~~~~~-----~~~mhdl~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~i~~L~l~   69 (432)
                      +|++|++|+.+||.++|++....     .|+|||++|+||.|+|.     .+..+.... +.........+..+|++++.
T Consensus       452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~  531 (889)
T KOG4658|consen  452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM  531 (889)
T ss_pred             hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence            47899999999999999999873     29999999999999999     555444443 33333334457899999999


Q ss_pred             cCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCcccc
Q 037465           70 FEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLK  149 (432)
Q Consensus        70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~  149 (432)
                      ++.+..++.. .++++|++|.+.+|.    .....+...+|..++.|++||+++|        .....+|.++++|.+||
T Consensus       532 ~~~~~~~~~~-~~~~~L~tLll~~n~----~~l~~is~~ff~~m~~LrVLDLs~~--------~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  532 NNKIEHIAGS-SENPKLRTLLLQRNS----DWLLEISGEFFRSLPLLRVLDLSGN--------SSLSKLPSSIGELVHLR  598 (889)
T ss_pred             ccchhhccCC-CCCCccceEEEeecc----hhhhhcCHHHHhhCcceEEEECCCC--------CccCcCChHHhhhhhhh
Confidence            9999887777 456689999999984    1134446677999999999999987        77899999999999999


Q ss_pred             EEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCc--cccCCccCCcccccccccceEe
Q 037465          150 YLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRS--LKYMPIGISKLTSLRTLGKFVV  227 (432)
Q Consensus       150 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~--~~~~p~~l~~l~~L~~L~l~~~  227 (432)
                      ||+++++.+..+|..+++|++|.+|++..+..+..+|.....+++|++|.+.....  ....-..+..+.+|+.+.....
T Consensus       599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            99999999999999999999999999999987777777777799999999877641  1111122344445554444322


Q ss_pred             cccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhc
Q 037465          228 GGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKA  307 (432)
Q Consensus       228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (432)
                      ..       .....+..+++|+.+...-+... .........+..+.+|+.|.+.++...+....           ....
T Consensus       679 s~-------~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-----------~~~~  739 (889)
T KOG4658|consen  679 SV-------LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIE-----------WEES  739 (889)
T ss_pred             hh-------HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcc-----------cccc
Confidence            22       12334444555554222211000 12234566788899999999999983322110           0000


Q ss_pred             CC---CCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cc----------eE-ecccccccc
Q 037465          308 LQ---PPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LE----------KL-TLYNLKSVK  371 (432)
Q Consensus       308 l~---~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~----------~L-~l~~c~~l~  371 (432)
                      ..   .++++..+...++.....+.|....|+|+.|.+.+|.....+. ....+. ++          .+ .+.+.+.++
T Consensus       740 ~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~  819 (889)
T KOG4658|consen  740 LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLP  819 (889)
T ss_pred             cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCc
Confidence            11   2446666777778887778888889999999999998777543 222222 33          22 222222222


Q ss_pred             ccCccccCCCCCCCCCCCCCCCCcceEEEeCCccccccccC
Q 037465          372 RVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRYRE  412 (432)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~  412 (432)
                      .+-..-            -.++.|+.+.+..||+++.....
T Consensus       820 ~i~~~~------------l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  820 QLYWLP------------LSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             eeEecc------------cCccchhheehhcCcccccCccc
Confidence            221110            13556888888888888866544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=5.5e-26  Score=244.95  Aligned_cols=271  Identities=20%  Similarity=0.236  Sum_probs=170.5

Q ss_pred             CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.|+++++.+.. ++..+..+++|++|++++|     .+.+.++...+..+++|++|++++|        ...+.+
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-----~~~~~ip~~~~~~l~~L~~L~Ls~n--------~l~~~~  134 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-----QLSGPIPDDIFTTSSSLRYLNLSNN--------NFTGSI  134 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-----ccCCcCChHHhccCCCCCEEECcCC--------cccccc
Confidence            4579999999888765 6778889999999999999     4555545565668899999999885        222334


Q ss_pred             CccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465          139 PENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT  217 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~  217 (432)
                      |.  +.+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++.+++|++|++++|.....+|..++.++
T Consensus       135 p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (968)
T PLN00113        135 PR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK  212 (968)
T ss_pred             Cc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence            42  44677777777777754 5666677777777777777765566677777777777777777766666676677777


Q ss_pred             ccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhh
Q 037465          218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK  297 (432)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  297 (432)
                      +|++|++.++...     ...+..++++++|+.|++.++...    ...+..+..+++|+.|++++|.+           
T Consensus       213 ~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l-----------  272 (968)
T PLN00113        213 SLKWIYLGYNNLS-----GEIPYEIGGLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNKL-----------  272 (968)
T ss_pred             CccEEECcCCccC-----CcCChhHhcCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCee-----------
Confidence            7777777666544     234455666667777766653221    12334455666666666666652           


Q ss_pred             hhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465          298 KEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       298 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~  368 (432)
                         .+..+..+..+++|++|++++|... .+|.++..+++|+.|++++|...+.+| .++.++ |+.|++++|.
T Consensus       273 ---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        273 ---SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             ---eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence               2223334444555555555554433 235555555555555555554444333 244455 5555555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=3.1e-25  Score=239.09  Aligned_cols=175  Identities=20%  Similarity=0.268  Sum_probs=103.7

Q ss_pred             CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.|+++++.+.. +|.  ..+++|++|++++|.     +.+. ++..+..+++|++|++++|        ...+.+
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-----~~~~-~p~~~~~l~~L~~L~L~~n--------~l~~~~  180 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-----LSGE-IPNDIGSFSSLKVLDLGGN--------VLVGKI  180 (968)
T ss_pred             CCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-----cccc-CChHHhcCCCCCEEECccC--------cccccC
Confidence            4567777777776654 332  346667777777763     3333 3444666677777777663        223455


Q ss_pred             CccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465          139 PENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT  217 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~  217 (432)
                      |..++++++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++.+++|++|++++|...+.+|..++.++
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            666666666666666666643 4566666666666666666665556666666666666666666655555666666666


Q ss_pred             ccccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465          218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG  255 (432)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (432)
                      +|+.|++..+...     ...+..+.++++|+.|++++
T Consensus       261 ~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        261 NLQYLFLYQNKLS-----GPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             CCCEEECcCCeee-----ccCchhHhhccCcCEEECcC
Confidence            6666666655443     22333444455555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=6.3e-25  Score=207.85  Aligned_cols=309  Identities=25%  Similarity=0.258  Sum_probs=222.0

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      ++.+|++..+.+..+-..+..++.||++++..|.++     .+.+|..+-.+..|.+||||.         +.+++.|..
T Consensus        56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK-----nsGiP~diF~l~dLt~lDLSh---------NqL~EvP~~  121 (1255)
T KOG0444|consen   56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK-----NSGIPTDIFRLKDLTILDLSH---------NQLREVPTN  121 (1255)
T ss_pred             hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc-----cCCCCchhcccccceeeecch---------hhhhhcchh
Confidence            455555555555555555566666666666666442     333555588899999999999         889999999


Q ss_pred             ccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                      +..-+++-.|+|++|+|+++|.. +.+++.|-+||+++|+ ++.+|+.+.++.+|+.|.+++|+..-.--.++..+++|+
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence            98899999999999999999964 5688999999999988 999999999999999999999976544334556778888


Q ss_pred             cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465          221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK  300 (432)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  300 (432)
                      +|.++++....    ...+..+..+.+|+.++++. ..++    ..+..+.++.+|+.|++++|.+..            
T Consensus       201 vLhms~TqRTl----~N~Ptsld~l~NL~dvDlS~-N~Lp----~vPecly~l~~LrrLNLS~N~ite------------  259 (1255)
T KOG0444|consen  201 VLHMSNTQRTL----DNIPTSLDDLHNLRDVDLSE-NNLP----IVPECLYKLRNLRRLNLSGNKITE------------  259 (1255)
T ss_pred             hhhcccccchh----hcCCCchhhhhhhhhccccc-cCCC----cchHHHhhhhhhheeccCcCceee------------
Confidence            88888776554    56788888888999988876 2222    245667888999999999987322            


Q ss_pred             hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC-CCC-CCCCcc-cceEeccccccccccCccc
Q 037465          301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE-HLP-PLGKLP-LEKLTLYNLKSVKRVGNEF  377 (432)
Q Consensus       301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~  377 (432)
                         +--......+|++|+++.|..+.+|+.+..+++|+.|.+.+|...- .+| .+|++- |+.+...++. ++-+|..+
T Consensus       260 ---L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEgl  335 (1255)
T KOG0444|consen  260 ---LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGL  335 (1255)
T ss_pred             ---eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhh
Confidence               1122233457888888888888888888888888888888875432 455 466666 6666665554 55555544


Q ss_pred             cCCCCCCCCC---------CC--CCCCCcceEEEeCCccccccc
Q 037465          378 LGIEESSEDD---------PS--SSSSSSSELSIEGCPLLENRY  410 (432)
Q Consensus       378 ~~~~~~~~~~---------~~--~~~~~L~~L~i~~cp~L~~~~  410 (432)
                      .....+..+.         |.  ..++.|+.|+++.+|+|-.-.
T Consensus       336 cRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            3332222221         22  358899999999999996553

>PLN03210 Resistant to P

Probab=99.86  E-value=4.5e-21  Score=207.78  Aligned_cols=147  Identities=27%  Similarity=0.326  Sum_probs=83.5

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+++.|.+.++.+..+|..| ...+|+.|++.++.+..       ++..+..+++|++|++++|        ..++.+| 
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~~--------~~l~~ip-  651 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRGS--------KNLKEIP-  651 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-------cccccccCCCCCEEECCCC--------CCcCcCC-
Confidence            34566666665555555554 35566666666664321       2223455666666666664        3455555 


Q ss_pred             cccCCccccEEEeCCcc-ccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          141 NVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      .+..+++|++|++++|. +..+|..++.+++|+.|++++|..+..+|..+ .+++|+.|++++|..+..+|..   .++|
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL  727 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI  727 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence            35556666666666655 55666666666666666666666566666544 5666666666666555444432   2344


Q ss_pred             ccccceEec
Q 037465          220 RTLGKFVVG  228 (432)
Q Consensus       220 ~~L~l~~~~  228 (432)
                      +.|++.++.
T Consensus       728 ~~L~L~~n~  736 (1153)
T PLN03210        728 SWLDLDETA  736 (1153)
T ss_pred             CeeecCCCc
Confidence            455544443

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=5.4e-22  Score=186.71  Aligned_cols=310  Identities=18%  Similarity=0.205  Sum_probs=168.6

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ++..+.|+++++.+..+ +..|.++++|+.+.+.+|.+     +.  +|.+.....+|+.|+|.+         |.+.++
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-----t~--IP~f~~~sghl~~L~L~~---------N~I~sv  140 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-----TR--IPRFGHESGHLEKLDLRH---------NLISSV  140 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-----hh--cccccccccceeEEeeec---------cccccc
Confidence            55666677776666653 33456677777777776643     11  455444555577777766         555555


Q ss_pred             -CccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465          139 -PENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       139 -p~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                       .+++..++.||.|+|+.|.|..+|. ++..-.++++|+|++|.+..--...+..+.+|..|.++.|+...--+..+.++
T Consensus       141 ~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L  220 (873)
T KOG4194|consen  141 TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL  220 (873)
T ss_pred             cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc
Confidence             3455666677777777777666653 45555667777777776333333445666677777777775544333556667


Q ss_pred             cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh
Q 037465          217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR  296 (432)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (432)
                      ++|+.|++..+.+..     .....|..++.|+.+.+.+    .++.......+..+.++++|+++.|++          
T Consensus       221 ~~L~~LdLnrN~iri-----ve~ltFqgL~Sl~nlklqr----N~I~kL~DG~Fy~l~kme~l~L~~N~l----------  281 (873)
T KOG4194|consen  221 PKLESLDLNRNRIRI-----VEGLTFQGLPSLQNLKLQR----NDISKLDDGAFYGLEKMEHLNLETNRL----------  281 (873)
T ss_pred             chhhhhhccccceee-----ehhhhhcCchhhhhhhhhh----cCcccccCcceeeecccceeecccchh----------
Confidence            777777777776552     1233455566666665554    222222233455666666666666662          


Q ss_pred             hhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccc
Q 037465          297 KKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKR  372 (432)
Q Consensus       297 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~  372 (432)
                          ..---.++-.+..|+.|++++|...++ ++.-...++|+.|++++|+ ++.++  .+..+. |++|.++++. +.+
T Consensus       282 ----~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~  355 (873)
T KOG4194|consen  282 ----QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS-IDH  355 (873)
T ss_pred             ----hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc-hHH
Confidence                222223444555566666665555443 2222345566666666653 23222  133344 5555555544 444


Q ss_pred             cCcccc-CCCCCCCCC---------------CCCCCCCcceEEEeCCcccccccc
Q 037465          373 VGNEFL-GIEESSEDD---------------PSSSSSSSSELSIEGCPLLENRYR  411 (432)
Q Consensus       373 ~~~~~~-~~~~~~~~~---------------~~~~~~~L~~L~i~~cp~L~~~~~  411 (432)
                      +....+ +...++.++               +-..+++|+.|.+.|+ +|+.+..
T Consensus       356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k  409 (873)
T KOG4194|consen  356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK  409 (873)
T ss_pred             HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch
Confidence            433211 111111111               1134777777777773 5555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.1e-22  Score=189.46  Aligned_cols=200  Identities=21%  Similarity=0.164  Sum_probs=89.9

Q ss_pred             CceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-
Q 037465           61 GKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-  138 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-  138 (432)
                      +++++|.+..+.+..+ .+.+..++.||+|+++.|.++.      +....|..-.++++|+|++         |.++.+ 
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~------i~~~sfp~~~ni~~L~La~---------N~It~l~  189 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE------IPKPSFPAKVNIKKLNLAS---------NRITTLE  189 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc------ccCCCCCCCCCceEEeecc---------ccccccc
Confidence            3444444444444432 1233344444444444443211      1122233444555555555         444444 


Q ss_pred             CccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccC-ChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465          139 PENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLREL-PAGIGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                      ...|..+.+|-.|.|+.|+++.+|.. +..|++|+.|+|..|. ++.+ -..+.++++|+.|.+..|....--...+..|
T Consensus       190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l  268 (873)
T KOG4194|consen  190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL  268 (873)
T ss_pred             cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence            33445555555555555555555543 3335566666665555 3322 1223344444444444442222212223344


Q ss_pred             cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      .++++|++..+...     ...-..+-.++.|+.|+++.    ..+.......|..+++|++|+++.|.
T Consensus       269 ~kme~l~L~~N~l~-----~vn~g~lfgLt~L~~L~lS~----NaI~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQ-----AVNEGWLFGLTSLEQLDLSY----NAIQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             cccceeecccchhh-----hhhcccccccchhhhhccch----hhhheeecchhhhcccceeEeccccc
Confidence            44444444444333     11223333455555555554    22222334455666666666666666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=1.9e-22  Score=191.19  Aligned_cols=267  Identities=21%  Similarity=0.205  Sum_probs=162.1

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc--c
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT--E  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~--~  137 (432)
                      .++++.|.++..+++.+|..++.+.+|+.|.+..|.+.     .  +-..++.++.||.+++..|         +++  -
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~--vhGELs~Lp~LRsv~~R~N---------~LKnsG   94 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----S--VHGELSDLPRLRSVIVRDN---------NLKNSG   94 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----h--hhhhhccchhhHHHhhhcc---------ccccCC
Confidence            44566666777766667777777777777777666431     1  2223566666777776663         332  2


Q ss_pred             cCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhh-hcccccceEEcCCCCccccCCccCCcc
Q 037465          138 IPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       138 lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                      +|..+..|..|.+|+|++|.+...|..+..-+++-+|++++|. ++.+|..+ .+++.|-.|++++| .+..+|+++.++
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL  172 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL  172 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence            5666666777777777777777777666666777777777666 66666553 35666666777766 456666666677


Q ss_pred             cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh
Q 037465          217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR  296 (432)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (432)
                      ..|+.|.+++++..     ......+..++.|+.|.+++....-   ...+..+..+.+|..++++.|+           
T Consensus       173 ~~LqtL~Ls~NPL~-----hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~-----------  233 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLN-----HFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENN-----------  233 (1255)
T ss_pred             hhhhhhhcCCChhh-----HHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccC-----------
Confidence            77777777666654     3344445555556666665533221   1234455566666666666665           


Q ss_pred             hhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465          297 KKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       297 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~  368 (432)
                          ...+++.+-.+++|..|+|++|..+.+......-.+|+.|+++.| .++.+| .+.+++ |+.|.+.++.
T Consensus       234 ----Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  234 ----LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             ----CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc
Confidence                233444555566666666666666655544445566666666666 344444 355666 7777666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=2.4e-20  Score=168.42  Aligned_cols=271  Identities=23%  Similarity=0.215  Sum_probs=184.5

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      ....+.+..++++.+...+.++..|.+|++..|++     ..  +|++++.+..+..|+++.         +.+..+|+.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-----~~--lp~aig~l~~l~~l~vs~---------n~ls~lp~~  109 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL-----SQ--LPAAIGELEALKSLNVSH---------NKLSELPEQ  109 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchh-----hh--CCHHHHHHHHHHHhhccc---------chHhhccHH
Confidence            35556667777766666777777777888777743     22  455577777777777777         667777777


Q ss_pred             ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT  221 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  221 (432)
                      ++.+..|+.|+.+++.+..+|++++.+-.|+.++..+|. +..+|.+++.+.+|..+++.+| ....+|+..-.++.|++
T Consensus       110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~  187 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKH  187 (565)
T ss_pred             HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHh
Confidence            777777777777777777777777777777777777776 7777777777777777777777 44455554445777777


Q ss_pred             ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhh
Q 037465          222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKD  301 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  301 (432)
                      ++...+....      .++.++.+.+|..|++...+-      .+.+++..|+.|.+|++..|.               .
T Consensus       188 ld~~~N~L~t------lP~~lg~l~~L~~LyL~~Nki------~~lPef~gcs~L~Elh~g~N~---------------i  240 (565)
T KOG0472|consen  188 LDCNSNLLET------LPPELGGLESLELLYLRRNKI------RFLPEFPGCSLLKELHVGENQ---------------I  240 (565)
T ss_pred             cccchhhhhc------CChhhcchhhhHHHHhhhccc------ccCCCCCccHHHHHHHhcccH---------------H
Confidence            7766655443      667777777777776665221      112366777777777777766               2


Q ss_pred             Hhhh-hcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcccceEeccccccccccCcccc
Q 037465          302 EQLL-KALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFL  378 (432)
Q Consensus       302 ~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~L~~L~l~~c~~l~~~~~~~~  378 (432)
                      ..++ +....++++..|++.++...+.|+.+.-+.+|.+|++++|....-.+.+|++.|+.|-+.+++ ++.+..++.
T Consensus       241 ~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP-lrTiRr~ii  317 (565)
T KOG0472|consen  241 EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP-LRTIRREII  317 (565)
T ss_pred             HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc-hHHHHHHHH
Confidence            2222 233467777777887777777777777777788888887744444445676667777777777 666655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=9.4e-20  Score=164.66  Aligned_cols=242  Identities=24%  Similarity=0.282  Sum_probs=212.2

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ...+..+.+..+....+|.++..+.++..++++.|+++.       +|..+..+..|+.|+.++         +....+|
T Consensus        67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~-------lp~~i~s~~~l~~l~~s~---------n~~~el~  130 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE-------LPEQIGSLISLVKLDCSS---------NELKELP  130 (565)
T ss_pred             ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh-------ccHHHhhhhhhhhhhccc---------cceeecC
Confidence            445677888899999999999999999999999996432       666699999999999999         8899999


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ++++.+..|..++..+|++.++|+.++.+.+|..+++.+|. +..+|+...+|+.|++|+...| .++.+|+.++.+.+|
T Consensus       131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L  208 (565)
T KOG0472|consen  131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESL  208 (565)
T ss_pred             chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhh
Confidence            99999999999999999999999999999999999999998 8888888777999999999988 788999999999999


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      ..|++..+...       ..++|+.+..|..++++.    ..+........+.++++..|++..|.              
T Consensus       209 ~~LyL~~Nki~-------~lPef~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdNk--------------  263 (565)
T KOG0472|consen  209 ELLYLRRNKIR-------FLPEFPGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDNK--------------  263 (565)
T ss_pred             HHHHhhhcccc-------cCCCCCccHHHHHHHhcc----cHHHhhHHHHhcccccceeeeccccc--------------
Confidence            99999988876       455888888899988876    33433445566789999999999998              


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCC
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCF  346 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  346 (432)
                       ..+++..+..+.+|++|+++++..+.+|..++++ .|+.|.+.||+
T Consensus       264 -lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  264 -LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             -cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence             4566667778899999999999999999999999 99999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.71  E-value=2e-19  Score=177.90  Aligned_cols=200  Identities=27%  Similarity=0.315  Sum_probs=111.9

Q ss_pred             ccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCc
Q 037465          171 LQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE  250 (432)
Q Consensus       171 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~  250 (432)
                      |++++++.+. +..+|.+++.+.+|+.++..+|.. ..+|..+...++|+.|.+..+....      .++.+..++.|+.
T Consensus       243 l~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y------ip~~le~~~sL~t  314 (1081)
T KOG0618|consen  243 LQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEY------IPPFLEGLKSLRT  314 (1081)
T ss_pred             ceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh------CCCcccccceeee
Confidence            4444444444 445677777888888888877743 5555555555556655555554432      3333333444444


Q ss_pred             eeeCCCC--CC-------------------------------------------CCchhhhhcccccccCCceEEEeecc
Q 037465          251 CGIEGLG--NV-------------------------------------------SHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       251 L~l~~~~--~~-------------------------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      |++....  ..                                           ....+.....+.++.+|+.|+|+.|+
T Consensus       315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            4433211  00                                           01111222334444556666666554


Q ss_pred             ccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEec
Q 037465          286 VVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTL  364 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l  364 (432)
                      +              .......+.++..|+.|+++||....+|+.+..++.|+.|...+| .+...|++.++| |+.+|+
T Consensus       395 L--------------~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  395 L--------------NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDL  459 (1081)
T ss_pred             c--------------ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEec
Confidence            1              111222344555566666666666666666666666666655555 344566778888 999999


Q ss_pred             cccccccccCccccCCCCCCCCCCCCCC-CCcceEEEeCCccc
Q 037465          365 YNLKSVKRVGNEFLGIEESSEDDPSSSS-SSSSELSIEGCPLL  406 (432)
Q Consensus       365 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~i~~cp~L  406 (432)
                      +.+. ++.+..            |...+ |+||.|+++|++.+
T Consensus       460 S~N~-L~~~~l------------~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  460 SCNN-LSEVTL------------PEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ccch-hhhhhh------------hhhCCCcccceeeccCCccc
Confidence            7665 766643            22245 89999999999864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=2.6e-18  Score=170.08  Aligned_cols=335  Identities=19%  Similarity=0.182  Sum_probs=211.4

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      ++++|+++++.+..+|..+..+.+|+.|.+++|.+..       .|....++.+|++|.|.+         +....+|.+
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~-------vp~s~~~~~~l~~lnL~~---------n~l~~lP~~  109 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS-------VPSSCSNMRNLQYLNLKN---------NRLQSLPAS  109 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhh-------Cchhhhhhhcchhheecc---------chhhcCchh
Confidence            4888888888888888888888889999988886533       455678888888888888         778888888


Q ss_pred             ccCCccccEEEeCCccccccchhhhccC----------------------------------------CccE-Eeccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPETLCELY----------------------------------------NLQK-LDIRWCR  180 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~----------------------------------------~L~~-L~l~~~~  180 (432)
                      +..+++|++|++++|.+..+|..+..+.                                        +|++ |++++|.
T Consensus       110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~  189 (1081)
T KOG0618|consen  110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE  189 (1081)
T ss_pred             HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence            8888888888888887665554322221                                        2222 4555444


Q ss_pred             ccc----------cC--------------C---------------hhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465          181 NLR----------EL--------------P---------------AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT  221 (432)
Q Consensus       181 ~~~----------~l--------------p---------------~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  221 (432)
                      ...          .+              |               .....-.+|+.++++.+ ....+|.+++.+.+|+.
T Consensus       190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~  268 (1081)
T KOG0618|consen  190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEA  268 (1081)
T ss_pred             hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccceE
Confidence            220          00              0               00012235666666666 56678899999999999


Q ss_pred             ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhh
Q 037465          222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKD  301 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  301 (432)
                      +.+..+....      .+..+...++|+.+.+..++-     .-.+..+...++|++|++..|.+.+.++.-........
T Consensus       269 l~~n~N~l~~------lp~ri~~~~~L~~l~~~~nel-----~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l  337 (1081)
T KOG0618|consen  269 LNANHNRLVA------LPLRISRITSLVSLSAAYNEL-----EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASL  337 (1081)
T ss_pred             ecccchhHHh------hHHHHhhhhhHHHHHhhhhhh-----hhCCCcccccceeeeeeehhccccccchHHHhhhhHHH
Confidence            9998887754      667777788888887765321     11234566788999999999998877663322222111


Q ss_pred             Hhhhhc---C--------CCCCCCcEEEEeeeCCCC-CChhhhccCCCcEEEEeCCCCCCCCCC--CCCcc-cceEeccc
Q 037465          302 EQLLKA---L--------QPPVNVEELWIVYYGGNI-FPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYN  366 (432)
Q Consensus       302 ~~~~~~---l--------~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~l~-L~~L~l~~  366 (432)
                      ..+-..   +        ...+.|+.|++.+|..+. .-+.+-++++||.|++++| .++.+|.  +.+++ ||+|++++
T Consensus       338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG  416 (1081)
T KOG0618|consen  338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG  416 (1081)
T ss_pred             HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc
Confidence            111100   1        112346666666655543 1223457888888888888 4555553  56778 88888888


Q ss_pred             cccccccCccccCCCCCCCCC---------CC-CCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465          367 LKSVKRVGNEFLGIEESSEDD---------PS-SSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSP  431 (432)
Q Consensus       367 c~~l~~~~~~~~~~~~~~~~~---------~~-~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~  431 (432)
                      +. ++.+|........++.+-         |+ ..++.|+.++++ |-.|+++..... ..|   +.+.++.++|
T Consensus       417 Nk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~---p~LkyLdlSG  485 (1081)
T KOG0618|consen  417 NK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA-LPS---PNLKYLDLSG  485 (1081)
T ss_pred             ch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhh-CCC---cccceeeccC
Confidence            77 777776443222111110         33 457888888886 456666544322 334   4444444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.8e-17  Score=133.32  Aligned_cols=153  Identities=25%  Similarity=0.316  Sum_probs=97.7

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      .++|+++.++.+.+..+|+.+.++.+|++|++++|.+     ..  +|..+++++.||.|+++-         +.+..+|
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-----e~--lp~~issl~klr~lnvgm---------nrl~~lp   95 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-----EE--LPTSISSLPKLRILNVGM---------NRLNILP   95 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-----hh--cChhhhhchhhhheecch---------hhhhcCc
Confidence            4566666666666666666666666666666666633     22  444466666666666665         5566666


Q ss_pred             ccccCCccccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT  217 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~  217 (432)
                      ..|+.++.|+.|++.+|++.  .+|..+..+.-|+.|.+.+|. .+.+|.+++++++|+.|.+.+| .+-.+|..++.++
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt  173 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLT  173 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHH
Confidence            66666666666666666654  566666666666666666665 6666666666666666666666 3445666666666


Q ss_pred             ccccccceEeccc
Q 037465          218 SLRTLGKFVVGGG  230 (432)
Q Consensus       218 ~L~~L~l~~~~~~  230 (432)
                      .|++|.+.++...
T Consensus       174 ~lrelhiqgnrl~  186 (264)
T KOG0617|consen  174 RLRELHIQGNRLT  186 (264)
T ss_pred             HHHHHhcccceee
Confidence            6666666665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.58  E-value=9.1e-15  Score=149.50  Aligned_cols=244  Identities=21%  Similarity=0.251  Sum_probs=159.5

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+...+.+.+.++..+|..+.  ++|+.|++++|+++.       +|..+  ..+|++|++++         +.++.+|
T Consensus       177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-------LP~~l--~~nL~~L~Ls~---------N~LtsLP  236 (754)
T PRK15370        177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-------LPENL--QGNIKTLYANS---------NQLTSIP  236 (754)
T ss_pred             ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-------CChhh--ccCCCEEECCC---------CccccCC
Confidence            3456788888888888887663  579999999996532       33323  25899999998         6678888


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ..+.  .+|+.|++++|.+..+|..+.  .+|+.|++++|. +..+|..+.  ++|+.|++++| .+..+|..+.  ++|
T Consensus       237 ~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL  306 (754)
T PRK15370        237 ATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGI  306 (754)
T ss_pred             hhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhH
Confidence            7654  579999999999999987765  589999999887 667887654  58999999998 4456665443  478


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      +.|++.+|....      .+..+  .++|+.|.++++.- ..++    ..+  .++|+.|++++|.+.            
T Consensus       307 ~~L~Ls~N~Lt~------LP~~l--~~sL~~L~Ls~N~L-t~LP----~~l--~~sL~~L~Ls~N~L~------------  359 (754)
T PRK15370        307 THLNVQSNSLTA------LPETL--PPGLKTLEAGENAL-TSLP----ASL--PPELQVLDVSKNQIT------------  359 (754)
T ss_pred             HHHHhcCCcccc------CCccc--cccceeccccCCcc-ccCC----hhh--cCcccEEECCCCCCC------------
Confidence            888888776542      11111  14566666666432 2121    111  256777777777621            


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCC-----CCCcc-cceEeccccc
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPP-----LGKLP-LEKLTLYNLK  368 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-----~~~l~-L~~L~l~~c~  368 (432)
                         .++..+  ++.|++|++++|....+|..+.  +.|+.|++++|.. ..+|.     .+.+| +..|++.+++
T Consensus       360 ---~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        360 ---VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ---cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence               111111  2467777777776666666543  3567777777643 34442     23346 6677776666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=3.7e-14  Score=144.36  Aligned_cols=256  Identities=24%  Similarity=0.256  Sum_probs=163.0

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      ..-..|+++.+.+..+|..+.  ++|+.|.+.+|.++.       +|.   ..++|++|++++         |.++.+|.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-------LP~---lp~~Lk~LdLs~---------N~LtsLP~  259 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-------LPA---LPPELRTLEVSG---------NQLTSLPV  259 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-------CCC---CCCCCcEEEecC---------CccCcccC
Confidence            345567888888888888765  478899998885432       332   257889999988         67777774


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                      .   .++|+.|++++|.+..+|...   .+|+.|++++|. +..+|.   ..++|+.|++++|. +..+|...   .+|+
T Consensus       260 l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~lp---~~L~  325 (788)
T PRK15387        260 L---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPALP---SELC  325 (788)
T ss_pred             c---ccccceeeccCCchhhhhhch---hhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCCc---cccc
Confidence            3   467888888888888777532   567888888887 667765   24678888888884 44455422   3466


Q ss_pred             cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465          221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK  300 (432)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  300 (432)
                      .|++.+|....       ++.+.  .+|+.|++++.. +...+.       ..++|+.|++++|.+.             
T Consensus       326 ~L~Ls~N~L~~-------LP~lp--~~Lq~LdLS~N~-Ls~LP~-------lp~~L~~L~Ls~N~L~-------------  375 (788)
T PRK15387        326 KLWAYNNQLTS-------LPTLP--SGLQELSVSDNQ-LASLPT-------LPSELYKLWAYNNRLT-------------  375 (788)
T ss_pred             ccccccCcccc-------ccccc--cccceEecCCCc-cCCCCC-------CCcccceehhhccccc-------------
Confidence            67766655442       11111  357777776622 222111       1245677777777621             


Q ss_pred             hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccC
Q 037465          301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG  379 (432)
Q Consensus       301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~  379 (432)
                        .++.   .+.+|+.|++++|....+|..   .++|+.|++++|. +..+|.+  .. |+.|++++|. ++.+|..+. 
T Consensus       376 --~LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~-  442 (788)
T PRK15387        376 --SLPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPML--PSGLLSLSVYRNQ-LTRLPESLI-  442 (788)
T ss_pred             --cCcc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcc--hhhhhhhhhccCc-ccccChHHh-
Confidence              1111   134677788877777666643   3577888888874 3445532  23 7777777766 777765433 


Q ss_pred             CCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465          380 IEESSEDDPSSSSSSSSELSIEGCPL  405 (432)
Q Consensus       380 ~~~~~~~~~~~~~~~L~~L~i~~cp~  405 (432)
                                 .+++|+.|+++++|-
T Consensus       443 -----------~L~~L~~LdLs~N~L  457 (788)
T PRK15387        443 -----------HLSSETTVNLEGNPL  457 (788)
T ss_pred             -----------hccCCCeEECCCCCC
Confidence                       366777777777753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=7.3e-17  Score=129.87  Aligned_cols=154  Identities=24%  Similarity=0.349  Sum_probs=136.1

Q ss_pred             cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccc
Q 037465           79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCI  158 (432)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l  158 (432)
                      .+.++++++.|.++.|++     +.. +|. +..+.+|++|++++         ++++++|.+++.++.|+.|+++-|++
T Consensus        28 gLf~~s~ITrLtLSHNKl-----~~v-ppn-ia~l~nlevln~~n---------nqie~lp~~issl~klr~lnvgmnrl   91 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKL-----TVV-PPN-IAELKNLEVLNLSN---------NQIEELPTSISSLPKLRILNVGMNRL   91 (264)
T ss_pred             cccchhhhhhhhcccCce-----eec-CCc-HHHhhhhhhhhccc---------chhhhcChhhhhchhhhheecchhhh
Confidence            346788999999999954     332 444 88999999999999         89999999999999999999999999


Q ss_pred             cccchhhhccCCccEEeccccccc-ccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCc
Q 037465          159 KRLPETLCELYNLQKLDIRWCRNL-RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTC  237 (432)
Q Consensus       159 ~~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~  237 (432)
                      ..+|..++.++.|+.||+.+|... ..+|..+..++.|+.|++++| ....+|..++++++|+.|.+.++....      
T Consensus        92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~------  164 (264)
T KOG0617|consen   92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS------  164 (264)
T ss_pred             hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh------
Confidence            999999999999999999988733 578999999999999999999 668899999999999999998887765      


Q ss_pred             CccccccCccCCceeeCC
Q 037465          238 RLESLKNLQLLRECGIEG  255 (432)
Q Consensus       238 ~~~~l~~l~~L~~L~l~~  255 (432)
                      .+..++.+++|+.|.+.+
T Consensus       165 lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  165 LPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             CcHHHHHHHHHHHHhccc
Confidence            788889999999999887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=4e-15  Score=140.37  Aligned_cols=149  Identities=17%  Similarity=0.120  Sum_probs=74.1

Q ss_pred             CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCC
Q 037465           76 LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSG  155 (432)
Q Consensus        76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~  155 (432)
                      ....+..+..|+.|+++++.++.... . .++..+...+.|+.|+++++....  -......++..+..+++|++|++++
T Consensus        15 ~~~~~~~l~~L~~l~l~~~~l~~~~~-~-~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~   90 (319)
T cd00116          15 ATELLPKLLCLQVLRLEGNTLGEEAA-K-ALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKGCGLQELDLSD   90 (319)
T ss_pred             hHHHHHHHhhccEEeecCCCCcHHHH-H-HHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhcCceeEEEccC
Confidence            34445556667777777774422111 1 133445566667777777631100  0011122344455666777777777


Q ss_pred             cccc-ccchhhhccCC---ccEEecccccccc----cCChhhhcc-cccceEEcCCCCccc----cCCccCCcccccccc
Q 037465          156 LCIK-RLPETLCELYN---LQKLDIRWCRNLR----ELPAGIGKL-MNMRSLLNDNTRSLK----YMPIGISKLTSLRTL  222 (432)
Q Consensus       156 ~~l~-~lp~~i~~l~~---L~~L~l~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L  222 (432)
                      |.+. ..+..+..+.+   |++|++++|....    .+...+..+ ++|+.|++++|....    .++..+..+++|++|
T Consensus        91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L  170 (319)
T cd00116          91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL  170 (319)
T ss_pred             CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence            7654 33344444444   7777777665321    122233444 666666666664332    122223344455555


Q ss_pred             cceEec
Q 037465          223 GKFVVG  228 (432)
Q Consensus       223 ~l~~~~  228 (432)
                      ++.++.
T Consensus       171 ~l~~n~  176 (319)
T cd00116         171 NLANNG  176 (319)
T ss_pred             ECcCCC
Confidence            554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.48  E-value=6.5e-15  Score=138.88  Aligned_cols=288  Identities=20%  Similarity=0.103  Sum_probs=169.3

Q ss_pred             EEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc-------c
Q 037465           89 LLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR-------L  161 (432)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-------l  161 (432)
                      |++.++.     +.+......+..+.+|++|++++|.. ++   .....++..+...+.|++|+++++.+..       +
T Consensus         3 l~L~~~~-----l~~~~~~~~~~~l~~L~~l~l~~~~l-~~---~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~   73 (319)
T cd00116           3 LSLKGEL-----LKTERATELLPKLLCLQVLRLEGNTL-GE---EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL   73 (319)
T ss_pred             cccccCc-----ccccchHHHHHHHhhccEEeecCCCC-cH---HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence            4555553     33332445567777788888888421 00   0113355566677778888888776542       3


Q ss_pred             chhhhccCCccEEecccccccccCChhhhcccc---cceEEcCCCCccc----cCCccCCcc-cccccccceEecccccC
Q 037465          162 PETLCELYNLQKLDIRWCRNLRELPAGIGKLMN---MRSLLNDNTRSLK----YMPIGISKL-TSLRTLGKFVVGGGVDG  233 (432)
Q Consensus       162 p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~---L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~~~~~  233 (432)
                      +..+..+++|+.|++++|......+..+..+..   |++|++++|....    .+...+..+ ++|++|++.++..... 
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-  152 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-  152 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-
Confidence            345667778888888888754455555555555   8888888885542    222334455 7788888887765520 


Q ss_pred             CCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCC
Q 037465          234 SSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVN  313 (432)
Q Consensus       234 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (432)
                      ........+..+++|+.|++.++.-...........+...++|++|++++|.+.+.          ....+...+..+++
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~----------~~~~l~~~~~~~~~  222 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE----------GASALAETLASLKS  222 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH----------HHHHHHHHhcccCC
Confidence            00112334556677888888774332221122334455567888888888873211          23445556677788


Q ss_pred             CcEEEEeeeCCCC-CChhhh-----ccCCCcEEEEeCCCCCC----CC-CCCCCcc-cceEeccccccccccCccccCCC
Q 037465          314 VEELWIVYYGGNI-FPKWLT-----SLTNLRNLYLSSCFNCE----HL-PPLGKLP-LEKLTLYNLKSVKRVGNEFLGIE  381 (432)
Q Consensus       314 L~~L~l~~~~~~~-~~~~l~-----~l~~L~~L~l~~~~~~~----~l-~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~  381 (432)
                      |++|++++|.... ....+.     ..++|++|++++|....    .+ ..+..++ |+++++++|. +...+.......
T Consensus       223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~  301 (319)
T cd00116         223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAES  301 (319)
T ss_pred             CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHH
Confidence            8888888876543 111122     23788888888886541    11 1234557 8888888877 554433222111


Q ss_pred             CCCCCCCCCCC-CCcceEEEeCCc
Q 037465          382 ESSEDDPSSSS-SSSSELSIEGCP  404 (432)
Q Consensus       382 ~~~~~~~~~~~-~~L~~L~i~~cp  404 (432)
                      .       ..+ +.|++++|.+.|
T Consensus       302 ~-------~~~~~~~~~~~~~~~~  318 (319)
T cd00116         302 L-------LEPGNELESLWVKDDS  318 (319)
T ss_pred             H-------hhcCCchhhcccCCCC
Confidence            0       134 678888877654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=1.1e-13  Score=141.74  Aligned_cols=227  Identities=20%  Similarity=0.207  Sum_probs=168.0

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ++.++.|.+.++.+..+|..+.  ++|++|++++|.++.       +|..+  ..+|+.|++++         +.+..+|
T Consensus       198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-------LP~~l--~~~L~~L~Ls~---------N~L~~LP  257 (754)
T PRK15370        198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-------IPATL--PDTIQEMELSI---------NRITELP  257 (754)
T ss_pred             ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-------CChhh--hccccEEECcC---------CccCcCC
Confidence            5679999999999999888764  589999999996532       33323  24799999999         6788888


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ..+.  .+|++|++++|.+..+|..+.  .+|++|++++|. +..+|..+.  ++|+.|++++|. +..+|..+  .++|
T Consensus       258 ~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL  327 (754)
T PRK15370        258 ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGL  327 (754)
T ss_pred             hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccc
Confidence            7764  589999999999999987664  589999999997 777886553  479999999984 44566544  3689


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      +.|++.+|....      .+..+.  ++|+.|+++++. +...+.    .+  .++|+.|++++|.+..           
T Consensus       328 ~~L~Ls~N~Lt~------LP~~l~--~sL~~L~Ls~N~-L~~LP~----~l--p~~L~~LdLs~N~Lt~-----------  381 (754)
T PRK15370        328 KTLEAGENALTS------LPASLP--PELQVLDVSKNQ-ITVLPE----TL--PPTITTLDVSRNALTN-----------  381 (754)
T ss_pred             eeccccCCcccc------CChhhc--CcccEEECCCCC-CCcCCh----hh--cCCcCEEECCCCcCCC-----------
Confidence            999998876553      222232  578999998753 222222    12  2589999999998432           


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhh----ccCCCcEEEEeCCCCC
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLT----SLTNLRNLYLSSCFNC  348 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~----~l~~L~~L~l~~~~~~  348 (432)
                          ++..+  ...|+.|++++|....+|..+.    .++++..|++.+|...
T Consensus       382 ----LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        382 ----LPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ----CCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                22211  1368889999998888776654    4689999999999754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=2.7e-14  Score=129.39  Aligned_cols=263  Identities=19%  Similarity=0.164  Sum_probs=164.2

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~  144 (432)
                      +.-.+.++.++|..+.  +.-..+.+..|.|      ..+++.+|+.+++||.|||+.         |.+..| |..|..
T Consensus        51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I------~~iP~~aF~~l~~LRrLdLS~---------N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP--PETVEIRLDQNQI------SSIPPGAFKTLHRLRRLDLSK---------NNISFIAPDAFKG  113 (498)
T ss_pred             EEccCCCcccCcccCC--CcceEEEeccCCc------ccCChhhccchhhhceecccc---------cchhhcChHhhhh
Confidence            3445566666666543  3456788888844      334677788888888888888         778887 778888


Q ss_pred             CccccEEEeCC-ccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCc-cCCccccccc
Q 037465          145 LIHLKYLNLSG-LCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPI-GISKLTSLRT  221 (432)
Q Consensus       145 l~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~  221 (432)
                      ++.|..|-+.+ |+|+.+|. .+++|..|+.|.+.-|+......+.+..+++|..|.+.+| ....++. .+..+.+++.
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~t  192 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKT  192 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccch
Confidence            88887777766 66888885 6788888888888887744444555778888888888888 4455554 5667777777


Q ss_pred             ccceEecccccCCCCcCcc-----------ccccCcc----------------------CCce--eeCCCCCCCCchhhh
Q 037465          222 LGKFVVGGGVDGSSTCRLE-----------SLKNLQL----------------------LREC--GIEGLGNVSHLDEAE  266 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~-----------~l~~l~~----------------------L~~L--~l~~~~~~~~~~~~~  266 (432)
                      +.+..+....    .+..+           .++..+.                      ++.+  ....-.....  ..-
T Consensus       193 lhlA~np~ic----dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~--~cP  266 (498)
T KOG4237|consen  193 LHLAQNPFIC----DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS--ICP  266 (498)
T ss_pred             HhhhcCcccc----ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC--cCh
Confidence            7776665322    11111           1111110                      0000  0000000000  011


Q ss_pred             hcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCC
Q 037465          267 RLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSC  345 (432)
Q Consensus       267 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~  345 (432)
                      ...++.+++|+.|++++|.              ....-..++.....++.|.|..|....+... +.++..|+.|++.+|
T Consensus       267 ~~cf~~L~~L~~lnlsnN~--------------i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N  332 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNK--------------ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN  332 (498)
T ss_pred             HHHHhhcccceEeccCCCc--------------cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence            2236777888888888887              3344445666677777777777766554333 337778888888888


Q ss_pred             CCCCCCC-CCCCcc-cceEeccc
Q 037465          346 FNCEHLP-PLGKLP-LEKLTLYN  366 (432)
Q Consensus       346 ~~~~~l~-~~~~l~-L~~L~l~~  366 (432)
                      +.....| .+..+. |.+|.+-.
T Consensus       333 ~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  333 QITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             eeEEEecccccccceeeeeehcc
Confidence            6555444 355555 66666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=1.2e-12  Score=133.39  Aligned_cols=234  Identities=21%  Similarity=0.126  Sum_probs=161.5

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.|.+..+.+..+|..   .++|++|++++|.++.       +|.   ..++|+.|++++         +.+..+|
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-------LP~---lp~sL~~L~Ls~---------N~L~~Lp  278 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-------LPV---LPPGLLELSIFS---------NPLTHLP  278 (788)
T ss_pred             hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-------ccC---cccccceeeccC---------Cchhhhh
Confidence            45789999999999988753   5789999999996532       332   246889999999         6677777


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ..   ..+|+.|++++|.++.+|..   .++|+.|++++|. +..+|..   ..+|+.|++++|. +..+|..   ..+|
T Consensus       279 ~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~L  344 (788)
T PRK15387        279 AL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGL  344 (788)
T ss_pred             hc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---cccc
Confidence            53   35788999999999988853   4789999999987 6667642   2357788888884 4456642   2478


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      +.|++++|....      .+..   ..+|+.|+++... +..++    .   ...+|+.|++++|.+.            
T Consensus       345 q~LdLS~N~Ls~------LP~l---p~~L~~L~Ls~N~-L~~LP----~---l~~~L~~LdLs~N~Lt------------  395 (788)
T PRK15387        345 QELSVSDNQLAS------LPTL---PSELYKLWAYNNR-LTSLP----A---LPSGLKELIVSGNRLT------------  395 (788)
T ss_pred             ceEecCCCccCC------CCCC---Ccccceehhhccc-cccCc----c---cccccceEEecCCccc------------
Confidence            889888876653      1111   1345555554421 12211    1   1246888999888731            


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~  368 (432)
                         .++.   .+++|+.|++++|....+|..   +.+|+.|++++|.. +.+| .+.+++ |+.|++++|+
T Consensus       396 ---~LP~---l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        396 ---SLPV---LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             ---CCCC---cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence               1111   235788899988888777753   35678888888854 4566 467788 9999998887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.35  E-value=6e-13  Score=138.38  Aligned_cols=288  Identities=24%  Similarity=0.274  Sum_probs=194.7

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-ccCCccccEEEeCCcc-c
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-VGKLIHLKYLNLSGLC-I  158 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~-l  158 (432)
                      .+....|...+.++.+..       .+. -..++.|++|-+..+.       ..+..++.. |..++.|++|++++|. +
T Consensus       520 ~~~~~~rr~s~~~~~~~~-------~~~-~~~~~~L~tLll~~n~-------~~l~~is~~ff~~m~~LrVLDLs~~~~l  584 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-------IAG-SSENPKLRTLLLQRNS-------DWLLEISGEFFRSLPLLRVLDLSGNSSL  584 (889)
T ss_pred             cchhheeEEEEeccchhh-------ccC-CCCCCccceEEEeecc-------hhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence            455678888888885311       222 3456689999988831       025666544 6779999999999988 8


Q ss_pred             cccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcC
Q 037465          159 KRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCR  238 (432)
Q Consensus       159 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~  238 (432)
                      ..+|.+|+.|.+||+|+++++. +..+|..++++..|.+|++..+.....+|.....+++|++|.+.......   ....
T Consensus       585 ~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~  660 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLL  660 (889)
T ss_pred             CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhh
Confidence            8999999999999999999998 88999999999999999999998777777767779999999988775221   2445


Q ss_pred             ccccccCccCCceeeCCCCCCCCchhhhhcccccccCCc----eEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCC
Q 037465          239 LESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLL----CLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNV  314 (432)
Q Consensus       239 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  314 (432)
                      ...+.++.+|+.+.+.....      .....+..+..|.    .+.+.++               ........+..+.+|
T Consensus       661 l~el~~Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~---------------~~~~~~~~~~~l~~L  719 (889)
T KOG4658|consen  661 LKELENLEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGC---------------SKRTLISSLGSLGNL  719 (889)
T ss_pred             HHhhhcccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhccc---------------ccceeecccccccCc
Confidence            66667777777777644222      0111112222222    2222222               234455677888999


Q ss_pred             cEEEEeeeCCCCCC-hhhh-----c-cCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCC
Q 037465          315 EELWIVYYGGNIFP-KWLT-----S-LTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSED  386 (432)
Q Consensus       315 ~~L~l~~~~~~~~~-~~l~-----~-l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~  386 (432)
                      +.|.+.+|...... .|..     . ++++..+.+.+|.....+.+..-.| |++|++..|..++++............ 
T Consensus       720 ~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~-  798 (889)
T KOG4658|consen  720 EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE-  798 (889)
T ss_pred             ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc-
Confidence            99999998886422 2211     2 6778888888887777776544456 999999999988888654332211100 


Q ss_pred             CCCCCCCCcceE-EEeCCccccccc
Q 037465          387 DPSSSSSSSSEL-SIEGCPLLENRY  410 (432)
Q Consensus       387 ~~~~~~~~L~~L-~i~~cp~L~~~~  410 (432)
                       -...|++++.+ .+.+-+.+++++
T Consensus       799 -~i~~f~~~~~l~~~~~l~~l~~i~  822 (889)
T KOG4658|consen  799 -LILPFNKLEGLRMLCSLGGLPQLY  822 (889)
T ss_pred             -EEecccccccceeeecCCCCceeE
Confidence             00135555555 355555555553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=2.9e-13  Score=122.87  Aligned_cols=256  Identities=20%  Similarity=0.208  Sum_probs=179.6

Q ss_pred             cCCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           59 FGGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        59 ~~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      .+.....+.+..+++..+|. +|+.+++||.|+++.|.|     +. +-|+.|.+++.|..|-+.++        +.+++
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I-----s~-I~p~AF~GL~~l~~Lvlyg~--------NkI~~  130 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI-----SF-IAPDAFKGLASLLSLVLYGN--------NKITD  130 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccch-----hh-cChHhhhhhHhhhHHHhhcC--------Cchhh
Confidence            36678889999999999876 789999999999999954     33 35667999999988877775        78999


Q ss_pred             cCc-cccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc-------
Q 037465          138 IPE-NVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK-------  207 (432)
Q Consensus       138 lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-------  207 (432)
                      +|. .|++|..|+.|.+.-|.+..++ ..+..+++|..|.+.+|. +..++. .+..+..++.+.+..++...       
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence            976 5788999999999999888665 478899999999999988 777766 56678888888777665211       


Q ss_pred             -----cCCccCCcccccccccceEecccc---------------------cCCCCcCccccccCccCCceeeCCCCCCCC
Q 037465          208 -----YMPIGISKLTSLRTLGKFVVGGGV---------------------DGSSTCRLESLKNLQLLRECGIEGLGNVSH  261 (432)
Q Consensus       208 -----~~p~~l~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  261 (432)
                           ..|..++...-..-..+.+.....                     .....+....+.++++|+.+++++    ..
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn----N~  285 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN----NK  285 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC----Cc
Confidence                 111111111100000000000000                     001122334478899999999988    33


Q ss_pred             chhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEE
Q 037465          262 LDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNL  340 (432)
Q Consensus       262 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L  340 (432)
                      +.......+....++++|.+..|.              ...--...+..+..|+.|+|++|..+.+ |..+..+..|..|
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~--------------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNK--------------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcch--------------HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            333445667788899999999988              2222334567788999999999988764 5555578889999


Q ss_pred             EEeCCCC
Q 037465          341 YLSSCFN  347 (432)
Q Consensus       341 ~l~~~~~  347 (432)
                      ++-.|..
T Consensus       352 ~l~~Np~  358 (498)
T KOG4237|consen  352 NLLSNPF  358 (498)
T ss_pred             ehccCcc
Confidence            8877654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.09  E-value=1.4e-12  Score=119.28  Aligned_cols=89  Identities=20%  Similarity=0.141  Sum_probs=47.7

Q ss_pred             CCCCCcEEEEeeeCCCC---CChhhhccCCCcEEEEeCCCCCCCC--CC----CCCcc-cceEeccccccccccCccccC
Q 037465          310 PPVNVEELWIVYYGGNI---FPKWLTSLTNLRNLYLSSCFNCEHL--PP----LGKLP-LEKLTLYNLKSVKRVGNEFLG  379 (432)
Q Consensus       310 ~~~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~l--~~----~~~l~-L~~L~l~~c~~l~~~~~~~~~  379 (432)
                      .++.|+.+++..+....   +...-.++|.|+.|.+++|..+++.  ..    -..+. |+.+.+++|+.+++.-.+.+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            34555555555543322   1111126667777777766555433  11    12344 677777777766655444442


Q ss_pred             CCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          380 IEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       380 ~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                                 .+++|+.+++.+|-..+.-
T Consensus       424 -----------~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  424 -----------ICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             -----------hCcccceeeeechhhhhhh
Confidence                       3667777777776655544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=7e-12  Score=118.97  Aligned_cols=94  Identities=31%  Similarity=0.482  Sum_probs=47.3

Q ss_pred             CcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCcc
Q 037465          133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIG  212 (432)
Q Consensus       133 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~  212 (432)
                      +....+|..+..+..|..+.+..|.+..+|..+..+..|.+|+++.|+ +..+|..++.| -|+.|.+++| .++.+|..
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sNN-kl~~lp~~  161 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSNN-KLTSLPEE  161 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEecC-ccccCCcc
Confidence            444455555555555555555555555555555555555555555554 44455444433 2455555444 44445555


Q ss_pred             CCcccccccccceEecc
Q 037465          213 ISKLTSLRTLGKFVVGG  229 (432)
Q Consensus       213 l~~l~~L~~L~l~~~~~  229 (432)
                      ++.+..|..|+.+.|..
T Consensus       162 ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             cccchhHHHhhhhhhhh
Confidence            55555555555554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=1.1e-11  Score=111.09  Aligned_cols=260  Identities=22%  Similarity=0.173  Sum_probs=124.5

Q ss_pred             cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccc-------cCCccccEE
Q 037465           79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-------GKLIHLKYL  151 (432)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~-------~~l~~L~~L  151 (432)
                      ....+..++.+++++|.+.. ..-.. +...+.+.++|+..+++..  |+|   .....+|+.+       ...++|++|
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~-EAa~~-i~~~L~~~~~L~~v~~sd~--ftG---R~~~Ei~e~L~~l~~aL~~~~~L~~l   97 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGT-EAARA-IAKVLASKKELREVNLSDM--FTG---RLKDEIPEALKMLSKALLGCPKLQKL   97 (382)
T ss_pred             HhcccCceEEEeccCCchhH-HHHHH-HHHHHhhcccceeeehHhh--hcC---CcHHHHHHHHHHHHHHHhcCCceeEe
Confidence            34556677778888875422 11111 3344666677777777762  222   3333444332       233455555


Q ss_pred             EeCCcccc--c---cchhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccce
Q 037465          152 NLSGLCIK--R---LPETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF  225 (432)
Q Consensus       152 ~L~~~~l~--~---lp~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~  225 (432)
                      +||.|.+.  .   +-.-+..+..|++|.+.+|. ++..-. .+++  .|.+|.         ....++.-+.|+++...
T Consensus        98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICG  165 (382)
T ss_pred             eccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEee
Confidence            55555533  1   11223444555555555554 221110 0100  000000         00112334455655555


Q ss_pred             EecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhh
Q 037465          226 VVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL  305 (432)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  305 (432)
                      .|.....++ ......+...+.|+.+.+......+.........+..+++|+.|++.+|.+          .......+.
T Consensus       166 rNrlen~ga-~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf----------t~egs~~La  234 (382)
T KOG1909|consen  166 RNRLENGGA-TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF----------TLEGSVALA  234 (382)
T ss_pred             ccccccccH-HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh----------hhHHHHHHH
Confidence            554432111 112223344455666555543332332334555666677777777766652          122334455


Q ss_pred             hcCCCCCCCcEEEEeeeCCCC-----CChhhh-ccCCCcEEEEeCCCCCCCC-----CCCCCcc-cceEeccccc
Q 037465          306 KALQPPVNVEELWIVYYGGNI-----FPKWLT-SLTNLRNLYLSSCFNCEHL-----PPLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       306 ~~l~~~~~L~~L~l~~~~~~~-----~~~~l~-~l~~L~~L~l~~~~~~~~l-----~~~~~l~-L~~L~l~~c~  368 (432)
                      ..+..+++|+.+++++|....     +...+. ..|+|+.|.+.+|.....-     ..+...| |+.|+|++|.
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            566666677777777665543     222222 5677777777777443311     0234466 7777777776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.01  E-value=1.4e-11  Score=112.84  Aligned_cols=288  Identities=20%  Similarity=0.111  Sum_probs=154.1

Q ss_pred             CceEEEEeecCCCCC---CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           61 GKVRHLGLNFEGGAP---LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      ..++.+++.+..-..   +-..-.+|+++..|.+.+|.    .+++....+.-..|++|++|++..|..+|+   ..++.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~---~~Lk~  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITD---VSLKY  210 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHH---HHHHH
Confidence            455666666553322   22233567777777777775    555555555556677777777777633222   22221


Q ss_pred             cCccccCCccccEEEeCCcc-cc--ccchhhhccCCccEEecccccccc--cCChhhhcccccceEEcCCCCccccCCcc
Q 037465          138 IPENVGKLIHLKYLNLSGLC-IK--RLPETLCELYNLQKLDIRWCRNLR--ELPAGIGKLMNMRSLLNDNTRSLKYMPIG  212 (432)
Q Consensus       138 lp~~~~~l~~L~~L~L~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~  212 (432)
                      +   ...+++|+||+++||. +.  .+-.....+++++.+.+++|...+  .+...-+.+..+..+++..|..++....+
T Consensus       211 l---a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  211 L---AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             H---HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence            2   2346777777777776 43  233344555666666666654221  11111123444555565566443332211


Q ss_pred             --CCcccccccccceEecccccCCCCcCccccc-cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCC
Q 037465          213 --ISKLTSLRTLGKFVVGGGVDGSSTCRLESLK-NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDG  289 (432)
Q Consensus       213 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  289 (432)
                        -..+..|+.+....+...+    ......++ +..+|+.+-+.+|....+.  .+...-.++++|+.+++..+..   
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~----d~~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~---  358 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDIT----DEVLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGL---  358 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCc----hHHHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhcccccce---
Confidence              1245566777666665543    33344443 4566777777776654432  2222234566777777766651   


Q ss_pred             chHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC------hhhhccCCCcEEEEeCCCCCCC--CCCCCCcc-cc
Q 037465          290 EDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP------KWLTSLTNLRNLYLSSCFNCEH--LPPLGKLP-LE  360 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------~~l~~l~~L~~L~l~~~~~~~~--l~~~~~l~-L~  360 (432)
                               ....++...-..++.|+.+.+++|....-.      ..-..+..|..|.+++|+.+++  +..+...+ ||
T Consensus       359 ---------~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le  429 (483)
T KOG4341|consen  359 ---------ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE  429 (483)
T ss_pred             ---------ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence                     022234444556677777777765543311      1112456677777777766552  33455566 77


Q ss_pred             eEeccccccccccCcc
Q 037465          361 KLTLYNLKSVKRVGNE  376 (432)
Q Consensus       361 ~L~l~~c~~l~~~~~~  376 (432)
                      ++++.+|+.++.-+..
T Consensus       430 ri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  430 RIELIDCQDVTKEAIS  445 (483)
T ss_pred             eeeeechhhhhhhhhH
Confidence            7777777766666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=1.4e-10  Score=104.16  Aligned_cols=254  Identities=20%  Similarity=0.127  Sum_probs=161.1

Q ss_pred             hhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEEEeCCcccc----ccchh-------hhccCCcc
Q 037465          109 LFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYLNLSGLCIK----RLPET-------LCELYNLQ  172 (432)
Q Consensus       109 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~-------i~~l~~L~  172 (432)
                      ....+..+..+++++|         .++.     +...+.+.+.|+..+++.-...    .+|+.       +..+++|+
T Consensus        25 ~~~~~~s~~~l~lsgn---------t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~   95 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGN---------TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ   95 (382)
T ss_pred             HhcccCceEEEeccCC---------chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence            3667788888888884         4432     4455666778888888754322    34433       34556788


Q ss_pred             EEecccccccccCChh----hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccC
Q 037465          173 KLDIRWCRNLRELPAG----IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL  248 (432)
Q Consensus       173 ~L~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L  248 (432)
                      +|+|++|-+-..-+..    +.+++.|++|++.+|.....-...++.  .|.+|.              .....+.-+.|
T Consensus        96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------------~~kk~~~~~~L  159 (382)
T KOG1909|consen   96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------------VNKKAASKPKL  159 (382)
T ss_pred             EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------------HHhccCCCcce
Confidence            8888887754444433    446677777777777332211111111  233332              11122334678


Q ss_pred             CceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC--
Q 037465          249 RECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI--  326 (432)
Q Consensus       249 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--  326 (432)
                      |++...+..--..........+...+.|+.+.+..|.+..          .........+..+++|+.|++.+|..+.  
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~----------eG~~al~eal~~~~~LevLdl~DNtft~eg  229 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP----------EGVTALAEALEHCPHLEVLDLRDNTFTLEG  229 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEecccccC----------chhHHHHHHHHhCCcceeeecccchhhhHH
Confidence            8887776433333445666778888999999999988321          1234566778899999999999987654  


Q ss_pred             ---CChhhhccCCCcEEEEeCCCCCCCCC-----C-CCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcc
Q 037465          327 ---FPKWLTSLTNLRNLYLSSCFNCEHLP-----P-LGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSS  396 (432)
Q Consensus       327 ---~~~~l~~l~~L~~L~l~~~~~~~~l~-----~-~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~  396 (432)
                         +...++.+|+|+.|++++|.....=.     . -...| |+.|.+.+|. ++.-....+..       +....|.|+
T Consensus       230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~-------~~~ek~dL~  301 (382)
T KOG1909|consen  230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAA-------CMAEKPDLE  301 (382)
T ss_pred             HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHH-------HHhcchhhH
Confidence               34455578999999999996444211     1 23478 9999999998 55544332222       112478999


Q ss_pred             eEEEeCCcc
Q 037465          397 ELSIEGCPL  405 (432)
Q Consensus       397 ~L~i~~cp~  405 (432)
                      .|.+.+|.-
T Consensus       302 kLnLngN~l  310 (382)
T KOG1909|consen  302 KLNLNGNRL  310 (382)
T ss_pred             HhcCCcccc
Confidence            999999865

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.2e-11  Score=109.27  Aligned_cols=193  Identities=16%  Similarity=0.143  Sum_probs=107.1

Q ss_pred             CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc---cCccccCCccccEEE
Q 037465           76 LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE---IPENVGKLIHLKYLN  152 (432)
Q Consensus        76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~---lp~~~~~l~~L~~L~  152 (432)
                      +...-.++++|+...+.++++..   .+  .......|++++.|||+.         +.+..   +...+..|++|+.|+
T Consensus       113 i~akQsn~kkL~~IsLdn~~V~~---~~--~~~~~k~~~~v~~LdLS~---------NL~~nw~~v~~i~eqLp~Le~LN  178 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYRVED---AG--IEEYSKILPNVRDLDLSR---------NLFHNWFPVLKIAEQLPSLENLN  178 (505)
T ss_pred             HHHHhhhHHhhhheeecCccccc---cc--hhhhhhhCCcceeecchh---------hhHHhHHHHHHHHHhcccchhcc
Confidence            34445667777777777775311   11  113456677777777777         44333   233345677777777


Q ss_pred             eCCccccccch--hhhccCCccEEeccccccc-ccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecc
Q 037465          153 LSGLCIKRLPE--TLCELYNLQKLDIRWCRNL-RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGG  229 (432)
Q Consensus       153 L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~  229 (432)
                      ++.|.+.....  .-..+++|+.|.+++|... ..+...+..+++|+.|++..|............++.|++|+++++..
T Consensus       179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            77777542211  1235667777777777733 22333344677777777777743222222234566777777777766


Q ss_pred             cccCCCCcCccccccCccCCceeeCCCC--CCCCchhhhhcccccccCCceEEEeeccc
Q 037465          230 GVDGSSTCRLESLKNLQLLRECGIEGLG--NVSHLDEAERLQLYNQQNLLCLHLEFGRV  286 (432)
Q Consensus       230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  286 (432)
                      ..    .......+.++.|+.|.++.+.  .+...+.........+++|+.|.+..|++
T Consensus       259 i~----~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  259 ID----FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cc----cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            64    3344555666777766655422  12111111112234556677777766663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=1e-09  Score=92.27  Aligned_cols=131  Identities=27%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhc-cCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFS-KLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK  159 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~  159 (432)
                      -++.+++.|++.+|.++.       +.. +. .+.+|+.|++++         +.++.+. .+..+++|++|++++|.|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~-------Ie~-L~~~l~~L~~L~Ls~---------N~I~~l~-~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-------IEN-LGATLDKLEVLDLSN---------NQITKLE-GLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ---------------------------S---TT-TT--EEE-TT---------S--S--T-T----TT--EEE--SS---
T ss_pred             cccccccccccccccccc-------ccc-hhhhhcCCCEEECCC---------CCCcccc-CccChhhhhhcccCCCCCC
Confidence            455567888888886532       222 33 567888888888         6677774 5677888888888888888


Q ss_pred             ccchhh-hccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccC---CccCCcccccccccceEeccc
Q 037465          160 RLPETL-CELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYM---PIGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       160 ~lp~~i-~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~---p~~l~~l~~L~~L~l~~~~~~  230 (432)
                      ++++.+ ..+++|++|++++|. +..+-  ..+..+++|+.|++.+|+....-   ...+..+++|+.||-......
T Consensus        78 ~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~  153 (175)
T PF14580_consen   78 SISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE  153 (175)
T ss_dssp             S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred             ccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence            886555 357888888888887 43321  34667888888888888665431   123567888888887665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=6.3e-10  Score=93.51  Aligned_cols=101  Identities=28%  Similarity=0.331  Sum_probs=22.9

Q ss_pred             ceEEEEeecCCCCCCCcccc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           62 KVRHLGLNFEGGAPLPMSFF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      +.+.|++.++.+..+. .+. .+.+|+.|++++|.++.       +.. +..++.|++|++++         |.++.+++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-------l~~-l~~L~~L~~L~L~~---------N~I~~i~~   81 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-------LEG-LPGLPRLKTLDLSN---------NRISSISE   81 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---------TT-----TT--EEE--S---------S---S-CH
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCcc-------ccC-ccChhhhhhcccCC---------CCCCcccc
Confidence            3445555555554432 222 34455555555553321       222 44455555555555         44444433


Q ss_pred             cc-cCCccccEEEeCCccccccc--hhhhccCCccEEeccccc
Q 037465          141 NV-GKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       141 ~~-~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~  180 (432)
                      .+ ..+++|+.|++++|.|..+.  ..+..+++|+.|++.+|+
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            33 23455555555555544222  234445555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=3.7e-11  Score=114.18  Aligned_cols=148  Identities=26%  Similarity=0.375  Sum_probs=113.5

Q ss_pred             EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcccc
Q 037465           64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG  143 (432)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~  143 (432)
                      ..+.++.+.+..+|.++.++..|.+|+++.|.++.       +|..++.|+ |++|.+++         +.++.+|..++
T Consensus       101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~-------lp~~lC~lp-Lkvli~sN---------Nkl~~lp~~ig  163 (722)
T KOG0532|consen  101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH-------LPDGLCDLP-LKVLIVSN---------NKLTSLPEEIG  163 (722)
T ss_pred             HHHHHHhccceecchhhhhhhHHHHhhhccchhhc-------CChhhhcCc-ceeEEEec---------CccccCCcccc
Confidence            33445555566677777777778888887775321       344344443 68888888         77888888888


Q ss_pred             CCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG  223 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  223 (432)
                      .+..|..|+.+.|.+..+|..++.+.+|+.|.++.|. +..+|..+. .-.|..||++.| .+.++|..|.+|+.|++|.
T Consensus       164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC-ceeecchhhhhhhhheeee
Confidence            8888888888888888888888888888888888887 778888887 446888888887 6778888888999999999


Q ss_pred             ceEecccc
Q 037465          224 KFVVGGGV  231 (432)
Q Consensus       224 l~~~~~~~  231 (432)
                      +.+|....
T Consensus       241 LenNPLqS  248 (722)
T KOG0532|consen  241 LENNPLQS  248 (722)
T ss_pred             eccCCCCC
Confidence            88887765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=5.2e-10  Score=103.29  Aligned_cols=208  Identities=16%  Similarity=0.082  Sum_probs=142.7

Q ss_pred             cCCceEEEEeecCCCCCCC--ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465           59 FGGKVRHLGLNFEGGAPLP--MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT  136 (432)
Q Consensus        59 ~~~~i~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  136 (432)
                      ..++++.+++........+  .....|++++.|+++.|-+.+    ...+..+...+|+|+.|+++.|         .+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~Le~LNls~N---------rl~  185 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPSLENLNLSSN---------RLS  185 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhcccchhcccccc---------ccc
Confidence            4678888999998887755  367889999999999996533    2224455788999999999994         443


Q ss_pred             ccCcc--ccCCccccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC--
Q 037465          137 EIPEN--VGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP--  210 (432)
Q Consensus       137 ~lp~~--~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p--  210 (432)
                      ...++  -..+++|+.|.++.|.+.  .+-...-.+++|+.|++.+|..+..-.....-+..|++|++++|+... .+  
T Consensus       186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~  264 (505)
T KOG3207|consen  186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQG  264 (505)
T ss_pred             CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccc
Confidence            33222  235789999999999976  444455678999999999995333222233456789999999995544 34  


Q ss_pred             ccCCcccccccccceEecccccCCCCc-CccccccCccCCceeeCCCCC--CCCchhhhhcccccccCCceEEEeecc
Q 037465          211 IGISKLTSLRTLGKFVVGGGVDGSSTC-RLESLKNLQLLRECGIEGLGN--VSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       211 ~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      ..++.++.|+.|.+..+.......... .......+++|+.|.+.....  +..     ...+..+++|+.|.+..+.
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-----l~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS-----LNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc-----cchhhccchhhhhhccccc
Confidence            447889999999998887764211111 112245678899988876332  211     2344556777777777666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=6.7e-09  Score=100.94  Aligned_cols=154  Identities=30%  Similarity=0.319  Sum_probs=109.4

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCc-cccEEEeCCccccccchhhhccCCccEEecccccccccCChh
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLI-HLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG  188 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~  188 (432)
                      +...+.++.|++.+         +.+..+|.....+. +|+.|+++++.+..+|..+..+++|+.|++++|. +..+|..
T Consensus       112 ~~~~~~l~~L~l~~---------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~  181 (394)
T COG4886         112 LLELTNLTSLDLDN---------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL  181 (394)
T ss_pred             hhcccceeEEecCC---------cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence            55567899999988         78888888888775 9999999999999988888999999999999988 8888877


Q ss_pred             hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhc
Q 037465          189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL  268 (432)
Q Consensus       189 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  268 (432)
                      .+.+++|+.|++++| ....+|..++....|+++.+..+....      .+..+.++.++..+.+..-.. ..    ...
T Consensus       182 ~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~------~~~~~~~~~~l~~l~l~~n~~-~~----~~~  249 (394)
T COG4886         182 LSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE------LLSSLSNLKNLSGLELSNNKL-ED----LPE  249 (394)
T ss_pred             hhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee------cchhhhhcccccccccCCcee-ee----ccc
Confidence            768889999999998 566777766667778888888775322      444455555555554333111 00    023


Q ss_pred             ccccccCCceEEEeecc
Q 037465          269 QLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       269 ~l~~~~~L~~L~l~~~~  285 (432)
                      .+..+++++.|++++|.
T Consensus       250 ~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         250 SIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hhccccccceecccccc
Confidence            34444555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.76  E-value=7.1e-09  Score=100.77  Aligned_cols=192  Identities=27%  Similarity=0.280  Sum_probs=137.6

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCC-cceEEEeCCCCCCCCCCCCcccccCcccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLA-CLRALVISQSSSFSHPGPNLITEIPENVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~lp~~~~  143 (432)
                      .+....+........+...+.++.|++.++.+..       ++....... +|+.|++++         +.+..+|..++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-------i~~~~~~~~~nL~~L~l~~---------N~i~~l~~~~~  160 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-------IPPLIGLLKSNLKELDLSD---------NKIESLPSPLR  160 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccccc-------Cccccccchhhcccccccc---------cchhhhhhhhh
Confidence            3555555543334455566788889988885432       444355553 899999998         78888887888


Q ss_pred             CCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG  223 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  223 (432)
                      .+++|+.|++++|.+..+|...+.+++|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+..+.++..+.
T Consensus       161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~  238 (394)
T COG4886         161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE  238 (394)
T ss_pred             ccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence            8999999999999999998777788999999999888 88888777777779999888884 334455567777777777


Q ss_pred             ceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccc
Q 037465          224 KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRV  286 (432)
Q Consensus       224 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  286 (432)
                      +..+....      .+..++.++.++.+++..... ...     ..+....+++.|+++++.+
T Consensus       239 l~~n~~~~------~~~~~~~l~~l~~L~~s~n~i-~~i-----~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         239 LSNNKLED------LPESIGNLSNLETLDLSNNQI-SSI-----SSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cCCceeee------ccchhccccccceeccccccc-ccc-----ccccccCccCEEeccCccc
Confidence            65555432      255666777788888776322 221     1267788889999988874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=7.7e-09  Score=91.27  Aligned_cols=132  Identities=22%  Similarity=0.026  Sum_probs=81.0

Q ss_pred             cccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH
Q 037465          215 KLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER  294 (432)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  294 (432)
                      ..+.|++++++++.+..      ...+..-++.++.|+++...- .     ....+..+++|+.|++++|.         
T Consensus       282 TWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS~N~i-~-----~v~nLa~L~~L~~LDLS~N~---------  340 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ------IDESVKLAPKLRRLILSQNRI-R-----TVQNLAELPQLQLLDLSGNL---------  340 (490)
T ss_pred             hHhhhhhccccccchhh------hhhhhhhccceeEEeccccce-e-----eehhhhhcccceEeecccch---------
Confidence            34455666666555433      333344445566666554211 1     11225566777777777775         


Q ss_pred             hhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC--CCCCCCCcc-cceEecccccccc
Q 037465          295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE--HLPPLGKLP-LEKLTLYNLKSVK  371 (432)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~l~~~~~l~-L~~L~l~~c~~l~  371 (432)
                            ......+-.++.+.++|.+.+|.... -..+..+=+|.+|++++|+.-.  .+..+|++| |+++.+.+++ +.
T Consensus       341 ------Ls~~~Gwh~KLGNIKtL~La~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~  412 (490)
T KOG1259|consen  341 ------LAECVGWHLKLGNIKTLKLAQNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LA  412 (490)
T ss_pred             ------hHhhhhhHhhhcCEeeeehhhhhHhh-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-cc
Confidence                  23344444566778888888777766 4456677788888888885322  445688899 9999988888 65


Q ss_pred             ccCc
Q 037465          372 RVGN  375 (432)
Q Consensus       372 ~~~~  375 (432)
                      .+++
T Consensus       413 ~~vd  416 (490)
T KOG1259|consen  413 GSVD  416 (490)
T ss_pred             ccch
Confidence            5544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.6e-09  Score=95.41  Aligned_cols=83  Identities=20%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             ccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCc--cCCccccccccc
Q 037465          148 LKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPI--GISKLTSLRTLG  223 (432)
Q Consensus       148 L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~  223 (432)
                      |++|+|+...|+  ++...+..+.+|+.|.+.+.+..+.+...+++-.+|+.|+++.|........  .+.+|+.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            666666666554  3444555666666666666654444545555566666666666644443321  234566666666


Q ss_pred             ceEeccc
Q 037465          224 KFVVGGG  230 (432)
Q Consensus       224 l~~~~~~  230 (432)
                      ++.|...
T Consensus       267 lsWc~l~  273 (419)
T KOG2120|consen  267 LSWCFLF  273 (419)
T ss_pred             chHhhcc
Confidence            6555443

>PLN03150 hypothetical protein; Provisional

Probab=98.59  E-value=1.4e-07  Score=96.35  Aligned_cols=106  Identities=23%  Similarity=0.347  Sum_probs=81.5

Q ss_pred             cceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhccc
Q 037465          115 CLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM  193 (432)
Q Consensus       115 ~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~  193 (432)
                      .++.|+|++|        ...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|...+.+|..++.++
T Consensus       419 ~v~~L~L~~n--------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQ--------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCC--------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            3777888884        334567888888888888888888876 7888888888888888888886678888888888


Q ss_pred             ccceEEcCCCCccccCCccCCcc-cccccccceEec
Q 037465          194 NMRSLLNDNTRSLKYMPIGISKL-TSLRTLGKFVVG  228 (432)
Q Consensus       194 ~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~~~~  228 (432)
                      +|+.|++++|...+.+|..++.. .++..+++.++.
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            88888888888777888776543 345555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.58  E-value=1.3e-08  Score=89.91  Aligned_cols=207  Identities=18%  Similarity=0.099  Sum_probs=135.4

Q ss_pred             cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcc
Q 037465          161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE  240 (432)
Q Consensus       161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  240 (432)
                      +|-.+..+++|+++.++.|. ...+-+-...-+.|+.+.+.+... ... +.+-..+.+...........+    +....
T Consensus       206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~-~~~-~~l~pe~~~~D~~~~E~~t~~----G~~~~  278 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTI-QDV-PSLLPETILADPSGSEPSTSN----GSALV  278 (490)
T ss_pred             cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecccc-ccc-ccccchhhhcCccCCCCCccC----CceEE
Confidence            44456667788888888776 444433333446677777665421 111 122233344333332222221    33334


Q ss_pred             ccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEe
Q 037465          241 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIV  320 (432)
Q Consensus       241 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  320 (432)
                      .+...+.|+.+++++..    + .....+.+-.|.++.|+++.|.+                .....+..+++|+.|+++
T Consensus       279 ~~dTWq~LtelDLS~N~----I-~~iDESvKL~Pkir~L~lS~N~i----------------~~v~nLa~L~~L~~LDLS  337 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNL----I-TQIDESVKLAPKLRRLILSQNRI----------------RTVQNLAELPQLQLLDLS  337 (490)
T ss_pred             ecchHhhhhhccccccc----h-hhhhhhhhhccceeEEeccccce----------------eeehhhhhcccceEeecc
Confidence            44455667888887621    1 23345667789999999999882                122347778999999999


Q ss_pred             eeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEE
Q 037465          321 YYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELS  399 (432)
Q Consensus       321 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  399 (432)
                      +|....+..|-..+.+.+.|.+++| .+..+..++++= |..|++++++ |+.+..- -+         .+.+|.|+.+.
T Consensus       338 ~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV-~~---------IG~LPCLE~l~  405 (490)
T KOG1259|consen  338 GNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDEV-NH---------IGNLPCLETLR  405 (490)
T ss_pred             cchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHHh-cc---------cccccHHHHHh
Confidence            9999888888778999999999999 677787788888 9999999887 6655321 11         14689999999


Q ss_pred             EeCCcccc
Q 037465          400 IEGCPLLE  407 (432)
Q Consensus       400 i~~cp~L~  407 (432)
                      +.++|--.
T Consensus       406 L~~NPl~~  413 (490)
T KOG1259|consen  406 LTGNPLAG  413 (490)
T ss_pred             hcCCCccc
Confidence            99987543

>PLN03150 hypothetical protein; Provisional

Probab=98.52  E-value=1.6e-07  Score=96.06  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             cccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccce
Q 037465          147 HLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF  225 (432)
Q Consensus       147 ~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~  225 (432)
                      .++.|+|+++.+. .+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..++.+++|+.|++.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999876 788899999999999999998667899889999999999999998888899989999999999998


Q ss_pred             EecccccCCCCcCccccccC-ccCCceeeCCCC
Q 037465          226 VVGGGVDGSSTCRLESLKNL-QLLRECGIEGLG  257 (432)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  257 (432)
                      +|...     ...+..+..+ .++..+++.+..
T Consensus       499 ~N~l~-----g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLS-----GRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCccc-----ccCChHHhhccccCceEEecCCc
Confidence            88765     3344444432 345556666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.9e-09  Score=93.03  Aligned_cols=205  Identities=18%  Similarity=0.133  Sum_probs=110.1

Q ss_pred             CCceEEEEeecCCCCC--CCccccc-cCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465           60 GGKVRHLGLNFEGGAP--LPMSFFE-FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT  136 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  136 (432)
                      ...|..+.+...-+++  +.+.+.- -+.|+.+++++.     .++...+...++.|.+|+-|.+.++        ..-.
T Consensus       158 ~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s-----~it~stl~~iLs~C~kLk~lSlEg~--------~LdD  224 (419)
T KOG2120|consen  158 SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNS-----VITVSTLHGILSQCSKLKNLSLEGL--------RLDD  224 (419)
T ss_pred             hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchh-----heeHHHHHHHHHHHHhhhhcccccc--------ccCc
Confidence            3345555544433332  2222222 235777887777     4455556666777888888887773        2223


Q ss_pred             ccCccccCCccccEEEeCCcc-ccc--cchhhhccCCccEEecccccccccC-Chhhhc-ccccceEEcCCCCcccc---
Q 037465          137 EIPENVGKLIHLKYLNLSGLC-IKR--LPETLCELYNLQKLDIRWCRNLREL-PAGIGK-LMNMRSLLNDNTRSLKY---  208 (432)
Q Consensus       137 ~lp~~~~~l~~L~~L~L~~~~-l~~--lp~~i~~l~~L~~L~l~~~~~~~~l-p~~i~~-l~~L~~L~l~~~~~~~~---  208 (432)
                      .+...+.+-.+|+.|+++.|. +++  +...+..++.|+.|++++|...... ...+.. -.+|+.|+++++...-.   
T Consensus       225 ~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh  304 (419)
T KOG2120|consen  225 PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH  304 (419)
T ss_pred             HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH
Confidence            345566667778888887776 552  2334667777788888877633322 111222 24677777776632111   


Q ss_pred             CCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeec
Q 037465          209 MPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFG  284 (432)
Q Consensus       209 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  284 (432)
                      +..-..++++|.+|+++++....    ...+..+-+++.|+.+++++|-.+..   .....+...+.|.+|++.++
T Consensus       305 ~~tL~~rcp~l~~LDLSD~v~l~----~~~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  305 LSTLVRRCPNLVHLDLSDSVMLK----NDCFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHHhCCceeeeccccccccC----chHHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence            11112356666666666665543    33444455555556666655544432   22334444555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=5e-07  Score=62.25  Aligned_cols=57  Identities=33%  Similarity=0.480  Sum_probs=29.4

Q ss_pred             cceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465          115 CLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR  180 (432)
Q Consensus       115 ~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~  180 (432)
                      +|++|++++         +.+..+| ..|..+++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~---------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSN---------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETS---------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCC---------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            455555555         4455553 244455555555555555555543 44555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=4.8e-07  Score=62.32  Aligned_cols=59  Identities=37%  Similarity=0.542  Sum_probs=36.9

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCcc
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLC  157 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~  157 (432)
                      ++|++|++++|++     . .+.+..|..+++|++|++++         +.++.+ |..|..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l-----~-~i~~~~f~~l~~L~~L~l~~---------N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKL-----T-EIPPDSFSNLPNLETLDLSN---------NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTE-----S-EECTTTTTTGTTESEEEETS---------SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCC-----C-ccCHHHHcCCCCCCEeEccC---------CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4566777777743     2 22344566777777777776         556666 3456667777777777665

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=3.8e-07  Score=80.71  Aligned_cols=231  Identities=17%  Similarity=0.060  Sum_probs=123.7

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc-
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK-  159 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~-  159 (432)
                      +..+.+..|.+.++.+.+   .+. ...+-..+..++.|||.+|.+      ....++...+.+||+|++|+++.|.+. 
T Consensus        42 ~s~ra~ellvln~~~id~---~gd-~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s  111 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDN---EGD-VMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSS  111 (418)
T ss_pred             ccccchhhheecCCCCCc---chh-HHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCC
Confidence            334455566666765432   122 233346678888888888432      223345555677888888888888744 


Q ss_pred             ---ccchhhhccCCccEEeccccccc-ccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCC
Q 037465          160 ---RLPETLCELYNLQKLDIRWCRNL-RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSS  235 (432)
Q Consensus       160 ---~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~  235 (432)
                         ++|   ..+.+|++|-+.++... ..+...+..++.+++|.++.|              +++.+.+..+....    
T Consensus       112 ~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N--------------~~rq~n~Dd~c~e~----  170 (418)
T KOG2982|consen  112 DIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN--------------SLRQLNLDDNCIED----  170 (418)
T ss_pred             ccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc--------------hhhhhccccccccc----
Confidence               444   35578888888876621 223333456677777777766              22222222221111    


Q ss_pred             CcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCc
Q 037465          236 TCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVE  315 (432)
Q Consensus       236 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~  315 (432)
                        .      -+.++.++..+|....-  ........-++++..+.+..|++.             ..........+|.+.
T Consensus       171 --~------s~~v~tlh~~~c~~~~w--~~~~~l~r~Fpnv~sv~v~e~PlK-------------~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  171 --W------STEVLTLHQLPCLEQLW--LNKNKLSRIFPNVNSVFVCEGPLK-------------TESSEKGSEPFPSLS  227 (418)
T ss_pred             --c------chhhhhhhcCCcHHHHH--HHHHhHHhhcccchheeeecCccc-------------chhhcccCCCCCcch
Confidence              0      01122222222211000  000111233566666777666531             222333444556666


Q ss_pred             EEEEeeeCCCCC--ChhhhccCCCcEEEEeCCCCCCCCCC-------CCCcc-cceEecc
Q 037465          316 ELWIVYYGGNIF--PKWLTSLTNLRNLYLSSCFNCEHLPP-------LGKLP-LEKLTLY  365 (432)
Q Consensus       316 ~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~~-------~~~l~-L~~L~l~  365 (432)
                      -|+|+.+....+  .+.+..+|+|..|.+++++....+..       ++.++ ++.|+=+
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            677766655442  34456899999999999887765542       35566 6666433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.23  E-value=1.3e-07  Score=92.22  Aligned_cols=129  Identities=24%  Similarity=0.260  Sum_probs=84.8

Q ss_pred             ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc
Q 037465           82 EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL  161 (432)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l  161 (432)
                      .+..+..+.+..|.+.     .  ....+..+.+|.+|++..         +.+..+...+..+++|++|++++|.|..+
T Consensus        70 ~l~~l~~l~l~~n~i~-----~--~~~~l~~~~~l~~l~l~~---------n~i~~i~~~l~~~~~L~~L~ls~N~I~~i  133 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-----K--ILNHLSKLKSLEALDLYD---------NKIEKIENLLSSLVNLQVLDLSFNKITKL  133 (414)
T ss_pred             HhHhHHhhccchhhhh-----h--hhcccccccceeeeeccc---------cchhhcccchhhhhcchheeccccccccc
Confidence            3555566666666331     1  122366777788888887         66777754467788888888888887777


Q ss_pred             chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccCCcccccccccceEeccc
Q 037465          162 PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       162 p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~  230 (432)
                      . .+..++.|+.|++.+|. +..+. .+..++.|+.+++++|.....-+ . ...+.+++.+++.++...
T Consensus       134 ~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  134 E-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             c-chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            4 66677778888888877 55443 44557778888888775443322 1 356777777777776655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.22  E-value=8.1e-08  Score=83.77  Aligned_cols=93  Identities=19%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC-----CChhhh--ccCCCcEEEE
Q 037465          270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI-----FPKWLT--SLTNLRNLYL  342 (432)
Q Consensus       270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~--~l~~L~~L~l  342 (432)
                      +..+.+|+.|++..|.+.          ......+...+...+.|..|.+.+|-...     +...+.  ..|+|..|..
T Consensus       210 l~y~~~LevLDlqDNtft----------~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~  279 (388)
T COG5238         210 LFYSHSLEVLDLQDNTFT----------LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPG  279 (388)
T ss_pred             HHHhCcceeeeccccchh----------hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcccccc
Confidence            344555556665555411          11222333344444555666665554332     111111  4677777777


Q ss_pred             eCCCCCC------CCCCC--CCcc-cceEecccccccccc
Q 037465          343 SSCFNCE------HLPPL--GKLP-LEKLTLYNLKSVKRV  373 (432)
Q Consensus       343 ~~~~~~~------~l~~~--~~l~-L~~L~l~~c~~l~~~  373 (432)
                      .+|..-.      .++.+  +++| |..|.+.++. ++..
T Consensus       280 ~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E~  318 (388)
T COG5238         280 DYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKEL  318 (388)
T ss_pred             chhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chhH
Confidence            7764322      12222  4677 7777777666 4433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.11  E-value=3.3e-07  Score=89.48  Aligned_cols=192  Identities=27%  Similarity=0.320  Sum_probs=121.9

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      ..+..+.+..+.+..+...+..+++|..|++.+|.+..       +...+..+++|++|++++         +.++.+. 
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-------i~~~l~~~~~L~~L~ls~---------N~I~~i~-  134 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-------IENLLSSLVNLQVLDLSF---------NKITKLE-  134 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhh-------cccchhhhhcchheeccc---------ccccccc-
Confidence            34555556666666545557788899999999996532       333367799999999999         7788874 


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      .+..+..|+.|++.+|.|..+. .+..++.|+.+++++|. +..+... ...+.+++.+++.+|.....  ..+..+..+
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l  210 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKL  210 (414)
T ss_pred             chhhccchhhheeccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHH
Confidence            5677888999999999988775 55668999999999998 5444432 57788899999988844332  223344444


Q ss_pred             ccccceEecccccCCCCcCccccccCcc--CCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQL--LRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      ..+++..+....       ...+..+..  |+.+++.+-... .    ....+..+..+..+++..+.
T Consensus       211 ~~~~l~~n~i~~-------~~~l~~~~~~~L~~l~l~~n~i~-~----~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  211 VLLSLLDNKISK-------LEGLNELVMLHLRELYLSGNRIS-R----SPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             HHhhccccccee-------ccCcccchhHHHHHHhcccCccc-c----ccccccccccccccchhhcc
Confidence            444444444332       222222222  555555541110 0    00344556666666666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.08  E-value=1.5e-05  Score=75.52  Aligned_cols=61  Identities=25%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             CccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC
Q 037465          145 LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP  210 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p  210 (432)
                      +.+++.|++++|.++.+| .+  -.+|+.|.+++|..+..+|..+  ..+|+.|++++|..+..+|
T Consensus        51 ~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            344555555555444444 11  1235555555554444444333  1345555555554333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=6.2e-06  Score=52.17  Aligned_cols=38  Identities=37%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             cceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc
Q 037465          115 CLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL  161 (432)
Q Consensus       115 ~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l  161 (432)
                      +|++|++++         +.++++|..+++|++|++|++++|.++.+
T Consensus         2 ~L~~L~l~~---------N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSN---------NQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETS---------SS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccC---------CCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            455555555         44555554455555555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=8.7e-06  Score=51.51  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             ccccEEEeCCccccccchhhhccCCccEEecccccccccCC
Q 037465          146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP  186 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp  186 (432)
                      ++|++|++++|.|+.+|+.+++|++|++|++++|. +..++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            46788888888888888778888888888888887 55443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.93  E-value=3.5e-07  Score=90.03  Aligned_cols=20  Identities=40%  Similarity=0.630  Sum_probs=15.6

Q ss_pred             CccccccCcccEEEEecCCc
Q 037465           77 PMSFFEFDRLRSLLIYDESL   96 (432)
Q Consensus        77 ~~~~~~~~~L~~L~l~~~~~   96 (432)
                      |-.+..++.||.|.+.+|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L  121 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDL  121 (1096)
T ss_pred             CceeccccceeeEEecCcch
Confidence            66777788888888888864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=5.3e-06  Score=84.98  Aligned_cols=60  Identities=25%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             cCCccccEEEeCCccccccchhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCC
Q 037465          143 GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNT  203 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~  203 (432)
                      .++++|+.|++++++++.+ ..++.|++|++|.+++=.+.. ..-.++..|++|++||+|..
T Consensus       170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            3455555555555555555 355555555555554433111 11123445555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.89  E-value=6.1e-07  Score=70.36  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=66.7

Q ss_pred             eEEEEeecCCCCCCCcc---ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           63 VRHLGLNFEGGAPLPMS---FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        63 i~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ...++++.+.+-.++..   +....+|+..++++|.+     ... ++.+-..++.++.|++++         +.+.++|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-----k~f-p~kft~kf~t~t~lNl~~---------neisdvP   93 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-----KKF-PKKFTIKFPTATTLNLAN---------NEISDVP   93 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-----hhC-CHHHhhccchhhhhhcch---------hhhhhch
Confidence            34455555544433333   33444566667777632     222 444445556677777777         6677777


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChh
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG  188 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~  188 (432)
                      .++..++.|+.|++++|.+...|..+..|.+|-.|+..++. ...+|.+
T Consensus        94 eE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen   94 EELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             HHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            77777777777777777777777666667777777776665 5555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.81  E-value=6.9e-07  Score=88.04  Aligned_cols=127  Identities=19%  Similarity=0.208  Sum_probs=99.7

Q ss_pred             cCCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           59 FGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        59 ~~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .|..+...++++|.+..+..++.-++.|+.|+++.|++.     .  .. .+..|++|+.|||++         |.+..+
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-----~--v~-~Lr~l~~LkhLDlsy---------N~L~~v  224 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-----K--VD-NLRRLPKLKHLDLSY---------NCLRHV  224 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-----h--hH-HHHhccccccccccc---------chhccc
Confidence            477888889999988877778888899999999999542     2  22 488999999999999         778777


Q ss_pred             Ccc-ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCc
Q 037465          139 PEN-VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       139 p~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~  205 (432)
                      |.- ...++ |+.|++++|.++++- .+.+|.+|+.||+++|- +....  .-++.+..|+.|++.+|+.
T Consensus       225 p~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  225 PQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            642 22233 999999999998885 78899999999999986 43221  2356788899999999864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.80  E-value=1.4e-05  Score=81.89  Aligned_cols=150  Identities=21%  Similarity=0.245  Sum_probs=103.6

Q ss_pred             CCceEEEEeecCCCCC--CCcccc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465           60 GGKVRHLGLNFEGGAP--LPMSFF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT  136 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  136 (432)
                      ..+++.|++.+...-.  .+..++ -+|.|++|.+.+-.+     ...-+.....++++|+.||+|+         +.++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~---------TnI~  186 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISG---------TNIS  186 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCC---------CCcc
Confidence            4578888887754322  233333 489999999999743     2222555678999999999999         7788


Q ss_pred             ccCccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCChhh-------hcccccceEEcCCCCccc
Q 037465          137 EIPENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPAGI-------GKLMNMRSLLNDNTRSLK  207 (432)
Q Consensus       137 ~lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~i-------~~l~~L~~L~l~~~~~~~  207 (432)
                      .+ ..++.|++|+.|.+.+-.+..-.  ..+..|++|++||++....... +..+       ..+++|+.||.+++....
T Consensus       187 nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  187 NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhH
Confidence            88 68999999999999988766422  4788999999999998763322 2111       248899999999875544


Q ss_pred             cCCcc-CCcccccccccce
Q 037465          208 YMPIG-ISKLTSLRTLGKF  225 (432)
Q Consensus       208 ~~p~~-l~~l~~L~~L~l~  225 (432)
                      .+-.. +...++|+...+.
T Consensus       265 ~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  265 EILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHHHHHHhCccHhhhhhh
Confidence            33322 2344455554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=4.8e-05  Score=72.18  Aligned_cols=83  Identities=25%  Similarity=0.369  Sum_probs=55.8

Q ss_pred             ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCc-cc
Q 037465           80 FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL-CI  158 (432)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~-~l  158 (432)
                      +..+.+++.|++++|.++.       +|.   --.+|+.|.+++|        ..++.+|..+  ..+|++|.+++| .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-------LP~---LP~sLtsL~Lsnc--------~nLtsLP~~L--P~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-------LPV---LPNELTEITIENC--------NNLTTLPGSI--PEGLEKLTVCHCPEI  107 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-------cCC---CCCCCcEEEccCC--------CCcccCCchh--hhhhhheEccCcccc
Confidence            3457889999999985432       332   1235999999988        6677777655  368999999998 47


Q ss_pred             cccchhhhccCCccEEeccccc--ccccCChh
Q 037465          159 KRLPETLCELYNLQKLDIRWCR--NLRELPAG  188 (432)
Q Consensus       159 ~~lp~~i~~l~~L~~L~l~~~~--~~~~lp~~  188 (432)
                      ..+|..      |+.|++..+.  .+..+|..
T Consensus       108 ~sLP~s------Le~L~L~~n~~~~L~~LPss  133 (426)
T PRK15386        108 SGLPES------VRSLEIKGSATDSIKNVPNG  133 (426)
T ss_pred             cccccc------cceEEeCCCCCcccccCcch
Confidence            788754      5556665433  24556554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=1.7e-05  Score=70.50  Aligned_cols=104  Identities=22%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             EEEeecCCCCCCC--ccc-cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           65 HLGLNFEGGAPLP--MSF-FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        65 ~L~l~~~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      -+.+.++.+....  ..| ..++.++.+++.+|.++.++-    +...+..+|+|++|+++.|+.-     ..++.+|  
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWse----I~~ile~lP~l~~LNls~N~L~-----s~I~~lp--  117 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSE----IGAILEQLPALTTLNLSCNSLS-----SDIKSLP--  117 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHH----HHHHHhcCccceEeeccCCcCC-----CccccCc--
Confidence            3455555554421  122 358889999999998765332    4455789999999999995321     2244444  


Q ss_pred             ccCCccccEEEeCCcccc--ccchhhhccCCccEEeccccc
Q 037465          142 VGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~  180 (432)
                       ..+.+|++|-|.++.+.  .+...+..+++++.|.++.|.
T Consensus       118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence             34678999999988854  555566777777777777663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=7.7e-06  Score=64.30  Aligned_cols=106  Identities=24%  Similarity=0.267  Sum_probs=79.3

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcccc-CCccccEEEeCCccccccc
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG-KLIHLKYLNLSGLCIKRLP  162 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~lp  162 (432)
                      ..+..+++++|.+..   ... ....+....+|...++++         |.++++|..|. +.+.+..|++++|.|..+|
T Consensus        27 kE~h~ldLssc~lm~---i~d-avy~l~~~~el~~i~ls~---------N~fk~fp~kft~kf~t~t~lNl~~neisdvP   93 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMY---IAD-AVYMLSKGYELTKISLSD---------NGFKKFPKKFTIKFPTATTLNLANNEISDVP   93 (177)
T ss_pred             HHhhhcccccchhhH---HHH-HHHHHhCCceEEEEeccc---------chhhhCCHHHhhccchhhhhhcchhhhhhch
Confidence            345667777774311   111 122256667788888888         77888887774 4568889999999999999


Q ss_pred             hhhhccCCccEEecccccccccCChhhhcccccceEEcCCC
Q 037465          163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNT  203 (432)
Q Consensus       163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  203 (432)
                      ..+..++.|+.|+++.|. +...|..+..+.++..|+..++
T Consensus        94 eE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   94 EELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             HHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence            888899999999999888 7777888888888888888777

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.47  E-value=9.5e-05  Score=65.02  Aligned_cols=224  Identities=17%  Similarity=0.084  Sum_probs=122.1

Q ss_pred             ccCCcceEEEeCCCCCCCCCCCCccc-----ccCccccCCccccEEEeCCcccc----c-------cchhhhccCCccEE
Q 037465          111 SKLACLRALVISQSSSFSHPGPNLIT-----EIPENVGKLIHLKYLNLSGLCIK----R-------LPETLCELYNLQKL  174 (432)
Q Consensus       111 ~~l~~L~~L~L~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~----~-------lp~~i~~l~~L~~L  174 (432)
                      ..+..+..++||+|         .++     .+...+.+-.+|+..+++.-...    .       +.+.+-+|++|++.
T Consensus        27 ~~~d~~~evdLSGN---------tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v   97 (388)
T COG5238          27 EMMDELVEVDLSGN---------TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV   97 (388)
T ss_pred             HhhcceeEEeccCC---------cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence            34555666666663         222     23344455566666666543321    2       22345677888888


Q ss_pred             ecccccccccCChh----hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCc
Q 037465          175 DIRWCRNLRELPAG----IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE  250 (432)
Q Consensus       175 ~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~  250 (432)
                      ++++|.+....|..    |++-+.|.+|.+++|..-..--..+++  .|.+|-.              .....+-+.|+.
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~--------------nKKaa~kp~Le~  161 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAY--------------NKKAADKPKLEV  161 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHH--------------HhhhccCCCceE
Confidence            88888866666654    456678888888888322111111221  2333211              112223455666


Q ss_pred             eeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC----
Q 037465          251 CGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI----  326 (432)
Q Consensus       251 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----  326 (432)
                      +.+.+..--..........+..-..|+.+.+..|.++..-+         ..-.+-.+.-+.+|+.|++.+|..+.    
T Consensus       162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv---------~~L~~~gl~y~~~LevLDlqDNtft~~gS~  232 (388)
T COG5238         162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV---------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSR  232 (388)
T ss_pred             EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh---------HHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence            65554211112222233344445789999999888543211         12233345567889999999887654    


Q ss_pred             -CChhhhccCCCcEEEEeCCCCCCC-CC----CC--CCcc-cceEeccccc
Q 037465          327 -FPKWLTSLTNLRNLYLSSCFNCEH-LP----PL--GKLP-LEKLTLYNLK  368 (432)
Q Consensus       327 -~~~~l~~l~~L~~L~l~~~~~~~~-l~----~~--~~l~-L~~L~l~~c~  368 (432)
                       +...+...+.|+.|.+.+|-.... ..    .+  ...| |..|-..++.
T Consensus       233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence             122233557799999999954332 11    11  2256 7777777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.18  E-value=3.4e-05  Score=76.98  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=22.7

Q ss_pred             cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccccccc
Q 037465          359 LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRY  410 (432)
Q Consensus       359 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~  410 (432)
                      ++.|.+..|..++.........          .+.+++.+.+.+|+.+....
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~----------~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLAD----------SCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             cceEecccCccccccchHHHhh----------hhhccccCCccCcccccchh
Confidence            4566666665444443322211          14566777777777776554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.12  E-value=6.7e-05  Score=74.89  Aligned_cols=113  Identities=19%  Similarity=0.107  Sum_probs=62.6

Q ss_pred             ccCCccEEeccccccccc--CChhhhcccccceEEcCCC-CccccCC----ccCCcccccccccceEecccccCCCCcCc
Q 037465          167 ELYNLQKLDIRWCRNLRE--LPAGIGKLMNMRSLLNDNT-RSLKYMP----IGISKLTSLRTLGKFVVGGGVDGSSTCRL  239 (432)
Q Consensus       167 ~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~l~~~-~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  239 (432)
                      .++.|+.|.+.+|..+..  +-.....++.|+.|+++++ ......+    .....+.+|+.|++..+....    ...+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----d~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----DIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC----chhH
Confidence            356677777776654443  2233445677777777652 2222111    122345667777776665332    3333


Q ss_pred             ccccc-CccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          240 ESLKN-LQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       240 ~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      ..+.. +++|+.|.+..|..+++  .........++.|++|++++|.
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCc
Confidence            33333 66777777666665333  3444555667777777777776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=4.3e-05  Score=67.37  Aligned_cols=79  Identities=20%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-  139 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-  139 (432)
                      .++++|.+-++++.++. ...+|+.|++|.|+-|+|+.       +.. +..|..|++|+|..         |.+.++. 
T Consensus        19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIss-------L~p-l~rCtrLkElYLRk---------N~I~sldE   80 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISS-------LAP-LQRCTRLKELYLRK---------NCIESLDE   80 (388)
T ss_pred             HHhhhhcccCCCccHHH-HHHhcccceeEEeecccccc-------chh-HHHHHHHHHHHHHh---------cccccHHH
Confidence            34555555555555421 12445555555555554322       222 45555555555555         3333331 


Q ss_pred             -ccccCCccccEEEeCCcc
Q 037465          140 -ENVGKLIHLKYLNLSGLC  157 (432)
Q Consensus       140 -~~~~~l~~L~~L~L~~~~  157 (432)
                       ..+.++++|+.|.|..|.
T Consensus        81 L~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHHhcCchhhhHhhccCC
Confidence             233445555555554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.06  E-value=0.00077  Score=56.88  Aligned_cols=107  Identities=24%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhc-cCCccEEecccccccccCCh--hh
Q 037465          113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCE-LYNLQKLDIRWCRNLRELPA--GI  189 (432)
Q Consensus       113 l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~--~i  189 (432)
                      ..+...+||+.         +.+..++ .+..++.|.+|.+.+|+|..+.+.+.. +++|..|.+.+|. +.++-+  -+
T Consensus        41 ~d~~d~iDLtd---------Ndl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pL  109 (233)
T KOG1644|consen   41 LDQFDAIDLTD---------NDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPL  109 (233)
T ss_pred             ccccceecccc---------cchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchh
Confidence            34455667766         5555553 455667777777777777766555443 3457777777766 433321  24


Q ss_pred             hcccccceEEcCCCCccccC---CccCCcccccccccceEeccc
Q 037465          190 GKLMNMRSLLNDNTRSLKYM---PIGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       190 ~~l~~L~~L~l~~~~~~~~~---p~~l~~l~~L~~L~l~~~~~~  230 (432)
                      ..+++|+.|.+-+|+....-   --.+..+++|+.||+......
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            56677777777666443311   112456777777777665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.02  E-value=0.00057  Score=57.67  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=47.1

Q ss_pred             ccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhh-cccccceEEcCCCCccccCC--ccCCcccccccc
Q 037465          146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIG-KLMNMRSLLNDNTRSLKYMP--IGISKLTSLRTL  222 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L  222 (432)
                      .....++|+.|.+..++ .+..++.|++|.+..|. +..+-..+. .+++|..|.+.+|.... +.  ..+..|+.|++|
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhh-hhhcchhccCCcccee
Confidence            34556777777766554 55666777777777776 333333343 35567777777763322 21  124456666666


Q ss_pred             cceEeccc
Q 037465          223 GKFVVGGG  230 (432)
Q Consensus       223 ~l~~~~~~  230 (432)
                      .+.++...
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            66665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=4.4e-05  Score=67.29  Aligned_cols=100  Identities=22%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             CCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCCh--hhh
Q 037465          113 LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA--GIG  190 (432)
Q Consensus       113 l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~i~  190 (432)
                      +.+.+.|+.-+         +.+.++ +...+|+.|++|.|+-|.|+++. .+..+++|+.|.|+.|. +..+-.  -+.
T Consensus        18 l~~vkKLNcwg---------~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWG---------CGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccC---------CCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence            44555566555         345555 23456777777777777777774 56677777777777766 443321  134


Q ss_pred             cccccceEEcCCCCccccCCcc-----CCcccccccccc
Q 037465          191 KLMNMRSLLNDNTRSLKYMPIG-----ISKLTSLRTLGK  224 (432)
Q Consensus       191 ~l~~L~~L~l~~~~~~~~~p~~-----l~~l~~L~~L~l  224 (432)
                      ++++|+.|.+..|+..+.-+..     +..+++|++|+-
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            5566666666666554433321     334556665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0019  Score=56.83  Aligned_cols=84  Identities=25%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcc--cc-ccchhhhccCCccEEeccccccc--cc
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC--IK-RLPETLCELYNLQKLDIRWCRNL--RE  184 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~--l~-~lp~~i~~l~~L~~L~l~~~~~~--~~  184 (432)
                      .-.+..|+.|.+.+         ..++.+ ..+-.|++|++|.++.|.  +. .++....++++|++|++++|++-  ..
T Consensus        39 ~d~~~~le~ls~~n---------~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   39 TDEFVELELLSVIN---------VGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             cccccchhhhhhhc---------cceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence            34445555555555         223332 233446677777777663  22 44444455577777777766621  12


Q ss_pred             CChhhhcccccceEEcCCCC
Q 037465          185 LPAGIGKLMNMRSLLNDNTR  204 (432)
Q Consensus       185 lp~~i~~l~~L~~L~l~~~~  204 (432)
                      ++ .+..+.+|..|++.+|.
T Consensus       109 l~-pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  109 LR-PLKELENLKSLDLFNCS  127 (260)
T ss_pred             cc-hhhhhcchhhhhcccCC
Confidence            21 23455566666666663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.12  E-value=0.0015  Score=57.44  Aligned_cols=91  Identities=18%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             cCccccCCccccEEEeCCccccccchhhhccCCccEEecccc--cccccCChhhhcccccceEEcCCCCccc--cCCccC
Q 037465          138 IPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWC--RNLRELPAGIGKLMNMRSLLNDNTRSLK--YMPIGI  213 (432)
Q Consensus       138 lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l  213 (432)
                      +..-.-.+..|+.|++.++.++++. .+..|++|++|.++.|  .....++.-...+++|++|++++|++-.  .+ ..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chh
Confidence            4333445666777777777766553 5567788999999888  3334444444556888888888884421  11 113


Q ss_pred             CcccccccccceEeccc
Q 037465          214 SKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       214 ~~l~~L~~L~l~~~~~~  230 (432)
                      ..+.+|..|++.+|...
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            45556666666665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0066  Score=31.84  Aligned_cols=17  Identities=41%  Similarity=0.823  Sum_probs=7.8

Q ss_pred             ccEEEeCCccccccchh
Q 037465          148 LKYLNLSGLCIKRLPET  164 (432)
Q Consensus       148 L~~L~L~~~~l~~lp~~  164 (432)
                      |++|++++|.++.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.48  E-value=0.064  Score=42.69  Aligned_cols=103  Identities=17%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCcc
Q 037465           79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLC  157 (432)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~  157 (432)
                      +|.++++|+.+.+... +      ..+....|..+++|+.+.+..         + +..++ ..+.+++.|+.+.+.. .
T Consensus         7 ~F~~~~~l~~i~~~~~-~------~~I~~~~F~~~~~l~~i~~~~---------~-~~~i~~~~F~~~~~l~~i~~~~-~   68 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT-I------KKIGENAFSNCTSLKSINFPN---------N-LTSIGDNAFSNCKSLESITFPN-N   68 (129)
T ss_dssp             TTTT-TT--EEEETST---------EE-TTTTTT-TT-SEEEESS---------T-TSCE-TTTTTT-TT-EEEEETS-T
T ss_pred             HHhCCCCCCEEEECCC-e------eEeChhhcccccccccccccc---------c-ccccceeeeecccccccccccc-c
Confidence            4566667777766532 1      122333466666777777665         2 44442 2455565677777754 4


Q ss_pred             ccccch-hhhccCCccEEecccccccccCChh-hhcccccceEEcCC
Q 037465          158 IKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDN  202 (432)
Q Consensus       158 l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~  202 (432)
                      +..++. .+..+++|+.+.+..+  +..++.. +..+ +|+.+.+..
T Consensus        69 ~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   69 LKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            444443 3444666666666542  2233222 3333 566655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.43  E-value=0.026  Score=29.52  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=14.3

Q ss_pred             cceEEEeCCCCCCCCCCCCcccccCccccC
Q 037465          115 CLRALVISQSSSFSHPGPNLITEIPENVGK  144 (432)
Q Consensus       115 ~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~  144 (432)
                      +|++|++++         +.++.+|+.|++
T Consensus         1 ~L~~Ldls~---------n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSG---------NNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETS---------SEESEEGTTTTT
T ss_pred             CccEEECCC---------CcCEeCChhhcC
Confidence            467788877         566677766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.10  E-value=0.037  Score=26.88  Aligned_cols=13  Identities=31%  Similarity=0.388  Sum_probs=4.3

Q ss_pred             ccEEEeCCccccc
Q 037465          148 LKYLNLSGLCIKR  160 (432)
Q Consensus       148 L~~L~L~~~~l~~  160 (432)
                      |+.|++++|++++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.20  E-value=0.51  Score=37.39  Aligned_cols=114  Identities=14%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.+.+.. .+..+ ..+|.++++|+.+.+.++ +      ..+....|..++.|+.+.+..          .+..+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~------~~i~~~~F~~~~~l~~i~~~~----------~~~~i   72 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L------TSIGDNAFSNCKSLESITFPN----------NLKSI   72 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T------SCE-TTTTTT-TT-EEEEETS----------TT-EE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-c------cccceeeeecccccccccccc----------ccccc
Confidence            34677777764 44444 446888989999999775 3      222334588898999999975          24444


Q ss_pred             C-ccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhccccc
Q 037465          139 P-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNM  195 (432)
Q Consensus       139 p-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L  195 (432)
                      + ..+..+.+|+.+.+..+ +..++. .+... +|+.+.+..+  ...++. .+.++++|
T Consensus        73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            3 35667899999999765 666654 45555 8888887652  333333 34445454

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=0.034  Score=47.24  Aligned_cols=69  Identities=25%  Similarity=0.355  Sum_probs=51.0

Q ss_pred             hhhccCCCcEEEEeCCCCCCC--CCCCCC-cc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465          330 WLTSLTNLRNLYLSSCFNCEH--LPPLGK-LP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL  405 (432)
Q Consensus       330 ~l~~l~~L~~L~l~~~~~~~~--l~~~~~-l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~  405 (432)
                      -+.+++.++.|.+.+|....+  +..+++ .| |+.|+|++|+.|++-+-..+.           .+++|+.|.+.+.|.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-----------~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-----------KLKNLRRLHLYDLPY  188 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-----------HhhhhHHHHhcCchh
Confidence            344778888888888876663  333443 46 999999999999988766553           488999999998887


Q ss_pred             cccc
Q 037465          406 LENR  409 (432)
Q Consensus       406 L~~~  409 (432)
                      ....
T Consensus       189 v~~~  192 (221)
T KOG3864|consen  189 VANL  192 (221)
T ss_pred             hhch
Confidence            7644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.94  E-value=0.034  Score=47.23  Aligned_cols=88  Identities=18%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             CccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccC-CcccccccccceEecccccCCCCcCccccccCcc
Q 037465          170 NLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGI-SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQL  247 (432)
Q Consensus       170 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~  247 (432)
                      .++.+|.+++.+..+=-..+..++.++.|.+.+|......- ..+ +-.++|+.|++++|+..+    ......+.++++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT----~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT----DGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec----hhHHHHHHHhhh
Confidence            34555555544222222334445555555555553332111 011 134566666666666554    455566666666


Q ss_pred             CCceeeCCCCCCCC
Q 037465          248 LRECGIEGLGNVSH  261 (432)
Q Consensus       248 L~~L~l~~~~~~~~  261 (432)
                      |+.|.+.+.+.+..
T Consensus       178 Lr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  178 LRRLHLYDLPYVAN  191 (221)
T ss_pred             hHHHHhcCchhhhc
Confidence            66666666555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.19  E-value=0.008  Score=52.05  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc
Q 037465           80 FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK  159 (432)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~  159 (432)
                      +......+.|+++.|++.+       ...-|+-+..|..|+++.         +.+..+|..++.+..++.+.+..|..+
T Consensus        38 i~~~kr~tvld~~s~r~vn-------~~~n~s~~t~~~rl~~sk---------nq~~~~~~d~~q~~e~~~~~~~~n~~~  101 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-------LGKNFSILTRLVRLDLSK---------NQIKFLPKDAKQQRETVNAASHKNNHS  101 (326)
T ss_pred             hhccceeeeehhhhhHHHh-------hccchHHHHHHHHHhccH---------hhHhhChhhHHHHHHHHHHHhhccchh
Confidence            3445566667776665321       222244555566667766         666677777776666777776666677


Q ss_pred             ccchhhhccCCccEEecccccc
Q 037465          160 RLPETLCELYNLQKLDIRWCRN  181 (432)
Q Consensus       160 ~lp~~i~~l~~L~~L~l~~~~~  181 (432)
                      ..|.+.++.+++++++..++.+
T Consensus       102 ~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  102 QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hCCccccccCCcchhhhccCcc
Confidence            7777777777777777766653

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.91  E-value=0.16  Score=27.68  Aligned_cols=18  Identities=22%  Similarity=0.569  Sum_probs=14.6

Q ss_pred             CCCcceEEEeCCcccccc
Q 037465          392 SSSSSELSIEGCPLLENR  409 (432)
Q Consensus       392 ~~~L~~L~i~~cp~L~~~  409 (432)
                      +++|+.|++++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            468889999999888764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.49  E-value=0.31  Score=26.47  Aligned_cols=18  Identities=33%  Similarity=0.442  Sum_probs=9.1

Q ss_pred             ccccEEEeCCccccccch
Q 037465          146 IHLKYLNLSGLCIKRLPE  163 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp~  163 (432)
                      .+|++|++++|.+..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.49  E-value=0.31  Score=26.47  Aligned_cols=18  Identities=33%  Similarity=0.442  Sum_probs=9.1

Q ss_pred             ccccEEEeCCccccccch
Q 037465          146 IHLKYLNLSGLCIKRLPE  163 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp~  163 (432)
                      .+|++|++++|.+..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.39  E-value=0.0071  Score=59.64  Aligned_cols=190  Identities=18%  Similarity=0.108  Sum_probs=116.3

Q ss_pred             ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCC-ccccEEEeCCcccc
Q 037465           86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKL-IHLKYLNLSGLCIK  159 (432)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l-~~L~~L~L~~~~l~  159 (432)
                      +..|.+.+|.+....  ...+...+..++.|..|++++|         .++.     +-..+... ..|++|.+..|.+.
T Consensus        89 l~~L~L~~~~l~~~~--~~~l~~~l~t~~~L~~L~l~~n---------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~  157 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRG--AEELAQALKTLPTLGQLDLSGN---------NLGDEGARLLCEGLRLPQCLLQTLELVSCSLT  157 (478)
T ss_pred             HHHhhhhhCccccch--HHHHHHHhcccccHhHhhcccC---------CCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence            677777777653321  1124455677888888888884         3332     22223332 55777888877755


Q ss_pred             -----ccchhhhccCCccEEecccccccc----cCChhhh----cccccceEEcCCCCcccc----CCccCCcccc-ccc
Q 037465          160 -----RLPETLCELYNLQKLDIRWCRNLR----ELPAGIG----KLMNMRSLLNDNTRSLKY----MPIGISKLTS-LRT  221 (432)
Q Consensus       160 -----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~i~----~l~~L~~L~l~~~~~~~~----~p~~l~~l~~-L~~  221 (432)
                           .+...+.....++.++++.|....    .++..+.    ...++++|++.+|.....    +...+...++ +..
T Consensus       158 ~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e  237 (478)
T KOG4308|consen  158 SEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE  237 (478)
T ss_pred             ccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence                 345566667788888888887431    1222333    356788888888854321    1122444555 666


Q ss_pred             ccceEecccccCCCCcCccccccC-ccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecccc
Q 037465          222 LGKFVVGGGVDGSSTCRLESLKNL-QLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVV  287 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  287 (432)
                      |++..+...+. ......+.+..+ ..++.+++..+.............+..++.++.+.++.|.+.
T Consensus       238 l~l~~n~l~d~-g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  238 LDLASNKLGDV-GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhcCcchH-HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            77777766531 001122334444 566778888877766666777788888889999999988743

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.59  E-value=0.026  Score=48.99  Aligned_cols=90  Identities=18%  Similarity=0.108  Sum_probs=73.7

Q ss_pred             hhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC
Q 037465          107 PELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP  186 (432)
Q Consensus       107 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp  186 (432)
                      ...+.....-++||++.         +....+-..++.+..|..|+++.+.+..+|..++....++.+++..|. ....|
T Consensus        35 v~ei~~~kr~tvld~~s---------~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p  104 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSS---------NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQP  104 (326)
T ss_pred             hhhhhccceeeeehhhh---------hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCC
Confidence            33466778888999988         666666667777888899999988899999999998889999888776 78888


Q ss_pred             hhhhcccccceEEcCCCCcc
Q 037465          187 AGIGKLMNMRSLLNDNTRSL  206 (432)
Q Consensus       187 ~~i~~l~~L~~L~l~~~~~~  206 (432)
                      ...+..+.++.+++..+...
T Consensus       105 ~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  105 KSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccccCCcchhhhccCcch
Confidence            88888999999888887543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=83.85  E-value=0.015  Score=57.44  Aligned_cols=65  Identities=26%  Similarity=0.165  Sum_probs=31.5

Q ss_pred             cccCCccccEEEeCCccccc-----cchhhhcc-CCccEEecccccccc----cCChhhhcccccceEEcCCCCc
Q 037465          141 NVGKLIHLKYLNLSGLCIKR-----LPETLCEL-YNLQKLDIRWCRNLR----ELPAGIGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~-----lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~  205 (432)
                      .+..++.|..|++++|.+..     +-..+... ..|++|++..|....    .+...+.....++.++++.|..
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            34556667777777776541     11111111 335555555555222    2233344455566666666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 76  LPMSFFEFDRLRSLLIYDES-LSNL--SLNGSILPELFSKLACLRALVISQSSSFSHPGP 132
           LP S    +RLR L I     L+ L   L  +        L  L++L +           
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW--------- 192

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
             I  +P ++  L +LK L +    +  L   +  L  L++LD+R C  LR  P   G  
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 193 MNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222
             ++ L+  +  +L  +P+ I +LT L  L
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 54/285 (18%), Positives = 96/285 (33%), Gaps = 67/285 (23%)

Query: 94  ESLSNLSLNGS---ILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
                L L        P+   +L+ L+ + I             + E+P+ + +   L+ 
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA---------AGLMELPDTMQQFAGLET 131

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP 210
           L L+   ++ LP ++  L  L++L IR C  L ELP  +               +L+ + 
Sbjct: 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH--QGLVNLQSLR 189

Query: 211 IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGL----GNVSHLDEAE 266
           +  + + SL              +S   L++LK+L+ +R   +  L     ++  L   E
Sbjct: 190 LEWTGIRSL-------------PASIANLQNLKSLK-IRNSPLSALGPAIHHLPKL---E 232

Query: 267 RLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI 326
            L L     L      FG                       L      + L +     + 
Sbjct: 233 ELDLRGCTALRNYPPIFGG-------------------RAPL------KRLIL--KDCSN 265

Query: 327 F---PKWLTSLTNLRNLYLSSCFNCEHLPP-LGKLP-LEKLTLYN 366
               P  +  LT L  L L  C N   LP  + +LP    + +  
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 59/309 (19%), Positives = 97/309 (31%), Gaps = 72/309 (23%)

Query: 95  SLSNLSLNG-SILPELFSKLACLRALVISQSSSFSHPGP--------------NLITEIP 139
              NL   G + L      L+  +    +  + +                     +    
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 140 ENVGKLIH--LKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRS 197
           + +          L L  + + + P+    L +LQ + I     L ELP  + +   + +
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLET 131

Query: 198 L-LNDNTRSLKYMPIGISKLTSLRTL--------GKF--VVGGGVDGSSTCRLESLKNLQ 246
           L L  N   L+ +P  I+ L  LR L         +    +           L +L++L+
Sbjct: 132 LTLARN--PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 247 LLRECGIEGL----GNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDE 302
            L   GI  L     N+ +L   + L++ N   L  L                       
Sbjct: 190 -LEWTGIRSLPASIANLQNL---KSLKIRNSP-LSALGPAIHH----------------- 227

Query: 303 QLLKALQPPVNVEELWIVYYGGNI---FPKWLTSLTNLRNLYLSSCFNCEHLPP-LGKLP 358
             L  L      EEL +   G      +P        L+ L L  C N   LP  + +L 
Sbjct: 228 --LPKL------EELDL--RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 359 -LEKLTLYN 366
            LEKL L  
Sbjct: 278 QLEKLDLRG 286

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 33/331 (9%), Positives = 90/331 (27%), Gaps = 75/331 (22%)

Query: 76  LPMSFFEFDRLRSLLIYDESLSNLSL-------------NGSILPELFSKLACLRALVIS 122
           +  +     +L+ +   +   +  ++                     +S L  L  + + 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 123 QSSSFSHPGPNLITEIPENVGKLIHLKYLNLSG----------LCIKRLPETLCELYNLQ 172
                       +T++P+ +  L  L+ LN++               RL +       +Q
Sbjct: 500 NC--------PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 173 KLDIRWCRNLRELPA--GIGKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTLG----KF 225
              + +  NL E PA   + K++ +  L    N   ++++         L  L     + 
Sbjct: 552 IFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN--KVRHLEA-FGTNVKLTDLKLDYNQI 607

Query: 226 VVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR 285
                +        + ++ L       ++ +               +   +  +   + +
Sbjct: 608 E---EIPEDFCAFTDQVEGLGF-SHNKLKYI--------PNIFNAKSVYVMGSVDFSYNK 655

Query: 286 VVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN----IFPKWLTSLTNLRNLY 341
           +              + + +              V    N       +   + + +  + 
Sbjct: 656 I------------GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 342 LSSCFNC-EHLPP--LGKLPLEKLTLYNLKS 369
           LS+  N    +P   L          Y L +
Sbjct: 704 LSN--NLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 21/187 (11%), Positives = 52/187 (27%), Gaps = 39/187 (20%)

Query: 65  HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQS 124
               +        M      RL    +  ++++       I  +    L   +   ++  
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-- 434

Query: 125 SSFSHPGPNLITEIPENVGKLIHLKYLNLSG--------------------LCIKRLPET 164
                   N IT I + + +L  L+ +  +                        +    +
Sbjct: 435 --------NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 165 LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDN--------TRSLKYMPIGISK 215
              L +L  +++  C N+ +LP  +  L  ++SL +  N              +      
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 216 LTSLRTL 222
              ++  
Sbjct: 547 GPKIQIF 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 7e-11
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 23/156 (14%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLN-GSILPELFSKLACLRALVISQSSSFSHPGPNLI 135
              F     + ++++ +  ++++  N        +     L  + +           N +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF---------NKL 740

Query: 136 TEIPEN--VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIR------WCRNLRELPA 187
           T + ++     L +L  +++S  C    P        L+   IR        R LR+ P 
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 188 GIGKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTL 222
           GI    ++  L +  N   ++ +   +     L  L
Sbjct: 801 GITTCPSLIQLQIGSN--DIRKVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 44/336 (13%), Positives = 92/336 (27%), Gaps = 74/336 (22%)

Query: 76  LPMSFFEFDRLRSLLIYD---ESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGP 132
           LP   ++   L+SL I      S + L  + + L +       ++   +           
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY--------- 557

Query: 133 NLITEIPENV--GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIG 190
           N + E P +    K++ L  L+     ++ L         L  L + + + + E+P    
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQ-IEEIPEDFC 615

Query: 191 KLM-NMRSL-LNDNTRSLKYMP--IGISKLTSLRTLG------KFVVGGGVDGSSTCRLE 240
                +  L  + N   LKY+P       +  + ++                     +  
Sbjct: 616 AFTDQVEGLGFSHN--KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 241 SLKNLQL-------LRECGIEGLGNVSHLD--------------EAERLQLYNQQNLLCL 279
           +   + L                  +S +               + +     N   L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 280 HLEFGRVVDGEDEERRRKKEKDEQLLKALQPPV---NVEELWIVYYGGN---IFPKWLTS 333
            L F +                   L +L        +  L  +    N    FP    +
Sbjct: 734 DLRFNK-------------------LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774

Query: 334 LTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKS 369
            + L+   +    + E    L + P    T  +L  
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 44/334 (13%), Positives = 82/334 (24%), Gaps = 80/334 (23%)

Query: 61  GKVRHLGL---NFEGGAPLPMSFFEFDRLRSL------------------LIYDESLSNL 99
           G+V  L L     +G   +P +  +   L+ L                  L  D S    
Sbjct: 323 GRVTGLSLAGFGAKG--RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 100 SLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK 159
                   ++F  L   + L +S     +      +  I ++    +    +      I 
Sbjct: 381 HRIRMHYKKMF--LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 160 RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL 219
            + + +  L  LQ +              +                 +   +  S L  L
Sbjct: 439 FISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAK----QYENEELSWSNLKDL 493

Query: 220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCL 279
             +                   L N   + +           L +     LY+   L  L
Sbjct: 494 TDV------------------ELYNCPNMTQ-----------LPDF----LYDLPELQSL 520

Query: 280 HLEFGRVVDGEDEERRRKKEKDE-QLLKALQPPVNVEELWIVYYGGNIF-----PKWLTS 333
           ++   R +     +    +  D+      +Q        ++   G N          L  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQ------IFYM---GYNNLEEFPASASLQK 571

Query: 334 LTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
           +  L  L         HL   G    L  L L  
Sbjct: 572 MVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDY 604

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 33/160 (20%)

Query: 75  PLPMSFFEFDRLRSLLIYDESLSNLSLNG-SILPELFSKLACLRALVISQSSSFSHPGPN 133
           P   S  +  +L  L        +   N    L   F     L  L +           N
Sbjct: 564 PASASLQKMVKLGLL--------DCVHNKVRHLEA-FGTNVKLTDLKLDY---------N 605

Query: 134 LITEIPENVGK-LIHLKYLNLSGLCIKRLPET--LCELYNLQKLDIRWCRNLRELPAGIG 190
            I EIPE+       ++ L  S   +K +P       +Y +  +D  + + +      I 
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNIS 664

Query: 191 ------KLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
                 K +N  ++ L+ N   ++  P  + +  + + T+
Sbjct: 665 CSMDDYKGINASTVTLSYN--EIQKFPTELFATGSPISTI 702

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 40/265 (15%)

Query: 131 GPNLITEIPE-NVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAG 188
             ++  + P  ++     +  L+L+G   K R+P+ + +L  L+ L      +       
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRL 365

Query: 189 IG--KLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQ 246
            G  +L    S    +   + Y  + +     L              +    ++ +K   
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL----QDAINRNPEMKPIKKDS 421

Query: 247 L--LRECGIEGLGN-VSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQ 303
              L++  I  L N ++ + +A    +     L  ++                       
Sbjct: 422 RISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSP------------------ 459

Query: 304 LLKALQPPVNVEELWIVY-YGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPP-LGKLP-LE 360
                   V+ E+    Y           ++L +L ++ L +C N   LP  L  LP L+
Sbjct: 460 -FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 361 KLTLY--NLKSVKRVGNEFLGIEES 383
            L +      S  ++  ++  + + 
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 47/346 (13%), Positives = 92/346 (26%), Gaps = 101/346 (29%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE--NVGKLIHL 148
            L++L L+      I  +  +    +  L  S          N +  IP   N   +  +
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH---------NKLKYIPNIFNAKSVYVM 646

Query: 149 KYLNLSGLCIKRLPETL------CELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LN 200
             ++ S   I      +       +  N   + + +   +++ P  +      + ++ L+
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILS 705

Query: 201 DN------TRSLKYMPIGISKLTSLRT-------LGKFVVGGGVDGSSTCRLESLKNLQL 247
           +N        SLK           L T       L         D      L  L N+ +
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-----DDFRATTLPYLSNMDV 760

Query: 248 LRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKA 307
                                Q  N   L    +   R  +G             ++L+ 
Sbjct: 761 -SYNCFSSFPT----------QPLNSSQLKAFGIRHQRDAEGN------------RILR- 796

Query: 308 LQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNL 367
                              +P  +T+  +L  L + S         + K+  +      L
Sbjct: 797 ------------------QWPTGITTCPSLIQLQIGSN-------DIRKVDEKLTP--QL 829

Query: 368 KSVKRVGNEFLGIEESSEDDPSSSSSSSSELS------IEGCPLLE 407
             +    N  + I+ +S        +    L       I GC  L 
Sbjct: 830 YILDIADNPNISIDVTSV--CPYIEAGMYVLLYDKTQDIRGCDALG 873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 21/241 (8%), Positives = 58/241 (24%), Gaps = 45/241 (18%)

Query: 65  HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQS 124
            LG + E                S          +    + +               S  
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQ--KMRMHYQKTFVDYDPR-------EDFSDL 161

Query: 125 SSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIR------- 177
                        I ++    +    +      I  + + +  L  L++  +        
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 178 ------------WCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL--- 222
                       + +  +        L ++  +   N  +L  +P  +  L  ++ +   
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 223 ------GKFVVGGGVDGSSTCRLESLKNLQL----LRECGIE-GLGNVSHLDEAERLQLY 271
                 G+ +       +     E ++ + +    L+   +E  L  +  L     L+  
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL---GMLECL 338

Query: 272 N 272
            
Sbjct: 339 Y 339

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLN-GSILPELFSKLACLRALVISQSSSFSHPGPNLI 135
              F     L S+ +    L+ +  N      E F     L ++ +           N +
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF---------NKL 500

Query: 136 TEIPEN--VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNL------RELPA 187
           T++ ++     L +L  ++LS     + P        L+   IR  R+       RE P 
Sbjct: 501 TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 188 GIGKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTL 222
           GI    ++  L +  N   ++ +   I    ++  L
Sbjct: 561 GITLCPSLTQLQIGSN--DIRKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 19/144 (13%)

Query: 95  SLSNLSLNG---SILPELFS--KLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLK 149
            + NLS        +P +F    ++ + A+  S  +            +     K I++ 
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS-YNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 150 YLNLSGLCIKRLP-ETLCELYNLQKLDIRWCR-------NLRELPAGIGKLMNMRSL-LN 200
            +NLS   I + P E       L  +++           +L++          + S+ L 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 201 DNTRSLKYMP--IGISKLTSLRTL 222
            N   L  +      + L  L  +
Sbjct: 497 FN--KLTKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 34/343 (9%), Positives = 88/343 (25%), Gaps = 69/343 (20%)

Query: 62  KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYD--------------ESLSNLSLNGSILP 107
           K   +G        +  +     +LR   + +              E+        +   
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-D 242

Query: 108 ELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE---- 163
             +  L  L  + +             +T++P  +  L  ++ +N++        +    
Sbjct: 243 LKWDNLKDLTDVEVYNC--------PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 164 -----TLCELYNLQKLDIRWCRNLREL--PAGIGKLMNMRSL-LNDNTRSLKYMPIGISK 215
                       +Q + I +  NL+       + K+  +  L    N   L+        
Sbjct: 295 WQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN--QLEGKLPAFGS 351

Query: 216 LTSLRTLG----KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLY 271
              L +L     +      +  +     E ++NL       ++ +               
Sbjct: 352 EIKLASLNLAYNQIT---EIPANFCGFTEQVENLSF-AHNKLKYI--------PNIFDAK 399

Query: 272 NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN----IF 327
           +   +  +   +  +   + +         + L       +NV  +       N      
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGK-------NFDPLDPTPFKGINVSSI---NLSNNQISKFP 449

Query: 328 PKWLTSLTNLRNLYLSSC-FNCEHLPPLGKLPLEKLTLYNLKS 369
            +  ++ + L ++ L            L          Y L S
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 44/303 (14%), Positives = 90/303 (29%), Gaps = 43/303 (14%)

Query: 85  RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG- 143
           R+  L     SL     +G + P+   +L  L  L +       +        I  N+  
Sbjct: 82  RVTGL-----SLEGFGASGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 144 KLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNT 203
           +      ++     +   P    +  +L K  I      + +       +     +   +
Sbjct: 136 EQKQKMRMHYQKTFVDYDP--REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ-IGQLS 192

Query: 204 RSLKYMPIGISKLTSLRTLG----KFVVGGGVDGSSTCRLESLKNLQLLRE--CGIEGLG 257
            ++ ++   + +LT LR        FV     +       E+ +  Q  +      + L 
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFV---AENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 258 NVSHLDEAERLQ-------LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP 310
           +++ ++             L     +  +++   R + GE           +   +AL  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL---------KDDWQALAD 300

Query: 311 PVNVEELWIVYYGGNIF-----PKWLTSLTNLRNLYLSSC-FNCEHLPPLGKLP-LEKLT 363
               E++ I+Y G N          L  +  L  L           LP  G    L  L 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLN 359

Query: 364 LYN 366
           L  
Sbjct: 360 LAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 42/320 (13%), Positives = 89/320 (27%), Gaps = 68/320 (21%)

Query: 85  RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGK 144
           +   + + D  +  LS N + + +   +L  LR   +  S          + E      +
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS--------PFVAENICEAWE 228

Query: 145 LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDN- 202
             + +Y                 L +L  +++  C NL +LP  +  L  M+ + +  N 
Sbjct: 229 NENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 203 ------TRSLKYMPIGISKLTSLRTLG----KFVVGGGVDGSSTCRLESLKNLQL----L 248
                  +              ++ +               +S  +++ L  L+     L
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP--VETSLQKMKKLGMLECLYNQL 342

Query: 249 RECGIEGLGNVSHLDEAERLQL-YNQ------------QNLLCLHLE---FGRVVDGEDE 292
               +   G+   L     L L YNQ            + +  L         + +  D 
Sbjct: 343 EGK-LPAFGSEIKL---ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 293 ERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF---PKWLTSLTNLRNLYLSSCFNCE 349
           +           +  +   ++     I    G  F           N+ ++ LS+     
Sbjct: 399 KS----------VSVMSA-IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS 446

Query: 350 HLPP--LGKLP-LEKLTLYN 366
             P         L  + L  
Sbjct: 447 KFPKELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 95  SLSNLSLNG---SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYL 151
            L  + L+    S  P      + L+   I             + E PE +     L  L
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN--RTLREWPEGITLCPSLTQL 571

Query: 152 NLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLL 199
            +    I+++ E +    N+  LDI+   N+    + +   +     +
Sbjct: 572 QIGSNDIRKVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 23/247 (9%), Positives = 56/247 (22%), Gaps = 42/247 (17%)

Query: 133 NLITEIPENVGKLIHLKYLNLS-----GLCIKRLPETLCELYNLQKLDIRWCRNLRELPA 187
                +P+ +G+L  L+ L L             P+ +    + ++         +    
Sbjct: 92  GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 188 GIGKL--MNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNL 245
              +    ++     ++    K +            +G+          +  RL  L+  
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQF 211

Query: 246 QLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL 305
             +                 E       Q      L++                     L
Sbjct: 212 Y-MGNSPFVAENICEAW---ENENSEYAQQYKTEDLKWDN-------------------L 248

Query: 306 KALQPPVNVEELWIVYYGGNI---FPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKL 362
           K L          +  Y        P +L +L  ++ + ++          L        
Sbjct: 249 KDLT--------DVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALA 299

Query: 363 TLYNLKS 369
                + 
Sbjct: 300 DAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 35/278 (12%), Positives = 66/278 (23%), Gaps = 84/278 (30%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN--VGKLIHL 148
            L++L+L       I          +  L  +          N +  IP       +  +
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAH---------NKLKYIPNIFDAKSVSVM 404

Query: 149 KYLNLSG--------LCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL- 198
             ++ S              L  T  +  N+  +++     + + P  +      + S+ 
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSIN 463

Query: 199 LNDN------TRSLKYMPIGISKLTSLRT--LGKFVVGGGVDGSSTCRLESLKNLQLLRE 250
           L  N        SLK           L +  L    +    D      L  L  + L   
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL-SY 522

Query: 251 CGIEGL----GNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLK 306
                      N S L   +   + NQ++                               
Sbjct: 523 NSFSKFPTQPLNSSTL---KGFGIRNQRDAQGNRTL------------------------ 555

Query: 307 ALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSS 344
                                P+ +T   +L  L + S
Sbjct: 556 -----------------REW-PEGITLCPSLTQLQIGS 575

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 50/252 (19%), Positives = 82/252 (32%), Gaps = 46/252 (18%)

Query: 132 PNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGK 191
              I +I             NL    +     T  EL ++ ++      +++ +  GI  
Sbjct: 8   STPIKQI-FPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQ-GIQY 63

Query: 192 LMNMRSL-LNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL-- 248
           L N+  L LN N   L  +   ++ L +L  L  F+    +       L+ LK L+ L  
Sbjct: 64  LPNVTKLFLNGN--KLTDIK-PLTNLKNLGWL--FLDENKI--KDLSSLKDLKKLKSLSL 116

Query: 249 RECGIEGLGNVSHLDEAERLQLYNQQ-----------NLLCLHLEFGRVVDGEDEERRRK 297
              GI  +  + HL + E L L N +            L  L LE  ++ D         
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--------- 167

Query: 298 KEKDEQLLKALQPPVNVEELWIVYYGGNIFPKW--LTSLTNLRNLYLSSCFNCEHLPPLG 355
                  +  L     ++ L++     N       L  L NL  L L S           
Sbjct: 168 -------IVPLAGLTKLQNLYL---SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 356 KLPLEKLTLYNL 367
              +   T+ N 
Sbjct: 218 SNLVVPNTVKNT 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 50/281 (17%), Positives = 102/281 (36%), Gaps = 58/281 (20%)

Query: 94  ESLSNLSLNGSILPEL--FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYL 151
                  L  + + ++    +L  +  LV++            +  I   +  L +L+YL
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAG---------EKVASIQG-IEYLTNLEYL 71

Query: 152 NLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYMP 210
           NL+G  I  +   L  L  L  L I     + ++ A +  L N+R L LN++  ++  + 
Sbjct: 72  NLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA-LQNLTNLRELYLNED--NISDIS 126

Query: 211 IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLR--ECGIEGLGNVSHLDEAERL 268
             ++ LT + +L    +G   + S    L ++  L  L   E  ++ +  +++L      
Sbjct: 127 -PLANLTKMYSLN---LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL------ 176

Query: 269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF- 327
                 +L  L L + ++ D                +  L    ++          N   
Sbjct: 177 -----TDLYSLSLNYNQIED----------------ISPLASLTSLHYFTA---YVNQIT 212

Query: 328 -PKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
               + ++T L +L + +      L PL  L  L  L +  
Sbjct: 213 DITPVANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 50/295 (16%), Positives = 94/295 (31%), Gaps = 72/295 (24%)

Query: 98  NLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC 157
            +  N          L  LR L +++         + I++I   +  L  +  LNL    
Sbjct: 94  YIGTNKITDISALQNLTNLRELYLNE---------DNISDIS-PLANLTKMYSLNLGANH 143

Query: 158 IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNT-RSLKYMPIGISK 215
                  L  +  L  L +   + ++++   I  L ++ SL LN N    +      ++ 
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDI----SPLAS 197

Query: 216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE--------CGIEGLGNVSHLDEAER 267
           LTSL              +    +  + N+  L            +  L N+S L     
Sbjct: 198 LTSLHYF-------TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQL---TW 247

Query: 268 LQLYNQQ-----------NLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEE 316
           L++   Q            L  L++   ++ D                +  L     +  
Sbjct: 248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISD----------------ISVLNNLSQLNS 291

Query: 317 LWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
           L++     N       + +  LTNL  L+LS   +   + PL  L  ++     N
Sbjct: 292 LFL---NNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFAN 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 27/190 (14%)

Query: 44  LWLEIDGNKESVINFFGGKVRHL------GLNFEGGAPLPMSFFEFDRLRSLLIYDESLS 97
           L L ++GN  + I                G          +       L        +  
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG-----TFE 236

Query: 98  NLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYLNLSGL 156
           ++     I P +F  L  +    I+          +    I  N       L+ L+L+  
Sbjct: 237 DMDDE-DISPAVFEGLCEMSVESIN----LQK---HYFFNISSNTFHCFSGLQELDLTAT 288

Query: 157 CIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL----LNDNTRSLKYMPIG 212
            +  LP  L  L  L+KL +   +    L        N  SL    +  NT+ L+     
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANK-FENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 213 ISKLTSLRTL 222
           +  L +LR L
Sbjct: 346 LENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 60/350 (17%), Positives = 112/350 (32%), Gaps = 65/350 (18%)

Query: 83  FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV 142
           F+ L  + +   +L       +I    F   + L+ L ++            ++E+P  +
Sbjct: 248 FEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTA---------THLSELPSGL 297

Query: 143 GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSL-L 199
             L  LK L LS    + L + +     +L  L I+      EL  G +  L N+R L L
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 200 NDNT-RSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL--RECGIEGL 256
           + +   +     + +  L+ L++L   +         T   +    L+LL      ++  
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSL--NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 257 GNVSHLDEAERLQL----YNQ------------QNLLCLHLEFGRVVDGEDEERRRKKEK 300
              S       L++    ++               L  L+L+                + 
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF-----------PKG 464

Query: 301 DEQLLKALQPPVNVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSS-CFNCEHLPPLG 355
           + Q   +LQ    +E L +          I     TSL  + ++ LS        +  L 
Sbjct: 465 NIQKTNSLQTLGRLEILVL---SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 356 KLPLEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL 405
            L    L L +        N    I  S         S    +++   PL
Sbjct: 522 HLKGIYLNLAS--------NHISIILPSLL----PILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 21/133 (15%)

Query: 95  SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYLNL 153
           +  NL LN  I   L +   CL          FS    N++  I      +LI+L +L+L
Sbjct: 18  NCENLGLN-EIPGTLPNSTECL---------EFSF---NVLPTIQNTTFSRLINLTFLDL 64

Query: 154 SGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSLKYMP 210
           +   I  +  +T    + L  L +     L  +          ++ L        +  + 
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQT--GISSID 121

Query: 211 IG-ISKLTSLRTL 222
              +    +L +L
Sbjct: 122 FIPLHNQKTLESL 134

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 23/146 (15%)

Query: 83  FDRLRSLLIYDESLSNLSLN--GSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140
           F  LR L    E L  LS N   +I    F+ LA L  L +           N +T IP 
Sbjct: 84  FKHLRHL----EIL-QLSRNHIRTIEIGAFNGLANLNTLELFD---------NRLTTIPN 129

Query: 141 NV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRS 197
                L  LK L L    I+ +P      + +L++LD+   + L  +  G    L N+R 
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 198 L-LNDNTRSLKYMPIGISKLTSLRTL 222
           L L     +L+ +P  ++ L  L  L
Sbjct: 190 LNLAMC--NLREIP-NLTPLIKLDEL 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 53/248 (21%), Positives = 87/248 (35%), Gaps = 71/248 (28%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIG 190
           N I  I  N    L HL+ L LS   I+ +       L NL  L++   R L  +P G  
Sbjct: 74  NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGA- 131

Query: 191 KLMNMRSL----LNDNTRSLKYMPIGI-SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNL 245
             + +  L    L +N   ++ +P    +++ SLR L                L  LK L
Sbjct: 132 -FVYLSKLKELWLRNN--PIESIPSYAFNRIPSLRRL---------------DLGELKRL 173

Query: 246 QLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL 305
             + E   EGL N+ +L+      L      L                         + +
Sbjct: 174 SYISEGAFEGLSNLRYLN------LAM--CNL-------------------------REI 200

Query: 306 KALQPPVNVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP- 358
             L P + ++EL +    GN    I P     L +L+ L++      + +       L  
Sbjct: 201 PNLTPLIKLDELDL---SGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQS 256

Query: 359 LEKLTLYN 366
           L ++ L +
Sbjct: 257 LVEINLAH 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 58/291 (19%), Positives = 105/291 (36%), Gaps = 60/291 (20%)

Query: 95  SLSNLSLNGSILPEL--FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLN 152
            L ++ +N + + ++   + L  L  L +           N IT+I   +  L +L  L 
Sbjct: 91  KLVDILMNNNQIADITPLANLTNLTGLTLFN---------NQITDID-PLKNLTNLNRLE 140

Query: 153 LSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYMPI 211
           LS   I  +   L  L +LQ+L       + +L   +  L  +  L ++ N   +  +  
Sbjct: 141 LSSNTISDISA-LSGLTSLQQLSFG--NQVTDLKP-LANLTTLERLDISSN--KVSDIS- 193

Query: 212 GISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL--RECGIEGLGNVSHLDEAERLQ 269
            ++KLT+L +L        +   +   L  L NL  L      ++ +G ++ L     L 
Sbjct: 194 VLAKLTNLESL--IATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249

Query: 270 LYNQQ-----------NLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELW 318
           L N Q            L  L L   ++ +                +  L     +  L 
Sbjct: 250 LANNQISNLAPLSGLTKLTELKLGANQISN----------------ISPLAGLTALTNLE 293

Query: 319 IVYYGGNIFPKW--LTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
           +     N       +++L NL  L L    N   + P+  L  L++L  YN
Sbjct: 294 L---NENQLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 57/293 (19%), Positives = 102/293 (34%), Gaps = 64/293 (21%)

Query: 95  SLSNLSLNGSILPEL--FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLN 152
           +L+ ++ + + L ++     L  L  ++++          N I +I   +  L +L  L 
Sbjct: 69  NLTQINFSNNQLTDITPLKNLTKLVDILMNN---------NQIADIT-PLANLTNLTGLT 118

Query: 153 LSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIG 212
           L    I  +   L  L NL +L++     + ++ A +  L +++ L   N  +       
Sbjct: 119 LFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQVT---DLKP 172

Query: 213 ISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE-----CGIEGLGNVSHLDEAER 267
           ++ LT+L  L        +  +    +  L  L  L         I  +  +  L   + 
Sbjct: 173 LANLTTLERLD-------ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225

Query: 268 LQLY-----------NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEE 316
           L L            +  NL  L L   ++ +                L  L     + E
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISN----------------LAPLSGLTKLTE 269

Query: 317 LWIVYYGGNIFPKW--LTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
           L +   G N       L  LT L NL L+     E + P+  L  L  LTLY 
Sbjct: 270 LKL---GANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYF 318

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 54/291 (18%), Positives = 89/291 (30%), Gaps = 80/291 (27%)

Query: 94  ESLSNLSLNGSILPEL--FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYL 151
                  L  + + +    + L  +  L   +           I  I + V  L +L  +
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADR---------LGIKSI-DGVEYLNNLTQI 73

Query: 152 NLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYMP 210
           N S   +  +   L  L  L  + +     + ++   +  L N+  L L +N        
Sbjct: 74  NFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-------- 122

Query: 211 IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL 270
               ++T +  L                L +L  L+ L    I  +  +S L   ++L  
Sbjct: 123 ----QITDIDPLKN--------------LTNLNRLE-LSSNTISDISALSGLTSLQQLSF 163

Query: 271 YNQ----------QNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIV 320
            NQ            L  L +   +V D                +  L    N+E L   
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSD----------------ISVLAKLTNLESLIA- 206

Query: 321 YYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
               N    I P  L  LTNL  L L+     + +  L  L  L  L L N
Sbjct: 207 --TNNQISDITP--LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLAN 252

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 95  SLSNLSLNGSILPEL--FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLN 152
           +L+ L+L  + + ++   S L  L+ L             N ++++   +  L ++ +L+
Sbjct: 310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYN---------NKVSDVSS-LANLTNINWLS 359

Query: 153 LSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIG 212
                I  L   L  L  + +L +         P      +++ + + + T      P  
Sbjct: 360 AGHNQISDLTP-LANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVKNVT-GALIAPAT 416

Query: 213 ISKLTSLRTL 222
           IS   S    
Sbjct: 417 ISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 59/295 (20%), Positives = 99/295 (33%), Gaps = 69/295 (23%)

Query: 95  SLSNLSLNGSIL-PELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNL 153
           SL  LS    +   +  + L  L  L IS          N +++I   + KL +L+ L  
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISS---------NKVSDIS-VLAKLTNLESLIA 206

Query: 154 SGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYMPIG 212
           +   I  +   L  L NL +L +   + L+++   +  L N+  L L +N   +  +   
Sbjct: 207 TNNQISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANN--QISNLA-P 260

Query: 213 ISKLTSLRTLGKFVVGGGVDG---SSTCRLESLKNLQLLR--ECGIEGLGNVSHLDEAER 267
           +S LT L  L        +     S+   L  L  L  L   E  +E +  +S+L     
Sbjct: 261 LSGLTKLTELK-------LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 313

Query: 268 LQLYNQQ-----------NLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEE 316
           L LY               L  L     +V D                + +L    N+  
Sbjct: 314 LTLYFNNISDISPVSSLTKLQRLFFYNNKVSD----------------VSSLANLTNINW 357

Query: 317 LWIVYYGGNIFPKW--LTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKS 369
           L     G N       L +LT +  L L+              P+      ++ +
Sbjct: 358 LSA---GHNQISDLTPLANLTRITQLGLNDQ-------AWTNAPVNYKANVSIPN 402

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 83  FDRLRSLLIYDESLSNLSLN--GSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140
           F  L  L    E L  L  N    I    F+ LA L  L +           N +T IP 
Sbjct: 95  FRHLHHL----EVL-QLGRNSIRQIEVGAFNGLASLNTLELFD---------NWLTVIPS 140

Query: 141 NV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRS 197
                L  L+ L L    I+ +P      + +L +LD+   + L  +  G    L N++ 
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 198 L-LNDNTRSLKYMPIGISKLTSLRTL 222
           L L     ++K MP  ++ L  L  L
Sbjct: 201 LNLGMC--NIKDMP-NLTPLVGLEEL 223

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 67/246 (27%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI- 189
           N I  I  +    L HL+ L L    I+++       L +L  L++     L  +P+G  
Sbjct: 85  NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF 143

Query: 190 GKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQL 247
             L  +R L L +N   ++ +P    +++ SL  L                L  LK L+ 
Sbjct: 144 EYLSKLRELWLRNN--PIESIPSYAFNRVPSLMRL---------------DLGELKKLEY 186

Query: 248 LRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKA 307
           + E   EGL N+ +L+      L      +                         + +  
Sbjct: 187 ISEGAFEGLFNLKYLN------LGM--CNI-------------------------KDMPN 213

Query: 308 LQPPVNVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LE 360
           L P V +EEL +    GN    I P     L++L+ L++ +      +       L  L 
Sbjct: 214 LTPLVGLEELEM---SGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLV 269

Query: 361 KLTLYN 366
           +L L +
Sbjct: 270 ELNLAH 275

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 28/140 (20%)

Query: 95  SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLS 154
            ++ L +  + L  L +    LR L +S          N +T +P     L+ L   +  
Sbjct: 62  HITTLVIPDNNLTSLPALPPELRTLEVSG---------NQLTSLPVLPPGLLELSIFSNP 112

Query: 155 GLCIKRLPETLCELY--------------NLQKLDIRWCRNLRELPAGIGKLMNMRSLLN 200
              +  LP  LC+L+               LQ+L +   + L  LPA   +L  +     
Sbjct: 113 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLW--AY 169

Query: 201 DNTRSLKYMPIGISKLTSLR 220
           +N   L  +P+  S L  L 
Sbjct: 170 NN--QLTSLPMLPSGLQELS 187

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
           + +T +P+ +    H+  L +    +  LP        L+ L++   + L  LP     L
Sbjct: 50  SGLTTLPDCLPA--HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVLPPGL 103

Query: 193 MNMRSLLNDNTR------SLKYMPIGISKLTSL 219
           + +    N  T        L  + I  ++LTSL
Sbjct: 104 LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 147 HLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRS 205
               LN+    +  LP+ L    ++  L I    NL  LPA   +L   R+L ++ N   
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDN-NLTSLPALPPEL---RTLEVSGN--Q 92

Query: 206 LKYMPIGISKLTSLRTLG 223
           L  +P+    L  L    
Sbjct: 93  LTSLPVLPPGLLELSIFS 110

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 62  KVRHLGLNFEGGAPLPMSFFEFDRLRSLL---IYDESLSNLSLNG----SILPELFSKLA 114
           K++ L L+             F    +     +    +    L+     ++L  +FS   
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299

Query: 115 CLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYLNLSGLCIKRLPETLCE-LYNLQ 172
            L  L ++Q         N I +I +N    L HL  LNLS   +  +   + E L  L+
Sbjct: 300 DLEQLTLAQ---------NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 173 KLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
            LD+ +   +R L       L N++ L L+ N   LK +P GI  +LTSL+ +
Sbjct: 351 VLDLSYNH-IRALGDQSFLGLPNLKELALDTN--QLKSVPDGIFDRLTSLQKI 400

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 30/134 (22%), Positives = 45/134 (33%), Gaps = 19/134 (14%)

Query: 98  NLSLNG--SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYLNLS 154
           +LSLN    +    FS+L  L+ L + Q              I  N    L  L  L L 
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQ--------TPGLVIRNNTFRGLSSLIILKLD 87

Query: 155 GLCIKRLPE-TLCELYNLQKLDIRWCR-NLRELPAGI-GKLMNMRSL-LNDNT-RSLKYM 209
                +L       L NL+ L +  C  +   L       L ++  L L DN  + ++  
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-- 145

Query: 210 PIGI-SKLTSLRTL 222
           P      +     L
Sbjct: 146 PASFFLNMRRFHVL 159

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 37/157 (23%), Positives = 53/157 (33%), Gaps = 33/157 (21%)

Query: 82  EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141
              RLR  L  D     L LN   L  L      L +LV S          N +TE+PE 
Sbjct: 61  AVSRLRDCL--DRQAHELELNNLGLSSLPELPPHLESLVASC---------NSLTELPEL 109

Query: 142 VGKLIHLKYLNLSGLCIKRLPETLCELY----------------NLQKLDIRWCRNLREL 185
              L  L   N +   +  LP  L  L                  L+ +D+     L++L
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKL 168

Query: 186 PAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222
           P     L  +     +N   L+ +P  +  L  L  +
Sbjct: 169 PDLPPSLEFIA--AGNN--QLEELP-ELQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 15/123 (12%)

Query: 95  SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLS 154
            L+ +  + + L +L      L ++V            N++ E+PE +  L  L  +   
Sbjct: 196 FLTAIYADNNSLKKLPDLPLSLESIVAGN---------NILEELPE-LQNLPFLTTIYAD 245

Query: 155 GLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGIS 214
              +K LP+    L  L   D      L +LP     L  +    N  +  L  +P  + 
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDNY----LTDLPELPQSLTFLDVSENIFS-GLSELPPNLY 300

Query: 215 KLT 217
            L 
Sbjct: 301 YLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 43/260 (16%), Positives = 75/260 (28%), Gaps = 60/260 (23%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKR-LPETLCELYNLQKLDIRWCR----------- 180
           + +TE+P     +        +    +R  P    E   +    +R C            
Sbjct: 21  SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80

Query: 181 -NLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRL 239
             L  LP     L ++    + N  SL  +P     L SL              ++   L
Sbjct: 81  LGLSSLPELPPHLESLV--ASCN--SLTELPELPQSLKSLLVD----------NNNLKAL 126

Query: 240 ESL-KNLQLL--RECGIEGLGNVSHLDEAERLQLYNQQ---------NLLCLHLEFGRVV 287
             L   L+ L      +E L  + +    + + + N           +L  +     +  
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ-- 184

Query: 288 DGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFN 347
                            L+ L    N+  L  +Y   N   K      +L ++   +   
Sbjct: 185 -----------------LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN-I 226

Query: 348 CEHLPPLGKLP-LEKLTLYN 366
            E LP L  LP L  +   N
Sbjct: 227 LEELPELQNLPFLTTIYADN 246

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 57/314 (18%), Positives = 95/314 (30%), Gaps = 59/314 (18%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN---VGKLIH 147
           +L  L L+     S       +L  L+ L++S          N I  +      +     
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSN---------NKIQALKSEELDIFANSS 172

Query: 148 LKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL----LNDN 202
           LK L LS   IK   P     +  L  L +   +    L   +   +   S+    L+++
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 203 TRSLKYMPIGI---SKLTSLRTL----GKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG 255
              L           K T+L  L            V   S   L  L+    L    I+ 
Sbjct: 233 --QLSTTSNTTFLGLKWTNLTMLDLSYNNL---NVVGNDSFAWLPQLEYFF-LEYNNIQH 286

Query: 256 LGNVSHLDEAERLQ-LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNV 314
           L +   L     ++ L  +++     +    +   +D               + Q    +
Sbjct: 287 LFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF--------------SFQWLKCL 331

Query: 315 EELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSV 370
           E L +     N    I     T L NL+ L LS+  +   L  L       L    L  +
Sbjct: 332 EHLNM---EDNDIPGIKSNMFTGLINLKYLSLSN--SFTSLRTLTNETFVSLAHSPLHIL 386

Query: 371 KRVGNEFLGIEESS 384
               N+   IE  +
Sbjct: 387 NLTKNKISKIESDA 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 54/311 (17%), Positives = 100/311 (32%), Gaps = 57/311 (18%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLK 149
            L  L+L       +  + F+    L  L +           N I +I  N   K  +L 
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS---------NSIQKIKNNPFVKQKNLI 124

Query: 150 YLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL----LNDNTR 204
            L+LS   +      T  +L NLQ+L +     ++ L +    +    SL    L+ N  
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN-- 181

Query: 205 SLKYMPIG-ISKLTSLRTLG-KFVVGGGVDGSSTCRLESLKNLQLL--RECGIEGLGNVS 260
            +K    G    +  L  L    V  G       C   +  +++ L      +    N +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 261 HLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIV 320
                         NL  L L +  +    ++              +      +E  ++ 
Sbjct: 242 -------FLGLKWTNLTMLDLSYNNLNVVGND--------------SFAWLPQLEYFFL- 279

Query: 321 YYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLPLEKLTLYNLKSVKRV--- 373
               N    +F   L  L N+R L L   F  + +       ++  +   LK ++ +   
Sbjct: 280 --EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 374 GNEFLGIEESS 384
            N+  GI+ + 
Sbjct: 338 DNDIPGIKSNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 61/335 (18%), Positives = 109/335 (32%), Gaps = 78/335 (23%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLAC--LRALVISQSSSFSHPGPNL 134
           P  F    RL  L      L+N+ L  S+  +L  +LA   +R L +S          + 
Sbjct: 188 PGCFHAIGRLFGL-----FLNNVQLGPSLTEKLCLELANTSIRNLSLSN---------SQ 233

Query: 135 ITEIPENVG---KLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIG 190
           ++          K  +L  L+LS   +  +  ++   L  L+   + +          + 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 191 KLMNMRSL-LNDNTRSLKYMPIGISKLTS-----LRTLGKFVVGG----GVDGSSTCRLE 240
            L N+R L L  +          + K+       L+ L    +      G+  +    L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 241 SLKNLQL------LRECGIEGLGNVSH------------LDEAERLQLYNQQNLLCLHL- 281
           +LK L L      LR    E   +++H            + + E        +L  L L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 282 --EFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN----IFPKWLTSLT 335
             E G+ + G+                  +   N+ E+++     N    +       + 
Sbjct: 414 LNEIGQELTGQ----------------EWRGLENIFEIYL---SYNKYLQLTRNSFALVP 454

Query: 336 NLRNLYLSSCF--NCEHLP-PLGKLP-LEKLTLYN 366
           +L+ L L      N +  P P   L  L  L L N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 18/161 (11%)

Query: 69  NFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNG--SILPELFSKLACLRALVISQSSS 126
             +     P  F     L  L        +LS N   +I  ++   L  L  L +  ++ 
Sbjct: 465 ALKNVDSSPSPFQPLRNLTIL--------DLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 127 FSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLREL 185
                          +  L HL  LNL       +  E   +L+ L+ +D+    NL  L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTL 575

Query: 186 PAGI-GKLMNMRSL-LNDNTRSLKYMPIGI--SKLTSLRTL 222
           PA +    ++++SL L  N   +  +   +      +L  L
Sbjct: 576 PASVFNNQVSLKSLNLQKN--LITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAG-I 189
           N +  +P     +   L  L++    I +L PE   +L  L+ L+++    L +L     
Sbjct: 35  NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTF 93

Query: 190 GKLMNMRSL-LNDNT-RSLKYMPIGISKLTSLRTL 222
               N+  L L  N+ + +K       K  +L TL
Sbjct: 94  AFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 38/268 (14%), Positives = 86/268 (32%), Gaps = 56/268 (20%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAG-IG 190
             +T++P+++    ++  LNL+   ++RL          L  LD+ +   + +L      
Sbjct: 14  LKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQ 70

Query: 191 KLMNMRSL-LNDNTRSLKYMPIG-ISKLTSLRTLG----KFVVGGGVDGSSTCRLESLKN 244
           KL  ++ L L  N   L  +     +  T+L  L            +  +   + ++L  
Sbjct: 71  KLPMLKVLNLQHN--ELSQLSDKTFAFCTNLTELHLMSNSIQ---KIKNNPFVKQKNLIT 125

Query: 245 LQL----LRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300
           L L    L    +     + +L   + L L N  N +                    +  
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENL---QELLLSN--NKI--------------------QAL 160

Query: 301 DEQLLKALQPPVNVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGK 356
             + L           L  +    N      P    ++  L  L+L++      L     
Sbjct: 161 KSEELDIFANS----SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE--- 213

Query: 357 LPLEKLTLYNLKSVKRVGNEFLGIEESS 384
               +L   +++++    ++      ++
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTT 241

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 43/184 (23%)

Query: 83  FDRLRSLLIYDESLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138
           +  L  L       S L L G    S+    FS L+ L+ LV  +           +  +
Sbjct: 72  YQSLSHL-------STLILTGNPIQSLALGAFSGLSSLQKLVAVE---------TNLASL 115

Query: 139 PENV-GKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAGI-GKLMN 194
                G L  LK LN++   I+          L NL+ LD+   + ++ +       L  
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174

Query: 195 MRSL-----LNDNTRSLKYMPIGISKLTSLRTLG------KFVVGGGVDGSSTCRLESLK 243
           M  L     L+ N   + ++  G  K   L+ L       K V  G  D     RL SL+
Sbjct: 175 MPLLNLSLDLSLN--PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD-----RLTSLQ 227

Query: 244 NLQL 247
            + L
Sbjct: 228 KIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRN-LRELPAGI 189
           N +  +          L+ L+LS   I+ + +     L +L  L +    N ++ L  G 
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL--TGNPIQSLALGA 95

Query: 190 -GKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
              L +++ L   +   +L  +       L +L+ L
Sbjct: 96  FSGLSSLQKLVAVET--NLASLENFPIGHLKTLKEL 129

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 57/320 (17%), Positives = 89/320 (27%), Gaps = 105/320 (32%)

Query: 62  KVRHLGL---NFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRA 118
            +  L L   +  G      S      L+ L     ++S+ +L+         KL  L  
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL-----NVSSNTLDFPGKVSGGLKLNSLEV 155

Query: 119 LVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLD-- 175
           L +S ++S S                   LK+L +SG  I   +   +    NL+ LD  
Sbjct: 156 LDLS-ANSISGANVVGWVLS----DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 176 ----------IRWCRNLREL-----------PAGIGKLMNMRSL-LNDNTRSLKYMPIGI 213
                     +  C  L+ L              I     ++ L ++ N       PI  
Sbjct: 209 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV---GPIPP 265

Query: 214 SKLTSLRTLG----KFVVGGGVDGSSTCRLESLKNLQLLRECGIEG-----LGNVSHLDE 264
             L SL+ L     KF   G +    +   ++L  L  L      G      G+ S L  
Sbjct: 266 LPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLD-LSGNHFYGAVPPFFGSCSLL-- 320

Query: 265 AERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGG 324
            E L L +  N                                                G
Sbjct: 321 -ESLALSS--NNF---------------------------------------------SG 332

Query: 325 NIFPKWLTSLTNLRNLYLSS 344
            +    L  +  L+ L LS 
Sbjct: 333 ELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 63/330 (19%), Positives = 105/330 (31%), Gaps = 87/330 (26%)

Query: 64  RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQ 123
               LN      +  S      L SL      LSN  +NGS+    F   A L +L +S 
Sbjct: 58  SSKPLNVGFS-AVSSSLLSLTGLESL-----FLSNSHINGSV-SG-FKCSASLTSLDLS- 108

Query: 124 SSSFSHPGPNLITEIPENVGKLIHLKYLNLSG--LCIKRLPETLCELYNLQKLDIRWCRN 181
            +S S P          ++G    LK+LN+S   L          +L +L+ LD+    +
Sbjct: 109 RNSLSGPVTT-----LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-S 162

Query: 182 LR-ELPAGIGKLMNMRSL----LNDNTRSLKYMPIGISKLTSLRTL--------GKFVVG 228
           +      G         L    ++ N  S     + +S+  +L  L              
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGI--- 216

Query: 229 GGVDGSSTCRLESLKNLQLLRECGIEG-----LGNVSHLDEAERLQLYNQQNLLCLHLEF 283
                       +L++L +     + G     +   + L   + L + +  N        
Sbjct: 217 -----PFLGDCSALQHLDI-SGNKLSGDFSRAISTCTEL---KLLNISS--NQF-----V 260

Query: 284 GRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF----PKWLT-SLTNLR 338
           G +                       PP+ ++ L  +    N F    P +L+ +   L 
Sbjct: 261 GPI-----------------------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 339 NLYLSSCFNCEHLPP-LGKLP-LEKLTLYN 366
            L LS       +PP  G    LE L L +
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 44/191 (23%)

Query: 62  KVRHLGL---NFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRA 118
            +  L L   +F G   +P  F     L SL     +LS+ + +G +  +   K+  L+ 
Sbjct: 295 TLTGLDLSGNHFYG--AVPPFFGSCSLLESL-----ALSSNNFSGELPMDTLLKMRGLKV 347

Query: 119 LVISQ-------SSSFSHPGPNLIT----------EIPENVGK--LIHLKYL-----NLS 154
           L +S          S ++   +L+T           I  N+ +     L+ L       +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 155 GLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSL-LNDNTRSLK-YMPI 211
           G    ++P TL     L  L + +   L   +P+ +G L  +R L L  N   L+  +P 
Sbjct: 408 G----KIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLN--MLEGEIPQ 460

Query: 212 GISKLTSLRTL 222
            +  + +L TL
Sbjct: 461 ELMYVKTLETL 471

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 39/187 (20%), Positives = 60/187 (32%), Gaps = 32/187 (17%)

Query: 69  NFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFS 128
             EG   +P        L +L      L    L G I P   S    L  + +S      
Sbjct: 453 MLEG--EIPQELMYVKTLETL-----ILDFNDLTGEI-PSGLSNCTNLNWISLSN----- 499

Query: 129 HPGPNLIT-EIPENVGKLIHLKYL-----NLSGLCIKRLPETLCELYNLQKLDIRWCRNL 182
               N +T EIP+ +G+L +L  L     + SG     +P  L +  +L  LD+    NL
Sbjct: 500 ----NRLTGEIPKWIGRLENLAILKLSNNSFSG----NIPAELGDCRSLIWLDLN--TNL 549

Query: 183 --RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE 240
               +PA + K     +  N                      G  +   G+      RL 
Sbjct: 550 FNGTIPAAMFKQSGKIA-ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 241 SLKNLQL 247
           +     +
Sbjct: 609 TRNPCNI 615

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 27/115 (23%)

Query: 68  LNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSF 127
           L F+G                      ++++    G      F     +  L +S     
Sbjct: 594 LEFQG--IRSEQLNRLSTRNPC-----NITSRVYGGHT-SPTFDNNGSMMFLDMSY---- 641

Query: 128 SHPGPNLIT-EIPENVGKLIHLKYLNLS-----GLCIKRLPETLCELYNLQKLDI 176
                N+++  IP+ +G + +L  LNL      G     +P+ + +L  L  LD+
Sbjct: 642 -----NMLSGYIPKEIGSMPYLFILNLGHNDISG----SIPDEVGDLRGLNILDL 687

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 22/153 (14%)

Query: 79  SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138
              E  ++ ++ I    +    L    L  ++S L  ++ + +           + +  +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVEN---------SKVFLV 325

Query: 139 PENVGK-LIHLKYLNLSGLCIKRLPETLCE----LYNLQKLDIRWCRNLRELPAGIGKLM 193
           P +  + L  L++L+LS   +               +LQ L +     LR +      L+
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILL 384

Query: 194 NMRSL----LNDNTRSLKYMPIGISKLTSLRTL 222
            +++L    ++ N  +   MP        +R L
Sbjct: 385 TLKNLTSLDISRN--TFHPMPDSCQWPEKMRFL 415

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 83  FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV 142
              L+SL   D S + +                L+ LV+SQ         N +  + +  
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ---------NHLRSMQKTG 380

Query: 143 G---KLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL- 198
                L +L  L++S      +P++      ++ L++     +R +   I     +  L 
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLD 437

Query: 199 LNDNTRSLKYMPIGISKLTSL 219
           +++N  +L    + + +L  L
Sbjct: 438 VSNN--NLDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 45/274 (16%), Positives = 90/274 (32%), Gaps = 34/274 (12%)

Query: 83  FDRLRSLLIYDESLSNLSLN--GSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140
           F  L SL    E L +LS N   S+    F  L+ L+ L +           N    +  
Sbjct: 70  FYSLGSL----EHL-DLSDNHLSSLSSSWFGPLSSLKYLNLMG---------NPYQTLGV 115

Query: 141 N--VGKLIHLKYLNLSGLC-IKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNM 195
                 L +L+ L +  +     +       L +L +L+I+   +LR   +  +  + ++
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDI 174

Query: 196 RSL-LNDNTRSLKYMPIGI-SKLTSLRTLG-KFVVGGGVDGSSTCRLESLKNLQLLRECG 252
             L L+ +     ++       L+S+R L  +         S     E    ++ L    
Sbjct: 175 HHLTLHLS--ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF-- 230

Query: 253 IEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPV 312
               G+V   +    L    +  L    +EF         +    +      L  ++  V
Sbjct: 231 ---RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-V 286

Query: 313 NVEELWIVY-YGGNIFPKWLTSLTNLRNLYLSSC 345
            +  L I   Y         + L  ++ + + + 
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAG-I 189
           N IT I         +L+ L L    I  +  +    L +L+ LD+     L  L +   
Sbjct: 36  NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF 94

Query: 190 GKLMNMRSL-LNDNTRSLKYMPIG--ISKLTSLRTLG 223
           G L +++ L L  N    + + +      LT+L+TL 
Sbjct: 95  GPLSSLKYLNLMGN--PYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 44/317 (13%), Positives = 101/317 (31%), Gaps = 50/317 (15%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136
            +       +R L + D +L+    +   + E+ S +  L      + S  +    N + 
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA----FRGSVLTDESFNELL 244

Query: 137 EIPENVGKLIHLKYLNLSGLCIKRLPETLC---------ELYNLQKLDIRWCRNLRELPA 187
           ++   + +L  +++ + +   +     +           E   +++L I       +L  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 188 GIGKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTLG----KFVVGGGVDGSSTCRLES 241
               L  ++ + + ++   +  +P      L SL  L       V     + +      S
Sbjct: 305 VYSLLEKVKRITVENS--KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 242 LKNLQLLRECGIEGLGNVSHL-DEAERLQ-LYNQQNLLC-LHLEFGRVVDGEDEERRRKK 298
           L+ L L  +  +  +     +    + L  L   +N    +                   
Sbjct: 363 LQTLVL-SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP------------ 409

Query: 299 EKDEQL------LKALQP--PVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEH 350
           EK   L      ++ ++   P  +E L +     N    +   L  L+ LY+S     + 
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDV---SNNNLDSFSLFLPRLQELYISRN-KLKT 465

Query: 351 LPPLGKLP-LEKLTLYN 366
           LP     P L  + +  
Sbjct: 466 LPDASLFPVLLVMKISR 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 59/338 (17%), Positives = 103/338 (30%), Gaps = 73/338 (21%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLK 149
            LSNL L G    S  P  FS L  L  LV  +           +  +     G+LI LK
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE---------TKLASLESFPIGQLITLK 131

Query: 150 YLNLSGLCIKR--LPETLCELYNLQKLDIRWCR--------------------------- 180
            LN++   I    LP     L NL  +D+ +                             
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 181 NLRELPAGIGKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRL 239
            +  +     + + +  L L  N  S   M   +  L  L                    
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH----------RLILGEF 241

Query: 240 ESLKNLQLLRECGIEGLGNVSHLD---------EAERLQLYNQQNLLCLHLE---FGRVV 287
           +  +NL++     +EGL +V+  +           + ++ +   N+  + L       + 
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

Query: 288 DGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN--IFPKWLTSLTNLRNLYLSSC 345
           D     + +        LK   P +++  L  +    N         +L +L  L LS  
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQF-PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 346 FNCEHLPPLGKLPLEKLTLYNLKSVKRVGNEFLGIEES 383
                L   G      L   +L+ +    N  + +  +
Sbjct: 361 ----ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 17/205 (8%)

Query: 66  LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSS 125
           L  NF     +         L    +      +        P +   L  +       + 
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 126 SFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLREL 185
           +      N  ++       L ++  ++L+G+ IK L + + + +  Q L I  C  L++ 
Sbjct: 271 T------NDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRC-QLKQF 322

Query: 186 PAGIGKLMNMRSL-LNDNTRSLKYMPIGISKLTSL---RTLGKFVVGGGVDGSSTCRLES 241
           P     L  ++SL L  N  S+ +  + +  L+ L   R    F          T  L  
Sbjct: 323 PT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 242 L---KNLQLLRECGIEGLGNVSHLD 263
           L    N  ++      GL  + HLD
Sbjct: 381 LDLSFNGAIIMSANFMGLEELQHLD 405

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 29/152 (19%)

Query: 79  SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138
              +   L+SL         L++N   +      L  L  L +S+         N ++  
Sbjct: 323 PTLDLPFLKSL--------TLTMNKGSISFKKVALPSLSYLDLSR---------NALSFS 365

Query: 139 PENV---GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM 195
                       L++L+LS      +      L  LQ LD +    L+ +       +++
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTE-FSAFLSL 423

Query: 196 RSL----LNDNTRSLKYMPIGI-SKLTSLRTL 222
             L    ++    + K    GI   LTSL TL
Sbjct: 424 EKLLYLDISYT--NTKIDFDGIFLGLTSLNTL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 21/133 (15%)

Query: 95  SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYLNL 153
              +  L+  +  ++ S    +           S    N +  +          L++L+L
Sbjct: 17  QCMDQKLS-KVPDDIPSSTKNI---------DLSF---NPLKILKSYSFSNFSELQWLDL 63

Query: 154 SGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSL-LNDNTRSLKYMP 210
           S   I+ +  +    L++L  L +     ++    G    L ++ +L   +    L  + 
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVET--KLASLE 120

Query: 211 IG-ISKLTSLRTL 222
              I +L +L+ L
Sbjct: 121 SFPIGQLITLKKL 133

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 40/303 (13%), Positives = 80/303 (26%), Gaps = 50/303 (16%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136
                +   L+ L     ++++  ++   LP  FS L  L  + +S          N I 
Sbjct: 121 SFPIGQLITLKKL-----NVAHNFIHSCKLPAYFSNLTNLVHVDLSY---------NYIQ 166

Query: 137 EIPENV-----GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGK 191
            I  N              L++S   I  + +   +   L +L +R   N   +     +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 192 -------LMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKN 244
                     +     D      + P  +  L  +      +           +   L N
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 245 LQLLR--ECGIEGLGNVSHLDEAERLQLYNQQ----------NLLCLHLEFGRVVDGEDE 292
           +  +      I+ L +V    + + L +   Q           L  L L   +      +
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK 346

Query: 293 ERRRK-----------KEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLY 341
                                     L    ++  L + + G  I       L  L++L 
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 342 LSS 344
              
Sbjct: 406 FQH 408

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 22/172 (12%), Positives = 43/172 (25%), Gaps = 29/172 (16%)

Query: 2   EMIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQFVCRKECLWLEIDGNKESVIN 57
               E+       +S              +HD+  DF      K C   ++    + +I 
Sbjct: 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT---EKNC--SQLQDLHKKIIT 462

Query: 58  FFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNL--SLNGSILPELFSKLAC 115
                 R+   +              D+   +  Y+    ++  +     L  L   L  
Sbjct: 463 ---QFQRYHQPH----------TLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDW 509

Query: 116 LRALVISQSSS-----FSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLP 162
           ++A       +     F      L  +             LN   L  +  P
Sbjct: 510 IKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPFP 561

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 14/130 (10%)

Query: 85  RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGK 144
           +L  L     SL  LS+  + L  L      L AL +S          NL+  +P    +
Sbjct: 151 QLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST---------NLLESLPAVPVR 201

Query: 145 LIHLK----YLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLN 200
             H +    +       I  +PE +  L     + +     L             +   +
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYH 260

Query: 201 DNTRSLKYMP 210
                     
Sbjct: 261 GPRIYFSMSD 270

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 27/131 (20%)

Query: 94  ESLSNLSLNG---SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
              S L LN    S LP+       +  L I+Q         N +  +PE       L+Y
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQ---------NALISLPELPA---SLEY 104

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYM 209
           L+     +  LPE      +L+ LD+   + L  LP     L     +  ++N   L  +
Sbjct: 105 LDACDNRLSTLPELPA---SLKHLDVDNNQ-LTMLPELPALL---EYINADNN--QLTML 155

Query: 210 PIGISKLTSLR 220
           P   + L  L 
Sbjct: 156 PELPTSLEVLS 166

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
             +T +  ++ +L+ + +L+LS   ++ LP  L  L  L+ L       L  +  G+  L
Sbjct: 451 KDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANL 507

Query: 193 MNMRSL-LNDNTRSLKYMP--IGISKLTSLRTL 222
             ++ L L +N   L+       +     L  L
Sbjct: 508 PRLQELLLCNN--RLQQSAAIQPLVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 147 HLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL 206
            L   +L+    +     +    + QK  +                  +      +    
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC-ELSVEKS 361

Query: 207 KYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAE 266
             +   +     L+ L           +    + +L  L        E L   S L   +
Sbjct: 362 TVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYE----KETLQYFSTLKAVD 415

Query: 267 RLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQL--LKALQPPVNVEELWIVYYGG 324
            ++     +L    L    V+  E  + R      + L  L  L+  + V  L + +   
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL 475

Query: 325 NIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
              P  L +L  L  L  S     E++  +  LP L++L L N
Sbjct: 476 RALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN 517

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 5/145 (3%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCR-NLRELPAGIGK 191
           N +  +         + +++L    +  + + L    NL+  D+R    +   L     K
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 192 LMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLREC 251
              ++++     + L         + +L   G +      +       + L  L+     
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC----CEDLPAPFADRLIALKRKEHA 316

Query: 252 GIEGLGNVSHLDEAERLQLYNQQNL 276
            + G G+ +   E ER     Q+ +
Sbjct: 317 LLSGQGSETERLECERENQARQREI 341

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 38/279 (13%), Positives = 86/279 (30%), Gaps = 52/279 (18%)

Query: 106 LPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGK-LIHLKYLNLSGLCIKRL-PE 163
           + E+       +   ++          + + +   ++ +   ++K L+LSG  + ++   
Sbjct: 2   IHEIKQNGNRYKIEKVTD---------SSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

Query: 164 TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTL 222
            L     L+ L++     L E    +  L  +R+L LN+N   ++     +    S+ TL
Sbjct: 53  DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN--YVQ----ELLVGPSIETL 104

Query: 223 GKFVVGGGVDGS----STCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLC 278
                      +    S       +  + +       L N + +     L    +  +  
Sbjct: 105 ---------HAANNNISRVSCSRGQGKKNIY------LAN-NKITMLRDLDEGCRSRVQY 148

Query: 279 LHLEFGRVVDGEDEERRRKKEKDEQL------LKALQPPVNVEELWIVYYGGN---IFPK 329
           L L+   +      E     +  E L      +  ++  V   +L  +    N       
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP 208

Query: 330 WLTSLTNLRNLYLSSCFNCEHLPP-LGKLP-LEKLTLYN 366
              S   +  + L +      +   L     LE   L  
Sbjct: 209 EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 57/391 (14%), Positives = 111/391 (28%), Gaps = 73/391 (18%)

Query: 1   MEMIGEEYFNMLATRSFFQEIEKDCNMHDIVHDFAQFVCR-------KECLWLEIDG--N 51
           +EM+ +  + +    ++    +   N+   +H     + R       + CL L +    N
Sbjct: 199 LEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQN 255

Query: 52  KESVINFFGGKVRHL-----GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLS--LNGS 104
            +   N F    + L         +  +    +    D     L  DE  S L   L+  
Sbjct: 256 AK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 105 I--LPELFSKLACLRA-LVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL 161
              LP              +S  +     G        +N   +   K   +    +  L
Sbjct: 315 PQDLPRE----VLTTNPRRLSIIAESIRDGLATW----DNWKHVNCDKLTTIIESSLNVL 366

Query: 162 -PETLCELYN------------LQKLDIRWCRNLRELPAGIGKLMNMRSLLN-DNTRSLK 207
            P    ++++               L + W   ++     +   ++  SL+      S  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 208 YMPIGI-----SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECG--IEGLGNVS 260
            +P  I      KL +   L + +    VD  +  +     +L            +G+  
Sbjct: 427 SIP-SIYLELKVKLENEYALHRSI----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-- 479

Query: 261 HLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVN-VEELWI 319
           HL   E  +      ++ L   F            +K   D     A    +N +++L  
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF----------LEQKIRHDSTAWNASGSILNTLQQL-- 527

Query: 320 VYYGGNIFPKWLTSLTNLRNLYLSSCFNCEH 350
            +Y   I          L N  L      E 
Sbjct: 528 KFYKPYICDN-DPKYERLVNAILDFLPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 77/500 (15%), Positives = 141/500 (28%), Gaps = 135/500 (27%)

Query: 17  FFQEIEKDCNMHDIVHDFAQFVCRKEC----------------LWLEIDGNKESVINFFG 60
           F      + +  D+       + ++E                  W  +   +E V  F  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 61  GKVRHLGLNFEGGAPLPMSFFEFDRLRSLL--IYDESLSNLSLNGSIL-------PELFS 111
                L +N++    L        R  S++  +Y E    L  +  +         + + 
Sbjct: 85  EV---LRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 112 KL-ACLRALVISQSSSFSHPGPNLITEIPENVGK--L-----------------IHLKYL 151
           KL   L  L          P  N++ +     GK  +                 I   +L
Sbjct: 139 KLRQALLEL---------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WL 187

Query: 152 NLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPI 211
           NL   C    PET+  L  LQKL  +   N            N++  ++     L+ +  
Sbjct: 188 NL-KNCNS--PETV--LEMLQKLLYQIDPNWTSRSDHS---SNIKLRIHSIQAELRRLLK 239

Query: 212 GISKLTSL---------RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGI---EGLGNV 259
                  L         +    F +         C++     L   R   +         
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLS--------CKI-----LLTTRFKQVTDFLSAATT 286

Query: 260 SHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL-----KALQPPVNV 314
           +H+             +  L     + +D   ++  R+             ++++  +  
Sbjct: 287 THISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 315 EELWIVYYGGNIFPKWL-TSLTNLRNLYLSSCF-NCEHLPPLGKLPLEKLTLY--NLKS- 369
            + W  +   +     + +SL  L        F      PP   +P   L+L   ++   
Sbjct: 344 WDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 370 -VKRVGNEFLGIEESS--EDDPSSSSSSSSELSIEGCPLLEN----------RYREGKGE 416
            V  V N+     + S  E  P  S+ S   + +E    LEN           Y   K  
Sbjct: 403 DVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 417 DWHKI----------SHIPH 426
           D   +          SHI H
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH 479

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 43/326 (13%), Positives = 97/326 (29%), Gaps = 101/326 (30%)

Query: 34  FAQFV-CRKECLWLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFE---FDRLRSL 89
             +++ CR + L  E+       ++     +R     ++         ++    D+L ++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--------NWKHVNCDKLTTI 358

Query: 90  LIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGP---------NLITEIPE 140
           +  + SL+ L       P  + K      L +   S+     P         ++I     
Sbjct: 359 I--ESSLNVLE------PAEYRK--MFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVM 405

Query: 141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRW-CRNLRELPAGIGKLMNMRSLL 199
            V   +H        L  K+  E+   + ++  L+++    N   L          RS++
Sbjct: 406 VVVNKLHKY-----SLVEKQPKESTISIPSIY-LELKVKLENEYAL---------HRSIV 450

Query: 200 NDNTRSLKYMPIGISK--------------LTSLRTLGKFVVGGGVDGSSTCRLESLKNL 245
           +       +    +                L ++    +                  + +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--------------TLFRMV 496

Query: 246 QL--------LRECGIEGLGNVSHLDEAERLQLYNQ---------QNLLCLHLEFGRVVD 288
            L        +R        + S L+  ++L+ Y           + L+   L+F   + 
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LP 553

Query: 289 GEDEERRRKKEKDEQLLK-ALQPPVN 313
             +E     K  D  LL+ AL     
Sbjct: 554 KIEENLICSKYTD--LLRIALMAEDE 577

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
             + L L+     +           L  L + +           +T++  + G L  L  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR---------AELTKLQVD-GTLPVLGT 81

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSLKY 208
           L+LS   ++ LP     L  L  LD+ + R L  LP G    L  ++ L L  N   LK 
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN--ELKT 138

Query: 209 MPIGI-SKLTSLRTL 222
           +P G+ +    L  L
Sbjct: 139 LPPGLLTPTPKLEKL 153

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 30/152 (19%)

Query: 45  WLEIDGNKESVINFFGG--KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYD--------- 93
            L +D  + + +   G    +  L L+      LP+       L  L +           
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 94  -----ESLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-G 143
                  L  L L G    ++ P L +    L  L ++          N +TE+P  +  
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN---------NNLTELPAGLLN 169

Query: 144 KLIHLKYLNLSGLCIKRLPETLCELYNLQKLD 175
            L +L  L L    +  +P+     + L    
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 50/197 (25%)

Query: 82  EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141
           + + L  + + + ++++L                ++ L I+             T     
Sbjct: 42  QMNSLTYITLANINVTDL--------TGIEYAHNIKDLTINN---------IHATNY-NP 83

Query: 142 VGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-L 199
           +  L +L+ L + G  +       L  L +L  LDI    +   +   I  L  + S+ L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 200 NDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL--RECGIEGLG 257
           + N          I+ +                      L++L  L+ L  +  G+    
Sbjct: 144 SYNGA--------ITDIMP--------------------LKTLPELKSLNIQFDGVHDYR 175

Query: 258 NVSHLDEAERLQLYNQQ 274
            +    +  +L  ++Q 
Sbjct: 176 GIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 33/177 (18%)

Query: 194 NMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL--REC 251
             ++ LN          I  +++ SL  +   +    V  +    +E   N++ L     
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYIT--LANINV--TDLTGIEYAHNIKDLTINNI 76

Query: 252 GIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPP 311
                  +S L            NL  L +    V                  +  L   
Sbjct: 77  HATNYNPISGL-----------SNLERLRIMGKDVTS--------------DKIPNLSGL 111

Query: 312 VNVEELWIVYYG-GNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
            ++  L I +    +     + +L  + ++ LS       + PL  LP L+ L +  
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 25/137 (18%)

Query: 95  SLSNLSLNGSI-LPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYL-- 151
            LS L+L     +P   + L  L  L I   ++    GP     IP  + KL  L YL  
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--GP-----IPPAIAKLTQLHYLYI 108

Query: 152 ---NLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSL-LNDN--TR 204
              N+SG     +P+ L ++  L  LD  +   L   LP  I  L N+  +  + N  + 
Sbjct: 109 THTNVSG----AIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 205 SLKYMPIGISKLTSLRT 221
           ++   P      + L T
Sbjct: 164 AI---PDSYGSFSKLFT 177

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 15/158 (9%)

Query: 94  ESLSNLSLNG---SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
           ++L +L+L       +       A L+ L +S          N +  +         + +
Sbjct: 169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSS---------NKLAFMGPEFQSAAGVTW 218

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCR-NLRELPAGIGKLMNMRSLLNDNTRSLKYM 209
           ++L    +  + + L    NL+  D+R    +   L     K   ++++     + L   
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 210 PIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQL 247
                 + +L   G +     +      RL +L +   
Sbjct: 279 NEEECTVPTLGHYGAYCC-EDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 70/298 (23%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
           ++  L L+G     I     +    L  L +S          N++ E  + +  L  L+ 
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSS---------NVLYETLD-LESLSTLRT 84

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYM 209
           L+L+   ++ L        +++ L       +  +    G+    +++ L +N   +  +
Sbjct: 85  LDLNNNYVQELLV----GPSIETLHAANNN-ISRVSCSRGQ--GKKNIYLANN--KITML 135

Query: 210 PIG-ISKLTSLRTLG------KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHL 262
                   + ++ L         V    +  S     ++L++L  L+   I  +      
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS----SDTLEHL-NLQYNFIYDVKGQVVF 190

Query: 263 DEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY 322
            + + L L +  N L                          +    Q    V  + +   
Sbjct: 191 AKLKTLDLSS--NKL------------------------AFMGPEFQSAAGVTWISL--- 221

Query: 323 GGN---IFPKWLTSLTNLRNLYLSSC-FNCEHLPPLGKLPLEKLTLYNLKSVKRVGNE 376
             N   +  K L    NL +  L    F+C  L        +++     ++VK++  +
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQ 278

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 19/125 (15%)

Query: 79  SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138
               +  L  + +    L  +          F K+  L  L IS          N +  +
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIM------YHPFVKMQRLERLYISN---------NRLVAL 287

Query: 139 PENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL 198
                 +  LK L+LS   +  +     +   L+ L +     +  L         +++L
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLST--HHTLKNL 344

Query: 199 -LNDN 202
            L+ N
Sbjct: 345 TLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 89  LLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIH 147
            + YD  +   + +     E  + L   + +             + + ++P  +      
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKN---------STMRKLPAALLDSFRQ 70

Query: 148 LKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTR 204
           ++ LNL+ L I+ +        + +QKL + +   +R LP  +   +  +  L L  N  
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-- 127

Query: 205 SLKYMPIGI-SKLTSLRTL 222
            L  +P GI      L TL
Sbjct: 128 DLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 22/134 (16%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
           ++  L  +      +   +  +L  L            H   N +T+    +     L  
Sbjct: 206 AVEELDASHNSINVVRGPVNVELTIL---------KLQH---NNLTDTAWLLN-YPGLVE 252

Query: 151 LNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKY 208
           ++LS   ++++      ++  L++L I   R L  L      +  ++ L L+ N   L +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN--HLLH 309

Query: 209 MPIGISKLTSLRTL 222
           +     +   L  L
Sbjct: 310 VERNQPQFDRLENL 323

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPETLC-ELYNLQKLDIRWCRNLRELPAGI- 189
           N ++ +P     +L  L+ L L+   ++ LP  +  EL NL+ L +   + L+ LP G+ 
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVF 105

Query: 190 GKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
            +L+N+  L L+ N   LK +P  +   LT L  L
Sbjct: 106 DQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYL 138

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 30/150 (20%)

Query: 83  FDRLRSLLIYDESLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138
           F  L       ++L  L +      ++   +F +L  L  L + +         N +  +
Sbjct: 81  FKEL-------KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR---------NQLKSL 124

Query: 139 PENV-GKLIHLKYLNLSGLCIKRLPETLCE-LYNLQKLDIRWCRN-LRELPAGI-GKLMN 194
           P  V   L  L YL+L    ++ LP+ + + L +L++L +    N L+ +P G   KL  
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL--YNNQLKRVPEGAFDKLTE 182

Query: 195 MRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
           +++L L++N   LK +P G    L  L+ L
Sbjct: 183 LKTLKLDNN--QLKRVPEGAFDSLEKLKML 210

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 1   MEMIGEEYFNMLATRSFFQEIE----KDCNMHDIVHDFAQFVCRKECLWLEIDGNKESVI 56
           ++    +    L+ R      +        +  I+H F + V   + +         + I
Sbjct: 426 LDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI--------ANGI 477

Query: 57  NFFGGKVRHLGLN--FEGGAPLPMSFFEFDRLRSLLIYDESLSNLSL 101
           +    ++  +G N        +P  F +F R  +  +Y ++     +
Sbjct: 478 SILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKTTEETVI 524

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 25/140 (17%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG---KLIH 147
           S + L L      S+   +F KL  L  L +S          N ++              
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSS---------NGLSFKGCCSQSDFGTTS 79

Query: 148 LKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL----LNDNT 203
           LKYL+LS   +  +      L  L+ LD +    L+++       +++R+L    ++   
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEF-SVFLSLRNLIYLDISHT- 136

Query: 204 RSLKYMPIGI-SKLTSLRTL 222
              +    GI + L+SL  L
Sbjct: 137 -HTRVAFNGIFNGLSSLEVL 155

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 83  FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV 142
           F+ L SL +    ++  S   + LP++F++L  L  L +SQ           + ++    
Sbjct: 146 FNGLSSLEVLK--MAGNSFQENFLPDIFTELRNLTFLDLSQ---------CQLEQLSPTA 194

Query: 143 -GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI--GKLMNMRSL 198
              L  L+ LN+S      L       L +LQ LD     ++             ++  L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFL 253

Query: 199 -LNDN 202
            L  N
Sbjct: 254 NLTQN 258

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 25/152 (16%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136
             +      L  L      L +L++N +I    F +L  L+ L IS            + 
Sbjct: 169 TEALSHLHGLIVL-----RLRHLNIN-AIRDYSFKRLYRLKVLEISHW--------PYLD 214

Query: 137 EIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNM 195
            +  N    ++L  L+++   +  +P   +  L  L+ L++ +   +  +   +  L  +
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM--LHEL 271

Query: 196 RSL----LNDNTRSLKYMPIGI-SKLTSLRTL 222
             L    L      L  +       L  LR L
Sbjct: 272 LRLQEIQLVGG--QLAVVEPYAFRGLNYLRVL 301

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 54/299 (18%), Positives = 99/299 (33%), Gaps = 77/299 (25%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLK 149
               L L      ++  + F+    L  L +++         N+++ +       L +L+
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNE---------NIVSAVEPGAFNNLFNLR 83

Query: 150 YLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSL 206
            L L    +K +P      L NL KLDI   + +  L   +   L N++SL + DN   L
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN--DL 140

Query: 207 KYMPIGI-SKLTSLRTLG----KFVVGGGVDGSSTCRLESLKNLQL-------LRECGIE 254
            Y+     S L SL  L            +   +   L  L  L+L       +R+   +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTS---IPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 255 GLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNV 314
            L  +  L+    +  +   + +  +  +G                           +N+
Sbjct: 198 RLYRLKVLE----ISHWPYLDTMTPNCLYG---------------------------LNL 226

Query: 315 EELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYN 366
             L I          +    +  L  LR L LS       +    L +L  L+++ L  
Sbjct: 227 TSLSI---THCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVG 281

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPETLC-ELYNLQKLDIRWCRN-LRELPAGI 189
           N IT++   V   LI+LK L L    +  LP  +   L  L  LD+    N L  LP+ +
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG--TNQLTVLPSAV 107

Query: 190 -GKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTLG------KFVVGGGVDGSSTCRLES 241
             +L++++ L +  N   L  +P GI +LT L  L       K +  G  D     RL S
Sbjct: 108 FDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD-----RLSS 160

Query: 242 LKNLQL 247
           L +  L
Sbjct: 161 LTHAYL 166

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 62/359 (17%), Positives = 121/359 (33%), Gaps = 70/359 (19%)

Query: 46  LEIDGNKESVI---NFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIY------DESL 96
           L++ GN  +V    NF     +    +      +  + F F  ++             S+
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268

Query: 97  SNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYL 151
            +L L+     S+   +F  L  L+ L ++          N I +I +     L +L+ L
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAY---------NKINKIADEAFYGLDNLQVL 319

Query: 152 NLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDN------ 202
           NLS   +  L       L  +  +D++    +  +       L  +++L L DN      
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

Query: 203 -TRSLKYMPIGISKLTSLRTLG------KFVVGGGVDGSSTCRLESLKNLQLLR--ECGI 253
              S+  + +  +KL +L  +               +      L  + +LQ+L   +   
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 254 EGLGNVSHLDEAERLQ-LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPV 312
                     E   L+ L+  +N+L               +   + E    + + L    
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENML---------------QLAWETELCWDVFEGLS--- 480

Query: 313 NVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYN 366
           +++ L++     N    + P   + LT LR L L+S      L        LE L +  
Sbjct: 481 HLQVLYL---NHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 27/149 (18%)

Query: 83  FDRLRSLLIYDESLSNLSLNG---SILPELFSKLACLRALVISQSSSFSHPGPNLITEIP 139
           F  L  L    E L +LS N    S+ P  F  L  L  L + +           + E+ 
Sbjct: 76  FTGLALL----EQL-DLSDNAQLRSVDPATFHGLGRLHTLHLDR---------CGLQELG 121

Query: 140 ENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRN-LRELPAGI-GKLMNM 195
             +   L  L+YL L    ++ LP+ T  +L NL  L +    N +  +P      L ++
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH--GNRISSVPERAFRGLHSL 179

Query: 196 RSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
             L L+ N   + ++       L  L TL
Sbjct: 180 DRLLLHQN--RVAHVHPHAFRDLGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI- 189
           N I+ +P        +L  L L    + R+       L  L++LD+     LR +     
Sbjct: 42  NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 190 GKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
             L  + +L L+     L+ +  G+   L +L+ L
Sbjct: 102 HGLGRLHTLHLDRC--GLQELGPGLFRGLAALQYL 134

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 19/125 (15%)

Query: 79  SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI 138
               +  L  +      LS   L   I+   F K+  L  L IS          N +  +
Sbjct: 249 WLLNYPGLVEV-----DLSYNELE-KIMYHPFVKMQRLERLYISN---------NRLVAL 293

Query: 139 PENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL 198
                 +  LK L+LS   +  +     +   L+ L +     +  L         +++L
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLST--HHTLKNL 350

Query: 199 -LNDN 202
            L+ N
Sbjct: 351 TLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 89  LLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIH 147
            + YD  +   + +     E  + L   + +             + + ++P  +      
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKN---------STMRKLPAALLDSFRQ 76

Query: 148 LKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTR 204
           ++ LNL+ L I+ +        + +QKL + +   +R LP  +   +  +  L L  N  
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-- 133

Query: 205 SLKYMPIGI-SKLTSLRTL 222
            L  +P GI      L TL
Sbjct: 134 DLSSLPRGIFHNTPKLTTL 152

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 22/134 (16%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
           ++  L  +      +   +  +L  L+           H   N +T+    +     L  
Sbjct: 212 AVEELDASHNSINVVRGPVNVELTILK---------LQH---NNLTDTAWLLN-YPGLVE 258

Query: 151 LNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKY 208
           ++LS   ++++      ++  L++L I   R L  L      +  ++ L L+ N   L +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN--HLLH 315

Query: 209 MPIGISKLTSLRTL 222
           +     +   L  L
Sbjct: 316 VERNQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 21/135 (15%), Positives = 52/135 (38%), Gaps = 25/135 (18%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLK 149
           ++  L +       + P +F  +  L  LV+ +         N ++ +P  +      L 
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER---------NDLSSLPRGIFHNTPKLT 150

Query: 150 YLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLK 207
            L++S   ++R+  +T     +LQ L +   R L  +   +  + ++    ++ N  S  
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL--IPSLFHANVSYNLLST- 206

Query: 208 YMPIGISKLTSLRTL 222
                ++   ++  L
Sbjct: 207 -----LAIPIAVEEL 216

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 54/243 (22%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
           + +T+       L  +  L+  G  +  + E +  L NL  L+++    + +L   +  L
Sbjct: 29  SNVTDT-VTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-QITDLA-PLKNL 84

Query: 193 MNMRSL-LNDNT-RSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLL-- 248
             +  L L+ N  +++      I+ L S++TL   +    +  +    L  L NLQ+L  
Sbjct: 85  TKITELELSGNPLKNVS----AIAGLQSIKTL--DLTSTQI--TDVTPLAGLSNLQVLYL 136

Query: 249 RECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL 308
               I  +  ++ L   + L + N Q                              +  L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQ------------------------------VSDL 166

Query: 309 QPPVNVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLT 363
            P  N+ +L  +    N    I P  L SL NL  ++L +      + PL     L  +T
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVT 223

Query: 364 LYN 366
           L N
Sbjct: 224 LTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 43/241 (17%), Positives = 74/241 (30%), Gaps = 70/241 (29%)

Query: 132 PNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGK 191
           P  I  I      L +   +      +     T  +L  +  L       +  +  G+  
Sbjct: 6   PTAINVI-FPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGT-GVTTIE-GVQY 61

Query: 192 LMNMRSL-LNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE 250
           L N+  L L DN            ++T L  L                L  +  L+L   
Sbjct: 62  LNNLIGLELKDN------------QITDLAPLKN--------------LTKITELEL-SG 94

Query: 251 CGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP 310
             ++ +  ++ L           Q++  L L   ++ D                +  L  
Sbjct: 95  NPLKNVSAIAGL-----------QSIKTLDLTSTQITD----------------VTPLAG 127

Query: 311 PVNVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLY 365
             N++ L++     N    I P  L  LTNL+ L + +      L PL  L  L  L   
Sbjct: 128 LSNLQVLYL---DLNQITNISP--LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKAD 181

Query: 366 N 366
           +
Sbjct: 182 D 182

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 22/251 (8%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPETLCE-LYNLQKLDIRWCRN-LRELPAGI 189
           N I+E+  +    L  L+ L +S   I+ L  ++ +    L+ LD+    N L ++    
Sbjct: 31  NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS--HNKLVKIS--C 86

Query: 190 GKLMNMRSL-LNDNTRSLKYMPIG--ISKLTSLRTLG------KFVVGGGVDGSSTCRLE 240
              +N++ L L+ N  +   +PI      ++ L+ LG      +      +   +  ++ 
Sbjct: 87  HPTVNLKHLDLSFN--AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 241 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK 300
            +       +   EGL + +       +   N++    L +    V + E    +   E 
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTE-SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 301 DEQLLKALQPPVNVEELWIV---YYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKL 357
           ++                +                 +  L        F+  ++   G+L
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 358 PLEKLTLYNLK 368
                      
Sbjct: 264 DFRDFDYSGTS 274

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 76  LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVIS----QSSSFSHPG 131
           L        +++SL   D  +S  S++        S    L +L +S      + F    
Sbjct: 363 LSKIAEMTTQMKSLQQLD--ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 132 PNL---------ITEIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDI 176
           P +         I  IP+ V KL  L+ LN++   +K +P+     L +LQK+ +
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 49/197 (24%)

Query: 83  FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV 142
           ++   ++ I + ++S   +   +     SK++    L  S          NL+T+     
Sbjct: 296 YEIFSNMNIKNFTVSGTRM---VHMLCPSKISPFLHLDFSN---------NLLTDTVFEN 343

Query: 143 -GKLIHLKYLNLSGLCIKRLPET---LCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRS 197
            G L  L+ L L    +K L +      ++ +LQ+LDI       +   G      ++ S
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 198 L-LNDN----------TRSLKYM----------PIGISKLTSLRTLG------KFVVGGG 230
           L ++ N             +K +          P  + KL +L+ L       K V  G 
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463

Query: 231 VDGSSTCRLESLKNLQL 247
            D     RL SL+ + L
Sbjct: 464 FD-----RLTSLQKIWL 475

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 26/143 (18%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLK 149
           SL+ L L+G     +       L  L  L +S          N I+ +         HL+
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF---------NSISAVDNGSLANTPHLR 243

Query: 150 YLNLSGLCIKRLPETLCELYNLQKLDIRWCRN-LRELPAG----IGKLMNMRSL----LN 200
            L+L+   + ++P  L +   +Q + +    N +  + +      G      S     L 
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLH--NNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 201 DNTRSLKYMPIGI-SKLTSLRTL 222
            N      +       +     +
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 43/159 (27%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITE--IPENV-GKLIH 147
           +L  L ++      +   +F+ L  +  + +           N +    I       +  
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGT---------NPLKSSGIENGAFQGMKK 172

Query: 148 LKYLNLSGLCIKRLP----------------------ETLCELYNLQKLDIRWCRNLREL 185
           L Y+ ++   I  +P                       +L  L NL KL + +   +  +
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV 231

Query: 186 PAGI-GKLMNMRSL-LNDNTRSLKYMPIGISKLTSLRTL 222
             G      ++R L LN+N   L  +P G++    ++ +
Sbjct: 232 DNGSLANTPHLRELHLNNN--KLVKVPGGLADHKYIQVV 268

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 20/137 (14%)

Query: 94  ESLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHL 148
              + L L       I    F  L  L  L++           N I++I       L+ L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN---------NKISKISPGAFAPLVKL 102

Query: 149 KYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSL 206
           + L LS   +K LPE +     LQ+L +     + ++   +   L  M  + L  N    
Sbjct: 103 ERLYLSKNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 207 KYMPIGI-SKLTSLRTL 222
             +  G    +  L  +
Sbjct: 160 SGIENGAFQGMKKLSYI 176

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 25/186 (13%)

Query: 46  LEIDGNKESVINFFGG--KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNG 103
           L    NK            +  L L+  G +             SL    + L +LS NG
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL----KYL-DLSFNG 384

Query: 104 -SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV--GKLIHLKYLNLSGLCIKR 160
              +   F  L  L  L             + + ++ E      L +L YL++S    + 
Sbjct: 385 VITMSSNFLGLEQLEHLDFQH---------SNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 161 LP-ETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSLKYMPIGI-SKL 216
                   L +L+ L +            I  +L N+  L L+     L+ +     + L
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAFNSL 493

Query: 217 TSLRTL 222
           +SL+ L
Sbjct: 494 SSLQVL 499

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRLPETLCE-LYNLQKLDIRWCRNLRELPAGI- 189
           N +  +          L+ L+LS   I+ + +   + L +L  L +     ++ L  G  
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96

Query: 190 GKLMNMRSL-LNDNTRSLKYMPIG-ISKLTSLRTL 222
             L +++ L   +   +L  +    I  L +L+ L
Sbjct: 97  SGLSSLQKLVAVET--NLASLENFPIGHLKTLKEL 129

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 83  FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV 142
           F+ L SL +    ++  S   + LP++F++L  L  L +SQ           + ++    
Sbjct: 441 FNGLSSLEVLK--MAGNSFQENFLPDIFTELRNLTFLDLSQ---------CQLEQLSPTA 489

Query: 143 -GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDI 176
              L  L+ LN++   +K +P+     L +LQK+ +
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 58/297 (19%), Positives = 93/297 (31%), Gaps = 32/297 (10%)

Query: 83  FDRLRSLLIYDESLSNLSLNG--SILPELFSKLACLRALVISQSSSFSHPGPNLITEI-- 138
           F  L SL    + L         S+       L  L+ L ++          NLI     
Sbjct: 96  FSGLSSL----QKL-VAVETNLASLENFPIGHLKTLKELNVAH---------NLIQSFKL 141

Query: 139 PENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRW---CRNLRELPAGIGKLMN 194
           PE    L +L++L+LS   I+ +    L  L+ +  L++        +  +  G  K + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 195 MRSL-LNDNTRSLKYMPIGISKLTSLRTL----GKFVVGGGVDGSSTCRLESLKNLQLLR 249
           +  L L +N  SL  M   I  L  L       G+F   G ++      LE L NL +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE- 260

Query: 250 ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQ 309
           E  +  L             L N  +   + +   RV D       +  E          
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 310 P--PVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSS-CFNCEHLPPLGKLPLEKLT 363
                +++ L      G         L +L  L LS    + +            L 
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 29/201 (14%)

Query: 45  WLEIDGNKESVINFFGGKVRHLGLNFEGGAPLPMSFFEFDRLRSL--LIYDESLSNLSLN 102
            L I+  + + ++++   +  L   F     +         +  +    Y+    +L L 
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDL---FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 103 GSILPEL-FSKLACLRALVISQSSSFSHPG----PNL------------ITEIPENVGKL 145
                +    KL  L+ L  + +   +       P+L                 ++    
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI--GKLMNMRSL-LNDN 202
             LKYL+LS   +  +      L  L+ LD +    L+++        L N+  L ++  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 431

Query: 203 TRSLKYMPIGI-SKLTSLRTL 222
               +    GI + L+SL  L
Sbjct: 432 --HTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 58/294 (19%), Positives = 99/294 (33%), Gaps = 54/294 (18%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLIT--EIPENVGKLIHL 148
           SL  L        S+       L  L+ L ++          NLI   ++PE    L +L
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAH---------NLIQSFKLPEYFSNLTNL 151

Query: 149 KYLNLSGLCIKRL-PETLCELYNLQ----KLDIRWCRNLRELPAGIGKLMNMRSL-LNDN 202
           ++L+LS   I+ +    L  L+ +      LD+     +  +  G  K + +  L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNN 210

Query: 203 TRSLKYMPIGISKLTSLRTL----GKFVVGGGVDGSSTCRLESLKNLQLLR--------- 249
             SL  M   I  L  L       G+F   G ++      LE L NL +           
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 250 ----ECGIEGLGNVSHLD--------EAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK 297
                     L NVS             +    +  Q+L  ++ +FG+    + +  +R 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 298 KEKDEQLLKALQPPVNVEELWIVYYGGN------IFPKWLTSLTNLRNLYLSSC 345
                +        V++  L  +    N         +     T+L+ L LS  
Sbjct: 331 TFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 9/131 (6%)

Query: 95  SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLS 154
           SL  L+   +     FS    L +L   +    S  G +      ++      LKYL+LS
Sbjct: 326 SLKRLTFTSNKGGNAFS-EVDLPSL---EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 155 GLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSLKYMPIG 212
              +  +      L  L+ LD +     +     +   L N+  L ++      +    G
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNG 439

Query: 213 -ISKLTSLRTL 222
             + L+SL  L
Sbjct: 440 IFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 54/304 (17%), Positives = 96/304 (31%), Gaps = 41/304 (13%)

Query: 83  FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQ-SSSFSHPGPNLITEIPEN 141
              L  L ++   L      G++     S L  L  L I +   ++     + I ++   
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LN 200
              L ++   +L  + I+R+ +     +  Q L++  C    + P     L +++ L   
Sbjct: 281 ---LTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNC-KFGQFPTLK--LKSLKRLTFT 333

Query: 201 DNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQL------LRECGIE 254
            N     +  + +  L  L      +   G    S     SLK L L             
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 255 GLGNVSHLD--------EAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLK 306
           GL  + HLD         +E     + +NL+ L +         +               
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-------------- 439

Query: 307 ALQPPVNVEELWIVY--YGGNIFPKWLTSLTNLRNLYLSSC-FNCEHLPPLGKLP-LEKL 362
                 ++E L +    +  N  P   T L NL  L LS C            L  L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 363 TLYN 366
            + +
Sbjct: 500 NMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 133 NLITEIPENV-GKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIG 190
           N +  +          L+ L+LS   I+ +       L +L  L +              
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 191 KLMNMRSL-LNDNTRSLKYM-PIGISKLTSLRTL 222
            L +++ L   +   +L  +    I  L +L+ L
Sbjct: 98  GLSSLQKLVAVET--NLASLENFPIGHLKTLKEL 129

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 82  EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN 141
            F+ L SL +    ++  S   + LP++F++L  L  L +SQ           + ++   
Sbjct: 440 IFNGLSSLEVLK--MAGNSFQENFLPDIFTELRNLTFLDLSQ---------CQLEQLSPT 488

Query: 142 V-GKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIR 177
               L  L+ LN+S      L       L +LQ LD  
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 26/154 (16%)

Query: 78  MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE 137
            +      L SLL+    L+ +S       E F  +  LR L +S          N +  
Sbjct: 58  WTPTRLTNLHSLLLSHNHLNFIS------SEAFVPVPNLRYLDLSS---------NHLHT 102

Query: 138 IPENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI----GK 191
           + E +   L  L+ L L    I  +      ++  LQKL +   + +   P  +     K
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNK 161

Query: 192 LMNMRSL-LNDNTRSLKYMPIG-ISKLTSLRTLG 223
           L  +  L L+ N   LK +P+  + KL +    G
Sbjct: 162 LPKLMLLDLSSN--KLKKLPLTDLQKLPAWVKNG 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 32/183 (17%), Positives = 59/183 (32%), Gaps = 35/183 (19%)

Query: 65  HLGLNFEGGAPLPMSFFEFDRLRSLLIYD-----------ESLSNLSLNG----SILPEL 109
            +G N    +      F+  +L  L I +           E+L+ L L+     +I  E 
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212

Query: 110 FSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLKYLNLSGLCIKRLPETLCEL 168
             + + L  L +           N I  I       L  L+ L+L    + R+P  L +L
Sbjct: 213 LLRYSKLYRLGLGH---------NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263

Query: 169 YNLQKLDIRWCRNLRELPAGI-------GKLMNMRSL-LNDNTRSLKYMPIGI-SKLTSL 219
             LQ + +    N+ ++            K      + L +N      +       +T  
Sbjct: 264 KLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 220 RTL 222
             +
Sbjct: 323 LAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 19/135 (14%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV-GKLIHLK 149
             + L L       +  + F  L  L ALV+           N I++I E     L  L+
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVN---------NKISKIHEKAFSPLRKLQ 105

Query: 150 YLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDNTRSLK 207
            L +S   +  +P  L    +L +L I     +R++P G+   L NM  + +  N     
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 208 YMPIGISKLTSLRTL 222
               G      L  L
Sbjct: 163 GFEPGAFDGLKLNYL 177

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 52/295 (17%), Positives = 90/295 (30%), Gaps = 67/295 (22%)

Query: 83  FDRLRSLLIYDESLSNLSLNG--SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE 140
             R  +L    ++L  L+ NG  +I  + FS L  L  L +S          N ++ +  
Sbjct: 72  LQRCVNL----QAL-VLTSNGINTIEEDSFSSLGSLEHLDLSY---------NYLSNLSS 117

Query: 141 NV-GKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMR 196
           +    L  L +LNL G   K L E      L  LQ L +       ++       L  + 
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 197 SL-LNDNTRSLKYMPIGI-SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIE 254
            L ++ +   L+         + ++  L                L  +K   LL E  ++
Sbjct: 178 ELEIDAS--DLQSYEPKSLKSIQNVSHL---------------IL-HMKQHILLLEIFVD 219

Query: 255 GLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNV 314
              +V  L+      L           E                        +L      
Sbjct: 220 VTSSVECLE-LRDTDLDTFHFSELSTGETN----------------------SLIKKFTF 256

Query: 315 EELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYN 366
             + I         K L  ++ L  L  S     + +P     +L  L+K+ L+ 
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
           ++S+L L+      +L       + +  L +  +   +     L T    ++ K    + 
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSL-LNDN 202
           + ++   + ++ + L ++  L +L+    + L+ +P GI  +L +++ + L+ N
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTN 311

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 42/260 (16%), Positives = 80/260 (30%), Gaps = 49/260 (18%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI-G 190
           + +TEIP ++    +   L      ++ + +       +L+K++I     L  + A +  
Sbjct: 19  SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 191 KLMNMRSLLNDNTRSLKYMPIGI-SKLTSLRTLG-------KFVVGGGVDGSSTCRLESL 242
            L  +  +  +   +L Y+       L +L+ L               +       L+  
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 243 KNLQL--LRECGIEGLGNVSHLDEAERLQLY-------NQQNLLCLHLEFGRVVDGEDEE 293
            N+ +  +      GL   S +    +  +        N   L  L+L            
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL------------ 184

Query: 294 RRRKKEKDEQLLKALQPPV--NVEELWIVYYGGN----IFPKWLTSLTNLRNLYLSSCFN 347
                  D   L+ L   V        I+         +    L +L  LR        N
Sbjct: 185 ------SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---N 235

Query: 348 CEHLPPLGKLP-LEKLTLYN 366
            + LP L KL  L + +L  
Sbjct: 236 LKKLPTLEKLVALMEASLTY 255

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 56/253 (22%)

Query: 44  LWLEIDGNKESVINFFGGKVRHL---GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLS 100
           +      + +    F+   V +L    L            +    L+SL+I         
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 101 LNGSILPELFSKLACLRALVISQSSSFSHPGP-------------NLITEIPENV-GKLI 146
            +   L  +F+++     L IS +       P             N+ T+        L 
Sbjct: 319 FSKEALYSVFAEMNIKM-LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 147 HLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI-----GKLMNMRSL-LN 200
            L+ L L    +K   +      N+  L+      L  L +           ++  L L+
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS-LNSLNSHAYDRTCAWAESILVLNLS 436

Query: 201 DN----------TRSLKY----------MPIGISKLTSLRTLG------KFVVGGGVDGS 234
            N             +K           +P  ++ L +L+ L       K V  G  D  
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFD-- 494

Query: 235 STCRLESLKNLQL 247
              RL SL+ + L
Sbjct: 495 ---RLTSLQYIWL 504

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 51/271 (18%), Positives = 89/271 (32%), Gaps = 76/271 (28%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
             +T+      +L  +  +  +   IK + + +  L N+ KL +   + L ++   +  L
Sbjct: 34  KSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK-LTDIK-PLANL 89

Query: 193 MNMRSL-LNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLR-- 249
            N+  L L++N          +  L+S                    L+ LK L+ L   
Sbjct: 90  KNLGWLFLDEN---------KVKDLSS--------------------LKDLKKLKSLSLE 120

Query: 250 ECGIEGLGNVSHLDEAERLQLYNQQ-----------NLLCLHLEFGRVVDGEDEERRRKK 298
             GI  +  + HL + E L L N +            L  L LE  ++ D          
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---------- 170

Query: 299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKW--LTSLTNLRNLYLSSCFNCEHLPPLGK 356
                 +  L     ++ L++     N       L  L NL  L L S            
Sbjct: 171 ------IVPLAGLTKLQNLYL---SKNHISDLRALAGLKNLDVLELFSQ-------ECLN 214

Query: 357 LPLEKLT-LYNLKSVKRVGNEFLGIEESSED 386
            P+   + L    +VK      +  E  S+D
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLC-ELYNLQKLDIRWCRNLRELPAGI-G 190
           N  T +P+ +    HL  ++LS   I  L       +  L  L +     LR +P     
Sbjct: 41  NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRCIPPRTFD 99

Query: 191 KLMNMRSL-LNDNTRSLKYMPIGI-SKLTSLRTL 222
            L ++R L L+ N   +  +P G  + L++L  L
Sbjct: 100 GLKSLRLLSLHGN--DISVVPEGAFNDLSALSHL 131

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 21/148 (14%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
           + I  +   +    +LK L+LS   I  L   L +L  L++L +   R L+ L       
Sbjct: 51  SNIQSL-AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNR-LKNLNG--IPS 105

Query: 193 MNMRSL-LNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRE- 250
             +  L L++N   L+     +  L +L  L        +  +    +  L  L  L   
Sbjct: 106 ACLSRLFLDNN--ELRDTD-SLIHLKNLEIL-------SIRNNKLKSIVMLGFLSKLEVL 155

Query: 251 ----CGIEGLGNVSHLDEAERLQLYNQQ 274
                 I   G ++ L +   + L  Q+
Sbjct: 156 DLHGNEITNTGGLTRLKKVNWIDLTGQK 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 95  SLSNLSLNGSILPEL-FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNL 153
            L+ L+ + + + +L  ++   L  L  S          N +TEI   V  L  L Y + 
Sbjct: 192 LLNRLNCDTNNITKLDLNQNIQLTFLDCSS---------NKLTEID--VTPLTQLTYFDC 240

Query: 154 SGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGI 213
           S   +  L  +      L  L      +L E+   +     +     +  R +K   + +
Sbjct: 241 SVNPLTELDVSTLS--KLTTLHCIQT-DLLEID--LTHNTQLIYFQAEGCRKIK--ELDV 293

Query: 214 SKLTSLRTL 222
           +  T L  L
Sbjct: 294 THNTQLYLL 302

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 21/131 (16%)

Query: 94  ESLSNLSLNGSILPEL-FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLN 152
            S    +        +   +LA L +L             + IT++   + KL  L  L 
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHN---------SSITDMTG-IEKLTGLTKLI 70

Query: 153 LSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSL-LNDNTRSLKYMPI 211
            +   I  L   L +  NL  L       L  L   +  L  +  L  + N    K   +
Sbjct: 71  CTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN----KLTKL 121

Query: 212 GISKLTSLRTL 222
            +S+   L  L
Sbjct: 122 DVSQNPLLTYL 132

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 19/129 (14%)

Query: 95  SLSNLSLNGSILPEL-FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNL 153
            L+ L    + +  L  S+   L  L             N +T +   V  L  L YLN 
Sbjct: 65  GLTKLICTSNNITTLDLSQNTNLTYLACDS---------NKLTNLD--VTPLTKLTYLNC 113

Query: 154 SGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGI 213
               + +L   + +   L  L+      L E+   +     +  L     + +    + +
Sbjct: 114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT--KLDV 166

Query: 214 SKLTSLRTL 222
           +  T L TL
Sbjct: 167 TPQTQLTTL 175

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 22/139 (15%)

Query: 94  ESLSNLSLNGSILPE---LFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
                L L G  +P    L + L    A+  S          N I ++ +    L  LK 
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSD---------NEIRKL-DGFPLLRRLKT 68

Query: 151 LNLSGLCIKRLPETLCE-LYNLQKLDIRWCRNLRELPAGIGKLMNMRSL----LNDN--T 203
           L ++   I R+ E L + L +L +L +    N       +  L +++SL    +  N  T
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILT--NNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 204 RSLKYMPIGISKLTSLRTL 222
               Y    I K+  +R L
Sbjct: 127 NKKHYRLYVIYKVPQVRVL 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 77  PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT 136
           P +F  + +LR + + +  +S L+      P+ F  L  L +LV+           N IT
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISELA------PDAFQGLRSLNSLVLYG---------NKIT 93

Query: 137 EIPENV-GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGI-GKLM 193
           E+P+++   L  L+ L L+   I  L      +L+NL  L +     L+ +  G    L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLR 152

Query: 194 NMRSL-LNDN 202
            ++++ L  N
Sbjct: 153 AIQTMHLAQN 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.62
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.0
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.0
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.77
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.82
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	89.4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.2e-28  Score=257.73  Aligned_cols=132  Identities=15%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCC
Q 037465          270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNC  348 (432)
Q Consensus       270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  348 (432)
                      +..+++|+.|++++|.              ..+.++..++.++.|+.|++++|... .+|..++.+++|+.|++++|...
T Consensus       628 ~~~l~~L~~LdLs~N~--------------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNM--------------LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             CSSSBCCCEEECCSSC--------------CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             hhccccccEEECcCCc--------------ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence            3445666666666666              33445555666667777777666665 45666667777777777777665


Q ss_pred             CCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccc----ccccCCCCCCccccc
Q 037465          349 EHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLE----NRYREGKGEDWHKIS  422 (432)
Q Consensus       349 ~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~----~~~~~~~~~~~~~~~  422 (432)
                      +.+| .++.++ |++|++++|+--..+|..             +.|.++....+.|||.|-    ..|....+++|++++
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-------------~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~  760 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-------------GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ  760 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEEEECCSS-------------SSGGGSCGGGGCSCTEEESTTSCCCCSCC--------
T ss_pred             CcCChHHhCCCCCCEEECcCCcccccCCCc-------------hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence            5555 356666 777777776643444432             124455555556665543    258888999999999


Q ss_pred             CCCCcc
Q 037465          423 HIPHIQ  428 (432)
Q Consensus       423 ~~~~~~  428 (432)
                      |+|++.
T Consensus       761 ~~~~~~  766 (768)
T 3rgz_A          761 RSHHHH  766 (768)
T ss_dssp             ------
T ss_pred             CccccC
Confidence            999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.2e-26  Score=220.29  Aligned_cols=300  Identities=19%  Similarity=0.166  Sum_probs=238.3

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      .++++.+.+.++.+..++. +..+++|++|++++|.++     .  ++. +..+++|++|++++         +.++.++
T Consensus        43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-----~--~~~-~~~l~~L~~L~L~~---------n~i~~~~  104 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-----D--ISP-LSNLVKLTNLYIGT---------NKITDIS  104 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-----C--CGG-GTTCTTCCEEECCS---------SCCCCCG
T ss_pred             cccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-----c--chh-hhcCCcCCEEEccC---------CcccCch
Confidence            6789999999999988764 889999999999999543     2  344 88999999999999         6677775


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                       .+..+++|++|++++|.+..++. +..+++|++|++++|.....++ .+..+++|++|++++|.... .+. +..+++|
T Consensus       105 -~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L  179 (347)
T 4fmz_A          105 -ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDL  179 (347)
T ss_dssp             -GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC
T ss_pred             -HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCC
Confidence             68999999999999999998886 8999999999999997566554 58899999999999995443 333 7889999


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      ++|++.++....       ...+..+++|+.+++.++.-. ..     ..+..+++|+.|++++|.+.+.          
T Consensus       180 ~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~~L~~L~l~~n~l~~~----------  236 (347)
T 4fmz_A          180 YSLSLNYNQIED-------ISPLASLTSLHYFTAYVNQIT-DI-----TPVANMTRLNSLKIGNNKITDL----------  236 (347)
T ss_dssp             SEEECTTSCCCC-------CGGGGGCTTCCEEECCSSCCC-CC-----GGGGGCTTCCEEECCSSCCCCC----------
T ss_pred             CEEEccCCcccc-------cccccCCCccceeecccCCCC-CC-----chhhcCCcCCEEEccCCccCCC----------
Confidence            999998876552       233788899999999885432 21     1177889999999999983211          


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCcccc
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFL  378 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~  378 (432)
                           . .+..+++|++|++++|....+ ..+..+++|+.|++++|. ++.++.++.++ |+.|++++|. ++..+...+
T Consensus       237 -----~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l  307 (347)
T 4fmz_A          237 -----S-PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVI  307 (347)
T ss_dssp             -----G-GGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCGGGHHHH
T ss_pred             -----c-chhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCc-CCCcChhHh
Confidence                 1 277889999999999988775 467799999999999994 55567788899 9999999997 666654433


Q ss_pred             CCCCCCCCCCCCCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCCC
Q 037465          379 GIEESSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSPD  432 (432)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (432)
                      +           .+++|+.|++++|+ ++.+.+      +..++++..+.++++
T Consensus       308 ~-----------~l~~L~~L~L~~n~-l~~~~~------~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          308 G-----------GLTNLTTLFLSQNH-ITDIRP------LASLSKMDSADFANQ  343 (347)
T ss_dssp             H-----------TCTTCSEEECCSSS-CCCCGG------GGGCTTCSEESSSCC
T ss_pred             h-----------ccccCCEEEccCCc-cccccC------hhhhhccceeehhhh
Confidence            3           48899999999997 554443      445666777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=2e-27  Score=234.04  Aligned_cols=303  Identities=17%  Similarity=0.104  Sum_probs=218.2

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..+ |..|.++++|++|++++|.     +.+.+.+..|..+++|++|++++         +.+..+
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~---------n~l~~~   94 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDY---------NQFLQL   94 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTT---------CTTCEE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCC---------CccCcc
Confidence            57899999999999885 7789999999999999994     44454566799999999999999         566665


Q ss_pred             -CccccCCccccEEEeCCccccc-cchh--hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccC
Q 037465          139 -PENVGKLIHLKYLNLSGLCIKR-LPET--LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGI  213 (432)
Q Consensus       139 -p~~~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l  213 (432)
                       |..++++++|++|++++|.+.. +|..  +..+++|++|++++|......|.. +..+++|++|++++|......+..+
T Consensus        95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  174 (455)
T 3v47_A           95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL  174 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred             ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence             7789999999999999999874 4444  889999999999999955555665 7899999999999997766666555


Q ss_pred             Ccc----------------------------------cccccccceEecccccCC-------------------------
Q 037465          214 SKL----------------------------------TSLRTLGKFVVGGGVDGS-------------------------  234 (432)
Q Consensus       214 ~~l----------------------------------~~L~~L~l~~~~~~~~~~-------------------------  234 (432)
                      ..+                                  ++|++|+++++.......                         
T Consensus       175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  254 (455)
T 3v47_A          175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS  254 (455)
T ss_dssp             GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred             hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence            544                                  445555555543321000                         


Q ss_pred             -------CCcCccccc--cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhh
Q 037465          235 -------STCRLESLK--NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLL  305 (432)
Q Consensus       235 -------~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  305 (432)
                             .......+.  ..++|+.++++++.    .....+..+..+++|+.|++++|.+              ....+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l--------------~~~~~  316 (455)
T 3v47_A          255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK----IFALLKSVFSHFTDLEQLTLAQNEI--------------NKIDD  316 (455)
T ss_dssp             CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCC--------------CEECT
T ss_pred             ccchhhhccCcccccccccccCceEEEecCcc----ccccchhhcccCCCCCEEECCCCcc--------------cccCh
Confidence                   000000000  11345555555422    1122344567778888888888872              23334


Q ss_pred             hcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCC
Q 037465          306 KALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEE  382 (432)
Q Consensus       306 ~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~  382 (432)
                      ..+..+++|++|++++|....+ |..+..+++|+.|++++|......| .++.++ |++|++++|. ++.++...+.   
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~---  392 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFD---  392 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT---
T ss_pred             hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhc---
Confidence            5677788999999988877665 5667788999999999996655444 577888 9999999887 7777765443   


Q ss_pred             CCCCCCCCCCCCcceEEEeCCccc
Q 037465          383 SSEDDPSSSSSSSSELSIEGCPLL  406 (432)
Q Consensus       383 ~~~~~~~~~~~~L~~L~i~~cp~L  406 (432)
                              .+++|+.|+++++|--
T Consensus       393 --------~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          393 --------RLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             --------TCTTCCEEECCSSCBC
T ss_pred             --------cCCcccEEEccCCCcc
Confidence                    4789999999986543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1e-26  Score=237.97  Aligned_cols=299  Identities=12%  Similarity=0.101  Sum_probs=191.7

Q ss_pred             CCceEEEEeecCCCCC------------------CCcccc--ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEE
Q 037465           60 GGKVRHLGLNFEGGAP------------------LPMSFF--EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRAL  119 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L  119 (432)
                      .++++.|+++++.+..                  +|..+.  ++++|++|++++|     .+.+. +|..+..+++|++|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-----~l~~~-~p~~l~~l~~L~~L  278 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-----PNLTK-LPTFLKALPEMQLI  278 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-----TTCSS-CCTTTTTCSSCCEE
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-----cCCcc-ChHHHhcCCCCCEE
Confidence            5688999999999888                  888888  9999999999999     44555 45668889999999


Q ss_pred             EeCCCCCCCCCCCCccc--ccCccccCC------ccccEEEeCCccccccch--hhhccCCccEEecccccccccCChhh
Q 037465          120 VISQSSSFSHPGPNLIT--EIPENVGKL------IHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAGI  189 (432)
Q Consensus       120 ~L~~~~~~~~~~~~~~~--~lp~~~~~l------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~i  189 (432)
                      ++++|        ..++  .+|..++.+      ++|++|++++|.+..+|.  .++.+++|++|++++|...+.+| .+
T Consensus       279 ~Ls~n--------~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          279 NVACN--------RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             ECTTC--------TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred             ECcCC--------CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence            99884        2144  477777665      788888888888888887  78888888888888887444777 77


Q ss_pred             hcccccceEEcCCCCccccCCccCCcccc-cccccceEecccccCCCCcCccccccC--ccCCceeeCCCCCCCCch---
Q 037465          190 GKLMNMRSLLNDNTRSLKYMPIGISKLTS-LRTLGKFVVGGGVDGSSTCRLESLKNL--QLLRECGIEGLGNVSHLD---  263 (432)
Q Consensus       190 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~---  263 (432)
                      +.+++|+.|++++|... .+|..++.+++ |++|++.++....      .+..+..+  ++|+.|+++++.-....+   
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  422 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF  422 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc------cchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence            77788888888887443 77777777777 8888777766542      22222222  245555555432111100   


Q ss_pred             ------------------------hhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhc--------CCCC
Q 037465          264 ------------------------EAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKA--------LQPP  311 (432)
Q Consensus       264 ------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~  311 (432)
                                              ......+..+++|+.|++++|.+.               .++..        +..+
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~---------------~i~~~~~~~~~~~~~~l  487 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT---------------EIPKNSLKDENENFKNT  487 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS---------------BCCSSSSEETTEECTTG
T ss_pred             cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC---------------CcCHHHhcccccccccc
Confidence                                    000111223455555555555421               11111        1122


Q ss_pred             CCCcEEEEeeeCCCCCChhhh--ccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEecccc------ccccccCccccCCC
Q 037465          312 VNVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNL------KSVKRVGNEFLGIE  381 (432)
Q Consensus       312 ~~L~~L~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c------~~l~~~~~~~~~~~  381 (432)
                      ++|+.|++++|....+|..+.  .+++|+.|++++|.... +| .++.++ |+.|++++|      .....+|..+    
T Consensus       488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l----  562 (636)
T 4eco_A          488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI----  562 (636)
T ss_dssp             GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG----
T ss_pred             CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH----
Confidence            267777777776666676665  67777777777775544 44 456667 777777543      2233333322    


Q ss_pred             CCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          382 ESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       382 ~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                              ..+++|++|++++|.- +.+
T Consensus       563 --------~~l~~L~~L~Ls~N~l-~~i  581 (636)
T 4eco_A          563 --------TLCPSLTQLQIGSNDI-RKV  581 (636)
T ss_dssp             --------GGCSSCCEEECCSSCC-CBC
T ss_pred             --------hcCCCCCEEECCCCcC-Ccc
Confidence                    2477888888888765 444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=222.26  Aligned_cols=297  Identities=20%  Similarity=0.166  Sum_probs=219.9

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.|++.++.+..+ +..|.++++|++|++++|.+     ... .+..|..+++|++|++++         +.++.+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~   95 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-----SAV-EPGAFNNLFNLRTLGLRS---------NRLKLI   95 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCSC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-----CEe-ChhhhhCCccCCEEECCC---------CcCCcc
Confidence            56788888888888875 45788888999999988844     332 455688888999999988         667777


Q ss_pred             Cc-cccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465          139 PE-NVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       139 p~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                      |. .+.++++|++|++++|.+..+ |..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+
T Consensus        96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL  175 (477)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred             CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence            65 467888999999998887765 4577888899999998888545556677888889999998885544333557788


Q ss_pred             cccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh
Q 037465          217 TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR  296 (432)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (432)
                      ++|+.|++.++....     .....+..+++|+.|+++++......    +.......+|+.|++++|.+..        
T Consensus       176 ~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~--------  238 (477)
T 2id5_A          176 HGLIVLRLRHLNINA-----IRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTA--------  238 (477)
T ss_dssp             TTCCEEEEESCCCCE-----ECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCS--------
T ss_pred             CCCcEEeCCCCcCcE-----eChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCcccc--------
Confidence            889988888776652     23446777888888888876554432    2223334589999999887322        


Q ss_pred             hhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEecccccccccc
Q 037465          297 KKEKDEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRV  373 (432)
Q Consensus       297 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~  373 (432)
                            .....+..+++|+.|++++|....++ ..+..+++|+.|++++|......+ .+..++ |+.|++++|. ++.+
T Consensus       239 ------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~  311 (477)
T 2id5_A          239 ------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTL  311 (477)
T ss_dssp             ------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCC
T ss_pred             ------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Ccee
Confidence                  12234677889999999988776654 446688999999999986555434 577888 9999999986 8888


Q ss_pred             CccccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465          374 GNEFLGIEESSEDDPSSSSSSSSELSIEGCPLL  406 (432)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L  406 (432)
                      +...+.           .+++|+.|+++++|--
T Consensus       312 ~~~~~~-----------~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          312 EESVFH-----------SVGNLETLILDSNPLA  333 (477)
T ss_dssp             CGGGBS-----------CGGGCCEEECCSSCEE
T ss_pred             CHhHcC-----------CCcccCEEEccCCCcc
Confidence            766553           3789999999988754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=3.8e-26  Score=238.85  Aligned_cols=314  Identities=20%  Similarity=0.111  Sum_probs=163.6

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCC-------
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGP-------  132 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-------  132 (432)
                      ..+++.|++.++.+...+..+.++++|++|++++|.     +++. .+..+..+++|++|++++|........       
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-----l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~  272 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-----LSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ  272 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-----CCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred             CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc-----CCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence            567888888888877744458888889999998884     4444 555678888888888888521000000       


Q ss_pred             ------Cccc-ccCccccCC-ccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCC
Q 037465          133 ------NLIT-EIPENVGKL-IHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDN  202 (432)
Q Consensus       133 ------~~~~-~lp~~~~~l-~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~  202 (432)
                            +.+. .+|..+..+ ++|++|++++|.+. .+|..++.+++|++|++++|...+.+|.. +..+++|++|++++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence                  1111 334444332 55555555555544 44455555555555555555533355544 45555555555555


Q ss_pred             CCccccCCccCCccc-ccccccceEecccccC--C-------------------CCcCccccccCccCCceeeCCCCCCC
Q 037465          203 TRSLKYMPIGISKLT-SLRTLGKFVVGGGVDG--S-------------------STCRLESLKNLQLLRECGIEGLGNVS  260 (432)
Q Consensus       203 ~~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~--~-------------------~~~~~~~l~~l~~L~~L~l~~~~~~~  260 (432)
                      |...+.+|..+..++ +|+.|++.++......  .                   ....+..+.++++|+.|+++++.   
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~---  429 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY---  429 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE---
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc---
Confidence            544444554444444 4555555444332100  0                   00112223333344444443321   


Q ss_pred             CchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcE
Q 037465          261 HLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRN  339 (432)
Q Consensus       261 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~  339 (432)
                       .....+..+..+++|+.|++++|.              ..+..+..+..+++|++|++++|... .+|.++..+++|+.
T Consensus       430 -l~~~~p~~l~~l~~L~~L~L~~n~--------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          430 -LSGTIPSSLGSLSKLRDLKLWLNM--------------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             -EESCCCGGGGGCTTCCEEECCSSC--------------CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             -ccCcccHHHhcCCCCCEEECCCCc--------------ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence             111122333444444444444444              22233444555566666666665554 34556666666666


Q ss_pred             EEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          340 LYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       340 L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                      |++++|...+.+| +++.++ |+.|++++|.-...+|..+.            .+++|+.|++++|+-...+
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~------------~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG------------DCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG------------GCTTCCEEECCSSEEESBC
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc------------CCCCCCEEECCCCccCCcC
Confidence            6666665554444 355566 66666666653334443322            3667777777777654433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=4.7e-26  Score=233.07  Aligned_cols=299  Identities=14%  Similarity=0.185  Sum_probs=218.7

Q ss_pred             CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccC-CcchhhhccC------CcceEEEeCCCCCCCCCC
Q 037465           60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNG-SILPELFSKL------ACLRALVISQSSSFSHPG  131 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l------~~L~~L~L~~~~~~~~~~  131 (432)
                      .++++.|.+.++.+.. +|..+.++++|++|++++|+    .+++ . +|..+..+      ++|++|++++        
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~--------  314 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR----GISGEQ-LKDDWQALADAPVGEKIQIIYIGY--------  314 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT----TSCHHH-HHHHHHHHHHSGGGGTCCEEECCS--------
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC----CCcccc-chHHHHhhhccccCCCCCEEECCC--------
Confidence            6789999999998655 88899999999999999994    1444 3 45556655      8899999988        


Q ss_pred             CCcccccCc--cccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhcccc-cceEEcCCCCccc
Q 037465          132 PNLITEIPE--NVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN-MRSLLNDNTRSLK  207 (432)
Q Consensus       132 ~~~~~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~  207 (432)
                       +.++.+|.  .++++++|++|++++|.+. .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|... 
T Consensus       315 -n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 -NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             -SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             -CcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-
Confidence             56668887  7888888888888888877 788 78888888888888887 5577877888887 888888888544 


Q ss_pred             cCCccCCccc--ccccccceEecccccC--CC-----------------------CcCccc-cccCccCCceeeCCCCCC
Q 037465          208 YMPIGISKLT--SLRTLGKFVVGGGVDG--SS-----------------------TCRLES-LKNLQLLRECGIEGLGNV  259 (432)
Q Consensus       208 ~~p~~l~~l~--~L~~L~l~~~~~~~~~--~~-----------------------~~~~~~-l~~l~~L~~L~l~~~~~~  259 (432)
                      .+|..++.++  +|+.|++.++......  ..                       ...+.. +..+++|+.|++++..-.
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            6776665543  6777777666543210  00                       001111 234566777777664322


Q ss_pred             CCchhhhh----cccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCC--CCCCCcEEEEeeeCCCCCChhhhc
Q 037465          260 SHLDEAER----LQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQ--PPVNVEELWIVYYGGNIFPKWLTS  333 (432)
Q Consensus       260 ~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~l~~  333 (432)
                       ..+....    ..+..+++|+.|++++|.+              . .++..+.  .+++|+.|++++|....+|.++..
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~  534 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKL--------------T-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN  534 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCC--------------C-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcC--------------C-ccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence             2111110    1122344999999999983              2 4555665  899999999999999889999999


Q ss_pred             cCCCcEEEEeC------CCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465          334 LTNLRNLYLSS------CFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL  405 (432)
Q Consensus       334 l~~L~~L~l~~------~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~  405 (432)
                      +++|+.|++++      |...+.+| .++.++ |+.|++++|. ++.+|..              .+++|+.|++++||-
T Consensus       535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~--------------~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK--------------ITPNISVLDIKDNPN  599 (636)
T ss_dssp             CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--------------CCTTCCEEECCSCTT
T ss_pred             CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh--------------HhCcCCEEECcCCCC
Confidence            99999999954      55566666 578899 9999999998 6888654              357999999999975


Q ss_pred             c
Q 037465          406 L  406 (432)
Q Consensus       406 L  406 (432)
                      .
T Consensus       600 ~  600 (636)
T 4eco_A          600 I  600 (636)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=5.9e-26  Score=224.88  Aligned_cols=292  Identities=19%  Similarity=0.135  Sum_probs=227.0

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~  143 (432)
                      .+...+..+..+|..+.  +++++|++++|.+     ... .+..|..+++|++|++++         +.+..+ |..+.
T Consensus        15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~   77 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRI-----KTL-NQDEFASFPHLEELELNE---------NIVSAVEPGAFN   77 (477)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSSCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCEECTTTTT
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEECCCCcc-----ceE-CHhHccCCCCCCEEECCC---------CccCEeChhhhh
Confidence            46667777777887664  6899999999954     332 455689999999999999         667776 77899


Q ss_pred             CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL  222 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  222 (432)
                      ++++|++|++++|.+..+|. .+..+++|++|++++|......|..+..+++|+.|++++|......+..+..+++|++|
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL  157 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred             CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence            99999999999999998886 46889999999999998656667778899999999999997766667788999999999


Q ss_pred             cceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhH
Q 037465          223 GKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDE  302 (432)
Q Consensus       223 ~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  302 (432)
                      ++.++...     ......+..+++|+.|++.+..-    .......+..+++|+.|++++|.              ...
T Consensus       158 ~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~--------------~~~  214 (477)
T 2id5_A          158 TLEKCNLT-----SIPTEALSHLHGLIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISHWP--------------YLD  214 (477)
T ss_dssp             EEESCCCS-----SCCHHHHTTCTTCCEEEEESCCC----CEECTTCSCSCTTCCEEEEECCT--------------TCC
T ss_pred             ECCCCcCc-----ccChhHhcccCCCcEEeCCCCcC----cEeChhhcccCcccceeeCCCCc--------------ccc
Confidence            99988665     22344578889999999987432    22334567888999999999987              233


Q ss_pred             hhhhcCCCCCCCcEEEEeeeCCCCCCh-hhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccC
Q 037465          303 QLLKALQPPVNVEELWIVYYGGNIFPK-WLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLG  379 (432)
Q Consensus       303 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~  379 (432)
                      .++.......+|++|++++|....+|. .+..+++|+.|++++|......+ .+..++ |+.|++++|. ++.++...+.
T Consensus       215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  293 (477)
T 2id5_A          215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFR  293 (477)
T ss_dssp             EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBT
T ss_pred             ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhc
Confidence            344444455689999999998888774 56689999999999996544333 478889 9999999987 7766544332


Q ss_pred             CCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          380 IEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       380 ~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                                 .+++|+.|++++| .++.+
T Consensus       294 -----------~l~~L~~L~L~~N-~l~~~  311 (477)
T 2id5_A          294 -----------GLNYLRVLNVSGN-QLTTL  311 (477)
T ss_dssp             -----------TCTTCCEEECCSS-CCSCC
T ss_pred             -----------CcccCCEEECCCC-cCcee
Confidence                       4789999999987 34433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=4.9e-26  Score=219.54  Aligned_cols=289  Identities=14%  Similarity=0.063  Sum_probs=205.9

Q ss_pred             CCceEEEEeecCCCCCCCcc-ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPMS-FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.+++.++.+..+|.. +.++++|++|++++|.+     ... .+..+..+++|++|++++         +.++.+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~  108 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----EEI-DTYAFAYAHTIQKLYMGF---------NAIRYL  108 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-----ccc-ChhhccCCCCcCEEECCC---------CCCCcC
Confidence            46888999999988887775 57899999999999954     332 444688999999999999         567776


Q ss_pred             -CccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465          139 -PENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       139 -p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                       |..++.+++|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|+.|++++|.... ++  ++.+
T Consensus       109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l  185 (390)
T 3o6n_A          109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI  185 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGC
T ss_pred             CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccc
Confidence             45578899999999999999998876 4889999999999998444445568889999999999985433 32  4556


Q ss_pred             cccccccceEecccccCCCCcCccc---------------cccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEE
Q 037465          217 TSLRTLGKFVVGGGVDGSSTCRLES---------------LKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHL  281 (432)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~~~---------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l  281 (432)
                      ++|+.|++..+.....    ..+..               ....++|+.|+++++.-. .     ...+..+++|+.|++
T Consensus       186 ~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~-----~~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          186 PSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDL  255 (390)
T ss_dssp             TTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-C-----CGGGGGCTTCSEEEC
T ss_pred             cccceeeccccccccc----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCc-c-----cHHHcCCCCccEEEC
Confidence            6777766665543320    00000               012245666666664322 1     134667788888888


Q ss_pred             eeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cc
Q 037465          282 EFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LE  360 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~  360 (432)
                      ++|.+              ....+..+..+++|++|++++|....+|.....+++|+.|++++|......+.++.++ |+
T Consensus       256 s~n~l--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          256 SYNEL--------------EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  321 (390)
T ss_dssp             CSSCC--------------CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             CCCcC--------------CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence            88772              2334456677788888888888777777666678888888888885443333456678 88


Q ss_pred             eEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcc
Q 037465          361 KLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPL  405 (432)
Q Consensus       361 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~  405 (432)
                      .|++++|. ++.++.              ..+++|+.|+++++|-
T Consensus       322 ~L~L~~N~-i~~~~~--------------~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          322 NLYLDHNS-IVTLKL--------------STHHTLKNLTLSHNDW  351 (390)
T ss_dssp             EEECCSSC-CCCCCC--------------CTTCCCSEEECCSSCE
T ss_pred             EEECCCCc-cceeCc--------------hhhccCCEEEcCCCCc
Confidence            88888887 666642              2588999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=1.1e-25  Score=235.15  Aligned_cols=299  Identities=12%  Similarity=0.093  Sum_probs=196.6

Q ss_pred             CCceEEEEeecCCCCC------------------CCcccc--ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEE
Q 037465           60 GGKVRHLGLNFEGGAP------------------LPMSFF--EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRAL  119 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L  119 (432)
                      .++++.|+++++.+..                  +|..+.  ++++|++|++++|     .+.+. +|..+..+++|++|
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-----~l~~~-iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-----PNMTQ-LPDFLYDLPELQSL  520 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-----TTCCS-CCGGGGGCSSCCEE
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-----CCCcc-ChHHHhCCCCCCEE
Confidence            5789999999999888                  888877  9999999999999     45565 45668999999999


Q ss_pred             EeCCCCCCCCCCCCccc--ccCccccCCc-------cccEEEeCCccccccch--hhhccCCccEEecccccccccCChh
Q 037465          120 VISQSSSFSHPGPNLIT--EIPENVGKLI-------HLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAG  188 (432)
Q Consensus       120 ~L~~~~~~~~~~~~~~~--~lp~~~~~l~-------~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~  188 (432)
                      ++++|        ..+.  .+|..++.++       +|++|++++|.+..+|.  .++.+++|++|++++|. +..+| .
T Consensus       521 ~Ls~N--------~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~  590 (876)
T 4ecn_A          521 NIACN--------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A  590 (876)
T ss_dssp             ECTTC--------TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C
T ss_pred             ECcCC--------CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h
Confidence            99994        2144  4676665554       88999999888888887  78888899999998888 45888 7


Q ss_pred             hhcccccceEEcCCCCccccCCccCCcccc-cccccceEecccccCCCCcCccccccCc--cCCceeeCCCCCCCCch--
Q 037465          189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTS-LRTLGKFVVGGGVDGSSTCRLESLKNLQ--LLRECGIEGLGNVSHLD--  263 (432)
Q Consensus       189 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~--  263 (432)
                      ++.+++|+.|++++|... .+|..+..+++ |+.|++.++....      .+..+..+.  +|+.|+++++.-....+  
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS------CCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc------CchhhhccccCCCCEEECcCCcCCCccccc
Confidence            888888888888888655 78888888888 8888888776543      222222222  25555555432211000  


Q ss_pred             -----------------------hhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcC--------CCCC
Q 037465          264 -----------------------EAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL--------QPPV  312 (432)
Q Consensus       264 -----------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~  312 (432)
                                             ......+..+++|+.|++++|.+.               .++..+        ..++
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~---------------~ip~~~~~~~~~~l~nl~  728 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT---------------SIPENSLKPKDGNYKNTY  728 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS---------------CCCTTSSSCTTSCCTTGG
T ss_pred             hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC---------------ccChHHhccccccccccC
Confidence                                   000111224455555665555521               111111        1223


Q ss_pred             CCcEEEEeeeCCCCCChhhh--ccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc------cccccCccccCCCC
Q 037465          313 NVEELWIVYYGGNIFPKWLT--SLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK------SVKRVGNEFLGIEE  382 (432)
Q Consensus       313 ~L~~L~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~------~l~~~~~~~~~~~~  382 (432)
                      +|+.|++++|....+|..+.  .+++|+.|++++|.... +| .++.++ |+.|+|++|+      ....+|..+     
T Consensus       729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l-----  802 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-----  802 (876)
T ss_dssp             GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG-----
T ss_pred             CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH-----
Confidence            67777777776666676665  67777777777775444 44 456667 7777776532      222333222     


Q ss_pred             CCCCCCCCCCCCcceEEEeCCccccccc
Q 037465          383 SSEDDPSSSSSSSSELSIEGCPLLENRY  410 (432)
Q Consensus       383 ~~~~~~~~~~~~L~~L~i~~cp~L~~~~  410 (432)
                             ..+++|+.|++++|.- +.+.
T Consensus       803 -------~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          803 -------TTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             -------GGCSSCCEEECCSSCC-CBCC
T ss_pred             -------hcCCCCCEEECCCCCC-CccC
Confidence                   2477888888888865 4443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.9e-25  Score=220.67  Aligned_cols=126  Identities=17%  Similarity=0.140  Sum_probs=102.9

Q ss_pred             CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..++ ..|.++++|++|++++|++     ++. .+..|..+++|++|++++         +.++.+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~l   84 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-----QYL-DISVFKFNQELEYLDLSH---------NKLVKI   84 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-----CEE-EGGGGTTCTTCCEEECCS---------SCCCEE
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCcc-----CCc-ChHHhhcccCCCEEecCC---------Cceeec
Confidence            478999999999998865 5789999999999999954     333 566789999999999999         678888


Q ss_pred             CccccCCccccEEEeCCccccc--cchhhhccCCccEEecccccccccCChhhhccccc--ceEEcCCCCc
Q 037465          139 PENVGKLIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM--RSLLNDNTRS  205 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~  205 (432)
                      |..  .+++|++|++++|.+..  +|..++.+++|++|++++|....   ..+..+++|  +.|++++|..
T Consensus        85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            876  79999999999999875  56889999999999999987333   346667777  8888877755

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=6e-25  Score=208.48  Aligned_cols=279  Identities=19%  Similarity=0.216  Sum_probs=225.1

Q ss_pred             cCCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           59 FGGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        59 ~~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..++++.|++.++.+..++. +.++++|++|++++|.++.       ++. +..+++|++|++++         +.+..+
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-------~~~-~~~l~~L~~L~l~~---------n~i~~~  125 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-------ISA-LQNLTNLRELYLNE---------DNISDI  125 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------CGG-GTTCTTCSEEECTT---------SCCCCC
T ss_pred             hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-------chH-HcCCCcCCEEECcC---------CcccCc
Confidence            36789999999999998776 8999999999999996532       343 89999999999999         677777


Q ss_pred             CccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccc
Q 037465          139 PENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTS  218 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~  218 (432)
                      +. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|+.|++++|.. ..++. +..+++
T Consensus       126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~  200 (347)
T 4fmz_A          126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTS  200 (347)
T ss_dssp             GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTT
T ss_pred             hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCc
Confidence            65 889999999999999744334468999999999999998 655554 88999999999999954 44444 778999


Q ss_pred             cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465          219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK  298 (432)
Q Consensus       219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (432)
                      |+.|++.++....       ...+..+++|+.|+++++.-.. ..     .+..+++|++|++++|.+.+          
T Consensus       201 L~~L~l~~n~l~~-------~~~~~~~~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~----------  257 (347)
T 4fmz_A          201 LHYFTAYVNQITD-------ITPVANMTRLNSLKIGNNKITD-LS-----PLANLSQLTWLEIGTNQISD----------  257 (347)
T ss_dssp             CCEEECCSSCCCC-------CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC----------
T ss_pred             cceeecccCCCCC-------CchhhcCCcCCEEEccCCccCC-Cc-----chhcCCCCCEEECCCCccCC----------
Confidence            9999998876553       2237889999999999864322 11     17889999999999998321          


Q ss_pred             hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCcc
Q 037465          299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNE  376 (432)
Q Consensus       299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~  376 (432)
                            ...+..+++|++|++++|....+ .++..+++|+.|++++|......+ .++.++ |+.|++++|+ ++.++. 
T Consensus       258 ------~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-  328 (347)
T 4fmz_A          258 ------INAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-  328 (347)
T ss_dssp             ------CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-
T ss_pred             ------ChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-
Confidence                  24577889999999999988875 467899999999999997655444 467899 9999999998 776654 


Q ss_pred             ccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465          377 FLGIEESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                       .           ..+++|++|++++|+
T Consensus       329 -~-----------~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          329 -L-----------ASLSKMDSADFANQV  344 (347)
T ss_dssp             -G-----------GGCTTCSEESSSCC-
T ss_pred             -h-----------hhhhccceeehhhhc
Confidence             1           248999999999986

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.4e-25  Score=232.47  Aligned_cols=300  Identities=15%  Similarity=0.192  Sum_probs=227.9

Q ss_pred             CCceEEEEeecCCCCC-CCccccccCcccEEEEecCCcCccCccC-CcchhhhccCC-------cceEEEeCCCCCCCCC
Q 037465           60 GGKVRHLGLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNG-SILPELFSKLA-------CLRALVISQSSSFSHP  130 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~-------~L~~L~L~~~~~~~~~  130 (432)
                      .++++.|.+.++.+.. +|..+.++++|++|++++|+    .+++ . +|..+..++       +|++|++++       
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~----~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~-------  557 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR----GISAAQ-LKADWTRLADDEDTGPKIQIFYMGY-------  557 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT----TSCHHH-HHHHHHHHHHCTTTTTTCCEEECCS-------
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC----Cccccc-chHHHHhhhhcccccCCccEEEeeC-------
Confidence            6789999999987555 89899999999999999994    1444 3 454455554       999999999       


Q ss_pred             CCCcccccCc--cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccc-cceEEcCCCCccc
Q 037465          131 GPNLITEIPE--NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMN-MRSLLNDNTRSLK  207 (432)
Q Consensus       131 ~~~~~~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~  207 (432)
                        +.+..+|.  .++++++|++|++++|.+..+| .++.+++|+.|++++|. +..+|..+..+++ |+.|++++|... 
T Consensus       558 --N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-  632 (876)
T 4ecn_A          558 --NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-  632 (876)
T ss_dssp             --SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-
T ss_pred             --CcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-
Confidence              66778888  8999999999999999988888 88999999999999998 5588888889988 999999999644 


Q ss_pred             cCCccCCcccc--cccccceEecccccC-CC----------------------CcCccc-cccCccCCceeeCCCCCCCC
Q 037465          208 YMPIGISKLTS--LRTLGKFVVGGGVDG-SS----------------------TCRLES-LKNLQLLRECGIEGLGNVSH  261 (432)
Q Consensus       208 ~~p~~l~~l~~--L~~L~l~~~~~~~~~-~~----------------------~~~~~~-l~~l~~L~~L~l~~~~~~~~  261 (432)
                      .+|..+..++.  |+.|++.++...... ..                      ...+.. +..+++|+.|+++++.- ..
T Consensus       633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~  711 (876)
T 4ecn_A          633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TS  711 (876)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SC
T ss_pred             cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-Cc
Confidence            77776665543  778877777653210 00                      001111 23567788888876432 22


Q ss_pred             chhhhhc----ccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCC--CCCCCcEEEEeeeCCCCCChhhhccC
Q 037465          262 LDEAERL----QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQ--PPVNVEELWIVYYGGNIFPKWLTSLT  335 (432)
Q Consensus       262 ~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~l~~l~  335 (432)
                      .+.....    .++.+++|+.|++++|.+.               .++..+.  .+++|+.|++++|....+|..+..++
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------------~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~  776 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------------SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS  776 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC---------------CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCT
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc---------------cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCC
Confidence            2211111    1334569999999999832               4555665  88999999999999988999999999


Q ss_pred             CCcEEEEeC------CCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccc
Q 037465          336 NLRNLYLSS------CFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLE  407 (432)
Q Consensus       336 ~L~~L~l~~------~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~  407 (432)
                      +|+.|++++      |...+.+| .++.++ |+.|+|++|. ++.+|..              .+++|+.|++++||-..
T Consensus       777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~--------------l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK--------------LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--------------CCSSSCEEECCSCTTCE
T ss_pred             CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh--------------hcCCCCEEECCCCCCCc
Confidence            999999987      55566666 578899 9999999998 6888664              35799999999998543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=2.6e-25  Score=218.85  Aligned_cols=315  Identities=17%  Similarity=0.112  Sum_probs=209.7

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~  143 (432)
                      .+...+.++..+|. +  .++|++|++++|.+     .+. .+..+..+++|++|++++|        .....+ +..+.
T Consensus        14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~L~~n--------~~~~~i~~~~~~   76 (455)
T 3v47_A           14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSI-----AEL-NETSFSRLQDLQFLKVEQQ--------TPGLVIRNNTFR   76 (455)
T ss_dssp             EEECCSSCCSSCCC-C--CTTCCEEECCSSCC-----CEE-CTTTTSSCTTCCEEECCCC--------STTCEECTTTTT
T ss_pred             ccCcCCCCcccCCC-C--CCccCEEEecCCcc-----CcC-ChhHhccCccccEEECcCC--------cccceECccccc
Confidence            35666777777777 3  37899999999954     333 4666999999999999994        223355 56789


Q ss_pred             CCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChh--hhcccccceEEcCCCCccccCCcc-CCccccc
Q 037465          144 KLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAG--IGKLMNMRSLLNDNTRSLKYMPIG-ISKLTSL  219 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L  219 (432)
                      .+++|++|++++|.+..+ |..++.+++|++|++++|...+..|..  +..+++|++|++++|......|.. ++.+++|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            999999999999998866 678999999999999999855545544  888999999999999776666765 7899999


Q ss_pred             ccccceEecccccCCCCcCccccc----------------------------------cCccCCceeeCCCCCCCCchhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLK----------------------------------NLQLLRECGIEGLGNVSHLDEA  265 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~----------------------------------~l~~L~~L~l~~~~~~~~~~~~  265 (432)
                      ++|++.++.....     .+..+.                                  .+++|+.|+++++.-....+..
T Consensus       157 ~~L~L~~n~l~~~-----~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          157 HVLDLTFNKVKSI-----CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             CEEECTTCCBSCC-----CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             cEEeCCCCccccc-----ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence            9999998876531     122222                                  2245555555553221100000


Q ss_pred             hhc---------------------------------ccc--cccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCC
Q 037465          266 ERL---------------------------------QLY--NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP  310 (432)
Q Consensus       266 ~~~---------------------------------~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (432)
                      ...                                 .+.  ..++|+.|++++|.              .....+..+..
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--------------l~~~~~~~~~~  297 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK--------------IFALLKSVFSH  297 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC--------------CCEECTTTTTT
T ss_pred             hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc--------------ccccchhhccc
Confidence            000                                 000  11455666666555              22333455667


Q ss_pred             CCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCC
Q 037465          311 PVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDD  387 (432)
Q Consensus       311 ~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  387 (432)
                      +++|++|++++|....+ |.++..+++|+.|++++|......+ .++.++ |++|++++|. ++.++...+         
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---------  367 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSF---------  367 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTT---------
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhc---------
Confidence            77888888877776654 4566678888888888885544333 356777 8888888876 565543332         


Q ss_pred             CCCCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCCC
Q 037465          388 PSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSPD  432 (432)
Q Consensus       388 ~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (432)
                        ..+++|++|++++|. ++.+..    ..+..++++..+.++++
T Consensus       368 --~~l~~L~~L~L~~N~-l~~~~~----~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          368 --LGLPNLKELALDTNQ-LKSVPD----GIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             --TTCTTCCEEECCSSC-CSCCCT----TTTTTCTTCCEEECCSS
T ss_pred             --cccccccEEECCCCc-cccCCH----hHhccCCcccEEEccCC
Confidence              247889999998874 443322    12344455555655543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=8.5e-26  Score=211.07  Aligned_cols=250  Identities=21%  Similarity=0.202  Sum_probs=156.1

Q ss_pred             CceEEEEeecCCCCC---CCccccccCcccEEEEec-CCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465           61 GKVRHLGLNFEGGAP---LPMSFFEFDRLRSLLIYD-ESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT  136 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  136 (432)
                      .+++.|++.++.+..   +|..+.++++|++|++++ |     .+.+. ++..+..+++|++|++++         +.+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-----~l~~~-~p~~l~~l~~L~~L~Ls~---------n~l~  114 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGP-IPPAIAKLTQLHYLYITH---------TNVS  114 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-----TEESC-CCGGGGGCTTCSEEEEEE---------ECCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-----ccccc-CChhHhcCCCCCEEECcC---------CeeC
Confidence            456666666666553   556666666666666663 4     33333 333466666666666666         3343


Q ss_pred             -ccCccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccccCChhhhccc-ccceEEcCCCCccccCCccC
Q 037465          137 -EIPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM-NMRSLLNDNTRSLKYMPIGI  213 (432)
Q Consensus       137 -~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~l  213 (432)
                       .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..++.++ +|+.|++++|...+..|..+
T Consensus       115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence             45556666666666666666655 5555666666666666666664445666666665 66666666665544555555


Q ss_pred             CcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHH
Q 037465          214 SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEE  293 (432)
Q Consensus       214 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  293 (432)
                      +.++ |+.|++.++....                                 ..+..+..+++|+.|++++|.+       
T Consensus       195 ~~l~-L~~L~Ls~N~l~~---------------------------------~~~~~~~~l~~L~~L~L~~N~l-------  233 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEG---------------------------------DASVLFGSDKNTQKIHLAKNSL-------  233 (313)
T ss_dssp             GGCC-CSEEECCSSEEEE---------------------------------CCGGGCCTTSCCSEEECCSSEE-------
T ss_pred             hCCc-ccEEECcCCcccC---------------------------------cCCHHHhcCCCCCEEECCCCce-------
Confidence            5554 5555555444331                                 1223344556666666666652       


Q ss_pred             HhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccccccc
Q 037465          294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVK  371 (432)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~  371 (432)
                             .. ....+..+++|++|++++|... .+|.++..+++|+.|++++|...+.+|..+.++ |+.|++.+++.+.
T Consensus       234 -------~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          234 -------AF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             -------CC-BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             -------ee-ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence                   11 1122556677888888777776 568888899999999999998777888878889 9999999988666


Q ss_pred             ccC
Q 037465          372 RVG  374 (432)
Q Consensus       372 ~~~  374 (432)
                      ..|
T Consensus       306 ~~p  308 (313)
T 1ogq_A          306 GSP  308 (313)
T ss_dssp             STT
T ss_pred             CCC
Confidence            543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=6.9e-25  Score=223.73  Aligned_cols=272  Identities=18%  Similarity=0.125  Sum_probs=187.7

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..++. .|.++++|++|++++|.+     +.. .+..|..+++|++|++++         +.+..+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~i-~~~~~~~l~~L~~L~Ls~---------n~l~~~   95 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-----ETI-EDKAWHGLHHLSNLILTG---------NPIQSF   95 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----CEE-CTTTTTTCTTCCEEECTT---------CCCCCC
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc-----ccc-CHHHhhchhhcCEeECCC---------Cccccc
Confidence            5789999999999888554 788999999999999954     332 456689999999999999         567776


Q ss_pred             -CccccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCc
Q 037465          139 -PENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       139 -p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                       |..++++++|++|++++|.+..++ ..++.+++|++|++++|.... .+|..++.+++|++|++++|......|..++.
T Consensus        96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  175 (606)
T 3vq2_A           96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF  175 (606)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred             ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence             788999999999999999988776 578999999999999998443 57888999999999999999666555566666


Q ss_pred             ccccc----cccceEecccccCCCCcCccccccCccCCceeeCCCCCC--------------------------------
Q 037465          216 LTSLR----TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV--------------------------------  259 (432)
Q Consensus       216 l~~L~----~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------------------  259 (432)
                      +++|+    .|++..+....      .........+|+.+++++....                                
T Consensus       176 l~~L~~~l~~L~l~~n~l~~------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~  249 (606)
T 3vq2_A          176 LRENPQVNLSLDMSLNPIDF------IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI  249 (606)
T ss_dssp             HHHCTTCCCEEECTTCCCCE------ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             hhccccccceeeccCCCcce------eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence            66654    46655554432      1111111113444444332110                                


Q ss_pred             ----------------------CCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEE
Q 037465          260 ----------------------SHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEEL  317 (432)
Q Consensus       260 ----------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  317 (432)
                                            .......+. +..+++|+.|+++++.+               ..++ .+..+++|++|
T Consensus       250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~---------------~~l~-~l~~~~~L~~L  312 (606)
T 3vq2_A          250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI---------------KYLE-DVPKHFKWQSL  312 (606)
T ss_dssp             CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC---------------CCCC-CCCTTCCCSEE
T ss_pred             cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc---------------hhhh-hccccccCCEE
Confidence                                  011111222 56667777777777762               1122 56667778888


Q ss_pred             EEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccccccccc
Q 037465          318 WIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRV  373 (432)
Q Consensus       318 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~  373 (432)
                      ++.+|....+|.+  .+++|+.|++++|...... .++.++ |+.|++++|. ++.+
T Consensus       313 ~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~  365 (606)
T 3vq2_A          313 SIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFS  365 (606)
T ss_dssp             EEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEE
T ss_pred             EcccccCcccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCC
Confidence            8887777766744  7778888888777544444 345677 7777777765 4444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=4.2e-24  Score=210.85  Aligned_cols=144  Identities=19%  Similarity=0.278  Sum_probs=60.3

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+++.|+++++.+..++. +.++++|++|++++|.+     .+  .+. +..+++|++|++++         +.++.++.
T Consensus        68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-----~~--~~~-~~~l~~L~~L~L~~---------n~l~~~~~  129 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-----AD--ITP-LANLTNLTGLTLFN---------NQITDIDP  129 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-----CC--CGG-GTTCTTCCEEECCS---------SCCCCCGG
T ss_pred             cCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-----cc--Chh-hcCCCCCCEEECCC---------CCCCCChH
Confidence            344444444444444333 44444444444444422     11  111 44445555555554         33333332


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                       +..+++|++|++++|.+..++ .+..+++|++|++.+ . ...++ .+..+++|+.|++++|.. ..++ .+..+++|+
T Consensus       130 -~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~  202 (466)
T 1o6v_A          130 -LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNKV-SDIS-VLAKLTNLE  202 (466)
T ss_dssp             -GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCS
T ss_pred             -HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCcC-CCCh-hhccCCCCC
Confidence             444555555555554444333 122222222222211 0 11111 144455566666665532 2222 244555555


Q ss_pred             cccceEecc
Q 037465          221 TLGKFVVGG  229 (432)
Q Consensus       221 ~L~l~~~~~  229 (432)
                      +|++.++..
T Consensus       203 ~L~l~~n~l  211 (466)
T 1o6v_A          203 SLIATNNQI  211 (466)
T ss_dssp             EEECCSSCC
T ss_pred             EEEecCCcc
Confidence            555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=3.7e-24  Score=211.21  Aligned_cols=188  Identities=19%  Similarity=0.172  Sum_probs=148.2

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.+++.++.+..++. +..+++|++|++++|.+     .+  ++. +..+++|++|++++         +.+..++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l-----~~--~~~-~~~l~~L~~L~l~~---------n~l~~~~  106 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL-----TD--ITP-LKNLTKLVDILMNN---------NQIADIT  106 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCC-----CC--CGG-GTTCTTCCEEECCS---------SCCCCCG
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCcc-----CC--chh-hhccccCCEEECCC---------CccccCh
Confidence            4679999999999988764 78899999999999954     33  333 89999999999999         6677776


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      . +.++++|++|++++|.+..++. +..+++|++|++++|. +..++ .++.+++|+.|++.++  ....+ .++.+++|
T Consensus       107 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L  179 (466)
T 1o6v_A          107 P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ--VTDLK-PLANLTTL  179 (466)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES--CCCCG-GGTTCTTC
T ss_pred             h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc--ccCch-hhccCCCC
Confidence            5 9999999999999999999875 8999999999999998 66665 5889999999999743  23333 38899999


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      ++|++.++....       ...+..+++|+.|+++++.-....      .+..+++|+.|++++|.
T Consensus       180 ~~L~l~~n~l~~-------~~~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~  232 (466)
T 1o6v_A          180 ERLDISSNKVSD-------ISVLAKLTNLESLIATNNQISDIT------PLGILTNLDELSLNGNQ  232 (466)
T ss_dssp             CEEECCSSCCCC-------CGGGGGCTTCSEEECCSSCCCCCG------GGGGCTTCCEEECCSSC
T ss_pred             CEEECcCCcCCC-------ChhhccCCCCCEEEecCCcccccc------cccccCCCCEEECCCCC
Confidence            999999887553       245777888888888775432211      14556667777776666

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=1.8e-24  Score=220.73  Aligned_cols=146  Identities=15%  Similarity=0.025  Sum_probs=87.0

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      +..++.|+++++.+..+ |..|.++++|++|++++|.+     .. +.+..|..+++|++|++++         +.+..+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-----~~-~~~~~~~~l~~L~~L~Ls~---------n~l~~~   96 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-----YW-IHEDTFQSQHRLDTLVLTA---------NPLIFM   96 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-----CE-ECTTTTTTCTTCCEEECTT---------CCCSEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-----ce-eChhhccCccccCeeeCCC---------Cccccc
Confidence            45778888888877774 55777788888888888743     22 2445577777777777777         444444


Q ss_pred             -CccccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465          139 -PENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       139 -p~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                       |..++++++|++|++++|.+..+ |..++.+++|++|++++|.....-+..+..+++|++|++++|......|..++.+
T Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  176 (606)
T 3t6q_A           97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL  176 (606)
T ss_dssp             CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred             ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence             55666677777777777666655 3456666666666666665222111223335556666665554333333334444


Q ss_pred             cccc
Q 037465          217 TSLR  220 (432)
Q Consensus       217 ~~L~  220 (432)
                      ++|+
T Consensus       177 ~~L~  180 (606)
T 3t6q_A          177 QQAT  180 (606)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            4444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.8e-25  Score=225.87  Aligned_cols=290  Identities=14%  Similarity=0.061  Sum_probs=203.9

Q ss_pred             CCceEEEEeecCCCCCCCcc-ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPMS-FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.+.+.++.+..+|.. +.++++|++|++++|.+     .+. .+..|..+++|++|++++         +.+..+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~  114 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----EEI-DTYAFAYAHTIQKLYMGF---------NAIRYL  114 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-----CCC-ChHHhcCCCCCCEEECCC---------CcCCCC
Confidence            45778888888888777764 57789999999999854     332 455688899999999998         566666


Q ss_pred             C-ccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcc
Q 037465          139 P-ENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       139 p-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                      | ..++.+++|++|++++|.+..+|+. ++.+++|++|++++|......|..++.+++|+.|++++|.... ++  ++.+
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l  191 (597)
T 3oja_B          115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLI  191 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGC
T ss_pred             CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhh
Confidence            4 4568899999999999998888876 4889999999999998555556678889999999999885433 33  4456


Q ss_pred             cccccccceEecccccCCCCcCcccc---------------ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEE
Q 037465          217 TSLRTLGKFVVGGGVDGSSTCRLESL---------------KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHL  281 (432)
Q Consensus       217 ~~L~~L~l~~~~~~~~~~~~~~~~~l---------------~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l  281 (432)
                      ++|+.|++.++.....    ..+..+               ...++|+.|+++++.-. .     ...+..+++|+.|++
T Consensus       192 ~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~-~-----~~~l~~l~~L~~L~L  261 (597)
T 3oja_B          192 PSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDL  261 (597)
T ss_dssp             TTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCC-C-----CGGGGGCTTCSEEEC
T ss_pred             hhhhhhhcccCccccc----cCCchhheeeccCCcccccccccCCCCCEEECCCCCCC-C-----ChhhccCCCCCEEEC
Confidence            6677766665543320    000000               01135666666654321 1     245667788888888


Q ss_pred             eeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cc
Q 037465          282 EFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LE  360 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~  360 (432)
                      ++|.              .....+..+..+++|+.|++++|....+|.....+++|+.|++++|......+.++.++ |+
T Consensus       262 s~N~--------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          262 SYNE--------------LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  327 (597)
T ss_dssp             CSSC--------------CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             CCCc--------------cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence            8877              23334556777888888888888777777666678888888888885543333456678 88


Q ss_pred             eEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465          361 KLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLL  406 (432)
Q Consensus       361 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L  406 (432)
                      .|++++|. ++.++.              ..+++|+.|++++||--
T Consensus       328 ~L~L~~N~-l~~~~~--------------~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          328 NLYLDHNS-IVTLKL--------------STHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             EEECCSSC-CCCCCC--------------CTTCCCSEEECCSSCEE
T ss_pred             EEECCCCC-CCCcCh--------------hhcCCCCEEEeeCCCCC
Confidence            88888887 555532              35889999999998743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=4e-24  Score=216.00  Aligned_cols=126  Identities=18%  Similarity=0.140  Sum_probs=86.2

Q ss_pred             CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..++ ..|.++++|++|++++|.+     ++. .+..|..+++|++|++++         +.++.+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~l  115 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-----RSL-DFHVFLFNQDLEYLDVSH---------NRLQNI  115 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-----CcC-CHHHhCCCCCCCEEECCC---------CcCCcc
Confidence            467777888877777755 4677778888888887743     222 345577778888888887         566677


Q ss_pred             CccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCChhhhccccc--ceEEcCCCCc
Q 037465          139 PENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM--RSLLNDNTRS  205 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~  205 (432)
                      |..  .+++|++|++++|.+..+|  ..++.+++|++|++++|....   ..+..+++|  +.|++++|..
T Consensus       116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred             Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence            765  6778888888888777553  577777888888887776322   234444444  7777766654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=4.6e-24  Score=225.35  Aligned_cols=300  Identities=17%  Similarity=0.117  Sum_probs=214.2

Q ss_pred             cCCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           59 FGGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        59 ~~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      .+++++.|+++++.+..+ +..|.++++|++|++++|     .....+.+..|..+++|++|+|++         +.+..
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-----~~~~~i~~~~f~~L~~L~~L~Ls~---------N~l~~   87 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-----YTPLTIDKEAFRNLPNLRILDLGS---------SKIYF   87 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-----CCCCEECTTTTSSCTTCCEEECTT---------CCCCE
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-----CCccccCHHHhcCCCCCCEEECCC---------CcCcc
Confidence            378899999999999884 678999999999999999     344554567799999999999999         56666


Q ss_pred             c-CccccCCccccEEEeCCccccc-cchh--hhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCcc
Q 037465          138 I-PENVGKLIHLKYLNLSGLCIKR-LPET--LCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIG  212 (432)
Q Consensus       138 l-p~~~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~  212 (432)
                      + |..++++++|++|++++|.+.. +|..  +..+++|++|++++|......+ ..++.+++|++|++++|......+..
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            6 8889999999999999999874 5554  8899999999999998544333 56899999999999999777777777


Q ss_pred             CCcc--cccccccceEecccccCCCCcCccccccCc------cCCceeeCCCCCCCCchhhh------------------
Q 037465          213 ISKL--TSLRTLGKFVVGGGVDGSSTCRLESLKNLQ------LLRECGIEGLGNVSHLDEAE------------------  266 (432)
Q Consensus       213 l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~------------------  266 (432)
                      ++.+  ++|+.|++..+....     ..+..++.+.      .|+.|+++++.-........                  
T Consensus       168 l~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          168 LEPLQGKTLSFFSLAANSLYS-----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             GHHHHHCSSCCCEECCSBSCC-----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             cccccCCccceEECCCCcccc-----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            7766  788888888776653     2222333333      37777776642111111000                  


Q ss_pred             --------------hccccc--ccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-Ch
Q 037465          267 --------------RLQLYN--QQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PK  329 (432)
Q Consensus       267 --------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~  329 (432)
                                    ...+..  .++|+.|++++|.              ........+..+++|+.|++.+|....+ |.
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~--------------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF--------------VFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC--------------CCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCc--------------ccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence                          111111  2578888887776              2233345667788888888888777654 45


Q ss_pred             hhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCC
Q 037465          330 WLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGC  403 (432)
Q Consensus       330 ~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c  403 (432)
                      .+..+++|+.|++++|......+ .++.++ |+.|++++|. ++.++...+.           .+++|+.|++++|
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~-----------~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFK-----------FLEKLQTLDLRDN  372 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSC-----------SCCCCCEEEEETC
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhc-----------CCCCCCEEECCCC
Confidence            66788888888888886554433 567788 8888888875 6666554332           2556666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=6.2e-25  Score=224.05  Aligned_cols=106  Identities=24%  Similarity=0.358  Sum_probs=69.4

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..+ |..|.++++|++|++++|.+     ... .+..|..+++|++|++++         +.+..+
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-----~~~-~p~~~~~l~~L~~L~L~~---------n~l~~~  119 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-----QSF-SPGSFSGLTSLENLVAVE---------TKLASL  119 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-----CCC-CTTSSTTCTTCCEEECTT---------SCCCCS
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-----ccc-ChhhcCCcccCCEEEccC---------Cccccc
Confidence            45777777777777764 45677777778887777743     222 345577777777777777         445554


Q ss_pred             C-ccccCCccccEEEeCCcccc--ccchhhhccCCccEEeccccc
Q 037465          139 P-ENVGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       139 p-~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~  180 (432)
                      + ..++++++|++|++++|.+.  .+|..++++++|++|++++|.
T Consensus       120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            3 45666666777777666655  356666666666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=5.5e-25  Score=224.45  Aligned_cols=298  Identities=20%  Similarity=0.165  Sum_probs=222.1

Q ss_pred             ceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-C
Q 037465           62 KVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-P  139 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p  139 (432)
                      .++.+.+.++.+..++. .|.++++|++|++++|.++      . +|..+..+++|++|++++         +.++.+ |
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~-lp~~l~~l~~L~~L~l~~---------n~l~~~~~  318 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------E-LPSGLVGLSTLKKLVLSA---------NKFENLCQ  318 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS------C-CCSSCCSCTTCCEEECTT---------CCCSBGGG
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC------C-CChhhcccccCCEEECcc---------CCcCcCch
Confidence            68888888888887555 4788899999999998542      2 455578889999999998         556665 5


Q ss_pred             ccccCCccccEEEeCCcccc-ccch-hhhccCCccEEecccccccccC--ChhhhcccccceEEcCCCCccccCCccCCc
Q 037465          140 ENVGKLIHLKYLNLSGLCIK-RLPE-TLCELYNLQKLDIRWCRNLREL--PAGIGKLMNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~-~lp~-~i~~l~~L~~L~l~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                      ..+..+++|++|++++|.+. .+|. .+..+++|++|++++|......  |..++.+++|++|++++|......|..++.
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence            67888899999999998865 6654 4788899999999988843332  667888899999999998776666777888


Q ss_pred             ccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHh
Q 037465          216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERR  295 (432)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  295 (432)
                      +++|++|++.++....    ......+..+++|+.|+++++.-    ....+..+..+++|++|++++|.+.++.     
T Consensus       399 l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----  465 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKV----KDAQSPFQNLHLLKVLNLSHSLL----DISSEQLFDGLPALQHLNLQGNHFPKGN-----  465 (606)
T ss_dssp             CTTCSEEECTTCCEEC----CTTCCTTTTCTTCCEEECTTCCC----BTTCTTTTTTCTTCCEEECTTCBCGGGE-----
T ss_pred             CccCCeEECCCCcCCC----cccchhhhCcccCCEEECCCCcc----CCcCHHHHhCCCCCCEEECCCCCCCccc-----
Confidence            8999999988876653    22233477888899999887532    2233455777889999999988732110     


Q ss_pred             hhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccc
Q 037465          296 RKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKR  372 (432)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~  372 (432)
                            ......+..+++|+.|++++|....+ |.++..+++|+.|++++|......| .++.++ | .|++++|. ++.
T Consensus       466 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~  537 (606)
T 3t6q_A          466 ------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISI  537 (606)
T ss_dssp             ------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCC
T ss_pred             ------cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccc
Confidence                  01124567788999999998877664 5677789999999999997665444 577788 8 99999987 666


Q ss_pred             cCccccCCCCCCCCCCCCCCCCcceEEEeCCcccc
Q 037465          373 VGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLE  407 (432)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~  407 (432)
                      ++...++           .+++|+.|++++||--.
T Consensus       538 ~~~~~~~-----------~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          538 ILPSLLP-----------ILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CCGGGHH-----------HHHTSSEEECTTCCEEC
T ss_pred             cCHhhcc-----------cCCCCCEEeCCCCCccc
Confidence            6655433           37899999999988653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=216.12  Aligned_cols=144  Identities=18%  Similarity=0.138  Sum_probs=120.7

Q ss_pred             EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465           64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV  142 (432)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~  142 (432)
                      +.++++++.+..+|..+.  ++|++|++++|.+     .+. .+..|..+++|++|++++         +.++.+ |..+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~   65 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYI-----SEL-WTSDILSLSKLRILIISH---------NRIQYLDISVF   65 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCC-----CCC-CHHHHTTCTTCCEEECCS---------SCCCEEEGGGG
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcc-----ccc-ChhhccccccccEEecCC---------CccCCcChHHh
Confidence            568999999999998776  8999999999954     333 556799999999999999         667777 7789


Q ss_pred             cCCccccEEEeCCccccccchhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCccccc--
Q 037465          143 GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL--  219 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L--  219 (432)
                      +++++|++|++++|.+..+|..  .+++|++|++++|.... .+|..++.+++|++|++++|....   ..++.+++|  
T Consensus        66 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L  140 (520)
T 2z7x_B           66 KFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI  140 (520)
T ss_dssp             TTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred             hcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence            9999999999999999999977  89999999999999544 478899999999999999996544   345566666  


Q ss_pred             ccccceEecc
Q 037465          220 RTLGKFVVGG  229 (432)
Q Consensus       220 ~~L~l~~~~~  229 (432)
                      ++|++.++..
T Consensus       141 ~~L~l~~n~l  150 (520)
T 2z7x_B          141 SKVLLVLGET  150 (520)
T ss_dssp             EEEEEEECTT
T ss_pred             eEEEeecccc
Confidence            7777777655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=7.7e-25  Score=220.69  Aligned_cols=153  Identities=21%  Similarity=0.284  Sum_probs=120.3

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .+.++.|+++++.+..+ +..|.++++|++|++++|++     .+. .+..|..+++|++|++++         +.+..+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~   89 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-----NTI-EGDAFYSLGSLEHLDLSD---------NHLSSL   89 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCSC
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-----Ccc-ChhhccccccCCEEECCC---------CccCcc
Confidence            46899999999988875 56788999999999999954     332 455688999999999999         667777


Q ss_pred             Ccc-ccCCccccEEEeCCccccc--cchhhhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCccCC
Q 037465          139 PEN-VGKLIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIGIS  214 (432)
Q Consensus       139 p~~-~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~  214 (432)
                      +.. ++++++|++|++++|.+..  .|..++.+++|++|++++|.....+| ..+..+++|++|++++|......|..++
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            554 8889999999999999874  46678889999999999987666666 4688889999999998877666777776


Q ss_pred             cccccccccceEe
Q 037465          215 KLTSLRTLGKFVV  227 (432)
Q Consensus       215 ~l~~L~~L~l~~~  227 (432)
                      .+++|++|++..+
T Consensus       170 ~l~~L~~L~l~~n  182 (549)
T 2z81_A          170 SIRDIHHLTLHLS  182 (549)
T ss_dssp             TCSEEEEEEEECS
T ss_pred             ccccCceEecccC
Confidence            6666655555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=4.1e-24  Score=201.46  Aligned_cols=284  Identities=19%  Similarity=0.149  Sum_probs=194.7

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PE  140 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~  140 (432)
                      +++.+.+.++.+..+|..+.  ++|++|++++|.+     .. ..+..+..+++|++|++++         +.++.+ |.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i-----~~-~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~   96 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDI-----SE-LRKDDFKGLQHLYALVLVN---------NKISKIHEK   96 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-----CE-ECTTTTTTCTTCCEEECCS---------SCCCEECGG
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcC-----Cc-cCHhHhhCCCCCcEEECCC---------CccCccCHh
Confidence            45678888888888887663  6899999999854     22 2455588899999999998         566666 67


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc--cCCccCCccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK--YMPIGISKLT  217 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~  217 (432)
                      .+.++++|++|++++|.+..+|..+.  ++|++|++++|. +..+|. .+..+++|+.|++++|....  ..+..+..+ 
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-  172 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-  172 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred             HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence            78889999999999999888887665  789999999988 555554 47788999999999886532  455666666 


Q ss_pred             ccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhh
Q 037465          218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK  297 (432)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  297 (432)
                      +|+.|++.++....      .+..+.  ++|+.|++++..-    ....+..+..+++|+.|++++|.+.+         
T Consensus       173 ~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~~n~i----~~~~~~~l~~l~~L~~L~L~~N~l~~---------  231 (332)
T 2ft3_A          173 KLNYLRISEAKLTG------IPKDLP--ETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRM---------  231 (332)
T ss_dssp             CCSCCBCCSSBCSS------CCSSSC--SSCSCCBCCSSCC----CCCCTTSSTTCTTCSCCBCCSSCCCC---------
T ss_pred             ccCEEECcCCCCCc------cCcccc--CCCCEEECCCCcC----CccCHHHhcCCCCCCEEECCCCcCCc---------
Confidence            88888888776653      222222  5777877776422    11223456777888888888887322         


Q ss_pred             hhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CCC------Ccc-cceEecccccc
Q 037465          298 KEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLG------KLP-LEKLTLYNLKS  369 (432)
Q Consensus       298 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~------~l~-L~~L~l~~c~~  369 (432)
                           .....+..+++|+.|++++|....+|.++..+++|+.|++++|......+ .+.      ..+ |+.|++.+++ 
T Consensus       232 -----~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-  305 (332)
T 2ft3_A          232 -----IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-  305 (332)
T ss_dssp             -----CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-
T ss_pred             -----CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-
Confidence                 22234566778888888887777777777788888888888875433211 121      145 7788888877 


Q ss_pred             cc--ccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465          370 VK--RVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       370 l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                      +.  .++...+.           .+++|+.+++++|.
T Consensus       306 ~~~~~~~~~~~~-----------~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          306 VPYWEVQPATFR-----------CVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCGGGSCGGGGT-----------TBCCSTTEEC----
T ss_pred             ccccccCccccc-----------ccchhhhhhccccc
Confidence            33  23322221           36777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=6.8e-24  Score=199.80  Aligned_cols=262  Identities=18%  Similarity=0.132  Sum_probs=171.4

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PE  140 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~  140 (432)
                      +++.+++.+..+..+|..+.  ++|++|++++|.+     ++. .+..+..+++|++|++++         +.++.+ |.
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~   94 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKI-----TEI-KDGDFKNLKNLHTLILIN---------NKISKISPG   94 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCC-----CCB-CTTTTTTCTTCCEEECCS---------SCCCCBCTT
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcC-----CEe-ChhhhccCCCCCEEECCC---------CcCCeeCHH
Confidence            45667777777777777653  6788899988854     332 444588888999999988         566666 77


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccc--cCCccCCcccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLK--YMPIGISKLTS  218 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~  218 (432)
                      .+..+++|++|++++|.++.+|..+.  ++|++|++++|......+..+..+++|+.|++++|....  ..+..+..+++
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  172 (330)
T 1xku_A           95 AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  172 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             HhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence            78888999999999888888887654  788999998887444344457788889999988886532  44566777888


Q ss_pred             cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465          219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK  298 (432)
Q Consensus       219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (432)
                      |++|++.++....      .+..+  .++|+.|++++..    .....+..+..+++|+.|++++|.+.           
T Consensus       173 L~~L~l~~n~l~~------l~~~~--~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------  229 (330)
T 1xku_A          173 LSYIRIADTNITT------IPQGL--PPSLTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSIS-----------  229 (330)
T ss_dssp             CCEEECCSSCCCS------CCSSC--CTTCSEEECTTSC----CCEECTGGGTTCTTCCEEECCSSCCC-----------
T ss_pred             cCEEECCCCcccc------CCccc--cccCCEEECCCCc----CCccCHHHhcCCCCCCEEECCCCcCc-----------
Confidence            8888887765543      11111  1567777776632    11222344566677777777776621           


Q ss_pred             hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC-CC------CCcc-cceEeccccc
Q 037465          299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP-PL------GKLP-LEKLTLYNLK  368 (432)
Q Consensus       299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~------~~l~-L~~L~l~~c~  368 (432)
                         ......+..+++|++|++++|....+|.++..+++|+.|++++|......+ .+      ...+ |+.|++.+++
T Consensus       230 ---~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          230 ---AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             ---EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ---eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence               112234455666677777666666666666666677777776664332111 11      1235 6666666666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=4.4e-24  Score=220.70  Aligned_cols=156  Identities=21%  Similarity=0.218  Sum_probs=127.5

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..++. .|.++++|++|++++|.+     .+. .+..+..+++|++|++++         +.+..+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l   88 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-----SKL-EPELCQKLPMLKVLNLQH---------NELSQL   88 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-----CCC-CTTHHHHCTTCCEEECCS---------SCCCCC
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-----Ccc-CHHHHhcccCcCEEECCC---------CccCcc
Confidence            5789999999999988665 689999999999999954     343 566689999999999999         678888


Q ss_pred             Cc-cccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCC--
Q 037465          139 PE-NVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGIS--  214 (432)
Q Consensus       139 p~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~--  214 (432)
                      |. .|+++++|++|++++|.+..+| ..++.+++|++|++++|......|..++.+++|++|++++|......+..++  
T Consensus        89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  168 (680)
T 1ziw_A           89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF  168 (680)
T ss_dssp             CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred             ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence            76 5899999999999999988887 4789999999999999986566677788899999999999865444444333  


Q ss_pred             cccccccccceEeccc
Q 037465          215 KLTSLRTLGKFVVGGG  230 (432)
Q Consensus       215 ~l~~L~~L~l~~~~~~  230 (432)
                      .+++|++|++.++...
T Consensus       169 ~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIK  184 (680)
T ss_dssp             TTCEESEEECTTCCCC
T ss_pred             ccccccEEECCCCccc
Confidence            4578888888877554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=4.1e-24  Score=209.75  Aligned_cols=253  Identities=15%  Similarity=0.142  Sum_probs=196.5

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      .++++.|+++++.+..+| .+..+++|++|++++|.++.       ++  +..+++|++|++++         +.++.++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~---------N~l~~~~  101 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDS---------NKLTNLD  101 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCS---------SCCSCCC
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcC---------CCCceee
Confidence            578999999999998876 68999999999999996533       22  78899999999999         5677775


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                        ++.+++|++|++++|.+..+|  ++.+++|++|++++|. +..++  ++.+++|++|++++|...+.+  .++.+++|
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence              889999999999999998886  8899999999999998 55564  788999999999999776666  37789999


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      +.|++.++....       .+ ++.+++|+.|+++++.- ...      .+..+++|+.|++++|.+.            
T Consensus       173 ~~L~ls~n~l~~-------l~-l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~------------  225 (457)
T 3bz5_A          173 TTLDCSFNKITE-------LD-VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT------------  225 (457)
T ss_dssp             CEEECCSSCCCC-------CC-CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS------------
T ss_pred             CEEECCCCccce-------ec-cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCccc------------
Confidence            999998887653       12 77888999999887432 221      3778899999999999831            


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEE----------EEeCCCCCCCCCCCCCcc-cceEeccccc
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNL----------YLSSCFNCEHLPPLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L----------~l~~~~~~~~l~~~~~l~-L~~L~l~~c~  368 (432)
                        . ++  +..+++|+.|++++|....+|  ...+++|+.|          ++++|...+.+| .+.++ |+.|++++|.
T Consensus       226 --~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          226 --E-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNT  297 (457)
T ss_dssp             --C-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCT
T ss_pred             --c-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCc
Confidence              1 22  677889999999988877655  3345555544          444444444444 45678 8888888888


Q ss_pred             cccccCc
Q 037465          369 SVKRVGN  375 (432)
Q Consensus       369 ~l~~~~~  375 (432)
                      .++.++.
T Consensus       298 ~l~~l~~  304 (457)
T 3bz5_A          298 QLYLLDC  304 (457)
T ss_dssp             TCCEEEC
T ss_pred             ccceecc
Confidence            7777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=7.6e-24  Score=204.18  Aligned_cols=289  Identities=15%  Similarity=0.091  Sum_probs=203.8

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCcccc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIK  159 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~  159 (432)
                      ..+++++.|+++++.+      ..+++..+..+++|++|++++         +.++.++ ..+..+++|++|++++|.+.
T Consensus        42 ~~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~  106 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLND---------LQIEEIDTYAFAYAHTIQKLYMGFNAIR  106 (390)
T ss_dssp             GGGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccCCceEEEecCCch------hhCChhHhcccccCcEEECCC---------CcccccChhhccCCCCcCEEECCCCCCC
Confidence            4578999999999954      333556689999999999999         6677775 48899999999999999999


Q ss_pred             ccch-hhhccCCccEEecccccccccCChhh-hcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCc
Q 037465          160 RLPE-TLCELYNLQKLDIRWCRNLRELPAGI-GKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTC  237 (432)
Q Consensus       160 ~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~  237 (432)
                      .+|+ .++.+++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|++.++....     .
T Consensus       107 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~  180 (390)
T 3o6n_A          107 YLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V  180 (390)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----C
T ss_pred             cCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----c
Confidence            8765 58999999999999998 77787764 789999999999997766666778999999999999887653     1


Q ss_pred             CccccccCccCCceeeCCCCCCCCchh-------------hhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhh
Q 037465          238 RLESLKNLQLLRECGIEGLGNVSHLDE-------------AERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQL  304 (432)
Q Consensus       238 ~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  304 (432)
                         .++.+++|+.+++++..- .....             .........++|+.|++++|.+.+                
T Consensus       181 ---~~~~l~~L~~L~l~~n~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~----------------  240 (390)
T 3o6n_A          181 ---DLSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD----------------  240 (390)
T ss_dssp             ---CGGGCTTCSEEECCSSCC-SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC----------------
T ss_pred             ---ccccccccceeecccccc-cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc----------------
Confidence               244555666665554211 00000             000001223567777777776321                


Q ss_pred             hhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCC
Q 037465          305 LKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEE  382 (432)
Q Consensus       305 ~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~  382 (432)
                      ...+..+++|++|++++|....+ |..+..+++|+.|++++|.........+.+| |++|++++|. ++.++..+.    
T Consensus       241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----  315 (390)
T 3o6n_A          241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP----  315 (390)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHH----
T ss_pred             cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcccc----
Confidence            13566678888888888776654 6677788888888888885444333455678 8888888886 776665432    


Q ss_pred             CCCCCCCCCCCCcceEEEeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465          383 SSEDDPSSSSSSSSELSIEGCPLLENRYREGKGEDWHKISHIPHIQMSP  431 (432)
Q Consensus       383 ~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~  431 (432)
                              .+++|+.|++++|+ ++.+       +....+.+..+.+++
T Consensus       316 --------~l~~L~~L~L~~N~-i~~~-------~~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          316 --------QFDRLENLYLDHNS-IVTL-------KLSTHHTLKNLTLSH  348 (390)
T ss_dssp             --------HHTTCSEEECCSSC-CCCC-------CCCTTCCCSEEECCS
T ss_pred             --------ccCcCCEEECCCCc-ccee-------CchhhccCCEEEcCC
Confidence                    36788888888876 3322       133344555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=9.9e-25  Score=203.83  Aligned_cols=226  Identities=14%  Similarity=0.133  Sum_probs=172.4

Q ss_pred             CCceEEEEeec-CCCC-CCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc-
Q 037465           60 GGKVRHLGLNF-EGGA-PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT-  136 (432)
Q Consensus        60 ~~~i~~L~l~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-  136 (432)
                      .++++.|++.+ +.+. .+|..+.++++|++|++++|.     +++. ++..+..+++|++|++++         +.+. 
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~-~p~~~~~l~~L~~L~Ls~---------N~l~~  139 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGA-IPDFLSQIKTLVTLDFSY---------NALSG  139 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEE-CCGGGGGCTTCCEEECCS---------SEEES
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCc-CCHHHhCCCCCCEEeCCC---------CccCC
Confidence            56899999994 7666 478899999999999999994     4444 556699999999999999         5565 


Q ss_pred             ccCccccCCccccEEEeCCcccc-ccchhhhccC-CccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCC
Q 037465          137 EIPENVGKLIHLKYLNLSGLCIK-RLPETLCELY-NLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGIS  214 (432)
Q Consensus       137 ~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~  214 (432)
                      .+|..+..+++|++|++++|.+. .+|..++.++ +|++|++++|...+.+|..+..++ |+.|++++|......|..++
T Consensus       140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence            67999999999999999999988 8999999998 999999999996678999999887 99999999987777888899


Q ss_pred             cccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH
Q 037465          215 KLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER  294 (432)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  294 (432)
                      .+++|+.|++.++....      .+..+..+++|+.|++++                            |.         
T Consensus       219 ~l~~L~~L~L~~N~l~~------~~~~~~~l~~L~~L~Ls~----------------------------N~---------  255 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAF------DLGKVGLSKNLNGLDLRN----------------------------NR---------  255 (313)
T ss_dssp             TTSCCSEEECCSSEECC------BGGGCCCCTTCCEEECCS----------------------------SC---------
T ss_pred             cCCCCCEEECCCCceee------ecCcccccCCCCEEECcC----------------------------Cc---------
Confidence            99999999998876642      223344455555555554                            43         


Q ss_pred             hhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCC
Q 037465          295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEH  350 (432)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~  350 (432)
                           ..+..+..+..+++|+.|++++|... .+|.. ..+++|+.|++.+|+.+..
T Consensus       256 -----l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          256 -----IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -----CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             -----ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence                 11223333444455555555554443 34544 6788888888888864443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=3.3e-23  Score=209.30  Aligned_cols=146  Identities=16%  Similarity=0.119  Sum_probs=119.8

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PE  140 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~  140 (432)
                      ..+.++++++.+..+|..+.  ++|++|++++|.+     .+. .+..|..+++|++|++++         +.++.+ |.
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~~~   94 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSI-----SEL-RMPDISFLSELRVLRLSH---------NRIRSLDFH   94 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCC-----CCC-CGGGTTTCTTCCEEECCS---------CCCCEECTT
T ss_pred             CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCc-----ccc-ChhhhccCCCccEEECCC---------CCCCcCCHH
Confidence            34789999999999998764  8999999999954     333 556699999999999999         677777 67


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      .+.++++|++|++++|.+..+|..  .+++|++|++++|.... .+|..++.+++|++|++++|....   ..+..+++|
T Consensus        95 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L  169 (562)
T 3a79_B           95 VFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHL  169 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTS
T ss_pred             HhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhc
Confidence            799999999999999999999977  89999999999998433 345789999999999999996543   234555555


Q ss_pred             --ccccceEecc
Q 037465          220 --RTLGKFVVGG  229 (432)
Q Consensus       220 --~~L~l~~~~~  229 (432)
                        ++|++..+..
T Consensus       170 ~L~~L~L~~n~l  181 (562)
T 3a79_B          170 HLSCILLDLVSY  181 (562)
T ss_dssp             CEEEEEEEESSC
T ss_pred             eeeEEEeecccc
Confidence              8888877755

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=211.80  Aligned_cols=273  Identities=18%  Similarity=0.152  Sum_probs=195.0

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ...++.|+++++.+..+ +..|.++++|++|++++|.+     .+ +.+..|..+++|++|++++         +.++.+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~~-i~~~~~~~l~~L~~L~L~~---------n~l~~~   91 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QT-IEDGAYQSLSHLSTLILTG---------NPIQSL   91 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-----CE-ECTTTTTTCTTCCEEECTT---------CCCCEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcC-----Cc-cCcccccCchhCCEEeCcC---------CcCCcc
Confidence            56899999999998885 44789999999999999954     33 2456689999999999999         667777


Q ss_pred             C-ccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCCccCCc
Q 037465          139 P-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       139 p-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                      | ..+..+++|++|++++|.+..++. .++.+++|++|++++|.... .+|..++++++|++|++++|......+..++.
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  171 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred             CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence            4 678999999999999999988875 68999999999999998444 47889999999999999999666555666777


Q ss_pred             cccc----ccccceEecccccCCCCcCccccccCccCCceeeCCCCCC---------------------------C----
Q 037465          216 LTSL----RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV---------------------------S----  260 (432)
Q Consensus       216 l~~L----~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---------------------------~----  260 (432)
                      +++|    +.+++..+.....     .+..+..+ +|+.+++.+....                           .    
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~-----~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  245 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFI-----QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  245 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEE-----CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred             hhccchhhhhcccCCCCceec-----CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence            7777    6677666654321     11112211 3444433321000                           0    


Q ss_pred             -----------------------CchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEE
Q 037465          261 -----------------------HLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEEL  317 (432)
Q Consensus       261 -----------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  317 (432)
                                             ......+..+..+++|+.|++++|.+               ..++..+..+ +|++|
T Consensus       246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l---------------~~l~~~~~~~-~L~~L  309 (570)
T 2z63_A          246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---------------ERVKDFSYNF-GWQHL  309 (570)
T ss_dssp             CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE---------------CSCCBCCSCC-CCSEE
T ss_pred             cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc---------------hhhhhhhccC-CccEE
Confidence                                   01112234456678888888888772               2345556666 88888


Q ss_pred             EEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccccccccc
Q 037465          318 WIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRV  373 (432)
Q Consensus       318 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~  373 (432)
                      ++.+|....+|.  ..+++|+.|++++|......+. ..+| |+.|++++|. ++.+
T Consensus       310 ~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~  362 (570)
T 2z63_A          310 ELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFK  362 (570)
T ss_dssp             EEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEE
T ss_pred             eeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcc
Confidence            888887777665  3678888888888865555544 6677 8888888776 4444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=9e-24  Score=213.84  Aligned_cols=133  Identities=22%  Similarity=0.219  Sum_probs=108.2

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..+ +..|.++++|++|++++|++     ... .+..|..+++|++|++++         +.++.+
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l  115 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-----QSL-ALGAFSGLSSLQKLVAVE---------TNLASL  115 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-----CEE-CTTTTTTCTTCCEEECTT---------SCCCCS
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC-----Ccc-CHhhhcCccccccccccc---------cccccC
Confidence            57899999999988885 45789999999999999954     332 456689999999999999         667777


Q ss_pred             Cc-cccCCccccEEEeCCccccc--cchhhhccCCccEEecccccccccCChhhhccccc----ceEEcCCCCccc
Q 037465          139 PE-NVGKLIHLKYLNLSGLCIKR--LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM----RSLLNDNTRSLK  207 (432)
Q Consensus       139 p~-~~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L----~~L~l~~~~~~~  207 (432)
                      +. .++++++|++|++++|.+..  +|..++++++|++|++++|......|..++.+++|    +.|++++|....
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence            54 68999999999999999875  78899999999999999998544445667777777    777887775433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=8.5e-24  Score=213.08  Aligned_cols=282  Identities=18%  Similarity=0.122  Sum_probs=190.9

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~  144 (432)
                      .+..++++..+|..+.  ++|++|++++|.+     ++. .+..+..+++|++|++++         +.++.+ |..+..
T Consensus        10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------n~i~~~~~~~~~~   72 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKI-----TYI-GHGDLRACANLQVLILKS---------SRINTIEGDAFYS   72 (549)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCC-----CEE-CSSTTSSCTTCCEEECTT---------SCCCEECTTTTTT
T ss_pred             EECCCCccccccccCC--CCccEEECcCCcc-----Ccc-ChhhhhcCCcccEEECCC---------CCcCccChhhccc
Confidence            4566778888888764  7899999999954     333 455689999999999999         667776 467999


Q ss_pred             CccccEEEeCCccccccchh-hhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCccccCC-ccCCccccccc
Q 037465          145 LIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRT  221 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~  221 (432)
                      +++|++|++++|.+..+|+. ++.+++|++|++++|.... ..|..++.+++|++|++++|...+.+| ..++.+++|++
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  152 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE  152 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence            99999999999999988765 9999999999999998433 456788999999999999997677776 57899999999


Q ss_pred             ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH-------
Q 037465          222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER-------  294 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------  294 (432)
                      |++.++....     ..+..++.+++|+.|++..... ...+   ...+..+++|+.|++++|.+.+......       
T Consensus       153 L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  223 (549)
T 2z81_A          153 LEIKALSLRN-----YQSQSLKSIRDIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS  223 (549)
T ss_dssp             EEEEETTCCE-----ECTTTTTTCSEEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred             eeccCCcccc-----cChhhhhccccCceEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence            9999887652     3445555666666666554321 1111   1111234444444444444322100000       


Q ss_pred             ----------hhhhhhhHhhhh------------------------------cC--------------------------
Q 037465          295 ----------RRKKEKDEQLLK------------------------------AL--------------------------  308 (432)
Q Consensus       295 ----------~~~~~~~~~~~~------------------------------~l--------------------------  308 (432)
                                .........+..                              .+                          
T Consensus       224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~  303 (549)
T 2z81_A          224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS  303 (549)
T ss_dssp             CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred             cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence                      000000000000                              00                          


Q ss_pred             ---CCCCCCcEEEEeeeCCCCCChhhh-ccCCCcEEEEeCCCCCCCCC----CCCCcc-cceEeccccccccccC
Q 037465          309 ---QPPVNVEELWIVYYGGNIFPKWLT-SLTNLRNLYLSSCFNCEHLP----PLGKLP-LEKLTLYNLKSVKRVG  374 (432)
Q Consensus       309 ---~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~----~~~~l~-L~~L~l~~c~~l~~~~  374 (432)
                         ...++|++|++.++....+|.++. .+++|+.|++++|...+.+|    .++.++ |+.|++++|. ++.++
T Consensus       304 ~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~  377 (549)
T 2z81_A          304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQ  377 (549)
T ss_dssp             HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHH
T ss_pred             hhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccc
Confidence               112457777777777767777764 78899999999986655332    356788 8888888886 66554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.5e-23  Score=195.56  Aligned_cols=90  Identities=26%  Similarity=0.439  Sum_probs=47.3

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccch
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE  163 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~  163 (432)
                      +++++|++++|.+     . . ++..+..+++|++|++++         +.+..+|..++++++|++|++++|.+..+|.
T Consensus        81 ~~l~~L~L~~n~l-----~-~-lp~~l~~l~~L~~L~L~~---------n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~  144 (328)
T 4fcg_A           81 PGRVALELRSVPL-----P-Q-FPDQAFRLSHLQHMTIDA---------AGLMELPDTMQQFAGLETLTLARNPLRALPA  144 (328)
T ss_dssp             TTCCEEEEESSCC-----S-S-CCSCGGGGTTCSEEEEES---------SCCCCCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred             cceeEEEccCCCc-----h-h-cChhhhhCCCCCEEECCC---------CCccchhHHHhccCCCCEEECCCCccccCcH
Confidence            4555555555532     1 1 233344455555555555         3444555555555555555555555555555


Q ss_pred             hhhccCCccEEecccccccccCChhh
Q 037465          164 TLCELYNLQKLDIRWCRNLRELPAGI  189 (432)
Q Consensus       164 ~i~~l~~L~~L~l~~~~~~~~lp~~i  189 (432)
                      .++.+++|++|++++|...+.+|..+
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             HHhcCcCCCEEECCCCCCccccChhH
Confidence            55555555555555555455555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=1e-22  Score=215.01  Aligned_cols=281  Identities=15%  Similarity=0.088  Sum_probs=212.1

Q ss_pred             CCceEEEEeecCCCCC-C-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGAP-L-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      ..+++.|+++++.... + |..|.++++|++|++++|.+     ... .+..|..+++|++|++++|         .+..
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-----~~~-~p~~~~~l~~L~~L~Ls~n---------~l~~  111 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-----YFL-HPDAFQGLFHLFELRLYFC---------GLSD  111 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-----CEE-CTTSSCSCSSCCCEECTTC---------CCSS
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-----ccc-CHhHccCCcccCEeeCcCC---------CCCc
Confidence            6789999999985433 4 77899999999999999954     333 4666999999999999994         4544


Q ss_pred             -cCcc--ccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCChhhhcc--cccceEEcCCCCccccCC
Q 037465          138 -IPEN--VGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPAGIGKL--MNMRSLLNDNTRSLKYMP  210 (432)
Q Consensus       138 -lp~~--~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l--~~L~~L~l~~~~~~~~~p  210 (432)
                       +|..  ++++++|++|++++|.+..++  ..++++++|++|++++|......+..+..+  ++|+.|+++.|......|
T Consensus       112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred             ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence             4554  889999999999999988653  579999999999999998667777888877  899999999998877777


Q ss_pred             ccCCcccc------cccccceEecccccCC--CC-----------------------------cCcccccc--CccCCce
Q 037465          211 IGISKLTS------LRTLGKFVVGGGVDGS--ST-----------------------------CRLESLKN--LQLLREC  251 (432)
Q Consensus       211 ~~l~~l~~------L~~L~l~~~~~~~~~~--~~-----------------------------~~~~~l~~--l~~L~~L  251 (432)
                      ..++.+++      |+.|+++++.......  ..                             .....+..  .++|+.|
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L  271 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL  271 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred             cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence            77776665      9999998874332100  00                             00011111  2567778


Q ss_pred             eeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-Chh
Q 037465          252 GIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKW  330 (432)
Q Consensus       252 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~  330 (432)
                      ++++..-    ....+..+..+++|+.|++++|.+              ....+..+..+++|++|++++|....+ |.+
T Consensus       272 ~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~i--------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          272 DLSHGFV----FSLNSRVFETLKDLKVLNLAYNKI--------------NKIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             ECTTCCC----CEECSCCSSSCCCCCEEEEESCCC--------------CEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             ECCCCcc----cccChhhhhcCCCCCEEECCCCcC--------------CCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence            8776432    223355678899999999999983              333455678889999999999887665 667


Q ss_pred             hhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccC
Q 037465          331 LTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVG  374 (432)
Q Consensus       331 l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~  374 (432)
                      +..+++|+.|++++|......+ .++.++ |+.|++++|. ++.++
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~  378 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH  378 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc
Confidence            8899999999999995543333 477899 9999999987 66554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=1e-22  Score=191.74  Aligned_cols=292  Identities=18%  Similarity=0.174  Sum_probs=217.7

Q ss_pred             cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCcccccc-c
Q 037465           85 RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRL-P  162 (432)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l-p  162 (432)
                      ++++++++++.++.       +|..+  .++|++|++++         +.++.++. .+.++++|++|++++|.+..+ |
T Consensus        32 ~l~~l~~~~~~l~~-------lp~~~--~~~l~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-------VPKDL--PPDTALLDLQN---------NKITEIKDGDFKNLKNLHTLILINNKISKISP   93 (330)
T ss_dssp             ETTEEECTTSCCCS-------CCCSC--CTTCCEEECCS---------SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred             CCeEEEecCCCccc-------cCccC--CCCCeEEECCC---------CcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence            68999999885422       33222  36899999999         67877754 789999999999999999877 6


Q ss_pred             hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465          163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL  242 (432)
Q Consensus       163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  242 (432)
                      ..+..+++|++|++++|. +..+|..+.  ++|++|++++|......+..+..+++|++|++..+.....   ......+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~  167 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAF  167 (330)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---GBCTTGG
T ss_pred             HHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---CcChhhc
Confidence            789999999999999998 778887665  7999999999966555556688999999999998876421   2345678


Q ss_pred             ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeee
Q 037465          243 KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY  322 (432)
Q Consensus       243 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  322 (432)
                      ..+++|+.|+++++.- ...+    ..+  .++|++|++++|.+              ....+..+..+++|++|++++|
T Consensus       168 ~~l~~L~~L~l~~n~l-~~l~----~~~--~~~L~~L~l~~n~l--------------~~~~~~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          168 QGMKKLSYIRIADTNI-TTIP----QGL--PPSLTELHLDGNKI--------------TKVDAASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             GGCTTCCEEECCSSCC-CSCC----SSC--CTTCSEEECTTSCC--------------CEECTGGGTTCTTCCEEECCSS
T ss_pred             cCCCCcCEEECCCCcc-ccCC----ccc--cccCCEEECCCCcC--------------CccCHHHhcCCCCCCEEECCCC
Confidence            8899999999987543 2221    111  27999999999983              2333456788999999999998


Q ss_pred             CCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEE
Q 037465          323 GGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELS  399 (432)
Q Consensus       323 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  399 (432)
                      ....++ .++..+++|+.|++++|... .+| .+..++ |++|++++|. ++.++...++...     +....+.|+.|+
T Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~-----~~~~~~~l~~l~  299 (330)
T 1xku_A          227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG-----YNTKKASYSGVS  299 (330)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS-----CCTTSCCCSEEE
T ss_pred             cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CCccChhhcCCcc-----cccccccccceE
Confidence            887654 47889999999999999655 555 588899 9999999998 8888876654321     112367899999


Q ss_pred             EeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465          400 IEGCPLLENRYREGKGEDWHKISHIPHIQMSP  431 (432)
Q Consensus       400 i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~  431 (432)
                      ++++|--.....   ...+.....+..+.+++
T Consensus       300 l~~N~~~~~~i~---~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          300 LFSNPVQYWEIQ---PSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             CCSSSSCGGGSC---GGGGTTCCCGGGEEC--
T ss_pred             eecCcccccccC---ccccccccceeEEEecc
Confidence            999985321111   12344445555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=1.1e-22  Score=191.81  Aligned_cols=291  Identities=20%  Similarity=0.149  Sum_probs=215.3

Q ss_pred             cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCcccccc-c
Q 037465           85 RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRL-P  162 (432)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l-p  162 (432)
                      +++.++++++.++      . +|..+  .++|++|++++         +.++.+ |..+.++++|++|++++|.+..+ |
T Consensus        34 ~l~~l~~~~~~l~------~-ip~~~--~~~l~~L~l~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   95 (332)
T 2ft3_A           34 HLRVVQCSDLGLK------A-VPKEI--SPDTTLLDLQN---------NDISELRKDDFKGLQHLYALVLVNNKISKIHE   95 (332)
T ss_dssp             ETTEEECCSSCCS------S-CCSCC--CTTCCEEECCS---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             cCCEEECCCCCcc------c-cCCCC--CCCCeEEECCC---------CcCCccCHhHhhCCCCCcEEECCCCccCccCH
Confidence            6899999998542      2 33323  37899999999         667777 55799999999999999999877 6


Q ss_pred             hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465          163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL  242 (432)
Q Consensus       163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  242 (432)
                      ..+..+++|++|++++|. +..+|..+.  ++|++|++++|......+..+..+++|++|++.++.....   ...+..+
T Consensus        96 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~  169 (332)
T 2ft3_A           96 KAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---GFEPGAF  169 (332)
T ss_dssp             GGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---GSCTTSS
T ss_pred             hHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---CCCcccc
Confidence            689999999999999998 778887665  7999999999965544445688999999999998876521   2234555


Q ss_pred             ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeee
Q 037465          243 KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY  322 (432)
Q Consensus       243 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  322 (432)
                      ..+ +|+.+++++..- ...    +..+  .++|++|++++|.+              ....+..+..+++|++|++++|
T Consensus       170 ~~l-~L~~L~l~~n~l-~~l----~~~~--~~~L~~L~l~~n~i--------------~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          170 DGL-KLNYLRISEAKL-TGI----PKDL--PETLNELHLDHNKI--------------QAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             CSC-CCSCCBCCSSBC-SSC----CSSS--CSSCSCCBCCSSCC--------------CCCCTTSSTTCTTCSCCBCCSS
T ss_pred             cCC-ccCEEECcCCCC-Ccc----Cccc--cCCCCEEECCCCcC--------------CccCHHHhcCCCCCCEEECCCC
Confidence            566 788988887432 221    1112  27899999999983              2333456788999999999999


Q ss_pred             CCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEE
Q 037465          323 GGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELS  399 (432)
Q Consensus       323 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  399 (432)
                      ....++ .++..+++|+.|++++|... .+| .++.++ |+.|++++|. ++.++...++...     +...+++|+.|+
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-----~~~~~~~l~~L~  300 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-----FGVKRAYYNGIS  300 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----CCSSSCCBSEEE
T ss_pred             cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHccccc-----cccccccccceE
Confidence            887765 47889999999999999655 565 578899 9999999997 8888876554321     112368899999


Q ss_pred             EeCCccccccccCCCCCCcccccCCCCccCCC
Q 037465          400 IEGCPLLENRYREGKGEDWHKISHIPHIQMSP  431 (432)
Q Consensus       400 i~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~  431 (432)
                      +.++|........   ..+..+.++..+.+++
T Consensus       301 l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          301 LFNNPVPYWEVQP---ATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             CCSSSSCGGGSCG---GGGTTBCCSTTEEC--
T ss_pred             eecCcccccccCc---ccccccchhhhhhccc
Confidence            9999854222211   2344455666665554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1.6e-23  Score=196.78  Aligned_cols=218  Identities=25%  Similarity=0.343  Sum_probs=117.1

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+++.|++.++.+..+|..+.++++|++|++++|.+     . . ++..+..+++|++|++++         +.+..+|.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l-----~-~-lp~~~~~l~~L~~L~Ls~---------n~l~~lp~  144 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-----M-E-LPDTMQQFAGLETLTLAR---------NPLRALPA  144 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC-----C-C-CCSCGGGGTTCSEEEEES---------CCCCCCCG
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc-----c-c-hhHHHhccCCCCEEECCC---------CccccCcH
Confidence            455556666666555555555566666666666532     2 2 333355566666666665         44445555


Q ss_pred             cccCCccccEEEeCCcc-ccccchhhhc---------cCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC
Q 037465          141 NVGKLIHLKYLNLSGLC-IKRLPETLCE---------LYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP  210 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~-l~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p  210 (432)
                      .++++++|++|++++|. +..+|..+..         +++|++|++++|. +..+|..++.+++|++|++++|.. ..+|
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l-~~l~  222 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL-SALG  222 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC-CCCC
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC-CcCc
Confidence            55566666666666554 4455544432         5555555555554 335555555555555555555532 2344


Q ss_pred             ccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCc
Q 037465          211 IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE  290 (432)
Q Consensus       211 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  290 (432)
                      ..++.+++|++|++.+|...                                                            
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~------------------------------------------------------------  242 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTAL------------------------------------------------------------  242 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTC------------------------------------------------------------
T ss_pred             hhhccCCCCCEEECcCCcch------------------------------------------------------------
Confidence            44444444444444433322                                                            


Q ss_pred             hHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCC-CCCChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEecccc
Q 037465          291 DEERRRKKEKDEQLLKALQPPVNVEELWIVYYGG-NIFPKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNL  367 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c  367 (432)
                                 ...+..+..+++|++|++++|.. ..+|.++..+++|+.|++++|...+.+| .++.++ |+.+++...
T Consensus       243 -----------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          243 -----------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             -----------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             -----------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence                       22233344444444444444332 2346666677777777777777766666 366677 777776644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=3.7e-22  Score=195.89  Aligned_cols=267  Identities=18%  Similarity=0.109  Sum_probs=199.4

Q ss_pred             CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCc
Q 037465           77 PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGL  156 (432)
Q Consensus        77 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~  156 (432)
                      +..+.++++|++|++++|.++     +  ++ .+..+++|++|++++         +.++.+|  ++.+++|++|++++|
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~-----~--~~-~l~~l~~L~~L~Ls~---------n~l~~~~--~~~l~~L~~L~Ls~N   95 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSIT-----D--MT-GIEKLTGLTKLICTS---------NNITTLD--LSQNTNLTYLACDSN   95 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCC-----C--CT-TGGGCTTCSEEECCS---------SCCSCCC--CTTCTTCSEEECCSS
T ss_pred             ccChhHcCCCCEEEccCCCcc-----c--Ch-hhcccCCCCEEEccC---------CcCCeEc--cccCCCCCEEECcCC
Confidence            456788999999999999553     3  34 388999999999999         6677775  889999999999999


Q ss_pred             cccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCC
Q 037465          157 CIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSST  236 (432)
Q Consensus       157 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~  236 (432)
                      .+..+|  ++.+++|++|++++|. +..+|  ++.+++|++|++++|.... ++  ++.+++|++|++..+....     
T Consensus        96 ~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~-----  162 (457)
T 3bz5_A           96 KLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKIT-----  162 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCC-----
T ss_pred             CCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccc-----
Confidence            999885  8899999999999998 66665  8899999999999996544 43  7899999999998885442     


Q ss_pred             cCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcE
Q 037465          237 CRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEE  316 (432)
Q Consensus       237 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~  316 (432)
                       .. .+..+++|+.|+++++.- ...      .+..+++|+.|++++|.+.+               .  .+..+++|+.
T Consensus       163 -~~-~~~~l~~L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~~---------------~--~l~~l~~L~~  216 (457)
T 3bz5_A          163 -KL-DVTPQTQLTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNITK---------------L--DLNQNIQLTF  216 (457)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCSC---------------C--CCTTCTTCSE
T ss_pred             -cc-ccccCCcCCEEECCCCcc-cee------ccccCCCCCEEECcCCcCCe---------------e--ccccCCCCCE
Confidence             11 477889999999988532 221      27788999999999998321               1  3678899999


Q ss_pred             EEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCc
Q 037465          317 LWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSS  395 (432)
Q Consensus       317 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L  395 (432)
                      |++++|....+|  +..+++|+.|++++|...+ +| .+.++ |+.|+++++. ++.+....-.  ....+ |.+.+++|
T Consensus       217 L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~--~~~~~-~~~~l~~L  288 (457)
T 3bz5_A          217 LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTD-LLEIDLTHNT--QLIYF-QAEGCRKI  288 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCC-CSCCCCTTCT--TCCEE-ECTTCTTC
T ss_pred             EECcCCcccccC--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCC-CCEEECCCCc--cCCcc-cccccccC
Confidence            999999998877  7799999999999996544 44 45677 7766665543 4444221100  00000 22345666


Q ss_pred             ceEEEeCCcccccc
Q 037465          396 SELSIEGCPLLENR  409 (432)
Q Consensus       396 ~~L~i~~cp~L~~~  409 (432)
                      +.|++++|+.++.+
T Consensus       289 ~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          289 KELDVTHNTQLYLL  302 (457)
T ss_dssp             CCCCCTTCTTCCEE
T ss_pred             CEEECCCCccccee
Confidence            66666666554444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2.2e-22  Score=204.56  Aligned_cols=261  Identities=19%  Similarity=0.105  Sum_probs=204.4

Q ss_pred             CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|++.++.+..++ ..|..+++|++|++++|.+     .+. ++..|..+++|++|++++         +.++.+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l  138 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-----RYL-PPHVFQNVPLLTVLVLER---------NDLSSL  138 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-----CCC-CTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-----CCC-CHHHHcCCCCCCEEEeeC---------CCCCCC
Confidence            468999999999988855 4889999999999999954     343 566689999999999999         678888


Q ss_pred             Ccc-ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccc---------
Q 037465          139 PEN-VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLK---------  207 (432)
Q Consensus       139 p~~-~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---------  207 (432)
                      |.. ++.+++|++|++++|.+..+++ .++.+++|++|++++|. +..++  ++.+++|+.|++++|....         
T Consensus       139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~  215 (597)
T 3oja_B          139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEE  215 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred             CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhhe
Confidence            766 5899999999999999887765 68999999999999998 55444  4556677776666663321         


Q ss_pred             ---------cCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCce
Q 037465          208 ---------YMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLC  278 (432)
Q Consensus       208 ---------~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~  278 (432)
                               .++..  ..++|+.|++.++...       .+..+..+++|+.|+++++.    .....+..+..+++|+.
T Consensus       216 L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~-------~~~~l~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          216 LDASHNSINVVRGP--VNVELTILKLQHNNLT-------DTAWLLNYPGLVEVDLSYNE----LEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             EECCSSCCCEEECS--CCSCCCEEECCSSCCC-------CCGGGGGCTTCSEEECCSSC----CCEEESGGGTTCSSCCE
T ss_pred             eeccCCcccccccc--cCCCCCEEECCCCCCC-------CChhhccCCCCCEEECCCCc----cCCCCHHHhcCccCCCE
Confidence                     11111  1246777777666554       24668889999999999843    33344567888999999


Q ss_pred             EEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc
Q 037465          279 LHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP  358 (432)
Q Consensus       279 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~  358 (432)
                      |++++|.+               ..++..+..+++|+.|++++|....+|.++..+++|+.|++++|.. ..++ ++.++
T Consensus       283 L~Ls~N~l---------------~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~-~~~~~  345 (597)
T 3oja_B          283 LYISNNRL---------------VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLK-LSTHH  345 (597)
T ss_dssp             EECTTSCC---------------CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCC-CCTTC
T ss_pred             EECCCCCC---------------CCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC-CCcC-hhhcC
Confidence            99999983               2244556778999999999999999999999999999999999965 4444 67899


Q ss_pred             -cceEeccccc
Q 037465          359 -LEKLTLYNLK  368 (432)
Q Consensus       359 -L~~L~l~~c~  368 (432)
                       |+.|++++|+
T Consensus       346 ~L~~L~l~~N~  356 (597)
T 3oja_B          346 TLKNLTLSHND  356 (597)
T ss_dssp             CCSEEECCSSC
T ss_pred             CCCEEEeeCCC
Confidence             9999999987

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=6e-22  Score=204.73  Aligned_cols=307  Identities=17%  Similarity=0.105  Sum_probs=154.7

Q ss_pred             ceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           62 KVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      +++.|+++++.+..+ +..+..+++|++|++++|.+     .+. .+..+..+++|++|++++|.....   -....+|.
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~~~~~~~---~~~~~lp~  319 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQS---ISLASLPK  319 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-----SEE-CTTTTTTCTTCCEEECTTCBCCC---------CCE
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-----Ccc-ChhhhcCCCCccEEeccchhhhcc---cccccccc
Confidence            366666666665553 34556666666666666632     222 344466666666666665310000   00112332


Q ss_pred             ----cccCCccccEEEeCCccccccch-hhhccCCccEEecccccc-cccCChh-hhc--ccccceEEcCCCCccccCCc
Q 037465          141 ----NVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRN-LRELPAG-IGK--LMNMRSLLNDNTRSLKYMPI  211 (432)
Q Consensus       141 ----~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~-~~~lp~~-i~~--l~~L~~L~l~~~~~~~~~p~  211 (432)
                          .+..+++|++|++++|.+..+++ .+..+++|++|++++|.. ...++.. +..  .++|+.|++++|......|.
T Consensus       320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~  399 (680)
T 1ziw_A          320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD  399 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred             cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence                56667777777777777665543 466677777777766541 1122211 111  13455555555544444445


Q ss_pred             cCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCC--------------------c--hhhhhcc
Q 037465          212 GISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSH--------------------L--DEAERLQ  269 (432)
Q Consensus       212 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------------~--~~~~~~~  269 (432)
                      .+..+++|+.|++.++....    ......+..+++|+.++++++.-...                    .  ....+..
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQ----ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEE----ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred             hhhCCCCCCEEeCCCCcCcc----ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence            55556666666665554432    11113344445555555544221000                    0  0112334


Q ss_pred             cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC---------hhhhccCCCcEE
Q 037465          270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP---------KWLTSLTNLRNL  340 (432)
Q Consensus       270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~l~~l~~L~~L  340 (432)
                      +..+++|+.|++++|.+              .......+..+++|+.|++++|....++         ..+..+++|+.|
T Consensus       476 ~~~l~~L~~L~Ls~N~l--------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNI--------------ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTTCTTCCEEECCSSCC--------------CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             cccCCCCCEEECCCCCC--------------CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            45555666666666552              1112233455566666666665544321         124456666666


Q ss_pred             EEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          341 YLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       341 ~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                      ++++|... .+|  .++.++ |+.|++++|. ++.++...+.           .+++|+.|++++| .++.+
T Consensus       542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~-----------~l~~L~~L~L~~N-~l~~~  599 (680)
T 1ziw_A          542 NLESNGFD-EIPVEVFKDLFELKIIDLGLNN-LNTLPASVFN-----------NQVSLKSLNLQKN-LITSV  599 (680)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-----------TCTTCCEEECTTS-CCCBC
T ss_pred             ECCCCCCC-CCCHHHcccccCcceeECCCCC-CCcCCHhHhC-----------CCCCCCEEECCCC-cCCcc
Confidence            66666333 343  255666 6666666655 5555544332           3677788888777 34433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=5.4e-22  Score=188.56  Aligned_cols=264  Identities=18%  Similarity=0.119  Sum_probs=201.8

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~  144 (432)
                      .+.+++.++.+|..+.  ++|++|++++|.+     .. +.+..+..+++|++|++++         +.++.+ |..+.+
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i-----~~-~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~   98 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRI-----TY-ISNSDLQRCVNLQALVLTS---------NGINTIEEDSFSS   98 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCC-----CE-ECTTTTTTCTTCCEEECTT---------SCCCEECTTTTTT
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcC-----cc-cCHHHhccCCCCCEEECCC---------CccCccCHhhcCC
Confidence            6777888888888765  5899999999954     33 2444689999999999999         667777 567899


Q ss_pred             CccccEEEeCCccccccchh-hhccCCccEEecccccccccCCh--hhhcccccceEEcCCCCccccC-CccCCcccccc
Q 037465          145 LIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKYM-PIGISKLTSLR  220 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~  220 (432)
                      +++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.  .+..+++|+.|++++|.....+ +..++.+++|+
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            99999999999999999876 8899999999999998 667776  6788999999999999655555 46788999999


Q ss_pred             cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465          221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK  300 (432)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  300 (432)
                      +|++.++...     ...+..+..+++|+.|++++..- ...   ....+..+++|+.|++++|.+.+....        
T Consensus       178 ~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~--------  240 (353)
T 2z80_A          178 ELEIDASDLQ-----SYEPKSLKSIQNVSHLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFHFS--------  240 (353)
T ss_dssp             EEEEEETTCC-----EECTTTTTTCSEEEEEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred             EEECCCCCcC-----ccCHHHHhccccCCeecCCCCcc-ccc---hhhhhhhcccccEEECCCCcccccccc--------
Confidence            9999988765     33466778889999999987542 222   223345688999999999985332211        


Q ss_pred             hHhhhhcCCCCCCCcEEEEeeeCCCC-----CChhhhccCCCcEEEEeCCCCCCCCCC--CCCcc-cceEeccccc
Q 037465          301 DEQLLKALQPPVNVEELWIVYYGGNI-----FPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYNLK  368 (432)
Q Consensus       301 ~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~l~-L~~L~l~~c~  368 (432)
                         ..........++.+++.++....     +|.++..+++|+.|++++|... .+|.  ++.++ |+.|++++|+
T Consensus       241 ---~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          241 ---ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence               11122345678888888765543     5777889999999999999554 5553  57889 9999999887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=190.55  Aligned_cols=260  Identities=17%  Similarity=0.128  Sum_probs=204.4

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|+++++.+..++. .+.++++|++|++++|.+     ++. .+..+..+++|++|++++         +.++.+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~  115 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-----NTI-EEDSFSSLGSLEHLDLSY---------NYLSNL  115 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCSSC
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc-----Ccc-CHhhcCCCCCCCEEECCC---------CcCCcC
Confidence            4589999999999998766 789999999999999954     332 455689999999999999         778888


Q ss_pred             Ccc-ccCCccccEEEeCCccccccch--hhhccCCccEEecccccccccC-ChhhhcccccceEEcCCCCccccCCccCC
Q 037465          139 PEN-VGKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLREL-PAGIGKLMNMRSLLNDNTRSLKYMPIGIS  214 (432)
Q Consensus       139 p~~-~~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~l~  214 (432)
                      |.. +.++++|++|++++|.+..+|.  .+..+++|++|++++|..+..+ +..+..+++|++|++++|......|..++
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  195 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK  195 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence            766 8899999999999999999987  6889999999999999545555 55788999999999999987777788899


Q ss_pred             cccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHH
Q 037465          215 KLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEER  294 (432)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  294 (432)
                      .+++|++|++.++....     .....+..+++|+.|++++..-.. ............+.++.++++.+.+.+.     
T Consensus       196 ~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~l~~~-----  264 (353)
T 2z80_A          196 SIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVKITDE-----  264 (353)
T ss_dssp             TCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCBCCHH-----
T ss_pred             ccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCcccc-ccccccccccccchhhccccccccccCc-----
Confidence            99999999998877542     122234457889999998743221 1111112234567788999988873221     


Q ss_pred             hhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhh-hccCCCcEEEEeCCCCCCC
Q 037465          295 RRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWL-TSLTNLRNLYLSSCFNCEH  350 (432)
Q Consensus       295 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~  350 (432)
                           ....++..+..+++|+.|++++|....+|..+ ..+++|+.|++++|+....
T Consensus       265 -----~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          265 -----SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             -----HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             -----chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                 23456677888999999999999998888875 6899999999999975443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=5.5e-21  Score=195.63  Aligned_cols=132  Identities=21%  Similarity=0.263  Sum_probs=112.8

Q ss_pred             CCceEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      +..++.|+++++.+..++ ..|.++++|++|++++|.+     . .+.+.+|..+++|++|+|++         +.++.+
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-----~-~i~~~~f~~L~~L~~L~Ls~---------N~l~~l  115 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----Q-TIEDGAYQSLSHLSTLILTG---------NPIQSL  115 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----C-EECTTTTTTCTTCCEEECTT---------CCCCEE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-----C-CcChhHhcCCCCCCEEEccC---------CcCCCC
Confidence            568999999999999976 4799999999999999954     2 23556699999999999999         778888


Q ss_pred             Cc-cccCCccccEEEeCCccccccch-hhhccCCccEEecccccccc-cCChhhhcccccceEEcCCCCcc
Q 037465          139 PE-NVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLR-ELPAGIGKLMNMRSLLNDNTRSL  206 (432)
Q Consensus       139 p~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~  206 (432)
                      |. .|.++++|++|++++|.+..+|+ .++.+++|++|++++|.... .+|..++.+++|++|++++|...
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            65 57899999999999999998886 58999999999999998433 46788889999999999998553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=1e-21  Score=182.81  Aligned_cols=240  Identities=19%  Similarity=0.117  Sum_probs=155.9

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc---Ccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI---PEN  141 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l---p~~  141 (432)
                      .+...+.++..+|..+.  ++|++|++++|.+     . .+++..+..+++|++|++++         +.++.+   |..
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-----~-~i~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~   73 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKL-----Q-SLPHGVFDKLTQLTKLSLSS---------NGLSFKGCCSQS   73 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCC-----C-CCCTTTTTTCTTCSEEECCS---------SCCCEEEEEEHH
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCcc-----C-ccCHhHhhccccCCEEECCC---------CccCcccCcccc
Confidence            46667777777777553  6788888888854     2 22444577888888888888         445433   556


Q ss_pred             ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      +..+++|++|++++|.+..+|..+..+++|++|++++|. +..++  ..+..+++|++|++++|......+..+..+++|
T Consensus        74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  152 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  152 (306)
T ss_dssp             HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred             cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence            667888888888888888888778888888888888887 54444  357778888888888886665666667777888


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKE  299 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  299 (432)
                      ++|++.++....    ...+..+..+++|+.|++++                            |.+             
T Consensus       153 ~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~Ls~----------------------------n~l-------------  187 (306)
T 2z66_A          153 EVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQ----------------------------CQL-------------  187 (306)
T ss_dssp             CEEECTTCEEGG----GEECSCCTTCTTCCEEECTT----------------------------SCC-------------
T ss_pred             CEEECCCCcccc----ccchhHHhhCcCCCEEECCC----------------------------CCc-------------
Confidence            888777665442    12333444555555555554                            331             


Q ss_pred             hhHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCCCCCC-CCCCcc--cceEeccccc
Q 037465          300 KDEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP--LEKLTLYNLK  368 (432)
Q Consensus       300 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~--L~~L~l~~c~  368 (432)
                       ....+..+..+++|++|++++|....++ ..+..+++|+.|++++|...+..+ .+..+|  |+.|++++|+
T Consensus       188 -~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          188 -EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             -CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             -CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence             1111223344455555555555444433 245567777777777776555444 355663  7777777766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=4.2e-21  Score=178.68  Aligned_cols=225  Identities=17%  Similarity=0.076  Sum_probs=149.3

Q ss_pred             CcceEEEeCCCCCCCCCCCCcccccCcc-ccCCccccEEEeCCcccccc---chhhhccCCccEEecccccccccCChhh
Q 037465          114 ACLRALVISQSSSFSHPGPNLITEIPEN-VGKLIHLKYLNLSGLCIKRL---PETLCELYNLQKLDIRWCRNLRELPAGI  189 (432)
Q Consensus       114 ~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~i  189 (432)
                      ++|++|++++         +.++.+|.. +.++++|++|++++|.+..+   |..+..+++|++|++++|. +..+|..+
T Consensus        28 ~~l~~L~L~~---------n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~   97 (306)
T 2z66_A           28 SSATRLELES---------NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF   97 (306)
T ss_dssp             TTCCEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred             CCCCEEECCC---------CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence            5677777777         556666544 46677777777777766543   4556666777777777766 55566666


Q ss_pred             hcccccceEEcCCCCccccCC-ccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhc
Q 037465          190 GKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL  268 (432)
Q Consensus       190 ~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  268 (432)
                      ..+++|++|++++|......+ ..+..+++|++|++.++...                                 ...+.
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------------~~~~~  144 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------------------------------VAFNG  144 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE---------------------------------ECSTT
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC---------------------------------ccchh
Confidence            666777777776663322221 23445555555555443322                                 11223


Q ss_pred             ccccccCCceEEEeeccccCCchHHHhhhhhhhH-hhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCC
Q 037465          269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDE-QLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCF  346 (432)
Q Consensus       269 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~  346 (432)
                      .+..+++|++|++++|.+              .. ..+..+..+++|++|++++|....+ |.++..+++|+.|++++|.
T Consensus       145 ~~~~l~~L~~L~l~~n~l--------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSF--------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TTTTCTTCCEEECTTCEE--------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             hcccCcCCCEEECCCCcc--------------ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            355667788888877762              22 3556788899999999999888765 6778899999999999996


Q ss_pred             CCCCCC-CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465          347 NCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLL  406 (432)
Q Consensus       347 ~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L  406 (432)
                      .....+ .++.++ |+.|++++|. ++..+...+..          .+++|+.|++++++--
T Consensus       211 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----------~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          211 FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH----------FPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCC----------CCTTCCEEECTTCCEE
T ss_pred             cCccChhhccCcccCCEeECCCCC-CcccCHHHHHh----------hhccCCEEEccCCCee
Confidence            544333 467899 9999999997 66554433321          2359999999998743

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=6.6e-21  Score=187.23  Aligned_cols=241  Identities=19%  Similarity=0.173  Sum_probs=181.0

Q ss_pred             eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccc
Q 037465           63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PEN  141 (432)
Q Consensus        63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~  141 (432)
                      .+.+...+.++..+|..+.  +++++|++++|.+     ... .+..|..+++|++|++++         +.+..+ |..
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~i~~~~~~~  118 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNI-----QMI-QADTFRHLHHLEVLQLGR---------NSIRQIEVGA  118 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCEECTTT
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcC-----ceE-CHHHcCCCCCCCEEECCC---------CccCCcChhh
Confidence            4567777888888887664  6899999999954     332 455688999999999999         667776 467


Q ss_pred             ccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCc-cCCcccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPI-GISKLTS  218 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~  218 (432)
                      +.++++|++|++++|.+..+|.. +..+++|++|++++|. +..+|. .+..+++|+.|++++|.....++. .+..+++
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  197 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN  197 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence            88899999999999999988764 7889999999999998 555554 577899999999999877777774 4788999


Q ss_pred             cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465          219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK  298 (432)
Q Consensus       219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (432)
                      |++|++.++....       .+.+..+++|+.|++++..    +....+..+..+++|+.|++++|.+            
T Consensus       198 L~~L~L~~n~l~~-------~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l------------  254 (452)
T 3zyi_A          198 LKYLNLGMCNIKD-------MPNLTPLVGLEELEMSGNH----FPEIRPGSFHGLSSLKKLWVMNSQV------------  254 (452)
T ss_dssp             CCEEECTTSCCSS-------CCCCTTCTTCCEEECTTSC----CSEECGGGGTTCTTCCEEECTTSCC------------
T ss_pred             CCEEECCCCcccc-------cccccccccccEEECcCCc----CcccCcccccCccCCCEEEeCCCcC------------
Confidence            9999998876552       3457777888888888732    2233345677778888888888772            


Q ss_pred             hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCCC
Q 037465          299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSCF  346 (432)
Q Consensus       299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  346 (432)
                        .......+..+++|+.|++++|....+|.. +..+++|+.|++++|+
T Consensus       255 --~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          255 --SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             --CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             --ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence              223344566677778888777776665543 4467777888777775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=7.1e-21  Score=186.35  Aligned_cols=241  Identities=18%  Similarity=0.192  Sum_probs=176.7

Q ss_pred             eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-cc
Q 037465           63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-EN  141 (432)
Q Consensus        63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~  141 (432)
                      .+.+...+.++..+|..+.  ++++.|++++|.+     ... .+..|..+++|++|++++         +.+..++ ..
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-----~~~-~~~~~~~l~~L~~L~Ls~---------n~i~~i~~~~  107 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQI-----QII-KVNSFKHLRHLEILQLSR---------NHIRTIEIGA  107 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCC-----CEE-CTTTTSSCSSCCEEECCS---------SCCCEECGGG
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcC-----Cee-CHHHhhCCCCCCEEECCC---------CcCCccChhh
Confidence            3467777788888887764  6889999999954     232 445588999999999999         6677764 67


Q ss_pred             ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCc-cCCcccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPI-GISKLTS  218 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~  218 (432)
                      +.++++|++|++++|.+..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++++|.....++. .+..+++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            8889999999999999988876 58889999999999998 545544 577899999999998777777664 5788899


Q ss_pred             cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465          219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK  298 (432)
Q Consensus       219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (432)
                      |++|++.++...       .++.+..+++|+.|++++..    .....+..+..+++|+.|++++|.+            
T Consensus       187 L~~L~L~~n~l~-------~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l------------  243 (440)
T 3zyj_A          187 LRYLNLAMCNLR-------EIPNLTPLIKLDELDLSGNH----LSAIRPGSFQGLMHLQKLWMIQSQI------------  243 (440)
T ss_dssp             CCEEECTTSCCS-------SCCCCTTCSSCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCC------------
T ss_pred             cCeecCCCCcCc-------cccccCCCcccCEEECCCCc----cCccChhhhccCccCCEEECCCCce------------
Confidence            999998877655       23356777788888887742    2223345567777888888877762            


Q ss_pred             hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCCC
Q 037465          299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSCF  346 (432)
Q Consensus       299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  346 (432)
                        .......+..+++|+.|++++|....+|.. +..+++|+.|++++|+
T Consensus       244 --~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          244 --QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             --CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             --eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence              222334566677777777777766665443 3467777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=2.3e-21  Score=178.57  Aligned_cols=222  Identities=17%  Similarity=0.130  Sum_probs=150.4

Q ss_pred             EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465           64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV  142 (432)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~  142 (432)
                      +.++..+.++..+|..+  .++|++|++++|.+     ... .+..+..+++|++|++++         +.++.+ |..+
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i-----~~~-~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~   76 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRI-----SHV-PAASFRACRNLTILWLHS---------NVLARIDAAAF   76 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCEECTTTT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcC-----Ccc-CHHHcccCCCCCEEECCC---------CccceeCHhhc
Confidence            45677777777777654  46888999988854     232 445578888999999988         566666 6678


Q ss_pred             cCCccccEEEeCCcc-cccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          143 GKLIHLKYLNLSGLC-IKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                      ..+++|++|++++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..++.+++|+
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            888899999999887 7777 55788888899999988884444466677888888888888855443334467777777


Q ss_pred             cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465          221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK  300 (432)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  300 (432)
                      +|++.++....     .....+                            ..+++|+.|++++|.+              
T Consensus       157 ~L~l~~n~l~~-----~~~~~~----------------------------~~l~~L~~L~l~~n~l--------------  189 (285)
T 1ozn_A          157 HLFLHGNRISS-----VPERAF----------------------------RGLHSLDRLLLHQNRV--------------  189 (285)
T ss_dssp             EEECCSSCCCE-----ECTTTT----------------------------TTCTTCCEEECCSSCC--------------
T ss_pred             EEECCCCcccc-----cCHHHh----------------------------cCccccCEEECCCCcc--------------
Confidence            77776654431     111123                            3344555555555541              


Q ss_pred             hHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCCC
Q 037465          301 DEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNCE  349 (432)
Q Consensus       301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  349 (432)
                      ....+..+..+++|+.|++++|....++ .++..+++|+.|++++|....
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            1222344555666666766666666555 346678888888888886544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=9.7e-20  Score=184.20  Aligned_cols=258  Identities=23%  Similarity=0.214  Sum_probs=199.0

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      ..++.+++.++.+..+|..+.  ++|++|++++|.++.       ++.   .+++|++|++++         +.++.+|.
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-------lp~---~l~~L~~L~Ls~---------N~l~~lp~   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-------LPA---LPPELRTLEVSG---------NQLTSLPV   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-------CCC---CCTTCCEEEECS---------CCCSCCCC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-------CCC---cCCCCCEEEcCC---------CcCCcCCC
Confidence            358889999999999888775  799999999996532       333   578999999999         67888886


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                         .+++|++|++++|.+..+|.   .+++|++|++++|. +..+|..   +++|++|++++|. +..+|.   .+++|+
T Consensus        99 ---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~  164 (622)
T 3g06_A           99 ---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELC  164 (622)
T ss_dssp             ---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred             ---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCC
Confidence               68999999999999999986   67899999999998 7778763   4899999999994 445664   346788


Q ss_pred             cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465          221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK  300 (432)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  300 (432)
                      .|++.++....      .+   ..+++|+.|+++++.- ...+       ...++|+.|++++|.+.             
T Consensus       165 ~L~L~~N~l~~------l~---~~~~~L~~L~Ls~N~l-~~l~-------~~~~~L~~L~L~~N~l~-------------  214 (622)
T 3g06_A          165 KLWAYNNQLTS------LP---MLPSGLQELSVSDNQL-ASLP-------TLPSELYKLWAYNNRLT-------------  214 (622)
T ss_dssp             EEECCSSCCSC------CC---CCCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCS-------------
T ss_pred             EEECCCCCCCC------Cc---ccCCCCcEEECCCCCC-CCCC-------CccchhhEEECcCCccc-------------
Confidence            88888776653      22   4467899999887432 2211       13478999999998832             


Q ss_pred             hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccC
Q 037465          301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLG  379 (432)
Q Consensus       301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~  379 (432)
                        .++   ..+++|++|++++|....+|   ..+++|+.|++++|. ++.+|.  .++ |+.|++++|. ++.+|..+. 
T Consensus       215 --~l~---~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L~~lp~~l~-  281 (622)
T 3g06_A          215 --SLP---ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-LTRLPESLI-  281 (622)
T ss_dssp             --SCC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CCSCCGGGG-
T ss_pred             --ccC---CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-CCcCCHHHh-
Confidence              111   23578999999999888877   467899999999994 556776  567 9999999996 888876543 


Q ss_pred             CCCCCCCCCCCCCCCcceEEEeCCcccc
Q 037465          380 IEESSEDDPSSSSSSSSELSIEGCPLLE  407 (432)
Q Consensus       380 ~~~~~~~~~~~~~~~L~~L~i~~cp~L~  407 (432)
                                 .+++|+.|++++|+--.
T Consensus       282 -----------~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          282 -----------HLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -----------GSCTTCEEECCSCCCCH
T ss_pred             -----------hccccCEEEecCCCCCC
Confidence                       47899999999987443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=2.8e-20  Score=182.76  Aligned_cols=221  Identities=18%  Similarity=0.147  Sum_probs=133.4

Q ss_pred             CcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCChh-hh
Q 037465          114 ACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAG-IG  190 (432)
Q Consensus       114 ~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-i~  190 (432)
                      +++++|++++         +.++.+ |..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..+|.. +.
T Consensus        75 ~~l~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  144 (452)
T 3zyi_A           75 SNTRYLNLME---------NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFE  144 (452)
T ss_dssp             TTCSEEECCS---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSS
T ss_pred             CCccEEECcC---------CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhc
Confidence            5788888888         566666 567788888888888888877665 467788888888888887 5555543 66


Q ss_pred             cccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhccc
Q 037465          191 KLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL  270 (432)
Q Consensus       191 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l  270 (432)
                      .+++|++|++++|......+..+..+++|+.|++.++....    ......+..+++|+.|+++++.- ...     ..+
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L~~n~l-~~~-----~~~  214 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNLGMCNI-KDM-----PNL  214 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCTTCCEEECTTSCC-SSC-----CCC
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc----ccChhhccCCCCCCEEECCCCcc-ccc-----ccc
Confidence            78888888888885543333467778888888877654432    22223455666677766665322 111     234


Q ss_pred             ccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCC
Q 037465          271 YNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCE  349 (432)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  349 (432)
                      ..+++|+.|++++|.+              ....+..+..+++|+.|++.+|....+ +..+..+++|+.|++++|....
T Consensus       215 ~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHF--------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             TTCTTCCEEECTTSCC--------------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cccccccEEECcCCcC--------------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            5556666666666652              222233445555555555555544432 3344455555555555553322


Q ss_pred             CCC-CCCCcc-cceEeccccc
Q 037465          350 HLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       350 ~l~-~~~~l~-L~~L~l~~c~  368 (432)
                      ..+ .++.++ |+.|++++|+
T Consensus       281 ~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCTTSSTTCTTCCEEECCSSC
T ss_pred             cChHHhccccCCCEEEccCCC
Confidence            221 234455 5555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=1.4e-22  Score=189.65  Aligned_cols=262  Identities=11%  Similarity=0.014  Sum_probs=165.5

Q ss_pred             eEEEEeecCCCCCCC-ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           63 VRHLGLNFEGGAPLP-MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        63 i~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      .+...+..+.+...+ ..+..+++|++|++++|.+     ... .+..+..+++|++|++++         +.+..+++ 
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~-   75 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-----SQI-SAADLAPFTKLELLNLSS---------NVLYETLD-   75 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC-----CCC-CHHHHTTCTTCCEEECTT---------SCCEEEEE-
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc-----CcC-CHHHhhCCCcCCEEECCC---------CcCCcchh-
Confidence            333444444433322 2345567899999999843     333 556688899999999988         56666554 


Q ss_pred             ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT  221 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  221 (432)
                      +..+++|++|++++|.+..++.    .++|++|++++|. +..++.  ..+++|+.|++++|......+..++.+++|++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  148 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred             hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence            8888999999999998877763    3788999999887 444443  34678899999988665555567778888888


Q ss_pred             ccceEecccccCCCCcCcccc-ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhh
Q 037465          222 LGKFVVGGGVDGSSTCRLESL-KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEK  300 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  300 (432)
                      |++.++....     ..+..+ ..+++|+.|+++++.- ...     .....+++|+.|++++|.+              
T Consensus       149 L~Ls~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l-~~~-----~~~~~l~~L~~L~Ls~N~l--------------  203 (317)
T 3o53_A          149 LDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFI-YDV-----KGQVVFAKLKTLDLSSNKL--------------  203 (317)
T ss_dssp             EECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSCC-CEE-----ECCCCCTTCCEEECCSSCC--------------
T ss_pred             EECCCCCCCc-----ccHHHHhhccCcCCEEECCCCcC-ccc-----ccccccccCCEEECCCCcC--------------
Confidence            8888776552     223333 3567777777776432 111     1223466677777776662              


Q ss_pred             hHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCC-CCCC-CCCCcc-cceEecccccccccc
Q 037465          301 DEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNC-EHLP-PLGKLP-LEKLTLYNLKSVKRV  373 (432)
Q Consensus       301 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~l~-~~~~l~-L~~L~l~~c~~l~~~  373 (432)
                       ..++..+..+++|+.|++++|....+|..+..+++|+.|++++|... ..++ .++.++ |+.|++.++..++..
T Consensus       204 -~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          204 -AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             -CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             -CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence             12222344556666666666666666666666666666666666544 2222 244556 666666655555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=3.7e-20  Score=181.21  Aligned_cols=240  Identities=19%  Similarity=0.179  Sum_probs=150.7

Q ss_pred             ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccc-h
Q 037465           86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLP-E  163 (432)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~  163 (432)
                      .+.++..+..++      . +|..+  .+++++|++++         +.++.+ +..+.++++|++|++++|.+..++ .
T Consensus        45 ~~~v~c~~~~l~------~-iP~~~--~~~l~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~  106 (440)
T 3zyj_A           45 FSKVICVRKNLR------E-VPDGI--STNTRLLNLHE---------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG  106 (440)
T ss_dssp             SCEEECCSCCCS------S-CCSCC--CTTCSEEECCS---------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGG
T ss_pred             CCEEEeCCCCcC------c-CCCCC--CCCCcEEEccC---------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChh
Confidence            456666666432      2 33222  26788888888         567666 467788888888888888888766 4


Q ss_pred             hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465          164 TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL  242 (432)
Q Consensus       164 ~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  242 (432)
                      .+..+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|++.++....    ......+
T Consensus       107 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~  181 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS----YISEGAF  181 (440)
T ss_dssp             GGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTT
T ss_pred             hccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc----eeCcchh
Confidence            67888888888888887 555554 47788888888888886544444567788888888887654432    2233346


Q ss_pred             ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeee
Q 037465          243 KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYY  322 (432)
Q Consensus       243 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  322 (432)
                      ..+++|+.|+++++.- ...     ..+..+++|+.|++++|.+              ....+..+..+++|++|++.+|
T Consensus       182 ~~l~~L~~L~L~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNL-REI-----PNLTPLIKLDELDLSGNHL--------------SAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             TTCSSCCEEECTTSCC-SSC-----CCCTTCSSCCEEECTTSCC--------------CEECTTTTTTCTTCCEEECTTC
T ss_pred             hcccccCeecCCCCcC-ccc-----cccCCCcccCEEECCCCcc--------------CccChhhhccCccCCEEECCCC
Confidence            6677777777776422 211     2355666777777776662              2222345555666666666665


Q ss_pred             CCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465          323 GGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       323 ~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~  368 (432)
                      ....+ +..+..+++|+.|++++|......+ .+..++ |+.|++++|+
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            55443 3344456666666666664333222 245556 6666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=2.5e-20  Score=182.67  Aligned_cols=143  Identities=14%  Similarity=0.036  Sum_probs=71.4

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcc-------------eEEEeCCCCC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACL-------------RALVISQSSS  126 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~  126 (432)
                      .+.++.+.++++.+..+|..+.++++|++|++++|.     +.+. .|..++.+++|             ++|++++   
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~---   80 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERN-APPGNGEQREMAVSRLRDCLDRQAHELELNN---   80 (454)
T ss_dssp             ------------------------CCHHHHHHHHHH-----HHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTT---
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCc-----cccc-CCcccccchhcchhhhhhhhccCCCEEEecC---
Confidence            567888999999998899999999999999999984     4444 44446666654             7888887   


Q ss_pred             CCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc
Q 037465          127 FSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL  206 (432)
Q Consensus       127 ~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~  206 (432)
                            +.++.+|..   .++|++|++++|.+..+|..   +++|++|++++|. +..+|..   .++|++|++++|...
T Consensus        81 ------~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           81 ------LGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             ------SCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCS
T ss_pred             ------CccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCC
Confidence                  456666542   35677777777776666643   2556666666655 3333321   145666666666333


Q ss_pred             ccCCccCCcccccccccceEecc
Q 037465          207 KYMPIGISKLTSLRTLGKFVVGG  229 (432)
Q Consensus       207 ~~~p~~l~~l~~L~~L~l~~~~~  229 (432)
                       .+| .++.+++|++|++.++..
T Consensus       145 -~lp-~~~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A          145 -KLP-ELQNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             -SCC-CCTTCTTCCEEECCSSCC
T ss_pred             -CCc-ccCCCCCCCEEECCCCcC
Confidence             355 355666666666655543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.4e-19  Score=185.21  Aligned_cols=146  Identities=23%  Similarity=0.142  Sum_probs=119.0

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~  144 (432)
                      .+-.+.++..+|..+.  +.+++|++++|.+     + .+.+..|..+++|++|+|++         +.++.+|+ .|.+
T Consensus        36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i-----~-~l~~~~f~~l~~L~~L~Ls~---------N~i~~i~~~~f~~   98 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPL-----R-HLGSYSFFSFPELQVLDLSR---------CEIQTIEDGAYQS   98 (635)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTSCC-----C-EECTTTTTTCTTCCEEECTT---------CCCCEECTTTTTT
T ss_pred             EECCCCCcCccCCCCC--cCCCEEEeeCCCC-----C-CCCHHHHhCCCCCCEEECCC---------CcCCCcChhHhcC
Confidence            3445556777887653  4799999999965     3 23556699999999999999         67888854 6899


Q ss_pred             CccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc-cCCccCCccccccc
Q 037465          145 LIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK-YMPIGISKLTSLRT  221 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~  221 (432)
                      +++|++|+|++|+++.+|+ .+..+++|++|++++|. +..+|. .++.+++|++|++++|.... ..|..++.+++|++
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  177 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  177 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence            9999999999999999986 57999999999999998 666654 48899999999999996544 45677888999999


Q ss_pred             ccceEecc
Q 037465          222 LGKFVVGG  229 (432)
Q Consensus       222 L~l~~~~~  229 (432)
                      |++.++..
T Consensus       178 L~L~~N~l  185 (635)
T 4g8a_A          178 LDLSSNKI  185 (635)
T ss_dssp             EECCSSCC
T ss_pred             hcccCccc
Confidence            98877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=1e-21  Score=183.29  Aligned_cols=204  Identities=19%  Similarity=0.166  Sum_probs=116.6

Q ss_pred             CCccccEEEeCCcccc-ccchhh--hccCCccEEecccccccccCChhhhcc-----cccceEEcCCCCccccCCccCCc
Q 037465          144 KLIHLKYLNLSGLCIK-RLPETL--CELYNLQKLDIRWCRNLRELPAGIGKL-----MNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                      ++++|++|++++|.+. .+|..+  ..+++|++|++++|. +..+|..++.+     ++|++|++++|......|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            4566666666666654 455444  556666666666665 33335555554     56666666666544444455666


Q ss_pred             ccccccccceEecccccCCCCcCcccc--ccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHH
Q 037465          216 LTSLRTLGKFVVGGGVDGSSTCRLESL--KNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEE  293 (432)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  293 (432)
                      +++|++|+++++.....   ...+..+  ..+++|+.|+++++. +..........+..+++|+.|++++|.+.+..   
T Consensus       172 l~~L~~L~Ls~N~l~~~---~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---  244 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGE---RGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA---  244 (312)
T ss_dssp             CSSCCEEECCSCTTCHH---HHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---
T ss_pred             CCCCCEEECCCCCcCcc---hHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc---
Confidence            66666666665543210   0011122  556666666666642 22222222233455677888888777732211   


Q ss_pred             HhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccc
Q 037465          294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~  368 (432)
                                ....+..+++|++|++++|....+|.++.  ++|+.|++++|.. +.+|.++.++ |+.|++++++
T Consensus       245 ----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          245 ----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTCT
T ss_pred             ----------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CCChhHhhCCCCCEEeccCCC
Confidence                      01234456777777777777777776655  7788888887743 4446677777 8888887776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=3.2e-22  Score=197.05  Aligned_cols=209  Identities=14%  Similarity=0.044  Sum_probs=108.1

Q ss_pred             CceEEEEeecCCCCCC--CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           61 GKVRHLGLNFEGGAPL--PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .+++.|+++++.+...  ...+..+++|++|++++|.++.... . .++..+..+++|++|++++         +.++..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~-~l~~~l~~~~~L~~L~Ls~---------n~l~~~   71 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-K-DISSALRVNPALAELNLRS---------NELGDV   71 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH-H-HHHHHHHTCTTCCEEECTT---------CCCHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH-H-HHHHHHHhCCCcCEEeCCC---------CcCChH
Confidence            4566677766666542  2225566777777777774322100 0 1344466667777777776         334331


Q ss_pred             -Cccc-cCCc----cccEEEeCCcccc-----ccchhhhccCCccEEecccccccccCChhhhc-----ccccceEEcCC
Q 037465          139 -PENV-GKLI----HLKYLNLSGLCIK-----RLPETLCELYNLQKLDIRWCRNLRELPAGIGK-----LMNMRSLLNDN  202 (432)
Q Consensus       139 -p~~~-~~l~----~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~-----l~~L~~L~l~~  202 (432)
                       +..+ ..++    +|++|++++|.+.     .+|..+..+++|++|++++|......+..+..     .++|++|++++
T Consensus        72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  151 (461)
T 1z7x_W           72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY  151 (461)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence             1111 2233    5777777777655     34556666777777777766632222222221     34577777776


Q ss_pred             CCcccc----CCccCCcccccccccceEecccccCCCCcCccccc-----cCccCCceeeCCCCCCCCchhhhhcccccc
Q 037465          203 TRSLKY----MPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLK-----NLQLLRECGIEGLGNVSHLDEAERLQLYNQ  273 (432)
Q Consensus       203 ~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~  273 (432)
                      |.....    ++..+..+++|++|++.++....     ..+..+.     ..++|+.|+++++.-........+..+..+
T Consensus       152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  226 (461)
T 1z7x_W          152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINE-----AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK  226 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-----HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-----HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence            644332    23334455666666666655431     1112221     134566666666533222222234445556


Q ss_pred             cCCceEEEeecc
Q 037465          274 QNLLCLHLEFGR  285 (432)
Q Consensus       274 ~~L~~L~l~~~~  285 (432)
                      ++|++|++++|.
T Consensus       227 ~~L~~L~Ls~n~  238 (461)
T 1z7x_W          227 ASLRELALGSNK  238 (461)
T ss_dssp             TTCCEEECCSSB
T ss_pred             CCccEEeccCCc
Confidence            666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=4e-21  Score=179.76  Aligned_cols=250  Identities=14%  Similarity=0.052  Sum_probs=189.7

Q ss_pred             chhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccchhhhccCCccEEeccccccccc
Q 037465          106 LPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRE  184 (432)
Q Consensus       106 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~  184 (432)
                      +...+..+++|++|++++         +.++.++ ..+..+++|++|++++|.+..+++ +..+++|++|++++|. +..
T Consensus        26 ~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~   94 (317)
T 3o53_A           26 LASLRQSAWNVKELDLSG---------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQE   94 (317)
T ss_dssp             HHHHHTTGGGCSEEECTT---------SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEE
T ss_pred             HHHHhccCCCCCEEECcC---------CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccc
Confidence            445577788999999999         6677774 678999999999999999987765 8999999999999998 655


Q ss_pred             CChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchh
Q 037465          185 LPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDE  264 (432)
Q Consensus       185 lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  264 (432)
                      ++    ..++|++|++++|.... ++.  ..+++|++|++.++...     ......+..+++|+.|++++..-.    .
T Consensus        95 l~----~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~----~  158 (317)
T 3o53_A           95 LL----VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNEID----T  158 (317)
T ss_dssp             EE----ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCC-----SGGGBCTGGGSSEEEEECTTSCCC----E
T ss_pred             cc----CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCC-----CccchhhhccCCCCEEECCCCCCC----c
Confidence            54    34899999999996544 332  24688999999988766     333456778899999999985322    2


Q ss_pred             hhhccc-ccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEe
Q 037465          265 AERLQL-YNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLS  343 (432)
Q Consensus       265 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~  343 (432)
                      ..+..+ ..+++|++|++++|.+.               .. .....+++|++|++++|....+|..+..+++|+.|+++
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~---------------~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIY---------------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR  222 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCC---------------EE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred             ccHHHHhhccCcCCEEECCCCcCc---------------cc-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence            222333 46799999999999832               11 23345899999999999998888888899999999999


Q ss_pred             CCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          344 SCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       344 ~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                      +|......+.++.++ |+.|++++|+-..........           .+++|+.|++.+|+.++..
T Consensus       223 ~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-----------~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-----------KNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             TSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-----------TCHHHHHHHHHHHHHHHSS
T ss_pred             CCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh-----------ccccceEEECCCchhccCC
Confidence            996554333578889 999999999843122222222           3678888888877666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=2.1e-22  Score=198.38  Aligned_cols=235  Identities=19%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             ccccEEEeCCccccc-----cchhhhccCCccEEecccccccccCChhhh-----cccccceEEcCCCCcccc----CCc
Q 037465          146 IHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCRNLRELPAGIG-----KLMNMRSLLNDNTRSLKY----MPI  211 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~-----~l~~L~~L~l~~~~~~~~----~p~  211 (432)
                      ++|++|++++|.+..     ++..+..+++|++|++++|......+..+.     ..++|+.|++++|.....    ++.
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence            345555555555442     333445556666666666552222222222     134666666666643331    344


Q ss_pred             cCCcccccccccceEecccccCCCCcC-ccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCc
Q 037465          212 GISKLTSLRTLGKFVVGGGVDGSSTCR-LESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGE  290 (432)
Q Consensus       212 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  290 (432)
                      .+..+++|++|++.++....... ... ......+++|+.|+++++.-........+..+..+++|++|++++|.+.+. 
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-  299 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGM-AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-  299 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-
T ss_pred             HHHhCCCccEEeccCCcCChHHH-HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-
Confidence            45566677777776665432000 000 111124667777777775322111122445566678888888887773111 


Q ss_pred             hHHHhhhhhhhHhhhhcCC-CCCCCcEEEEeeeCCCC-----CChhhhccCCCcEEEEeCCCCCCC-CCC----CC-Ccc
Q 037465          291 DEERRRKKEKDEQLLKALQ-PPVNVEELWIVYYGGNI-----FPKWLTSLTNLRNLYLSSCFNCEH-LPP----LG-KLP  358 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~-l~~----~~-~l~  358 (432)
                               ....+...+. ..++|++|++++|....     ++.++..+++|+.|++++|..... +..    +. ..+
T Consensus       300 ---------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  370 (461)
T 1z7x_W          300 ---------GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS  370 (461)
T ss_dssp             ---------HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             ---------HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence                     1122333322 33688888888877654     355566778888888888854332 111    11 257


Q ss_pred             -cceEecccccccc-----ccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465          359 -LEKLTLYNLKSVK-----RVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       359 -L~~L~l~~c~~l~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                       |++|++++|. ++     .++..+.            .+++|++|++++|+
T Consensus       371 ~L~~L~L~~n~-i~~~~~~~l~~~l~------------~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          371 VLRVLWLADCD-VSDSSCSSLAATLL------------ANHSLRELDLSNNC  409 (461)
T ss_dssp             CCCEEECTTSC-CCHHHHHHHHHHHH------------HCCCCCEEECCSSS
T ss_pred             ceEEEECCCCC-CChhhHHHHHHHHH------------hCCCccEEECCCCC
Confidence             8888888886 55     3333221            36889999998884

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=3e-19  Score=174.97  Aligned_cols=291  Identities=17%  Similarity=0.140  Sum_probs=158.2

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+++.++++++.+..++..   .++|++|++++|.+     .+  +++ +..+++|++|++++         +.++.+|.
T Consensus       111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-----~~--lp~-~~~l~~L~~L~l~~---------N~l~~lp~  170 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-----EK--LPE-LQNSSFLKIIDVDN---------NSLKKLPD  170 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-----SS--CCC-CTTCTTCCEEECCS---------SCCSCCCC
T ss_pred             CCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-----CC--Ccc-cCCCCCCCEEECCC---------CcCcccCC
Confidence            4556666666655544322   26788999988854     32  343 78888899999888         55666665


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                      .+   .+|++|++++|.+..+| .++.+++|++|++++|. +..+|..   .++|+.|++++|.. ..+|. ++.+++|+
T Consensus       171 ~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l-~~lp~-~~~l~~L~  240 (454)
T 1jl5_A          171 LP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNIL-EELPE-LQNLPFLT  240 (454)
T ss_dssp             CC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCC-SSCCC-CTTCTTCC
T ss_pred             Cc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcC-Ccccc-cCCCCCCC
Confidence            43   47888888888888777 67888888888888887 5555542   24788888888744 36663 77788888


Q ss_pred             cccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhh-hh
Q 037465          221 TLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRK-KE  299 (432)
Q Consensus       221 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~  299 (432)
                      +|++.++....      .+.   ..++|+.|+++++.- ...+.       ..++|+.|++++|.+.+-+....... -.
T Consensus       241 ~L~l~~N~l~~------l~~---~~~~L~~L~l~~N~l-~~l~~-------~~~~L~~L~ls~N~l~~l~~~~~~L~~L~  303 (454)
T 1jl5_A          241 TIYADNNLLKT------LPD---LPPSLEALNVRDNYL-TDLPE-------LPQSLTFLDVSENIFSGLSELPPNLYYLN  303 (454)
T ss_dssp             EEECCSSCCSS------CCS---CCTTCCEEECCSSCC-SCCCC-------CCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred             EEECCCCcCCc------ccc---cccccCEEECCCCcc-cccCc-------ccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence            88887765542      111   124566666554321 11100       11344444444443221000000000 00


Q ss_pred             hhHhhhhcCCCC-CCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccc---cC
Q 037465          300 KDEQLLKALQPP-VNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKR---VG  374 (432)
Q Consensus       300 ~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~---~~  374 (432)
                      ........+... ++|++|++++|....+|..   +++|+.|++++|. ++.+|.  .++ |++|++++|. ++.   +|
T Consensus       304 l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~L~~N~-l~~l~~ip  376 (454)
T 1jl5_A          304 ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPE--LPQNLKQLHVEYNP-LREFPDIP  376 (454)
T ss_dssp             CCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCCCC
T ss_pred             CcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCc-cccccc--hhhhccEEECCCCC-CCcCCCCh
Confidence            000000112223 5899999998887777754   5899999999995 446776  467 9999999987 554   33


Q ss_pred             ccccCCCCCCCCC--CCCCCCCcceEEEeCCccc
Q 037465          375 NEFLGIEESSEDD--PSSSSSSSSELSIEGCPLL  406 (432)
Q Consensus       375 ~~~~~~~~~~~~~--~~~~~~~L~~L~i~~cp~L  406 (432)
                      ..+........+.  | ..+++|+.|++++++--
T Consensus       377 ~~l~~L~~n~~~~~i~-~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          377 ESVEDLRMNSHLAEVP-ELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             TTCCEEECCC------------------------
T ss_pred             HHHHhhhhcccccccc-cccCcCCEEECCCCcCC
Confidence            3322110000000  1 12478888888887643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=6.8e-21  Score=188.47  Aligned_cols=234  Identities=12%  Similarity=0.047  Sum_probs=146.1

Q ss_pred             cCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccc
Q 037465           83 FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLP  162 (432)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp  162 (432)
                      +++|++|++++|.+     .+. ++..|..+++|++|++++         +.+...++ +..+++|++|++++|.+..+|
T Consensus        33 ~~~L~~L~Ls~n~l-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~   96 (487)
T 3oja_A           33 AWNVKELDLSGNPL-----SQI-SAADLAPFTKLELLNLSS---------NVLYETLD-LESLSTLRTLDLNNNYVQELL   96 (487)
T ss_dssp             GGGCCEEECCSSCC-----CCC-CGGGGTTCTTCCEEECTT---------SCCEEEEE-CTTCTTCCEEECCSSEEEEEE
T ss_pred             CCCccEEEeeCCcC-----CCC-CHHHHhCCCCCCEEEeeC---------CCCCCCcc-cccCCCCCEEEecCCcCCCCC
Confidence            34788999988843     333 455688888999999988         55665544 888888999999988888776


Q ss_pred             hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcccc
Q 037465          163 ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL  242 (432)
Q Consensus       163 ~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  242 (432)
                      ..    ++|++|++++|. +..++.  ..+++|+.|++++|......|..++.+++|+.|+++++....     ..+..+
T Consensus        97 ~~----~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l  164 (487)
T 3oja_A           97 VG----PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAEL  164 (487)
T ss_dssp             EC----TTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGG
T ss_pred             CC----CCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHH
Confidence            33    788889988887 444443  346788888888887666666777888888888888776552     233344


Q ss_pred             c-cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEee
Q 037465          243 K-NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVY  321 (432)
Q Consensus       243 ~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  321 (432)
                      . .+++|+.|+++++.- ...     .....+++|+.|++++|.+.               .++..+..+++|+.|++++
T Consensus       165 ~~~l~~L~~L~Ls~N~l-~~~-----~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFI-YDV-----KGQVVFAKLKTLDLSSNKLA---------------FMGPEFQSAAGVTWISLRN  223 (487)
T ss_dssp             GGGTTTCCEEECTTSCC-CEE-----ECCCCCTTCCEEECCSSCCC---------------EECGGGGGGTTCSEEECTT
T ss_pred             hhhCCcccEEecCCCcc-ccc-----cccccCCCCCEEECCCCCCC---------------CCCHhHcCCCCccEEEecC
Confidence            3 566777777766332 111     12234566666666666521               1222244445555555555


Q ss_pred             eCCCCCChhhhccCCCcEEEEeCCCCC-CCCC-CCCCcc-cceEecc
Q 037465          322 YGGNIFPKWLTSLTNLRNLYLSSCFNC-EHLP-PLGKLP-LEKLTLY  365 (432)
Q Consensus       322 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~l~-~~~~l~-L~~L~l~  365 (432)
                      |....+|.++..+++|+.|++++|... ..+| .++.++ |+.+++.
T Consensus       224 N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            555555555555555555555555433 1222 234445 5555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=3.3e-19  Score=164.12  Aligned_cols=200  Identities=21%  Similarity=0.165  Sum_probs=125.1

Q ss_pred             CCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccC-Chhh
Q 037465          113 LACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLREL-PAGI  189 (432)
Q Consensus       113 l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~i  189 (432)
                      .++|++|++++         +.++.++ ..+..+++|++|++++|.+..+ |..+..+++|++|++++|..+..+ |..+
T Consensus        31 ~~~l~~L~l~~---------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           31 PAASQRIFLHG---------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             CTTCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CCCceEEEeeC---------CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            45677777777         5566654 3466677777777777776655 456667777777777776534444 5556


Q ss_pred             hcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcc
Q 037465          190 GKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQ  269 (432)
Q Consensus       190 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  269 (432)
                      ..+++|++|++++|......|..+..+++|++|++.++....                                 .....
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------------~~~~~  148 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------------------------LPDDT  148 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------------------CCTTT
T ss_pred             cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---------------------------------cCHhH
Confidence            667777777777765544444555666666666655443321                                 01122


Q ss_pred             cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCC
Q 037465          270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNC  348 (432)
Q Consensus       270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  348 (432)
                      +..+++|+.|++++|.+              .......+..+++|++|++++|....+ |.++..+++|+.|++++|...
T Consensus       149 ~~~l~~L~~L~l~~n~l--------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRI--------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTCTTCCEEECCSSCC--------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hccCCCccEEECCCCcc--------------cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            44556677777776652              111223466677888888888776654 666777888888888888544


Q ss_pred             CCCC-CCCCcc-cceEeccccc
Q 037465          349 EHLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       349 ~~l~-~~~~l~-L~~L~l~~c~  368 (432)
                      ...+ .++.++ |+.|++++|+
T Consensus       215 ~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          215 ALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSC
T ss_pred             cCCHHHcccCcccCEEeccCCC
Confidence            4332 266778 8888888776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=1.2e-20  Score=175.97  Aligned_cols=247  Identities=15%  Similarity=0.092  Sum_probs=186.3

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc--ccchhhh-------ccCCccEEeccccc
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK--RLPETLC-------ELYNLQKLDIRWCR  180 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~  180 (432)
                      ++..++|+.|++++         +.+ .+|..+...  |+.|++++|.+.  .+|..+.       .+++|++|++++|.
T Consensus        39 ~~~~~~L~~l~l~~---------n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  106 (312)
T 1wwl_A           39 YGGGRSLEYLLKRV---------DTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE  106 (312)
T ss_dssp             EEEEEECTTHHHHC---------CTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred             EccCCCceeEeecc---------ccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence            56677889999998         556 778766544  899999999875  4666665       79999999999999


Q ss_pred             ccccCChhh--hcccccceEEcCCCCccccCCccCCcc-----cccccccceEecccccCCCCcCccccccCccCCceee
Q 037465          181 NLRELPAGI--GKLMNMRSLLNDNTRSLKYMPIGISKL-----TSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGI  253 (432)
Q Consensus       181 ~~~~lp~~i--~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  253 (432)
                      ..+.+|..+  +.+++|++|++++|..... |..++.+     ++|++|++.++...     ...+..++++++|+.|++
T Consensus       107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          107 VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-----NFSCEQVRVFPALSTLDL  180 (312)
T ss_dssp             CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-----CCCTTTCCCCSSCCEEEC
T ss_pred             ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-----cchHHHhccCCCCCEEEC
Confidence            666888876  8899999999999965554 7777776     89999999998876     334467889999999999


Q ss_pred             CCCCCCCCchhhhhcc--cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC--h
Q 037465          254 EGLGNVSHLDEAERLQ--LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP--K  329 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~  329 (432)
                      ++..-....  ..+..  +..+++|++|++++|.+.+.           .......+..+++|++|++++|.....+  .
T Consensus       181 s~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          181 SDNPELGER--GLISALCPLKFPTLQVLALRNAGMETP-----------SGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             CSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCH-----------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             CCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcch-----------HHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            985422111  12223  37889999999999984210           0112233456789999999998877644  3


Q ss_pred             hhhccCCCcEEEEeCCCCCCCCCC-CCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465          330 WLTSLTNLRNLYLSSCFNCEHLPP-LGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       330 ~l~~l~~L~~L~l~~~~~~~~l~~-~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                      .+..+++|+.|++++|... .+|. +.  + |+.|++++|. ++.+|.  .           ..+++|++|++++++
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~--~-----------~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS--P-----------DELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC--T-----------TTSCEEEEEECTTCT
T ss_pred             hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh--H-----------hhCCCCCEEeccCCC
Confidence            4446899999999999654 6664 33  8 9999999997 887754  2           248899999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=2.9e-19  Score=176.73  Aligned_cols=216  Identities=16%  Similarity=0.049  Sum_probs=170.5

Q ss_pred             cCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhh
Q 037465          112 KLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIG  190 (432)
Q Consensus       112 ~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~  190 (432)
                      .+++|++|++++         +.+..+ |..+..+++|++|++++|.+..+++ +..+++|++|++++|. +..+|.   
T Consensus        32 ~~~~L~~L~Ls~---------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---   97 (487)
T 3oja_A           32 SAWNVKELDLSG---------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV---   97 (487)
T ss_dssp             TGGGCCEEECCS---------SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE---
T ss_pred             cCCCccEEEeeC---------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC---
Confidence            345899999999         667776 5689999999999999999987765 8999999999999998 665553   


Q ss_pred             cccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhccc
Q 037465          191 KLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL  270 (432)
Q Consensus       191 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l  270 (432)
                       .++|+.|++++|......+   ..+++|+.|++.++...     ...+..++.+++|+.|++++..-    ....+..+
T Consensus        98 -~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~l  164 (487)
T 3oja_A           98 -GPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNEI----DTVNFAEL  164 (487)
T ss_dssp             -CTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTSCC----CEEEGGGG
T ss_pred             -CCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCCCC----CCcChHHH
Confidence             4899999999996554333   24688999999988766     33455678899999999998432    22233444


Q ss_pred             c-cccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC
Q 037465          271 Y-NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE  349 (432)
Q Consensus       271 ~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  349 (432)
                      . .+++|+.|++++|.+.+               . .....+++|+.|++++|....+|..+..+++|+.|++++|....
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~---------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFIYD---------------V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             GGGTTTCCEEECTTSCCCE---------------E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             hhhCCcccEEecCCCcccc---------------c-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence            3 78999999999998321               1 33446899999999999998888888899999999999996654


Q ss_pred             CCCCCCCcc-cceEeccccccc
Q 037465          350 HLPPLGKLP-LEKLTLYNLKSV  370 (432)
Q Consensus       350 ~l~~~~~l~-L~~L~l~~c~~l  370 (432)
                      ..+.++.++ |+.|++++|+-.
T Consensus       229 lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          229 IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cchhhccCCCCCEEEcCCCCCc
Confidence            344578889 999999999843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=3.9e-18  Score=172.48  Aligned_cols=254  Identities=20%  Similarity=0.161  Sum_probs=191.2

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccch
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE  163 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~  163 (432)
                      .++++|++++|.++      . +|..+.  ++|++|++++         +.++.+|.   .+++|++|++++|.++.+|.
T Consensus        40 ~~l~~L~ls~n~L~------~-lp~~l~--~~L~~L~L~~---------N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~   98 (622)
T 3g06_A           40 NGNAVLNVGESGLT------T-LPDCLP--AHITTLVIPD---------NNLTSLPA---LPPELRTLEVSGNQLTSLPV   98 (622)
T ss_dssp             HCCCEEECCSSCCS------C-CCSCCC--TTCSEEEECS---------CCCSCCCC---CCTTCCEEEECSCCCSCCCC
T ss_pred             CCCcEEEecCCCcC------c-cChhhC--CCCcEEEecC---------CCCCCCCC---cCCCCCEEEcCCCcCCcCCC
Confidence            46899999999653      2 333233  7999999999         67888886   57999999999999999996


Q ss_pred             hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccc
Q 037465          164 TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLK  243 (432)
Q Consensus       164 ~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  243 (432)
                         .+++|++|++++|. +..+|.   .+++|+.|++++|. +..+|..   +++|++|++.+|....      .+.   
T Consensus        99 ---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~------l~~---  158 (622)
T 3g06_A           99 ---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS------LPA---  158 (622)
T ss_dssp             ---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSC------CCC---
T ss_pred             ---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCC------cCC---
Confidence               78999999999998 777776   67899999999994 5567764   4899999999886653      111   


Q ss_pred             cCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeC
Q 037465          244 NLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYG  323 (432)
Q Consensus       244 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  323 (432)
                      .+.+|+.|+++++.- ...+       ..+++|+.|++++|.+.+               ++   ..+++|+.|++.+|.
T Consensus       159 ~~~~L~~L~L~~N~l-~~l~-------~~~~~L~~L~Ls~N~l~~---------------l~---~~~~~L~~L~L~~N~  212 (622)
T 3g06_A          159 LPSELCKLWAYNNQL-TSLP-------MLPSGLQELSVSDNQLAS---------------LP---TLPSELYKLWAYNNR  212 (622)
T ss_dssp             CCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCSC---------------CC---CCCTTCCEEECCSSC
T ss_pred             ccCCCCEEECCCCCC-CCCc-------ccCCCCcEEECCCCCCCC---------------CC---CccchhhEEECcCCc
Confidence            245788888877432 2211       456899999999998321               11   235799999999999


Q ss_pred             CCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeC
Q 037465          324 GNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEG  402 (432)
Q Consensus       324 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~  402 (432)
                      ...+|.   .+++|+.|++++|. ++.+|  ..++ |+.|++++|. ++.+|.               .+++|+.|++++
T Consensus       213 l~~l~~---~~~~L~~L~Ls~N~-L~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------------~~~~L~~L~Ls~  270 (622)
T 3g06_A          213 LTSLPA---LPSGLKELIVSGNR-LTSLP--VLPSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR  270 (622)
T ss_dssp             CSSCCC---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCS
T ss_pred             ccccCC---CCCCCCEEEccCCc-cCcCC--CCCCcCcEEECCCCC-CCcCCc---------------ccccCcEEeCCC
Confidence            888775   35899999999994 45566  4568 9999999996 887765               378999999999


Q ss_pred             CccccccccCCCCCCcccccCCCCccCCCC
Q 037465          403 CPLLENRYREGKGEDWHKISHIPHIQMSPD  432 (432)
Q Consensus       403 cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (432)
                      | .++.+.     ..+..++++..+.+++|
T Consensus       271 N-~L~~lp-----~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          271 N-QLTRLP-----ESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             S-CCCSCC-----GGGGGSCTTCEEECCSC
T ss_pred             C-CCCcCC-----HHHhhccccCEEEecCC
Confidence            8 555442     22445555655656543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=2.6e-21  Score=186.18  Aligned_cols=270  Identities=17%  Similarity=0.114  Sum_probs=174.7

Q ss_pred             eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcc-cccCcc
Q 037465           63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLI-TEIPEN  141 (432)
Q Consensus        63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~lp~~  141 (432)
                      ++...+...++..++..+..+++|++|++++|.++....  ..+...+..+++|++|++++|..      +.+ +.+|..
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~------~~l~~~~~~~   82 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFT------GRVKDEIPEA   82 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCT------TSCGGGSHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCccccc------CccccchhHH
Confidence            333333444445577788889999999999995432110  01333477899999999998521      111 123433


Q ss_pred             -------ccCCccccEEEeCCccccc-----cchhhhccCCccEEeccccccccc----CChhhhcc---------cccc
Q 037465          142 -------VGKLIHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCRNLRE----LPAGIGKL---------MNMR  196 (432)
Q Consensus       142 -------~~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~----lp~~i~~l---------~~L~  196 (432)
                             +..+++|++|++++|.+..     +|..+..+++|++|++++|.....    ++..+..+         ++|+
T Consensus        83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A           83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence                   4788999999999999775     777889999999999999984322    33334444         8999


Q ss_pred             eEEcCCCCcc-ccCC---ccCCcccccccccceEecccccCCCCcCcc-ccccCccCCceeeCCCCCCCCchhhhhcccc
Q 037465          197 SLLNDNTRSL-KYMP---IGISKLTSLRTLGKFVVGGGVDGSSTCRLE-SLKNLQLLRECGIEGLGNVSHLDEAERLQLY  271 (432)
Q Consensus       197 ~L~l~~~~~~-~~~p---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  271 (432)
                      +|++++|... ..++   ..+..+++|++|++.+|....... ....+ .+..+++|+.|+++++.-........+..+.
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~-~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~  241 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK  241 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence            9999998654 2333   346677888888888776542000 00222 6677788888888774321111134455677


Q ss_pred             cccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcC--CCCCCCcEEEEeeeCCCC-----CChhh-hccCCCcEEEEe
Q 037465          272 NQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL--QPPVNVEELWIVYYGGNI-----FPKWL-TSLTNLRNLYLS  343 (432)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----~~~~l-~~l~~L~~L~l~  343 (432)
                      .+++|+.|++++|.+.+.          ....++..+  ..+++|++|++++|....     +|.++ .++++|+.|+++
T Consensus       242 ~~~~L~~L~L~~n~i~~~----------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSAR----------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             GCTTCCEEECTTCCCCHH----------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             cCCCcCEEECCCCCCchh----------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence            778888888888873211          122344555  337788888888777765     66666 357888888888


Q ss_pred             CCCCCCCC
Q 037465          344 SCFNCEHL  351 (432)
Q Consensus       344 ~~~~~~~l  351 (432)
                      +|......
T Consensus       312 ~N~l~~~~  319 (386)
T 2ca6_A          312 GNRFSEED  319 (386)
T ss_dssp             TSBSCTTS
T ss_pred             CCcCCcch
Confidence            88655444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=7.8e-20  Score=172.33  Aligned_cols=124  Identities=16%  Similarity=0.158  Sum_probs=77.3

Q ss_pred             ccEEEEecCCcCccCccCCcchhhhccC--CcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc--c
Q 037465           86 LRSLLIYDESLSNLSLNGSILPELFSKL--ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR--L  161 (432)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--l  161 (432)
                      ++.++++++.+     .    +..+..+  ++++.|++++         +.+...+..+..+++|++|++++|.+..  +
T Consensus        49 ~~~l~l~~~~~-----~----~~~~~~~~~~~l~~L~l~~---------n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           49 WQTLDLTGKNL-----H----PDVTGRLLSQGVIAFRCPR---------SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             SSEEECTTCBC-----C----HHHHHHHHHTTCSEEECTT---------CEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred             heeeccccccC-----C----HHHHHhhhhccceEEEcCC---------ccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence            56677766632     1    2335555  6777777777         5555555556667777777777777652  6


Q ss_pred             chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccc--cCCccCCcccccccccceEe
Q 037465          162 PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLK--YMPIGISKLTSLRTLGKFVV  227 (432)
Q Consensus       162 p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~  227 (432)
                      |..+..+++|++|++++|......|..++.+++|++|++++|....  .++..+..+++|++|++.++
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            6667777777777777776444566667777777777777773222  23333445555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=4e-20  Score=187.89  Aligned_cols=61  Identities=18%  Similarity=0.086  Sum_probs=30.3

Q ss_pred             ccCCCcEEEEeCCCCCC-CCCC-CCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465          333 SLTNLRNLYLSSCFNCE-HLPP-LGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       333 ~l~~L~~L~l~~~~~~~-~l~~-~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                      .+++|+.|++++|.... .++. +..++ |++|+|++|+ ++........          ..+++|+.|++++|+
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~----------~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV----------TKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHH----------HHCSSCCEEEEESCB
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHH----------HhcCccCeeECcCCc
Confidence            35555555555554222 1221 24456 6666666666 4332111100          135677777777776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=1.8e-17  Score=154.05  Aligned_cols=102  Identities=21%  Similarity=0.368  Sum_probs=56.5

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR  160 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~  160 (432)
                      .++++|++|++++|.++.       ++. +..+++|++|++++         +.+..++. +..+++|++|++++|.+..
T Consensus        38 ~~l~~L~~L~l~~~~i~~-------l~~-~~~l~~L~~L~L~~---------n~i~~~~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-------IEG-VQYLNNLIGLELKD---------NQITDLAP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCS---------SCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HHcCCcCEEEeeCCCccC-------chh-hhccCCCCEEEccC---------CcCCCChh-HccCCCCCEEEccCCcCCC
Confidence            445566666666664321       222 55566666666666         44555544 5556666666666666555


Q ss_pred             cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCC
Q 037465          161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNT  203 (432)
Q Consensus       161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~  203 (432)
                      ++ .+..+++|++|++++|. +..++. +..+++|++|++++|
T Consensus       100 ~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n  139 (308)
T 1h6u_A          100 VS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN  139 (308)
T ss_dssp             CG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred             ch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC
Confidence            54 45556666666666655 444432 555555556555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=1.5e-17  Score=152.21  Aligned_cols=146  Identities=23%  Similarity=0.122  Sum_probs=103.6

Q ss_pred             EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCC
Q 037465           67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKL  145 (432)
Q Consensus        67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l  145 (432)
                      ...+..+..+|..+.  ++|++|++++|.+     +.. .+..+..+++|++|++++         +.++.++ ..+..+
T Consensus        13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l-----~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~l   75 (276)
T 2z62_A           13 QCMELNFYKIPDNLP--FSTKNLDLSFNPL-----RHL-GSYSFFSFPELQVLDLSR---------CEIQTIEDGAYQSL   75 (276)
T ss_dssp             ECTTSCCSSCCSSSC--TTCCEEECTTCCC-----CEE-CTTTTTTCTTCSEEECTT---------CCCCEECTTTTTTC
T ss_pred             EecCCCccccCCCCC--CCccEEECCCCcc-----ccc-CHhHhccccCCcEEECCC---------CcCCccCHHHccCC
Confidence            344455555666553  5688888888854     222 344578888888888888         5666664 367888


Q ss_pred             ccccEEEeCCccccccc-hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc-cCCccCCcccccccc
Q 037465          146 IHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK-YMPIGISKLTSLRTL  222 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L  222 (432)
                      ++|++|++++|.+..++ ..+..+++|++|++++|. +..++. .++.+++|++|++++|.... .+|..++.+++|++|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             cCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            88888888888887666 467888888888888887 444433 57778888888888885544 356677777777777


Q ss_pred             cceEeccc
Q 037465          223 GKFVVGGG  230 (432)
Q Consensus       223 ~l~~~~~~  230 (432)
                      ++.++...
T Consensus       155 ~Ls~N~l~  162 (276)
T 2z62_A          155 DLSSNKIQ  162 (276)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCCCC
Confidence            77766544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=4.7e-17  Score=151.28  Aligned_cols=189  Identities=21%  Similarity=0.230  Sum_probs=150.3

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      .++++.|++.++.+..++ .+..+++|++|++++|.++     +  ++. +..+++|++|++++         +.++.++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-----~--~~~-~~~l~~L~~L~L~~---------n~l~~~~  101 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-----D--LAP-LKNLTKITELELSG---------NPLKNVS  101 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCCSCCEEECCS---------CCCSCCG
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-----C--Chh-HccCCCCCEEEccC---------CcCCCch
Confidence            568999999999998876 6889999999999999643     3  344 89999999999999         6677775


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                       .+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. ++.+++|+.|++++|.. ..++. +..+++|
T Consensus       102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L  175 (308)
T 1h6u_A          102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKL  175 (308)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTC
T ss_pred             -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCC
Confidence             68899999999999999999874 8999999999999998 666664 88999999999999954 44554 7889999


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      +.|++.++....       ...+..+++|+.|+++++.- ....     .+..+++|+.|++++|.
T Consensus       176 ~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          176 TTLKADDNKISD-------ISPLASLPNLIEVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CEEECCSSCCCC-------CGGGGGCTTCCEEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred             CEEECCCCccCc-------ChhhcCCCCCCEEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence            999998876652       22367777788888777432 2111     25666777777777776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=2.9e-17  Score=149.81  Aligned_cols=198  Identities=17%  Similarity=0.148  Sum_probs=142.0

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      ..+.+++.++.+..+|..+.  ++++.|++++|.+     ... .+..|..+++|++|++++         +.++.+|..
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l-----~~~-~~~~~~~l~~L~~L~l~~---------n~l~~i~~~   79 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKL-----SSL-PSKAFHRLTKLRLLYLND---------NKLQTLPAG   79 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCC-----SCC-CTTSSSSCTTCCEEECCS---------SCCSCCCTT
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCC-----Cee-CHHHhcCCCCCCEEECCC---------CccCeeChh
Confidence            35578888888888887664  6799999999954     222 444588899999999998         667777655


Q ss_pred             -ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          142 -VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       142 -~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                       +..+++|++|++++|.+..+|. .+..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence             4779999999999999888875 45788999999999988444444456789999999999985443333447888899


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      ++|++.++....     .....+..+++|+.|++++..- ..   .....+..+++|+.|++++|.
T Consensus       160 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l-~~---~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          160 KELRLYNNQLKR-----VPEGAFDKLTELKTLKLDNNQL-KR---VPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CEEECCSSCCSC-----CCTTTTTTCTTCCEEECCSSCC-SC---CCTTTTTTCTTCCEEECCSSC
T ss_pred             ceeEecCCcCcE-----eChhHhccCCCcCEEECCCCcC-Cc---CCHHHhccccCCCEEEecCCC
Confidence            999888776542     2233466677777777776422 21   112335556677777777666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=1.4e-18  Score=176.61  Aligned_cols=129  Identities=13%  Similarity=-0.003  Sum_probs=55.8

Q ss_pred             CCccccEEEeCCcccc-----ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc---ccCCccCCc
Q 037465          144 KLIHLKYLNLSGLCIK-----RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL---KYMPIGISK  215 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~l~~  215 (432)
                      .+++|++|+++++.+.     .++..+..+++|++|++++|. ...+|..+..+++|++|+++.....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            3444555555544432     233333445555555555544 3334444455555555555432111   111222334


Q ss_pred             ccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEe
Q 037465          216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLE  282 (432)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  282 (432)
                      +++|+.|++.....      ...+..+..+++|+.|+++++. +..  ......+..+++|++|+++
T Consensus       269 ~~~L~~L~l~~~~~------~~l~~~~~~~~~L~~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP------NEMPILFPFAAQIRKLDLLYAL-LET--EDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CTTCCEEEETTCCT------TTGGGGGGGGGGCCEEEETTCC-CCH--HHHHHHHTTCTTCCEEEEE
T ss_pred             cccccccCccccch------hHHHHHHhhcCCCcEEecCCCc-CCH--HHHHHHHHhCcCCCEEecc
Confidence            44444443332211      1123334456666666666654 211  1122234455555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=1.5e-19  Score=173.86  Aligned_cols=245  Identities=18%  Similarity=0.075  Sum_probs=173.3

Q ss_pred             chhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEEEeCCcccc----ccchhh-------hccC
Q 037465          106 LPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYLNLSGLCIK----RLPETL-------CELY  169 (432)
Q Consensus       106 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~l~  169 (432)
                      +...+..+++|++|++++         +.++.     ++..+..+++|++|++++|.+.    .+|..+       ..++
T Consensus        24 l~~~l~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~   94 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSG---------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   94 (386)
T ss_dssp             TSHHHHHCSCCCEEECTT---------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             HHHHHhcCCCccEEECCC---------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence            445578899999999999         45544     4445778999999999998644    344443       6889


Q ss_pred             CccEEecccccccc----cCChhhhcccccceEEcCCCCcccc----CCccCCcc---------cccccccceEeccccc
Q 037465          170 NLQKLDIRWCRNLR----ELPAGIGKLMNMRSLLNDNTRSLKY----MPIGISKL---------TSLRTLGKFVVGGGVD  232 (432)
Q Consensus       170 ~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~l~~~~~~~~  232 (432)
                      +|++|++++|....    .+|..+..+++|++|++++|.....    ++..+..+         ++|++|++.+|.... 
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-  173 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-  173 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-
Confidence            99999999998544    3777889999999999999966432    22233344         899999998887652 


Q ss_pred             CCCCcCc---cccccCccCCceeeCCCCCCCCchh-hhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcC
Q 037465          233 GSSTCRL---ESLKNLQLLRECGIEGLGNVSHLDE-AERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKAL  308 (432)
Q Consensus       233 ~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (432)
                         ....   ..+..+++|+.|+++++.-...... ..+..+..+++|+.|++++|.+.+          .....++..+
T Consensus       174 ---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----------~g~~~l~~~l  240 (386)
T 2ca6_A          174 ---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----------LGSSALAIAL  240 (386)
T ss_dssp             ---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----------HHHHHHHHHG
T ss_pred             ---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----------HHHHHHHHHH
Confidence               1122   3566788999999988632111111 222377888999999999988311          1235566777


Q ss_pred             CCCCCCcEEEEeeeCCCC-----CChhhhc--cCCCcEEEEeCCCCCC----CCCC-C-CCcc-cceEeccccccccccC
Q 037465          309 QPPVNVEELWIVYYGGNI-----FPKWLTS--LTNLRNLYLSSCFNCE----HLPP-L-GKLP-LEKLTLYNLKSVKRVG  374 (432)
Q Consensus       309 ~~~~~L~~L~l~~~~~~~-----~~~~l~~--l~~L~~L~l~~~~~~~----~l~~-~-~~l~-L~~L~l~~c~~l~~~~  374 (432)
                      ..+++|++|++++|....     ++.++..  +++|+.|++++|....    .+|. + .++| |++|++++|+ ++..+
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~  319 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEED  319 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTS
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcch
Confidence            888899999998887654     2455543  8899999999986554    2442 3 4578 9999999887 55444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=2.2e-17  Score=152.05  Aligned_cols=202  Identities=18%  Similarity=0.051  Sum_probs=133.4

Q ss_pred             cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCcc
Q 037465           79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLC  157 (432)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~  157 (432)
                      .+.+++++++++++++.++     .  +|..+  .+++++|++++         +.++.+ |..+..+++|++|++++|.
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-----~--ip~~~--~~~l~~L~L~~---------N~l~~~~~~~~~~l~~L~~L~L~~n~   66 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-----A--LPPDL--PKDTTILHLSE---------NLLYTFSLATLMPYTRLTQLNLDRAE   66 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-----S--CCSCC--CTTCCEEECTT---------SCCSEEEGGGGTTCTTCCEEECTTSC
T ss_pred             cccccCCccEEECCCCCCC-----c--CCCCC--CCCCCEEEcCC---------CcCCccCHHHhhcCCCCCEEECCCCc
Confidence            3567788888888888542     2  23222  26788888888         566666 5678888888899998888


Q ss_pred             ccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCc
Q 037465          158 IKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTC  237 (432)
Q Consensus       158 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~  237 (432)
                      +..++.. +.+++|++|++++|. +..+|..+..+++|+.|++++|......+..+..+++|++|++.++....     .
T Consensus        67 l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~  139 (290)
T 1p9a_G           67 LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----L  139 (290)
T ss_dssp             CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----C
T ss_pred             cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----c
Confidence            8887754 788888888888887 67788778888888888888885544334557777778887777665432     1


Q ss_pred             CccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEE
Q 037465          238 RLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEEL  317 (432)
Q Consensus       238 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  317 (432)
                      ....+..++                            +|+.|++++|.+.              .-....+..+++|+.|
T Consensus       140 ~~~~~~~l~----------------------------~L~~L~L~~N~l~--------------~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          140 PPGLLTPTP----------------------------KLEKLSLANNNLT--------------ELPAGLLNGLENLDTL  177 (290)
T ss_dssp             CTTTTTTCT----------------------------TCCEEECTTSCCS--------------CCCTTTTTTCTTCCEE
T ss_pred             Chhhccccc----------------------------CCCEEECCCCcCC--------------ccCHHHhcCcCCCCEE
Confidence            122233444                            4444444444411              1111233445666666


Q ss_pred             EEeeeCCCCCChhhhccCCCcEEEEeCCCC
Q 037465          318 WIVYYGGNIFPKWLTSLTNLRNLYLSSCFN  347 (432)
Q Consensus       318 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~  347 (432)
                      ++++|....+|..+...++|+.|++.+|+.
T Consensus       178 ~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             ECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            666666666676666667777777777753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=1e-17  Score=153.05  Aligned_cols=150  Identities=23%  Similarity=0.275  Sum_probs=74.0

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      .++++.+.+.++.+..++ .+..+++|++|++++|.+.     +  ++ .+..+++|++|++++         +.++.++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-----~--~~-~l~~l~~L~~L~L~~---------n~l~~~~  101 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-----D--IS-ALKELTNLTYLILTG---------NQLQSLP  101 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-----C--CG-GGTTCTTCCEEECTT---------SCCCCCC
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-----C--ch-hhcCCCCCCEEECCC---------CccCccC
Confidence            344555555555555432 3455555555555555331     1  22 255555555555555         3444443


Q ss_pred             c-cccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCcc
Q 037465          140 E-NVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKL  216 (432)
Q Consensus       140 ~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l  216 (432)
                      . .+..+++|++|++++|.+..+|+. +..+++|++|++++|. +..+|.. ++.+++|+.|++++|......+..++.+
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  180 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL  180 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence            2 245555555555555555554432 4555555555555554 3333322 3455555555555553332222334455


Q ss_pred             cccccccceEec
Q 037465          217 TSLRTLGKFVVG  228 (432)
Q Consensus       217 ~~L~~L~l~~~~  228 (432)
                      ++|++|++.++.
T Consensus       181 ~~L~~L~L~~N~  192 (272)
T 3rfs_A          181 TQLKDLRLYQNQ  192 (272)
T ss_dssp             TTCCEEECCSSC
T ss_pred             ccCCEEECCCCc
Confidence            555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=1.5e-17  Score=152.16  Aligned_cols=129  Identities=17%  Similarity=0.090  Sum_probs=90.5

Q ss_pred             CcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhc
Q 037465          114 ACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGK  191 (432)
Q Consensus       114 ~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~  191 (432)
                      ++|++|++++         +.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|......+..+..
T Consensus        28 ~~l~~L~ls~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSF---------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTT---------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCC---------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            4688888888         66777654 67888888888888888887764 6778888888888888744444466778


Q ss_pred             ccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465          192 LMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG  255 (432)
Q Consensus       192 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (432)
                      +++|+.|++++|......+..++.+++|++|++.++....    ...+..++.+++|+.|++++
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCS
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCchhhccCCCCCEEECCC
Confidence            8888888888885544444457777788888777665542    12234455555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=2.6e-17  Score=150.27  Aligned_cols=220  Identities=17%  Similarity=0.128  Sum_probs=165.0

Q ss_pred             EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCc
Q 037465           67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLI  146 (432)
Q Consensus        67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~  146 (432)
                      .+....+.. ......+++|+.|++++|.++.       ++. +..+++|++|++++         +.+..++ .+..++
T Consensus        25 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~-------~~~-l~~l~~L~~L~l~~---------n~l~~~~-~l~~l~   85 (272)
T 3rfs_A           25 NLKKKSVTD-AVTQNELNSIDQIIANNSDIKS-------VQG-IQYLPNVRYLALGG---------NKLHDIS-ALKELT   85 (272)
T ss_dssp             HHTCSCTTS-EECHHHHTTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECTT---------SCCCCCG-GGTTCT
T ss_pred             HhcCccccc-ccccccccceeeeeeCCCCccc-------ccc-cccCCCCcEEECCC---------CCCCCch-hhcCCC
Confidence            334444443 2345678999999999995432       333 78899999999999         5666664 788999


Q ss_pred             cccEEEeCCccccccchh-hhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCccCCcccccccccc
Q 037465          147 HLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGK  224 (432)
Q Consensus       147 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  224 (432)
                      +|++|++++|.+..+++. +..+++|++|++++|. +..++ ..++.+++|++|++++|......+..++.+++|++|++
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            999999999999988764 6899999999999998 54554 44788999999999999655444455789999999999


Q ss_pred             eEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhh
Q 037465          225 FVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQL  304 (432)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  304 (432)
                      .++....     .....++.+++|+.|+++++.-.    ...+..+..+++|+.|++++|.+                  
T Consensus       165 ~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~------------------  217 (272)
T 3rfs_A          165 SYNQLQS-----LPEGVFDKLTQLKDLRLYQNQLK----SVPDGVFDRLTSLQYIWLHDNPW------------------  217 (272)
T ss_dssp             CSSCCCC-----CCTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCB------------------
T ss_pred             CCCCcCc-----cCHHHhcCCccCCEEECCCCcCC----ccCHHHHhCCcCCCEEEccCCCc------------------
Confidence            9987652     23344688899999999885322    22334578899999999999982                  


Q ss_pred             hhcCCCCCCCcEEEEeeeCCC-CCChhhhccCC
Q 037465          305 LKALQPPVNVEELWIVYYGGN-IFPKWLTSLTN  336 (432)
Q Consensus       305 ~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~  336 (432)
                         ...++.|+.+.++.+... .+|.+++.++.
T Consensus       218 ---~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          218 ---DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             ---CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ---cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence               244677888887766554 35766665443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=4.7e-17  Score=148.40  Aligned_cols=123  Identities=24%  Similarity=0.281  Sum_probs=68.2

Q ss_pred             ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccchh
Q 037465           86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPET  164 (432)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~  164 (432)
                      .++++++++.++     .  +|..+  .++|+.|++++         +.++.++. .+..+++|++|++++|.+..+|..
T Consensus        18 ~~~l~~~~~~l~-----~--ip~~~--~~~l~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~   79 (270)
T 2o6q_A           18 KNSVDCSSKKLT-----A--IPSNI--PADTKKLDLQS---------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG   79 (270)
T ss_dssp             TTEEECTTSCCS-----S--CCSCC--CTTCSEEECCS---------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred             CCEEEccCCCCC-----c--cCCCC--CCCCCEEECcC---------CCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence            566666666432     1  22212  14566677766         45555543 566666777777766666666653


Q ss_pred             -hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccceEe
Q 037465          165 -LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVV  227 (432)
Q Consensus       165 -i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  227 (432)
                       +..+++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|++|++.++
T Consensus        80 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             TTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence             3556666777766666 434433 3455666666666666443333333455555555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=5.7e-17  Score=149.34  Aligned_cols=197  Identities=17%  Similarity=0.091  Sum_probs=152.8

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.+.+.++++..+|..+.  +++++|++++|.+     ... .+..+..+++|++|++++         +.++.++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~   71 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLL-----YTF-SLATLMPYTRLTQLNLDR---------AELTKLQ   71 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCC-----SEE-EGGGGTTCTTCCEEECTT---------SCCCEEE
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcC-----Ccc-CHHHhhcCCCCCEEECCC---------CccCccc
Confidence            4568889999999999888764  6899999999954     333 456689999999999999         6788876


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccccCCccCCcccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLKYMPIGISKLTS  218 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~  218 (432)
                      .. +.+++|++|++++|.+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|......+..+..+++
T Consensus        72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence            54 78999999999999999999989999999999999998 55555 56889999999999999655444455788999


Q ss_pred             cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      |+.|++.++....     .....+..+++|+.|++++..- ..    .+..+....+|+.+++++|.
T Consensus       150 L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l-~~----ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          150 LEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSL-YT----IPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCC-CC----CCTTTTTTCCCSEEECCSCC
T ss_pred             CCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcC-Cc----cChhhcccccCCeEEeCCCC
Confidence            9999998876652     2223456677788887776322 11    23334455667777777766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=2.8e-18  Score=161.68  Aligned_cols=250  Identities=13%  Similarity=0.058  Sum_probs=165.4

Q ss_pred             ceEEEEeecCCCCCCCcccccc--CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc--
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEF--DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE--  137 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~--  137 (432)
                      ..+++++.++.+.  +..+.++  ++++.|++.+|.+     .+. ++. +..+++|++|++++|         .+..  
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-----~~~-~~~-~~~~~~L~~L~L~~~---------~l~~~~  109 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-----DQP-LAE-HFSPFRVQHMDLSNS---------VIEVST  109 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-----CSC-CCS-CCCCBCCCEEECTTC---------EECHHH
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccc-----ccc-chh-hccCCCCCEEEccCC---------CcCHHH
Confidence            3566777776655  4556666  7888998888843     333 233 557888999999884         4543  


Q ss_pred             cCccccCCccccEEEeCCcccc-ccchhhhccCCccEEecccccccc--cCChhhhcccccceEEcCCC-Ccccc-CCcc
Q 037465          138 IPENVGKLIHLKYLNLSGLCIK-RLPETLCELYNLQKLDIRWCRNLR--ELPAGIGKLMNMRSLLNDNT-RSLKY-MPIG  212 (432)
Q Consensus       138 lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~-~~~~~-~p~~  212 (432)
                      +|..+..+++|++|++++|.+. ..|..++.+++|++|++++|..+.  .++..+..+++|++|++++| ..... ++..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            6677788889999999988876 566778888899999999884344  36666788889999999888 44332 4566


Q ss_pred             CCccc-ccccccceEec--ccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCC
Q 037465          213 ISKLT-SLRTLGKFVVG--GGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDG  289 (432)
Q Consensus       213 l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  289 (432)
                      +..++ +|++|++.++.  ...    ...+..+..+++|+.|+++++..+.+   .....+..+++|++|++++|..   
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~---  259 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQK----SDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYD---  259 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCH----HHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTT---
T ss_pred             HHhcccCCCEEEeCCCcccCCH----HHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCCC---
Confidence            77888 89999888874  221    12344566788899999988754432   3344667788999999988841   


Q ss_pred             chHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhcc-CCCcEEEEeCCCCCCCCC
Q 037465          290 EDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSL-TNLRNLYLSSCFNCEHLP  352 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~  352 (432)
                                ........+..+++|++|++++| ..  ...+..+ .+|+.|++++|...+..|
T Consensus       260 ----------~~~~~~~~l~~~~~L~~L~l~~~-i~--~~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          260 ----------IIPETLLELGEIPTLKTLQVFGI-VP--DGTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             ----------CCGGGGGGGGGCTTCCEEECTTS-SC--TTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             ----------CCHHHHHHHhcCCCCCEEeccCc-cC--HHHHHHHHhhCcceEEecccCccccC
Confidence                      11122234455677777777766 11  1122222 234555566665555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.71  E-value=1.8e-18  Score=175.74  Aligned_cols=134  Identities=14%  Similarity=0.098  Sum_probs=68.5

Q ss_pred             CCceEEEEeecCCCCC-CCcccc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGAP-LPMSFF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      .++++.|++.++.+.. .+..+. .+++|++|++++|.    .+....++..+..+++|++|++++|. +++   .....
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~---~~~~~  175 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESD-VDD---VSGHW  175 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCE-EEC---CCGGG
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCc-cCC---cchHH
Confidence            3456666666665443 222232 46677777777663    22222244445567777777777642 111   01111


Q ss_pred             cCccccCCccccEEEeCCcc--cc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcC
Q 037465          138 IPENVGKLIHLKYLNLSGLC--IK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLND  201 (432)
Q Consensus       138 lp~~~~~l~~L~~L~L~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~  201 (432)
                      ++.....+++|++|++++|.  +.  .++..+..+++|++|++++|.....+|..+..+++|++|++.
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            22223355667777776664  21  233233445677777776664344455555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=3.8e-17  Score=146.21  Aligned_cols=198  Identities=17%  Similarity=0.192  Sum_probs=102.0

Q ss_pred             cccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCC-CCccccCC-ccCCcccccccc
Q 037465          147 HLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDN-TRSLKYMP-IGISKLTSLRTL  222 (432)
Q Consensus       147 ~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p-~~l~~l~~L~~L  222 (432)
                      +|++|++++|.++.+|+ .+..+++|++|++++|..+..++. .+..+++|++|++++ | .+..++ ..+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEE
Confidence            55555555555555554 455555556665555542333333 344555566666655 3 223333 344556666666


Q ss_pred             cceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeec-cccCCchHHHhhhhhhh
Q 037465          223 GKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFG-RVVDGEDEERRRKKEKD  301 (432)
Q Consensus       223 ~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~  301 (432)
                      ++.++....       ++.+..+++|+                         .|+.|++++| .+              .
T Consensus       111 ~l~~n~l~~-------lp~~~~l~~L~-------------------------~L~~L~l~~N~~l--------------~  144 (239)
T 2xwt_C          111 GIFNTGLKM-------FPDLTKVYSTD-------------------------IFFILEITDNPYM--------------T  144 (239)
T ss_dssp             EEEEECCCS-------CCCCTTCCBCC-------------------------SEEEEEEESCTTC--------------C
T ss_pred             eCCCCCCcc-------ccccccccccc-------------------------cccEEECCCCcch--------------h
Confidence            665554431       11133333333                         0113333333 20              0


Q ss_pred             HhhhhcCCCCCCCc-EEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCc-c-cceEeccccccccccCcc
Q 037465          302 EQLLKALQPPVNVE-ELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKL-P-LEKLTLYNLKSVKRVGNE  376 (432)
Q Consensus       302 ~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l-~-L~~L~l~~c~~l~~~~~~  376 (432)
                      ......+..+++|+ .|+++++....+|......++|+.|++++|..++.++  .++.+ + |+.|+++++. ++.++..
T Consensus       145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~  223 (239)
T 2xwt_C          145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK  223 (239)
T ss_dssp             EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT
T ss_pred             hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh
Confidence            00111233444555 5555555555555544444778888888885344443  35677 7 8888888876 6666542


Q ss_pred             ccCCCCCCCCCCCCCCCCcceEEEeCCccc
Q 037465          377 FLGIEESSEDDPSSSSSSSSELSIEGCPLL  406 (432)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L  406 (432)
                                    .+++|+.|.+.+++.|
T Consensus       224 --------------~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          224 --------------GLEHLKELIARNTWTL  239 (239)
T ss_dssp             --------------TCTTCSEEECTTC---
T ss_pred             --------------HhccCceeeccCccCC
Confidence                          4778888888887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.70  E-value=3.1e-17  Score=152.72  Aligned_cols=227  Identities=17%  Similarity=0.112  Sum_probs=123.9

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccc--cCCccccEEEeCCcccccc
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENV--GKLIHLKYLNLSGLCIKRL  161 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~--~~l~~L~~L~L~~~~l~~l  161 (432)
                      ..++.+.+.++.++...+..  +.. +..+++|++|++++|        ...+..|..+  ..+++|++|++++|.+...
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~--~~~-~~~~~~L~~L~l~~n--------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~  132 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVG--ALR-VLAYSRLKELTLEDL--------KITGTMPPLPLEATGLALSSLRLRNVSWATG  132 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHH--HHH-HHHHSCCCEEEEESC--------CCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred             cceeEEEEeCCcCCHHHHHH--HHH-hcccCceeEEEeeCC--------EeccchhhhhhhccCCCCCEEEeecccccch
Confidence            34667777776432211111  111 223466888888874        2233446555  7778888888888876632


Q ss_pred             -c----hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcccc--CC--ccCCcccccccccceEeccccc
Q 037465          162 -P----ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKY--MP--IGISKLTSLRTLGKFVVGGGVD  232 (432)
Q Consensus       162 -p----~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--~p--~~l~~l~~L~~L~l~~~~~~~~  232 (432)
                       +    ..+..+++|++|++++|......|..++.+++|++|++++|...+.  ++  ..++.+++|++|++.+|...  
T Consensus       133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--  210 (310)
T 4glp_A          133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--  210 (310)
T ss_dssp             TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--
T ss_pred             hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--
Confidence             1    2334577777777777774444445566777777777777754321  11  11244555555555544332  


Q ss_pred             CCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCC--
Q 037465          233 GSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP--  310 (432)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--  310 (432)
                                                  ..+......+..+++|++|++++|.+.+.              .+..+..  
T Consensus       211 ----------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------------~p~~~~~~~  248 (310)
T 4glp_A          211 ----------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRAT--------------VNPSAPRCM  248 (310)
T ss_dssp             ----------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCC--------------CCSCCSSCC
T ss_pred             ----------------------------chHHHHHHHHhcCCCCCEEECCCCCCCcc--------------chhhHHhcc
Confidence                                        11111111234455666666666652111              1112222  


Q ss_pred             -CCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccc
Q 037465          311 -PVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       311 -~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~  368 (432)
                       +++|++|++++|....+|.++.  ++|+.|++++|. ++.+|.+..+| |+.|++++++
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred             CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence             2566666666666666665543  677777777773 34445556667 7777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=2.5e-16  Score=140.84  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=97.7

Q ss_pred             CCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccE
Q 037465           72 GGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKY  150 (432)
Q Consensus        72 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~  150 (432)
                      .+..+|. +.  ++|++|++++|.+     +. +.+..|..+++|++|++++|        ..++.++. .+.++++|++
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l-----~~-i~~~~~~~l~~L~~L~l~~n--------~~l~~i~~~~f~~l~~L~~   84 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHL-----RT-IPSHAFSNLPNISRIYVSID--------VTLQQLESHSFYNLSKVTH   84 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCC-----SE-ECTTTTTTCTTCCEEEEECC--------SSCCEECTTTEESCTTCCE
T ss_pred             CccccCC-CC--CcccEEEEeCCcc-----eE-ECHHHccCCCCCcEEeCCCC--------CCcceeCHhHcCCCcCCcE
Confidence            3566666 43  3788899988854     22 24445788888999999883        23777754 6788888999


Q ss_pred             EEeCC-ccccccch-hhhccCCccEEecccccccccCChhhhcccccc---eEEcCCCCccccCC-ccCCcccccc-ccc
Q 037465          151 LNLSG-LCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMR---SLLNDNTRSLKYMP-IGISKLTSLR-TLG  223 (432)
Q Consensus       151 L~L~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~~p-~~l~~l~~L~-~L~  223 (432)
                      |++++ |.++.+|. .+..+++|++|++++|. +..+|. +..+++|+   .|++++|.....+| ..+..+++|+ .|+
T Consensus        85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C           85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             EECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            99988 77887774 57788888888888887 556775 77777777   88888874444444 3466677777 776


Q ss_pred             ceEec
Q 037465          224 KFVVG  228 (432)
Q Consensus       224 l~~~~  228 (432)
                      +.++.
T Consensus       163 l~~n~  167 (239)
T 2xwt_C          163 LYNNG  167 (239)
T ss_dssp             CCSCC
T ss_pred             cCCCC
Confidence            65543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=1.1e-18  Score=177.39  Aligned_cols=318  Identities=14%  Similarity=0.071  Sum_probs=164.1

Q ss_pred             CCceEEEEeecC-CCCC--CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcc-
Q 037465           60 GGKVRHLGLNFE-GGAP--LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLI-  135 (432)
Q Consensus        60 ~~~i~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-  135 (432)
                      .++++.|.+.++ .+..  ++..+.++++|++|++++|.++...  ...++.....+++|++|++++|.       ..+ 
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~~~L~~L~l~~~~-------~~~~  199 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS--GHWLSHFPDTYTSLVSLNISCLA-------SEVS  199 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC--GGGGGGSCTTCCCCCEEECTTCC-------SCCC
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc--hHHHHHHhhcCCcCcEEEecccC-------CcCC
Confidence            568888888877 3332  3344457888999999888543211  11134434567788888888751       011 


Q ss_pred             -cccCccccCCccccEEEeCCcc-ccccchhhhccCCccEEecccccc------------------------------cc
Q 037465          136 -TEIPENVGKLIHLKYLNLSGLC-IKRLPETLCELYNLQKLDIRWCRN------------------------------LR  183 (432)
Q Consensus       136 -~~lp~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~------------------------------~~  183 (432)
                       ..++..+..+++|++|++++|. +..+|..+..+++|+.|++.++..                              ..
T Consensus       200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~  279 (594)
T 2p1m_B          200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA  279 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred             HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence             1122223456888888888773 556666667777777776543310                              12


Q ss_pred             cCChhhhcccccceEEcCCCCcccc-CCccCCcccccccccceEecccccCCCCcCcccc-ccCccCCceeeCCC-----
Q 037465          184 ELPAGIGKLMNMRSLLNDNTRSLKY-MPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESL-KNLQLLRECGIEGL-----  256 (432)
Q Consensus       184 ~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~-----  256 (432)
                      .++..+..+++|+.|++++|..... ++..+..+++|++|++.++ ..     ...+..+ ..+++|+.|++.++     
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----~~~l~~l~~~~~~L~~L~L~~~~~~g~  353 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE-----DAGLEVLASTCKDLRELRVFPSEPFVM  353 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-----HHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-----HHHHHHHHHhCCCCCEEEEecCccccc
Confidence            2343444678888888888863221 1222456778888887765 22     1122222 24667777777332     


Q ss_pred             ---CCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhh------------------hhhh----hHhhhhcCCCC
Q 037465          257 ---GNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRR------------------KKEK----DEQLLKALQPP  311 (432)
Q Consensus       257 ---~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------------------~~~~----~~~~~~~l~~~  311 (432)
                         ..+.+  .........+++|+.|.+..+.+.+........                  ....    ...+...+..+
T Consensus       354 ~~~~~l~~--~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~  431 (594)
T 2p1m_B          354 EPNVALTE--QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC  431 (594)
T ss_dssp             SCSSCCCH--HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred             ccCCCCCH--HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence               22221  111111123455555544444421100000000                  0000    01111223334


Q ss_pred             CCCcEEEEeeeCCCCCChhhh-ccCCCcEEEEeCCCCCC-CCCCC-CCcc-cceEeccccccccccCccccCCCCCCCCC
Q 037465          312 VNVEELWIVYYGGNIFPKWLT-SLTNLRNLYLSSCFNCE-HLPPL-GKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDD  387 (432)
Q Consensus       312 ~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-~l~~~-~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  387 (432)
                      ++|++|++++......+..+. .+++|+.|++++|.... .+..+ ..+| |+.|+|++|+. +..+.....        
T Consensus       432 ~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~--------  502 (594)
T 2p1m_B          432 KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANA--------  502 (594)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTG--------
T ss_pred             CCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHH--------
Confidence            455555554411111122222 36777777777775322 12222 4467 88888888873 433222111        


Q ss_pred             CCCCCCCcceEEEeCCcc
Q 037465          388 PSSSSSSSSELSIEGCPL  405 (432)
Q Consensus       388 ~~~~~~~L~~L~i~~cp~  405 (432)
                        ..+++|+.|++++|+.
T Consensus       503 --~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          503 --SKLETMRSLWMSSCSV  518 (594)
T ss_dssp             --GGGGGSSEEEEESSCC
T ss_pred             --HhCCCCCEEeeeCCCC
Confidence              1378999999999976

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=1.3e-17  Score=158.74  Aligned_cols=231  Identities=13%  Similarity=0.073  Sum_probs=112.1

Q ss_pred             EeecCCCCC-CCccccccCcccEEEEecCCcCccCccCCcchhhhccCC-cceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465           67 GLNFEGGAP-LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLA-CLRALVISQSSSFSHPGPNLITEI-PENVG  143 (432)
Q Consensus        67 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~  143 (432)
                      .++.+.+.. +|..+...++|++|++++|.++....  ..+...+..++ +|++|++++         +.++.. +..+.
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~---------N~l~~~~~~~l~   72 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSG---------NSLGFKNSDELV   72 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCS---------SCGGGSCHHHHH
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcC---------CCCCHHHHHHHH
Confidence            445555554 33333444457777777774422110  00114466666 777777777         444443 33343


Q ss_pred             CC-----ccccEEEeCCccccccch-h----hhcc-CCccEEecccccccccCChhhh----c-ccccceEEcCCCCccc
Q 037465          144 KL-----IHLKYLNLSGLCIKRLPE-T----LCEL-YNLQKLDIRWCRNLRELPAGIG----K-LMNMRSLLNDNTRSLK  207 (432)
Q Consensus       144 ~l-----~~L~~L~L~~~~l~~lp~-~----i~~l-~~L~~L~l~~~~~~~~lp~~i~----~-l~~L~~L~l~~~~~~~  207 (432)
                      .+     ++|++|++++|.++..+. .    +..+ ++|++|++++|......+..+.    . .++|++|++++|....
T Consensus        73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            33     677777777777664332 2    3333 6777777777763332222332    2 2477777777775443


Q ss_pred             c----CCccCCccc-ccccccceEecccccCCCCcCcc----ccccC-ccCCceeeCCCCCCCCchhhhhccccc-ccCC
Q 037465          208 Y----MPIGISKLT-SLRTLGKFVVGGGVDGSSTCRLE----SLKNL-QLLRECGIEGLGNVSHLDEAERLQLYN-QQNL  276 (432)
Q Consensus       208 ~----~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~-~~~L  276 (432)
                      .    ++..+..++ +|++|++.+|....     ....    .+..+ ++|+.|+++++.-........+..+.. .++|
T Consensus       153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          153 KSSDELIQILAAIPANVNSLNLRGNNLAS-----KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGG-----SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHhcCCccccEeeecCCCCch-----hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence            2    222233333 66666666655432     1111    22233 356666665533211111122333333 2356


Q ss_pred             ceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeC
Q 037465          277 LCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYG  323 (432)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  323 (432)
                      ++|++++|.+.+..          ...+...+..+++|+.|++++|.
T Consensus       228 ~~L~Ls~N~l~~~~----------~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          228 VSLNLCLNCLHGPS----------LENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CEEECCSSCCCCCC----------HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             eEEECcCCCCCcHH----------HHHHHHHHhcCCCccEEEeccCC
Confidence            66666665533221          12233344445555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=3.9e-17  Score=155.48  Aligned_cols=254  Identities=14%  Similarity=0.048  Sum_probs=172.8

Q ss_pred             EEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-----ccccCCc-cccEEEeCCcccccc-
Q 037465           89 LLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-----ENVGKLI-HLKYLNLSGLCIKRL-  161 (432)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-----~~~~~l~-~L~~L~L~~~~l~~l-  161 (432)
                      +.++.+     .+++. ++.++...++|++|++++         +.++..+     ..+..++ +|++|++++|.+... 
T Consensus         3 ~~ls~n-----~~~~~-~~~~~~~~~~L~~L~Ls~---------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~   67 (362)
T 3goz_A            3 YKLTLH-----PGSNP-VEEFTSIPHGVTSLDLSL---------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN   67 (362)
T ss_dssp             EECCCC-----TTCCH-HHHHHTSCTTCCEEECTT---------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred             cccccc-----cchHH-HHHHHhCCCCceEEEccC---------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH
Confidence            456666     45554 667667777799999999         5677665     5677888 899999999998855 


Q ss_pred             chhhhcc-----CCccEEecccccccccCChhhh----cc-cccceEEcCCCCccccCCccC----Cc-ccccccccceE
Q 037465          162 PETLCEL-----YNLQKLDIRWCRNLRELPAGIG----KL-MNMRSLLNDNTRSLKYMPIGI----SK-LTSLRTLGKFV  226 (432)
Q Consensus       162 p~~i~~l-----~~L~~L~l~~~~~~~~lp~~i~----~l-~~L~~L~l~~~~~~~~~p~~l----~~-l~~L~~L~l~~  226 (432)
                      +..+..+     ++|++|++++|......+..++    .+ ++|+.|++++|......+..+    .. .++|++|++.+
T Consensus        68 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  147 (362)
T 3goz_A           68 SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG  147 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred             HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence            4566665     9999999999994445554444    34 899999999997654433333    23 36999999998


Q ss_pred             ecccccCCCCcCccccccCc-cCCceeeCCCCCCCCchhhhhcccccc-cCCceEEEeeccccCCchHHHhhhhhhhHhh
Q 037465          227 VGGGVDGSSTCRLESLKNLQ-LLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLCLHLEFGRVVDGEDEERRRKKEKDEQL  304 (432)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  304 (432)
                      |...... .......+..++ +|+.|+++++.-...........+..+ ++|++|++++|.+.+.          ....+
T Consensus       148 N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----------~~~~l  216 (362)
T 3goz_A          148 NDLGIKS-SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK----------SYAEL  216 (362)
T ss_dssp             SCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------CHHHH
T ss_pred             CcCCHHH-HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------HHHHH
Confidence            8765310 011223334554 899999998643333333344455566 5999999999984332          22334


Q ss_pred             hhcCCC-CCCCcEEEEeeeCCCCCC-----hhhhccCCCcEEEEeCCCCCCC-------C-CCCCCcc-cceEeccccc
Q 037465          305 LKALQP-PVNVEELWIVYYGGNIFP-----KWLTSLTNLRNLYLSSCFNCEH-------L-PPLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       305 ~~~l~~-~~~L~~L~l~~~~~~~~~-----~~l~~l~~L~~L~l~~~~~~~~-------l-~~~~~l~-L~~L~l~~c~  368 (432)
                      ...+.. .++|++|++++|.....+     ..+..+++|+.|++++|.....       + ..+..++ |+.|++++++
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            555544 458999999988776533     2334788999999999952211       1 1356778 9999999887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=8.8e-16  Score=142.89  Aligned_cols=155  Identities=17%  Similarity=0.009  Sum_probs=72.1

Q ss_pred             eEEEEeecCCCCC-CCccc--cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-
Q 037465           63 VRHLGLNFEGGAP-LPMSF--FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-  138 (432)
Q Consensus        63 i~~L~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-  138 (432)
                      ++.|.+.++.+.. .|..+  .++++|++|++++|.++...  .......+..+++|++|++++         +.+..+ 
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~~~~~~L~~L~Ls~---------n~l~~~~  161 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--SWLAELQQWLKPGLKVLSIAQ---------AHSPAFS  161 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--SSHHHHHTTBCSCCCEEEEEC---------CSSCCCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh--hhhHHHHhhhccCCCEEEeeC---------CCcchhh
Confidence            5555555555443 33333  45555555555555332100  000011233455555555555         334433 


Q ss_pred             CccccCCccccEEEeCCccccc---cch--hhhccCCccEEecccccccccCChh----hhcccccceEEcCCCCccccC
Q 037465          139 PENVGKLIHLKYLNLSGLCIKR---LPE--TLCELYNLQKLDIRWCRNLRELPAG----IGKLMNMRSLLNDNTRSLKYM  209 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~  209 (432)
                      |..++.+++|++|++++|.+..   ++.  .++.+++|++|++++|. +..++..    ++.+++|++|++++|......
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  240 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATV  240 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence            2345555555555555555332   221  12455555555555555 3333321    234455555555555444444


Q ss_pred             CccCCcc---cccccccceEecc
Q 037465          210 PIGISKL---TSLRTLGKFVVGG  229 (432)
Q Consensus       210 p~~l~~l---~~L~~L~l~~~~~  229 (432)
                      |..++.+   ++|++|++++|..
T Consensus       241 p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          241 NPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             CSCCSSCCCCTTCCCEECCSSCC
T ss_pred             hhhHHhccCcCcCCEEECCCCCC
Confidence            4444443   3555555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=2e-15  Score=142.87  Aligned_cols=237  Identities=20%  Similarity=0.113  Sum_probs=150.4

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-ccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~  143 (432)
                      .+..++++++++|..+  .+++++|++++|+++      .+.+..|.++++|++|+|++|        ...+.+|. .|.
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~------~i~~~~f~~l~~L~~L~Ls~N--------~i~~~i~~~~f~   76 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLR------VIQKGAFSGFGDLEKIEISQN--------DVLEVIEADVFS   76 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCS------EECTTSSTTCTTCCEEEEECC--------TTCCEECTTSBC
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCC------CcCHHHHcCCCCCCEEECcCC--------CCCCccChhHhh
Confidence            3556777788888766  357888999888542      224455888889999999884        22355543 467


Q ss_pred             CCccccE-EEeCCccccccc-hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCc-cCCccc-c
Q 037465          144 KLIHLKY-LNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPI-GISKLT-S  218 (432)
Q Consensus       144 ~l~~L~~-L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~-~  218 (432)
                      ++++|+. +.+..|++..++ ..+..+++|++|++++|. +..+|. ......++..|++.++..+..++. .+..+. .
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~  155 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  155 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence            7777665 455566788775 457788889999888887 555543 344566777788776655565553 233333 4


Q ss_pred             cccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhh
Q 037465          219 LRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKK  298 (432)
Q Consensus       219 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (432)
                      ++.|++.++....      .........+|+.+.+.+...+..++                                   
T Consensus       156 l~~L~L~~N~i~~------i~~~~f~~~~L~~l~l~~~n~l~~i~-----------------------------------  194 (350)
T 4ay9_X          156 SVILWLNKNGIQE------IHNSAFNGTQLDELNLSDNNNLEELP-----------------------------------  194 (350)
T ss_dssp             CEEEECCSSCCCE------ECTTSSTTEEEEEEECTTCTTCCCCC-----------------------------------
T ss_pred             hhhhccccccccC------CChhhccccchhHHhhccCCcccCCC-----------------------------------
Confidence            6666666554432      12222222334444444322222211                                   


Q ss_pred             hhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecccc
Q 037465          299 EKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNL  367 (432)
Q Consensus       299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c  367 (432)
                            ...+..+++|+.|++++|....+|..  .+.+|+.|.+.++..++.+|.+..++ |+.+++.+.
T Consensus       195 ------~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          195 ------NDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             ------TTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             ------HHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence                  12344556666666666666666653  47888888888888888899888899 999988753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=1.4e-15  Score=143.96  Aligned_cols=230  Identities=16%  Similarity=0.135  Sum_probs=128.8

Q ss_pred             CcccccCccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccC-
Q 037465          133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYM-  209 (432)
Q Consensus       133 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~-  209 (432)
                      +.++++|..+  .+++++|+|++|.|+.+|+ .+..+++|++|++++|...+.+|.. +..++++.++....+..+..+ 
T Consensus        19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            4455555444  2455555555555555554 3455555666666555544444432 344555544333222233333 


Q ss_pred             CccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccc-cCCceEEEeeccccC
Q 037465          210 PIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ-QNLLCLHLEFGRVVD  288 (432)
Q Consensus       210 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~  288 (432)
                      |..+..+++|++|++.++....     .....+....++..+++.+...+...+   ...+..+ ..++.|++++|.+  
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~l~~l~l~~~~~i~~l~---~~~f~~~~~~l~~L~L~~N~i--  166 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKH-----LPDVHKIHSLQKVLLDIQDNINIHTIE---RNSFVGLSFESVILWLNKNGI--  166 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSS-----CCCCTTCCBSSCEEEEEESCTTCCEEC---TTSSTTSBSSCEEEECCSSCC--
T ss_pred             chhhhhcccccccccccccccc-----CCchhhcccchhhhhhhcccccccccc---ccchhhcchhhhhhccccccc--
Confidence            3445556666666666555432     111112222334444544433332211   1122232 4578888888872  


Q ss_pred             CchHHHhhhhhhhHhhhhcCCCCCCCcEEEEee-eCCCCCCh-hhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEecc
Q 037465          289 GEDEERRRKKEKDEQLLKALQPPVNVEELWIVY-YGGNIFPK-WLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLY  365 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~  365 (432)
                                   ..+........+|+++.+.+ +....+|. .+..+++|+.|++++| .++.+|. +.+. |+.|.+.
T Consensus       167 -------------~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l  231 (350)
T 4ay9_X          167 -------------QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRAR  231 (350)
T ss_dssp             -------------CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECT
T ss_pred             -------------cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhc
Confidence                         23333444456788888864 55666665 4568999999999999 5666765 4477 8888888


Q ss_pred             ccccccccCccccCCCCCCCCCCCCCCCCcceEEEeC
Q 037465          366 NLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEG  402 (432)
Q Consensus       366 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~  402 (432)
                      ++.+++.+|.-             ..+++|+.+++..
T Consensus       232 ~~~~l~~lP~l-------------~~l~~L~~l~l~~  255 (350)
T 4ay9_X          232 STYNLKKLPTL-------------EKLVALMEASLTY  255 (350)
T ss_dssp             TCTTCCCCCCT-------------TTCCSCCEEECSC
T ss_pred             cCCCcCcCCCc-------------hhCcChhhCcCCC
Confidence            88888888741             2478888888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=2e-15  Score=135.98  Aligned_cols=170  Identities=19%  Similarity=0.190  Sum_probs=117.7

Q ss_pred             eEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccc
Q 037465           63 VRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PEN  141 (432)
Q Consensus        63 i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~  141 (432)
                      .+.+++.++.+..+|..+.  +.++.|++++|.+     .+. .+..+..+++|++|++++         +.+..+ +..
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~   78 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGL-----ATL-SDATFRGLTKLTWLNLDY---------NQLQTLSAGV   78 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCC-----CCC-CTTTTTTCTTCCEEECTT---------SCCCCCCTTT
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCc-----Ccc-CHhHhcCcccCCEEECCC---------CcCCccCHhH
Confidence            4457777888887777664  5788888888843     332 444578888888888888         556666 445


Q ss_pred             ccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      +..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|......+..++.+++|
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            7788888888888888887764 46788888888888887 5555544 5678888888888885443333457778888


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG  255 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (432)
                      ++|++.++....     .....+..+++|+.+++.+
T Consensus       158 ~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          158 QTLSLSTNQLQS-----VPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CEEECCSSCCSC-----CCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCc-----cCHHHHhCCCCCCEEEeeC
Confidence            888887765542     1223344555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=4.8e-15  Score=128.31  Aligned_cols=150  Identities=17%  Similarity=0.165  Sum_probs=104.8

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-c
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-I  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-l  138 (432)
                      ..+++.+++.++.+..++ .+..+++|++|++++|.+.     .  ++ .+..+++|++|++++         +.++. .
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-----~--~~-~l~~l~~L~~L~l~~---------n~l~~~~  104 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-----N--YN-PISGLSNLERLRIMG---------KDVTSDK  104 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-----C--CG-GGTTCTTCCEEEEEC---------TTCBGGG
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-----c--ch-hhhcCCCCCEEEeEC---------CccCccc
Confidence            456777888888777766 5777888888888887432     1  23 367788888888887         44544 4


Q ss_pred             CccccCCccccEEEeCCccccc-cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccc
Q 037465          139 PENVGKLIHLKYLNLSGLCIKR-LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLT  217 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~  217 (432)
                      |..+..+++|++|++++|.+.. .|..+..+++|++|++++|..+..+| .+..+++|+.|++++|.. ..++ .+..++
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~  181 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFP  181 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCS
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCC
Confidence            6677778888888888888764 56677788888888888876566665 577788888888888744 3344 566777


Q ss_pred             ccccccceEeccc
Q 037465          218 SLRTLGKFVVGGG  230 (432)
Q Consensus       218 ~L~~L~l~~~~~~  230 (432)
                      +|++|++.++...
T Consensus       182 ~L~~L~l~~N~i~  194 (197)
T 4ezg_A          182 KLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEEECBC---
T ss_pred             CCCEEEeeCcccC
Confidence            7777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.62  E-value=4.1e-15  Score=136.95  Aligned_cols=170  Identities=22%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR  160 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~  160 (432)
                      ..+++|++|++++|.++.       ++. +..+++|++|++++         +.++.++. +..+++|++|++++|.+..
T Consensus        43 ~~l~~L~~L~l~~~~i~~-------~~~-~~~l~~L~~L~L~~---------n~l~~~~~-l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS-------VQG-IQYLPNVTKLFLNG---------NKLTDIKP-LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCS---------SCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             hhcCcccEEEccCCCccc-------Chh-HhcCCCCCEEEccC---------CccCCCcc-cccCCCCCEEECCCCcCCC
Confidence            345555555555553321       122 44555555555555         34444443 5555555555555555555


Q ss_pred             cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcc
Q 037465          161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE  240 (432)
Q Consensus       161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  240 (432)
                      +| .+..+++|++|++++|. +..+ ..+..+++|+.|++++|.... + ..++.+++|++|++.++....      .. 
T Consensus       105 ~~-~l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~------~~-  172 (291)
T 1h6t_A          105 LS-SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD------IV-  172 (291)
T ss_dssp             GG-GGTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC------CG-
T ss_pred             Ch-hhccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc------ch-
Confidence            44 25555555555555554 3333 234555555555555553222 2 334555555555555554332      11 


Q ss_pred             ccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccc
Q 037465          241 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRV  286 (432)
Q Consensus       241 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  286 (432)
                      .+..+++|+.|+++++.- ...     ..+..+++|+.|++++|.+
T Consensus       173 ~l~~l~~L~~L~L~~N~i-~~l-----~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          173 PLAGLTKLQNLYLSKNHI-SDL-----RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             GGTTCTTCCEEECCSSCC-CBC-----GGGTTCTTCSEEEEEEEEE
T ss_pred             hhcCCCccCEEECCCCcC-CCC-----hhhccCCCCCEEECcCCcc
Confidence            155555666666555321 111     2356677788888877763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=6.6e-15  Score=132.60  Aligned_cols=156  Identities=24%  Similarity=0.288  Sum_probs=131.7

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ...++.|.+.++.+..++. .+.++++|++|++++|.+     .+. .+..+..+++|++|++++         +.++.+
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~   98 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTL-SAGVFDDLTELGTLGLAN---------NQLASL   98 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-----CCC-CTTTTTTCTTCCEEECTT---------SCCCCC
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-----Ccc-CHhHhccCCcCCEEECCC---------Cccccc
Confidence            5689999999999988554 689999999999999954     333 556689999999999999         677777


Q ss_pred             C-ccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCc
Q 037465          139 P-ENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       139 p-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                      | ..+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..
T Consensus        99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  177 (251)
T 3m19_A           99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR  177 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence            5 4578899999999999999988865 6889999999999998 666665 6889999999999999666555557889


Q ss_pred             ccccccccceEecccc
Q 037465          216 LTSLRTLGKFVVGGGV  231 (432)
Q Consensus       216 l~~L~~L~l~~~~~~~  231 (432)
                      +++|+.|++.++....
T Consensus       178 l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          178 LGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTCCEEECCSCCBCT
T ss_pred             CCCCCEEEeeCCceeC
Confidence            9999999999887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.60  E-value=7.1e-15  Score=135.38  Aligned_cols=165  Identities=16%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.+.+.++.+..++ .+..+++|++|++++|.++     +  ++. +..+++|++|++++         +.++.+|
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~-----~--~~~-l~~l~~L~~L~l~~---------n~l~~~~  106 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-----D--IKP-LANLKNLGWLFLDE---------NKVKDLS  106 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCTTCCEEECCS---------SCCCCGG
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC-----C--Ccc-cccCCCCCEEECCC---------CcCCCCh
Confidence            345666666666665543 3556666666666666432     2  222 55666666666666         4455544


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                       .+..+++|++|++++|.+..++ .+..+++|++|++++|. +..+ ..+..+++|+.|++++|... .++. +..+++|
T Consensus       107 -~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L  180 (291)
T 1h6t_A          107 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL  180 (291)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTC
T ss_pred             -hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc-cchh-hcCCCcc
Confidence             2566666666666666666553 45566666666666665 4444 35566666666666666333 2333 5566666


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG  255 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (432)
                      ++|++.++....       ...+..+++|+.|++++
T Consensus       181 ~~L~L~~N~i~~-------l~~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          181 QNLYLSKNHISD-------LRALAGLKNLDVLELFS  209 (291)
T ss_dssp             CEEECCSSCCCB-------CGGGTTCTTCSEEEEEE
T ss_pred             CEEECCCCcCCC-------ChhhccCCCCCEEECcC
Confidence            666666554432       23355566666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=4.5e-15  Score=128.52  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=95.7

Q ss_pred             ccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc
Q 037465           80 FFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK  159 (432)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~  159 (432)
                      ..++++|++|++++|.++      . ++ .+..+++|++|++++         +.+..++ .+..+++|++|++++|.+.
T Consensus        40 ~~~l~~L~~L~l~~n~i~------~-l~-~l~~l~~L~~L~l~~---------n~~~~~~-~l~~l~~L~~L~l~~n~l~  101 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT------D-LT-GIEYAHNIKDLTINN---------IHATNYN-PISGLSNLERLRIMGKDVT  101 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS------C-CT-TGGGCTTCSEEEEES---------CCCSCCG-GGTTCTTCCEEEEECTTCB
T ss_pred             hhhcCCccEEeccCCCcc------C-hH-HHhcCCCCCEEEccC---------CCCCcch-hhhcCCCCCEEEeECCccC
Confidence            366788888888888542      2 33 377788888888888         4454443 6777888888888888877


Q ss_pred             c-cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEeccc
Q 037465          160 R-LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       160 ~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  230 (432)
                      . .|..+..+++|++|++++|......|..++.+++|++|++++|.....+| .+..+++|+.|++.++...
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence            4 56678888888888888887555567778888888888888886455555 4666777777776655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=127.12  Aligned_cols=151  Identities=19%  Similarity=0.122  Sum_probs=123.3

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-ccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~  143 (432)
                      .++++++.+..+|..+.  +.+++|++++|.++     .......|..+++|++|++++         +.++.++. .+.
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~-----~~~~~~~~~~l~~L~~L~L~~---------N~i~~i~~~~~~   78 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFT-----VLEATGIFKKLPQLRKINFSN---------NKITDIEEGAFE   78 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCC-----EECCCCCGGGCTTCCEEECCS---------SCCCEECTTTTT
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCC-----ccCchhhhccCCCCCEEECCC---------CcCCEECHHHhC
Confidence            67888888888887664  45789999999543     322234578999999999999         67877754 789


Q ss_pred             CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL  222 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  222 (432)
                      .+++|++|++++|.+..+++ .+..+++|++|++++|......|..+..+++|+.|++++|......|..+..+++|+.|
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            99999999999999988875 48889999999999998555557778899999999999997766667888999999999


Q ss_pred             cceEecccc
Q 037465          223 GKFVVGGGV  231 (432)
Q Consensus       223 ~l~~~~~~~  231 (432)
                      ++.++....
T Consensus       159 ~L~~N~l~c  167 (220)
T 2v70_A          159 NLLANPFNC  167 (220)
T ss_dssp             ECCSCCEEC
T ss_pred             EecCcCCcC
Confidence            998887654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=1.4e-14  Score=146.36  Aligned_cols=166  Identities=17%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.|.+.++.+..++ .+..+++|+.|++++|.+     .+  ++. +..+++|+.|+|++         +.+..+|
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-----~~--~~~-l~~l~~L~~L~Ls~---------N~l~~l~  103 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-----TD--IKP-LTNLKNLGWLFLDE---------NKIKDLS  103 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-----CC--CGG-GGGCTTCCEEECCS---------SCCCCCT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-----CC--Chh-hccCCCCCEEECcC---------CCCCCCh
Confidence            456777888888777765 577888888888888854     22  233 77888888888888         5566665


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                       .+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|. +..+ ..+..+++|+.|++++|......|  +..+++|
T Consensus       104 -~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L  177 (605)
T 1m9s_A          104 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  177 (605)
T ss_dssp             -TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             -hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence             6777888888888888887765 57788888888888887 5555 467788888888888885544333  7778888


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCC
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGL  256 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  256 (432)
                      +.|++.+|....       +..+..+++|+.|++.++
T Consensus       178 ~~L~Ls~N~i~~-------l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          178 QNLYLSKNHISD-------LRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CEEECCSSCCCB-------CGGGTTCTTCSEEECCSE
T ss_pred             CEEECcCCCCCC-------ChHHccCCCCCEEEccCC
Confidence            888887776542       245677777777777663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=2.6e-14  Score=126.81  Aligned_cols=148  Identities=22%  Similarity=0.282  Sum_probs=113.6

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-ccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~  143 (432)
                      .++..++.+..+|..+.  ++|++|++++|.+     .+. .+..+..+++|++|++++         +.++.+|. .+.
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i-----~~~-~~~~~~~l~~L~~L~L~~---------N~l~~i~~~~~~   85 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQI-----TKL-EPGVFDSLINLKELYLGS---------NQLGALPVGVFD   85 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCC-----CCC-CTTTTTTCTTCCEEECCS---------SCCCCCCTTTTT
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCcc-----Ccc-CHHHhhCccCCcEEECCC---------CCCCCcChhhcc
Confidence            36666777777777654  7889999998854     333 455688889999999988         66777764 457


Q ss_pred             CCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL  222 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  222 (432)
                      .+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|..+..+++|+.|++++|......+..+..+++|+.|
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            888999999999988888754 5788899999999888 66888888888999999999885543333557788888888


Q ss_pred             cceEeccc
Q 037465          223 GKFVVGGG  230 (432)
Q Consensus       223 ~l~~~~~~  230 (432)
                      ++.++...
T Consensus       165 ~l~~N~~~  172 (229)
T 3e6j_A          165 YLFGNPWD  172 (229)
T ss_dssp             ECTTSCBC
T ss_pred             EeeCCCcc
Confidence            88777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.56  E-value=1.9e-14  Score=126.74  Aligned_cols=150  Identities=21%  Similarity=0.190  Sum_probs=118.8

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~  143 (432)
                      .+...++++..+|..+.  ++|+.|++++|.+     .. +.+..|..+++|++|++++         +.+..+ |..+.
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i-----~~-i~~~~~~~l~~L~~L~Ls~---------N~i~~~~~~~~~   77 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTI-----KV-IPPGAFSPYKKLRRIDLSN---------NQISELAPDAFQ   77 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCC-----CE-ECTTSSTTCTTCCEEECCS---------SCCCEECTTTTT
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcC-----CC-cCHhHhhCCCCCCEEECCC---------CcCCCcCHHHhh
Confidence            46777778888887664  6899999999954     22 2444588899999999999         667776 77888


Q ss_pred             CCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTL  222 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  222 (432)
                      .+++|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|+.|++++|......+..+..+++|+.|
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            999999999999999988865 5789999999999998445556678889999999999996555445568888899999


Q ss_pred             cceEecccc
Q 037465          223 GKFVVGGGV  231 (432)
Q Consensus       223 ~l~~~~~~~  231 (432)
                      ++.++....
T Consensus       158 ~L~~N~~~c  166 (220)
T 2v9t_B          158 HLAQNPFIC  166 (220)
T ss_dssp             ECCSSCEEC
T ss_pred             EeCCCCcCC
Confidence            988877653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=2.7e-14  Score=124.68  Aligned_cols=143  Identities=24%  Similarity=0.319  Sum_probs=63.4

Q ss_pred             EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-ccCC
Q 037465           67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-VGKL  145 (432)
Q Consensus        67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~l  145 (432)
                      ...++++..+|..+  .++|++|++++|.+     .. +.+..+..+++|++|++++         +.++.+|.. +..+
T Consensus        13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l-----~~-~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~l   75 (208)
T 2o6s_A           13 ECYSQGRTSVPTGI--PAQTTYLDLETNSL-----KS-LPNGVFDELTSLTQLYLGG---------NKLQSLPNGVFNKL   75 (208)
T ss_dssp             ECCSSCCSSCCSCC--CTTCSEEECCSSCC-----CC-CCTTTTTTCTTCSEEECCS---------SCCCCCCTTTTTTC
T ss_pred             EecCCCccCCCCCC--CCCCcEEEcCCCcc-----Cc-CChhhhcccccCcEEECCC---------CccCccChhhcCCC
Confidence            33344444444333  23455555555532     11 1233344555555555555         334444322 3445


Q ss_pred             ccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465          146 IHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG  223 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  223 (432)
                      ++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|......+..+..+++|++|+
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            5555555555555544432 3455555555555554 3233322 34455555555555533222222244455555555


Q ss_pred             ceEe
Q 037465          224 KFVV  227 (432)
Q Consensus       224 l~~~  227 (432)
                      +.++
T Consensus       155 l~~N  158 (208)
T 2o6s_A          155 LHDN  158 (208)
T ss_dssp             CCSC
T ss_pred             ecCC
Confidence            4444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=1.1e-14  Score=146.99  Aligned_cols=189  Identities=20%  Similarity=0.158  Sum_probs=124.4

Q ss_pred             CcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhccc
Q 037465          114 ACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLM  193 (432)
Q Consensus       114 ~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~  193 (432)
                      ..+..+.++.         ..+..++ .+..+++|+.|++++|.+..+| .+..+++|+.|+|++|. +..++. +..++
T Consensus        21 ~~l~~l~l~~---------~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~   87 (605)
T 1m9s_A           21 AETIKDNLKK---------KSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLK   87 (605)
T ss_dssp             HHHHHHHTTC---------SCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCT
T ss_pred             HHHHHHhccC---------CCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCC
Confidence            3344555655         4455543 3567888999999999988887 68889999999999998 666665 88899


Q ss_pred             ccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccc
Q 037465          194 NMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQ  273 (432)
Q Consensus       194 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~  273 (432)
                      +|+.|++++|.. ..+| .+..+++|+.|++.++....       +..+..+++|+.|+++++.- ...     ..+..+
T Consensus        88 ~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-------l~~l~~l~~L~~L~Ls~N~l-~~l-----~~l~~l  152 (605)
T 1m9s_A           88 NLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNGISD-------INGLVHLPQLESLYLGNNKI-TDI-----TVLSRL  152 (605)
T ss_dssp             TCCEEECCSSCC-CCCT-TSTTCTTCCEEECTTSCCCC-------CGGGGGCTTCSEEECCSSCC-CCC-----GGGGSC
T ss_pred             CCCEEECcCCCC-CCCh-hhccCCCCCEEEecCCCCCC-------CccccCCCccCEEECCCCcc-CCc-----hhhccc
Confidence            999999999854 4444 57788888888888776542       34566777777777776432 211     345566


Q ss_pred             cCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCC
Q 037465          274 QNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFN  347 (432)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~  347 (432)
                      ++|+.|+|++|.+.+               ... +..+++|+.|+|++|....++ .+..+++|+.|+|++|..
T Consensus       153 ~~L~~L~Ls~N~l~~---------------~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          153 TKLDTLSLEDNQISD---------------IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TTCSEEECCSSCCCC---------------CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             CCCCEEECcCCcCCC---------------chh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence            667777776666211               111 445556666666665555532 345556666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=2e-14  Score=143.62  Aligned_cols=39  Identities=10%  Similarity=-0.095  Sum_probs=29.3

Q ss_pred             CcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC
Q 037465          314 VEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP  352 (432)
Q Consensus       314 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~  352 (432)
                      |+.|++++|....+|.++..+++|+.|++++|...+.+|
T Consensus       209 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            377888877777778877788888888888886555433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=1.4e-13  Score=124.68  Aligned_cols=147  Identities=18%  Similarity=0.177  Sum_probs=112.2

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.|.+.++.+..++ .+..+++|++|++++|.++     +  ++. +..+++|++|++++         +.++.+|
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-----~--~~~-l~~l~~L~~L~L~~---------N~l~~l~  101 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-----D--LSP-LKDLTKLEELSVNR---------NRLKNLN  101 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCSSCCEEECCS---------SCCSCCT
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-----C--Chh-hccCCCCCEEECCC---------CccCCcC
Confidence            567888888888888776 6778888888888888542     2  333 77888888888888         5677776


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ....  ++|++|++++|.+..++ .+..+++|++|++++|. +..++ .+..+++|+.|++++|.....  ..+..+++|
T Consensus       102 ~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L  174 (263)
T 1xeu_A          102 GIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV  174 (263)
T ss_dssp             TCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred             cccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence            4333  88888888888888876 57888888888888887 66665 677888888888888855443  557788888


Q ss_pred             ccccceEecccc
Q 037465          220 RTLGKFVVGGGV  231 (432)
Q Consensus       220 ~~L~l~~~~~~~  231 (432)
                      +.|++.++....
T Consensus       175 ~~L~l~~N~~~~  186 (263)
T 1xeu_A          175 NWIDLTGQKCVN  186 (263)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CEEeCCCCcccC
Confidence            888888887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.51  E-value=7.6e-14  Score=121.80  Aligned_cols=159  Identities=22%  Similarity=0.322  Sum_probs=127.3

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .++++.|++.++.+..++. .+.++++|++|++++|++     .. +.+..+..+++|++|++++         +.++.+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-----~~-~~~~~~~~l~~L~~L~Ls~---------n~l~~~   91 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-----QS-LPNGVFNKLTSLTYLNLST---------NQLQSL   91 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-----CC-CCTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-----Cc-cChhhcCCCCCcCEEECCC---------CcCCcc
Confidence            5689999999999988766 468999999999999954     32 2555578999999999999         677777


Q ss_pred             Ccc-ccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCc
Q 037465          139 PEN-VGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       139 p~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                      |.. +..+++|++|++++|.+..+|+. +..+++|++|++++|. +..+|.. +..+++|+.|++++|+..       +.
T Consensus        92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~  163 (208)
T 2o6s_A           92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CT  163 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CC
T ss_pred             CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cC
Confidence            654 68999999999999999988864 6889999999999998 5555554 788999999999999543       45


Q ss_pred             ccccccccceEecccccCCCCcCccccccCc
Q 037465          216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQ  246 (432)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~  246 (432)
                      +++|+.|++..+...     +..+..++.++
T Consensus       164 ~~~l~~L~~~~n~~~-----g~ip~~~~~l~  189 (208)
T 2o6s_A          164 CPGIRYLSEWINKHS-----GVVRNSAGSVA  189 (208)
T ss_dssp             TTTTHHHHHHHHHCT-----TTBBCTTSSBC
T ss_pred             CCCHHHHHHHHHhCC-----ceeeccCcccc
Confidence            678888888877655     33444455443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=2.5e-14  Score=129.67  Aligned_cols=138  Identities=20%  Similarity=0.175  Sum_probs=77.2

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKL  145 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l  145 (432)
                      +.+..+.+.+++ .+.++++|++|++++|.++.       ++ .+..+++|++|++++         +.++.++. +..+
T Consensus        24 l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-------l~-~l~~l~~L~~L~L~~---------N~i~~~~~-l~~l   84 (263)
T 1xeu_A           24 QNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-------LA-GMQFFTNLKELHLSH---------NQISDLSP-LKDL   84 (263)
T ss_dssp             HHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-------CT-TGGGCTTCCEEECCS---------SCCCCCGG-GTTC
T ss_pred             HHhcCCCccccc-chhhcCcCcEEECcCCCccc-------ch-HHhhCCCCCEEECCC---------CccCCChh-hccC
Confidence            344445555444 45566666666666664322       22 256666666666666         45555554 6666


Q ss_pred             ccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccce
Q 037465          146 IHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKF  225 (432)
Q Consensus       146 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~  225 (432)
                      ++|++|++++|.+..+|... . ++|++|++++|. +..++ .+..+++|+.|++++|.. ..++ .++.+++|+.|++.
T Consensus        85 ~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLH  158 (263)
T ss_dssp             SSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECT
T ss_pred             CCCCEEECCCCccCCcCccc-c-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECC
Confidence            66666666666666665322 2 666666666665 44443 456666666666666632 2232 34455555555554


Q ss_pred             Eec
Q 037465          226 VVG  228 (432)
Q Consensus       226 ~~~  228 (432)
                      ++.
T Consensus       159 ~N~  161 (263)
T 1xeu_A          159 GNE  161 (263)
T ss_dssp             TSC
T ss_pred             CCc
Confidence            443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=1.4e-13  Score=137.54  Aligned_cols=135  Identities=24%  Similarity=0.253  Sum_probs=105.2

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+++.|++.++.+..+|..+.  ++|++|++++|.++      . +|   ..+++|++|++++         +.++.+|.
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~------~-ip---~~l~~L~~L~Ls~---------N~l~~ip~  117 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI------S-LP---ELPASLEYLDACD---------NRLSTLPE  117 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS------C-CC---CCCTTCCEEECCS---------SCCSCCCC
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc------c-cc---cccCCCCEEEccC---------CCCCCcch
Confidence            368889999888888887663  78999999998543      2 33   3478899999998         66777877


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                       +..  +|++|++++|.++.+|.   .+++|++|++++|. +..+|.   .+++|+.|++++|.. ..+|. +.  ++|+
T Consensus       118 -l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~  183 (571)
T 3cvr_A          118 -LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLE  183 (571)
T ss_dssp             -CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCC
T ss_pred             -hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCC
Confidence             654  89999999999888886   67889999999888 666776   577899999998854 44777 55  7888


Q ss_pred             cccceEeccc
Q 037465          221 TLGKFVVGGG  230 (432)
Q Consensus       221 ~L~l~~~~~~  230 (432)
                      .|++.+|...
T Consensus       184 ~L~Ls~N~L~  193 (571)
T 3cvr_A          184 ALDVSTNLLE  193 (571)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECcCCCCC
Confidence            8888877655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=7.5e-14  Score=117.47  Aligned_cols=130  Identities=22%  Similarity=0.205  Sum_probs=69.5

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc-cc
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR-LP  162 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp  162 (432)
                      ++|++|++++|.++.    +. ++..+..+++|++|++++         +.++.+ ..+..+++|++|++++|.+.. +|
T Consensus        24 ~~L~~L~l~~n~l~~----~~-i~~~~~~l~~L~~L~l~~---------n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           24 AAVRELVLDNCKSND----GK-IEGLTAEFVNLEFLSLIN---------VGLISV-SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TSCSEEECCSCBCBT----TB-CSSCCGGGGGCCEEEEES---------SCCCCC-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             ccCCEEECCCCCCCh----hh-HHHHHHhCCCCCEEeCcC---------CCCCCh-hhhccCCCCCEEECcCCcCchHHH
Confidence            455666666663211    12 333355556666666666         334444 455556666666666666554 44


Q ss_pred             hhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccCCc----cCCcccccccccceEeccc
Q 037465          163 ETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYMPI----GISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       163 ~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~~~~~~  230 (432)
                      ..+..+++|++|++++|. +..+|  ..+..+++|+.|++++|... ..|.    .+..+++|++|++..+...
T Consensus        89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence            444556666666666665 44443  44555666666666666332 2332    4555666666666655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=1.2e-13  Score=116.25  Aligned_cols=133  Identities=27%  Similarity=0.242  Sum_probs=107.1

Q ss_pred             CCceEEEEeecCCCC--CCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGA--PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      .++++.|.+.++.+.  .+|..+..+++|++|++++|.++.       + ..+..+++|++|++++         +.+..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-------~-~~~~~l~~L~~L~Ls~---------N~l~~   85 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-------V-SNLPKLPKLKKLELSE---------NRIFG   85 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-------C-SSCCCCSSCCEEEEES---------CCCCS
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-------h-hhhccCCCCCEEECcC---------CcCch
Confidence            577899999999887  688888899999999999996533       2 3478899999999999         55666


Q ss_pred             -cCccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCCh----hhhcccccceEEcCCCCccccCC
Q 037465          138 -IPENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPA----GIGKLMNMRSLLNDNTRSLKYMP  210 (432)
Q Consensus       138 -lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~l~~~~~~~~~p  210 (432)
                       +|..+..+++|++|++++|.+..+|  ..+..+++|++|++++|. +..+|.    .+..+++|+.|++++|. ...+|
T Consensus        86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A           86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence             6766777999999999999988876  678889999999999998 666665    67889999999999884 34444


Q ss_pred             c
Q 037465          211 I  211 (432)
Q Consensus       211 ~  211 (432)
                      .
T Consensus       164 ~  164 (168)
T 2ell_A          164 D  164 (168)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=8.5e-14  Score=114.62  Aligned_cols=125  Identities=24%  Similarity=0.241  Sum_probs=70.2

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc-cc
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR-LP  162 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp  162 (432)
                      ++|+.|++++|.++.    +. ++..+..+++|++|++++         +.++.+ ..+..+++|++|++++|.+.. +|
T Consensus        17 ~~l~~L~l~~n~l~~----~~-~~~~~~~l~~L~~L~l~~---------n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           17 SDVKELVLDNSRSNE----GK-LEGLTDEFEELEFLSTIN---------VGLTSI-ANLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGCSEEECTTCBCBT----TB-CCSCCTTCTTCCEEECTT---------SCCCCC-TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred             ccCeEEEccCCcCCh----hH-HHHHHhhcCCCcEEECcC---------CCCCCc-hhhhcCCCCCEEECCCCcccchHH
Confidence            456666666663321    12 333456666666666666         344444 455666666666666666655 55


Q ss_pred             hhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCccccCCc----cCCcccccccccce
Q 037465          163 ETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSLKYMPI----GISKLTSLRTLGKF  225 (432)
Q Consensus       163 ~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~l~  225 (432)
                      ..+..+++|++|++++|. +..+|  ..++.+++|++|++++|... ..|.    .++.+++|+.|++.
T Consensus        82 ~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            555556666666666665 43332  45566666666666666333 2332    45556666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.9e-13  Score=115.99  Aligned_cols=133  Identities=23%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccc
Q 037465           79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCI  158 (432)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l  158 (432)
                      .+.++++|++|++++|.++.       ++......++|++|++++         +.++.+ ..+..+++|++|++++|.+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-------i~~~~~~~~~L~~L~Ls~---------N~l~~~-~~l~~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-------IENLGATLDQFDAIDFSD---------NEIRKL-DGFPLLRRLKTLLVNNNRI   76 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-------CCCGGGGTTCCSEEECCS---------SCCCEE-CCCCCCSSCCEEECCSSCC
T ss_pred             hcCCcCCceEEEeeCCCCch-------hHHhhhcCCCCCEEECCC---------CCCCcc-cccccCCCCCEEECCCCcc
Confidence            45667788888888885432       233233344888888888         556666 5677788888888888888


Q ss_pred             cccchhh-hccCCccEEecccccccccCCh--hhhcccccceEEcCCCCccccCCcc----CCcccccccccceEeccc
Q 037465          159 KRLPETL-CELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKYMPIG----ISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       159 ~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~  230 (432)
                      ..+|+.+ ..+++|++|++++|. +..+|.  .+..+++|+.|++++|+. ..+|..    ++.+++|+.|++..+...
T Consensus        77 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           77 CRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8777554 778888888888887 566665  677788888888888854 345553    677788888887776544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=1.2e-13  Score=142.94  Aligned_cols=158  Identities=21%  Similarity=0.215  Sum_probs=86.1

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++++++..+.+...+..+.....|+.+.+....+....+.  .++..+..++.|++|+|++         +.+..+|
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~---------n~l~~l~  240 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSN---------LQIFNIS  240 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTT---------SCCSCCC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCC---------CCCCCCC
Confidence            4567788887777766555544444444444333221111111  2455677788888888888         5677777


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ..+..+++|++|+|++|.+..+|..++.+++|++|+|++|. +..+|..++.+++|++|++++| .+..+|..++.+++|
T Consensus       241 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L  318 (727)
T 4b8c_D          241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL  318 (727)
T ss_dssp             GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred             hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence            77778888888888888888888888888888888888887 5577888888888888888888 445777778888888


Q ss_pred             ccccceEeccc
Q 037465          220 RTLGKFVVGGG  230 (432)
Q Consensus       220 ~~L~l~~~~~~  230 (432)
                      +.|++.+|...
T Consensus       319 ~~L~L~~N~l~  329 (727)
T 4b8c_D          319 QFLGVEGNPLE  329 (727)
T ss_dssp             CCEECTTSCCC
T ss_pred             cEEeCCCCccC
Confidence            88888777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=2.9e-13  Score=128.54  Aligned_cols=148  Identities=20%  Similarity=0.195  Sum_probs=98.3

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhc-cCCcceEEEeCCCCCCCCCCCCcccccC-ccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFS-KLACLRALVISQSSSFSHPGPNLITEIP-ENV  142 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~  142 (432)
                      .++..++.+..+|..+.  +.++.|++++|.+     +.- .+..+. .+++|++|++++         +.+..++ ..+
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l-----~~l-~~~~~~~~l~~L~~L~L~~---------N~i~~i~~~~~   84 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNL-----SRL-RAEWTPTRLTNLHSLLLSH---------NHLNFISSEAF   84 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCC-----CEE-CTTSSSSCCTTCCEEECCS---------SCCCEECTTTT
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCC-----Ccc-ChhhhhhcccccCEEECCC---------CcCCccChhhc
Confidence            46677777777776553  3577788888754     222 333355 778888888887         5666664 457


Q ss_pred             cCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccC----Cccc
Q 037465          143 GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGI----SKLT  217 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~  217 (432)
                      ..+++|++|+|++|.+..++. .+..+++|++|++++|......|..+..+++|+.|++++|. +..+|..+    ..++
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~  163 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLP  163 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CT
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCC
Confidence            778888888888888777764 46777888888888877444445667777888888888774 34455432    4567


Q ss_pred             ccccccceEeccc
Q 037465          218 SLRTLGKFVVGGG  230 (432)
Q Consensus       218 ~L~~L~l~~~~~~  230 (432)
                      +|+.|++.++...
T Consensus       164 ~L~~L~L~~N~l~  176 (361)
T 2xot_A          164 KLMLLDLSSNKLK  176 (361)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             cCCEEECCCCCCC
Confidence            7777777766544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.44  E-value=7.1e-13  Score=117.47  Aligned_cols=132  Identities=22%  Similarity=0.279  Sum_probs=113.7

Q ss_pred             CCceEEEEeecCCCCCC-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPL-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.|.++++.+..+ +..|.++++|++|++++|.+      ..+.+..|..+++|++|++++         +.++.+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l------~~i~~~~~~~l~~L~~L~Ls~---------N~l~~l  103 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------GALPVGVFDSLTQLTVLDLGT---------NQLTVL  103 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCS---------SCCCCC
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC------CCcChhhcccCCCcCEEECCC---------CcCCcc
Confidence            57899999999999986 66789999999999999954      233455689999999999999         678888


Q ss_pred             Ccc-ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC-hhhhcccccceEEcCCCCccc
Q 037465          139 PEN-VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP-AGIGKLMNMRSLLNDNTRSLK  207 (432)
Q Consensus       139 p~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~  207 (432)
                      |.. +..+++|++|++++|.+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|+...
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            654 688999999999999999999999999999999999998 66666 457889999999999996544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=1.5e-13  Score=113.14  Aligned_cols=125  Identities=29%  Similarity=0.294  Sum_probs=107.1

Q ss_pred             CCceEEEEeecCCCC--CCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGA--PLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      .++++.+.+.++.+.  .+|..+..+++|++|++++|.++.       . ..+..+++|++|++++         +.+..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~-~~~~~l~~L~~L~Ls~---------n~i~~   78 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------I-ANLPKLNKLKKLELSD---------NRVSG   78 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-------C-TTCCCCTTCCEEECCS---------SCCCS
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-------c-hhhhcCCCCCEEECCC---------Ccccc
Confidence            567999999999988  588888999999999999996543       2 4488999999999999         56666


Q ss_pred             -cCccccCCccccEEEeCCccccccc--hhhhccCCccEEecccccccccCCh----hhhcccccceEEcCC
Q 037465          138 -IPENVGKLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNLRELPA----GIGKLMNMRSLLNDN  202 (432)
Q Consensus       138 -lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~l~~  202 (432)
                       +|..+..+++|++|++++|.+..+|  ..+..+++|++|++++|. +..+|.    .+..+++|+.|++++
T Consensus        79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence             7777778999999999999999875  789999999999999998 666664    688899999998863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=4.9e-14  Score=145.73  Aligned_cols=139  Identities=18%  Similarity=0.128  Sum_probs=108.3

Q ss_pred             CCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEe
Q 037465           74 APLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNL  153 (432)
Q Consensus        74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L  153 (432)
                      ...+..+..++.|++|++++|.+     . . ++..+..+++|++|+|++         +.+..+|..++++++|++|+|
T Consensus       214 ~~~~~~~~~l~~L~~L~Ls~n~l-----~-~-l~~~~~~l~~L~~L~Ls~---------N~l~~lp~~~~~l~~L~~L~L  277 (727)
T 4b8c_D          214 VMPKDSKYDDQLWHALDLSNLQI-----F-N-ISANIFKYDFLTRLYLNG---------NSLTELPAEIKNLSNLRVLDL  277 (727)
T ss_dssp             --------CCCCCCEEECTTSCC-----S-C-CCGGGGGCCSCSCCBCTT---------SCCSCCCGGGGGGTTCCEEEC
T ss_pred             ecChhhhccCCCCcEEECCCCCC-----C-C-CChhhcCCCCCCEEEeeC---------CcCcccChhhhCCCCCCEEeC
Confidence            33466788999999999999964     2 3 444466899999999999         678899999999999999999


Q ss_pred             CCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccc-cccccceEecc
Q 037465          154 SGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTS-LRTLGKFVVGG  229 (432)
Q Consensus       154 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~  229 (432)
                      ++|.+..+|..++.+++|++|+|++|. +..+|..++.+++|+.|++++|...+..|..+..+.. +..+++.++..
T Consensus       278 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          278 SHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             TTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            999999999999999999999999998 7799999999999999999999877776665544322 22344555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.41  E-value=8.4e-13  Score=116.20  Aligned_cols=125  Identities=20%  Similarity=0.254  Sum_probs=88.0

Q ss_pred             cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCcccccc-chh
Q 037465           87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRL-PET  164 (432)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~  164 (432)
                      +.++.+++.++     .  +|..+.  ++|+.|++++         +.++.++. .+..+++|++|++++|.+..+ |..
T Consensus        14 ~~v~c~~~~l~-----~--iP~~l~--~~l~~L~l~~---------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~   75 (220)
T 2v9t_B           14 NIVDCRGKGLT-----E--IPTNLP--ETITEIRLEQ---------NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA   75 (220)
T ss_dssp             TEEECTTSCCS-----S--CCSSCC--TTCCEEECCS---------SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CEEEcCCCCcC-----c--CCCccC--cCCCEEECCC---------CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence            56777776432     1  232222  5788888888         66777754 677788888888888887766 567


Q ss_pred             hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCcccccccccceEeccc
Q 037465          165 LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       165 i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  230 (432)
                      +..+++|++|++++|. +..+|.. +..+++|+.|++++|......|..+..+++|++|++.++...
T Consensus        76 ~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             TTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            7888888888888887 5566655 467888888888888655555666777777888777766554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=8.5e-13  Score=116.18  Aligned_cols=134  Identities=15%  Similarity=0.104  Sum_probs=112.4

Q ss_pred             CCceEEEEeecCCCCCCC--ccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGAPLP--MSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      ...++.|.++++.+..++  ..|.++++|++|++++|.+     +.. .+..|..+++|++|++++         +.++.
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-----~~i-~~~~~~~l~~L~~L~Ls~---------N~l~~   95 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-----TDI-EEGAFEGASGVNEILLTS---------NRLEN   95 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-----CEE-CTTTTTTCTTCCEEECCS---------SCCCC
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-----CEE-CHHHhCCCCCCCEEECCC---------CccCc
Confidence            456789999999998863  3488999999999999954     332 455689999999999999         67777


Q ss_pred             cCc-cccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcccc
Q 037465          138 IPE-NVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKY  208 (432)
Q Consensus       138 lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~  208 (432)
                      ++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|......|..+..+++|+.|++++|+....
T Consensus        96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            754 588999999999999999977 56789999999999999985455578899999999999999976543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=7.8e-13  Score=112.13  Aligned_cols=127  Identities=21%  Similarity=0.162  Sum_probs=108.7

Q ss_pred             CCceEEEEeecCCCCCCCccccccC-cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFD-RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ..+++.|.+.++.+..++. +..+. +|++|++++|.++.       + ..+..+++|++|++++         +.++.+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-------~-~~l~~l~~L~~L~Ls~---------N~l~~~   79 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-------L-DGFPLLRRLKTLLVNN---------NRICRI   79 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-------E-CCCCCCSSCCEEECCS---------SCCCEE
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-------c-cccccCCCCCEEECCC---------Cccccc
Confidence            6789999999999998755 45554 99999999996543       2 3488999999999999         778888


Q ss_pred             Cccc-cCCccccEEEeCCccccccch--hhhccCCccEEecccccccccCChh----hhcccccceEEcCCCCc
Q 037465          139 PENV-GKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPAG----IGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       139 p~~~-~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~  205 (432)
                      |..+ ..+++|++|++++|.+..+|.  .+..+++|++|++++|. +..+|..    +..+++|+.|++++|..
T Consensus        80 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            7655 889999999999999999987  78999999999999998 6677775    88999999999998854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.39  E-value=4.6e-13  Score=127.21  Aligned_cols=154  Identities=23%  Similarity=0.199  Sum_probs=124.3

Q ss_pred             CCceEEEEeecCCCCCCCcc-cc-ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGAPLPMS-FF-EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      ...++.|+++++.+..++.. +. ++++|++|++++|.+     .. +.+..|..+++|++|+|++         +.++.
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-----~~-i~~~~~~~l~~L~~L~Ls~---------N~l~~  102 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-----NF-ISSEAFVPVPNLRYLDLSS---------NHLHT  102 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-----CE-ECTTTTTTCTTCCEEECCS---------SCCCE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-----Cc-cChhhccCCCCCCEEECCC---------CcCCc
Confidence            56788999999999986654 55 899999999999965     32 2445689999999999999         67888


Q ss_pred             cCc-cccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccCChhh----hcccccceEEcCCCCccccCC-
Q 037465          138 IPE-NVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLRELPAGI----GKLMNMRSLLNDNTRSLKYMP-  210 (432)
Q Consensus       138 lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i----~~l~~L~~L~l~~~~~~~~~p-  210 (432)
                      ++. .+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..+    ..+++|+.|++++|... .+| 
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~  180 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL  180 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-CCCH
T ss_pred             CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCH
Confidence            754 588999999999999999877 4678999999999999998 77788765    57999999999999554 455 


Q ss_pred             ccCCcccc--cccccceEeccc
Q 037465          211 IGISKLTS--LRTLGKFVVGGG  230 (432)
Q Consensus       211 ~~l~~l~~--L~~L~l~~~~~~  230 (432)
                      ..+..+++  ++.|++.+|...
T Consensus       181 ~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          181 TDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHhhhccHhhcceEEecCCCcc
Confidence            45666666  478888887655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=1.4e-12  Score=112.15  Aligned_cols=130  Identities=21%  Similarity=0.205  Sum_probs=103.3

Q ss_pred             EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465           64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV  142 (432)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~  142 (432)
                      +.++++++.+..+|..+..  +|++|++++|.+     ........+..+++|++|++++         +.++.+ |..+
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i-----~~~~~~~~~~~l~~L~~L~Ls~---------N~l~~~~~~~~   74 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNEL-----GRISSDGLFGRLPHLVKLELKR---------NQLTGIEPNAF   74 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCC-----CSBCCSCSGGGCTTCCEEECCS---------SCCCCBCTTTT
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcC-----CccCCccccccCCCCCEEECCC---------CCCCCcCHhHc
Confidence            4678888888888876644  899999999954     2321122478899999999999         667776 7788


Q ss_pred             cCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccC
Q 037465          143 GKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYM  209 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~  209 (432)
                      ..+++|++|++++|.+..+++ .+..+++|++|++++|......|..+..+++|++|++++|+.....
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            899999999999999887765 4788999999999999855666778888999999999998665443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=3.7e-14  Score=122.83  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=84.1

Q ss_pred             eEEEEeecC--CCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           63 VRHLGLNFE--GGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        63 i~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      ++...+.+.  .++.+|..+.++++|++|++++|.++     .  ++ .+..+++|++|++++         +.++.+|.
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-----~--l~-~~~~l~~L~~L~l~~---------n~l~~l~~   87 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-----K--IS-SLSGMENLRILSLGR---------NLIKKIEN   87 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-----C--CC-CHHHHTTCCEEEEEE---------EEECSCSS
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-----c--cc-ccccCCCCCEEECCC---------CCcccccc
Confidence            334444433  44555557777777777777777442     2  33 467777777777777         56667776


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCCh--hhhcccccceEEcCCCCcccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKY  208 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~  208 (432)
                      .+..+++|++|++++|.+..+| .+..+++|++|++++|. +..++.  .+..+++|++|++++|+....
T Consensus        88 ~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           88 LDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             hhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            6666777777777777777766 57777777777777776 444443  566777777777777754433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=1.3e-11  Score=106.24  Aligned_cols=123  Identities=18%  Similarity=0.227  Sum_probs=94.5

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-cccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~  143 (432)
                      .+++.++.+..+|..+.  ++|++|++++|.++      . ++..+..+++|++|++++         +.++.++ ..|.
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~------~-ip~~~~~l~~L~~L~Ls~---------N~i~~i~~~~f~   75 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT------L-VPKELSNYKHLTLIDLSN---------NRISTLSNQSFS   75 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC------S-CCGGGGGCTTCCEEECCS---------SCCCCCCTTTTT
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc------h-hHHHhhcccCCCEEECCC---------CcCCEeCHhHcc
Confidence            46777778887777653  57889999888542      2 445688888999999988         6677774 4678


Q ss_pred             CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCcc
Q 037465          144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSL  206 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~  206 (432)
                      .+++|++|++++|.+..+++ .+..+++|++|++++|. +..+|. .+..+++|+.|++++|+..
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            88899999999988887765 57888889999998888 556655 4677888888888888543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=3.4e-12  Score=109.73  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc--ccCCccccEEEeCCcccccc-ch
Q 037465           87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN--VGKLIHLKYLNLSGLCIKRL-PE  163 (432)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~l-p~  163 (432)
                      ++++++++.++      . +|..+.  .+|++|++++         +.++.++..  +..+++|++|++++|.+..+ |.
T Consensus        11 ~~l~~s~~~l~------~-ip~~~~--~~l~~L~l~~---------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   72 (192)
T 1w8a_A           11 TTVDCTGRGLK------E-IPRDIP--LHTTELLLND---------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TEEECTTSCCS------S-CCSCCC--TTCSEEECCS---------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CEEEcCCCCcC------c-CccCCC--CCCCEEECCC---------CcCCccCCccccccCCCCCEEECCCCCCCCcCHh
Confidence            68888888542      2 333232  3889999998         677777653  78899999999999998876 56


Q ss_pred             hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEeccc
Q 037465          164 TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       164 ~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  230 (432)
                      .+..+++|++|++++|......+..+..+++|+.|++++|......|..+..+++|++|++.++...
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            7888999999999998844444555788899999999999777777778888889999888877665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=8.4e-12  Score=125.17  Aligned_cols=160  Identities=18%  Similarity=0.147  Sum_probs=115.8

Q ss_pred             CccccccCcccEEE-EecCCcCcc---CccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEE
Q 037465           77 PMSFFEFDRLRSLL-IYDESLSNL---SLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLN  152 (432)
Q Consensus        77 ~~~~~~~~~L~~L~-l~~~~~~~~---~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~  152 (432)
                      |..+.++++|+.|+ ++.+.+...   .+....+.. + ....|++|++++         +.++.+|. ++.+++|++|+
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~-l-~~~~L~~L~Ls~---------n~l~~lp~-~~~l~~L~~L~  469 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-M-EYADVRVLHLAH---------KDLTVLCH-LEQLLLVTHLD  469 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-H-HHTTCSEEECTT---------SCCSSCCC-GGGGTTCCEEE
T ss_pred             HHHHHHHHhcccCcchhhcccchhhhhhhhcccccc-c-CccCceEEEecC---------CCCCCCcC-ccccccCcEee
Confidence            34566788888888 555532110   000000111 1 123589999999         67888886 99999999999


Q ss_pred             eCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccC-CccCCcccccccccceEecccc
Q 037465          153 LSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYM-PIGISKLTSLRTLGKFVVGGGV  231 (432)
Q Consensus       153 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~  231 (432)
                      +++|.+..+|..++.+++|++|++++|. +..+| .++.+++|+.|++++|...... |..++.+++|+.|++.+|....
T Consensus       470 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          470 LSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            9999999999999999999999999998 66688 8899999999999999665554 8889999999999999888764


Q ss_pred             cCCCCcCccccccCccCCcee
Q 037465          232 DGSSTCRLESLKNLQLLRECG  252 (432)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~~L~  252 (432)
                      ..  ......+..+++|+.|+
T Consensus       548 ~~--~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          548 EE--GIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SS--SCTTHHHHHCTTCSEEE
T ss_pred             Cc--cHHHHHHHHCcccCccC
Confidence            11  11112234477777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=4.9e-14  Score=122.03  Aligned_cols=111  Identities=24%  Similarity=0.247  Sum_probs=83.0

Q ss_pred             hhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC
Q 037465          107 PELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP  186 (432)
Q Consensus       107 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp  186 (432)
                      +..+..+++|++|++++         +.++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++|. +..+|
T Consensus        41 ~~~~~~l~~L~~L~ls~---------n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~  109 (198)
T 1ds9_A           41 DATLSTLKACKHLALST---------NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS  109 (198)
T ss_dssp             HHHHHHTTTCSEEECSE---------EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred             hHHHhcCCCCCEEECCC---------CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC
Confidence            33578888888888888         6677777 7778888888888888888888777777888888888887 55565


Q ss_pred             hhhhcccccceEEcCCCCccccCC--ccCCcccccccccceEeccc
Q 037465          187 AGIGKLMNMRSLLNDNTRSLKYMP--IGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       187 ~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~  230 (432)
                       .+..+++|+.|++++|.. ..++  ..+..+++|++|++.++...
T Consensus       110 -~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          110 -GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             -ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccc
Confidence             577788888888888743 3333  24667777777777776554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=2.2e-11  Score=103.14  Aligned_cols=126  Identities=23%  Similarity=0.342  Sum_probs=97.3

Q ss_pred             EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-c
Q 037465           64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-V  142 (432)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~  142 (432)
                      +.+.+.++++..+|..+.  ++|++|++++|.+     .+ +.+..+..+++|++|++++         +.++.+|.. +
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l-----~~-~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~   72 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKL-----QS-LPHGVFDKLTQLTKLSLSQ---------NQIQSLPDGVF   72 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCC-----CC-CCTTTTTTCTTCSEEECCS---------SCCCCCCTTTT
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcc-----cE-eCHHHhcCcccccEEECCC---------CcceEeChhHc
Confidence            356777777777776543  6899999999854     32 2455578899999999998         667777554 6


Q ss_pred             cCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccc
Q 037465          143 GKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLK  207 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~  207 (432)
                      ..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|+...
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            7899999999999998888764 6788999999999987 5566665 4678899999999886544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.24  E-value=3.3e-11  Score=103.57  Aligned_cols=125  Identities=19%  Similarity=0.197  Sum_probs=86.6

Q ss_pred             cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccch-hh
Q 037465           87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPE-TL  165 (432)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i  165 (432)
                      ++++++++.++      . +|..+  .++|++|++++         +.++.+|..+..+++|++|++++|.+..++. .+
T Consensus        13 ~~l~~~~~~l~------~-ip~~~--~~~l~~L~L~~---------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A           13 TVVRCSNKGLK------V-LPKGI--PRDVTELYLDG---------NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             TEEECTTSCCS------S-CCSCC--CTTCCEEECCS---------SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CEEEcCCCCCC------c-CCCCC--CCCCCEEECCC---------CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence            56777777442      2 22222  25788888888         6677777778888888888888888877764 57


Q ss_pred             hccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccCCcccccccccceEeccc
Q 037465          166 CELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       166 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~  230 (432)
                      ..+++|++|++++|......|..+..+++|+.|++++|... .+| ..+..+++|+.|++.++...
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            78888888888888733333445777888888888888544 444 34677777888877776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=2.1e-11  Score=122.31  Aligned_cols=119  Identities=18%  Similarity=0.149  Sum_probs=89.0

Q ss_pred             cccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchh
Q 037465           85 RLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPET  164 (432)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~  164 (432)
                      .|++|++++|.++     +  +|. +..+++|++|++++         +.++.+|..++.+++|++|++++|.++.+| .
T Consensus       442 ~L~~L~Ls~n~l~-----~--lp~-~~~l~~L~~L~Ls~---------N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~  503 (567)
T 1dce_A          442 DVRVLHLAHKDLT-----V--LCH-LEQLLLVTHLDLSH---------NRLRALPPALAALRCLEVLQASDNALENVD-G  503 (567)
T ss_dssp             TCSEEECTTSCCS-----S--CCC-GGGGTTCCEEECCS---------SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred             CceEEEecCCCCC-----C--CcC-ccccccCcEeecCc---------ccccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence            4788888888542     2  444 78888888888888         667788888888888888888888888887 7


Q ss_pred             hhccCCccEEecccccccccC--ChhhhcccccceEEcCCCCccccCCccC----Cccccccccc
Q 037465          165 LCELYNLQKLDIRWCRNLREL--PAGIGKLMNMRSLLNDNTRSLKYMPIGI----SKLTSLRTLG  223 (432)
Q Consensus       165 i~~l~~L~~L~l~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~~L~~L~  223 (432)
                      ++.+++|++|++++|. +..+  |..++.+++|+.|++++|+..+ .|..+    ..+++|+.|+
T Consensus       504 l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          504 VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccC
Confidence            8888888888888887 4444  7888888888888888885433 33332    2366777664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.13  E-value=4.1e-11  Score=112.21  Aligned_cols=265  Identities=11%  Similarity=0.080  Sum_probs=130.8

Q ss_pred             cCcccEEEEecCCcCccCccCCcchhhhcc-CCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc
Q 037465           83 FDRLRSLLIYDESLSNLSLNGSILPELFSK-LACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL  161 (432)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l  161 (432)
                      +.+++.|.++++-      ....+.. +.. +++|++|+|++         +.+..+...-+.++.++.+.+..+.   +
T Consensus        24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~---------n~i~~~~~~~~~~~~~~~~~~~~~~---I   84 (329)
T 3sb4_A           24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISN---------AEIKMYSGKAGTYPNGKFYIYMANF---V   84 (329)
T ss_dssp             HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEE---------EEECCEEESSSSSGGGCCEEECTTE---E
T ss_pred             hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCc---------ceeEEecCccccccccccccccccc---c
Confidence            5677888887751      1111222 333 77788888888         5555221112223334555555543   3


Q ss_pred             ch-hhhc--------cCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCccCCcccccccccceEecccc
Q 037465          162 PE-TLCE--------LYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGV  231 (432)
Q Consensus       162 p~-~i~~--------l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~  231 (432)
                      |. .+..        +++|+.+++.+ . +..++. .+..|++|+.+++.++.....-+..+..+.++..+.........
T Consensus        85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~  162 (329)
T 3sb4_A           85 PAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR  162 (329)
T ss_dssp             CTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred             CHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence            32 3445        78888888877 4 555544 36678888888888775444334556666666555443311100


Q ss_pred             cCCCCcCccccccCccCC-ceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCC
Q 037465          232 DGSSTCRLESLKNLQLLR-ECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQP  310 (432)
Q Consensus       232 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (432)
                       .........+..+..|+ .+.+....   .........-....+++.+.+.+.-              ...........
T Consensus       163 -~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l--------------~~~~~~~l~~~  224 (329)
T 3sb4_A          163 -FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL--------------DNADFKLIRDY  224 (329)
T ss_dssp             -TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC--------------CHHHHHHHHHH
T ss_pred             -ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee--------------cHHHHHHHHHh
Confidence             00011122233444454 23333321   1222222222234455555555442              11111111112


Q ss_pred             CCCCcEEEEeeeCCCCCChh-hhccCCCcEEEEeCCCCCCCCC--CCCCcc-cc-eEeccccccccccCccccCCCCCCC
Q 037465          311 PVNVEELWIVYYGGNIFPKW-LTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LE-KLTLYNLKSVKRVGNEFLGIEESSE  385 (432)
Q Consensus       311 ~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~-~L~l~~c~~l~~~~~~~~~~~~~~~  385 (432)
                      +++|+++++.++....+|.. +.++++|+.|++.++  +..++  .+..++ |+ .+++.+  .++.++...+.      
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~------  294 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM------  294 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT------
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh------
Confidence            46666666666555554443 336666666666665  33333  355566 66 666665  46666554443      


Q ss_pred             CCCCCCCCCcceEEEe
Q 037465          386 DDPSSSSSSSSELSIE  401 (432)
Q Consensus       386 ~~~~~~~~~L~~L~i~  401 (432)
                           .+++|+.+.+.
T Consensus       295 -----~c~~L~~l~l~  305 (329)
T 3sb4_A          295 -----GCDNLRYVLAT  305 (329)
T ss_dssp             -----TCTTEEEEEEC
T ss_pred             -----CCccCCEEEeC
Confidence                 25566666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.12  E-value=2.8e-10  Score=96.26  Aligned_cols=125  Identities=24%  Similarity=0.300  Sum_probs=94.8

Q ss_pred             ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccchh
Q 037465           86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPET  164 (432)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~  164 (432)
                      .+.++++++.+.     .  ++.  ...++|++|++++         +.++.+|. .+..+++|++|++++|.+..+|..
T Consensus         9 ~~~l~~~~~~l~-----~--~p~--~~~~~l~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (177)
T 2o6r_A            9 GTEIRCNSKGLT-----S--VPT--GIPSSATRLELES---------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG   70 (177)
T ss_dssp             TTEEECCSSCCS-----S--CCT--TCCTTCSEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CCEEEecCCCCc-----c--CCC--CCCCCCcEEEeCC---------CcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence            467888887542     2  222  2236899999999         66777754 468899999999999999888764


Q ss_pred             -hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCCcc-CCcccccccccceEeccc
Q 037465          165 -LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMPIG-ISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       165 -i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~  230 (432)
                       +..+++|++|++++|. +..+|. .+..+++|+.|++++|... .+|.. +..+++|++|++.++...
T Consensus        71 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           71 VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence             6889999999999998 555554 4678999999999999554 55544 577889999998877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=1.8e-10  Score=97.21  Aligned_cols=70  Identities=24%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             Cccccc-CccccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCChh-hhcccccceEEcCCC
Q 037465          133 NLITEI-PENVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNT  203 (432)
Q Consensus       133 ~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~  203 (432)
                      +.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|
T Consensus        43 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCC
Confidence            334443 33444455555555555555544433 2445555555555544 3333332 444555555555555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.12  E-value=1.3e-10  Score=108.65  Aligned_cols=243  Identities=14%  Similarity=0.114  Sum_probs=143.5

Q ss_pred             cCCcceEEEeCCCCCCCCCCCCcc-cccCccccC-CccccEEEeCCccccccchhhhccCCccEEecccccccccCCh-h
Q 037465          112 KLACLRALVISQSSSFSHPGPNLI-TEIPENVGK-LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPA-G  188 (432)
Q Consensus       112 ~l~~L~~L~L~~~~~~~~~~~~~~-~~lp~~~~~-l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~  188 (432)
                      .+.+++.|.++++         .- .++ ..+.. +++|++|+|++|.+......-+.++.++.+.+..+    .+|. .
T Consensus        23 ~~~~l~~L~l~g~---------i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~a   88 (329)
T 3sb4_A           23 EANSITHLTLTGK---------LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYA   88 (329)
T ss_dssp             HHHHCSEEEEEEE---------ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTT
T ss_pred             hhCceeEEEEecc---------ccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHH
Confidence            3667888988872         21 111 22333 78899999999997722111122233444444443    2332 3


Q ss_pred             hhc--------ccccceEEcCCCCccccCC-ccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCC
Q 037465          189 IGK--------LMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV  259 (432)
Q Consensus       189 i~~--------l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (432)
                      +..        +++|+.|++.+  .+..++ .++..|++|+.+++..+....     .....+..+.++..+........
T Consensus        89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~-----i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPN-----LLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             TEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCE-----ECTTSSCTTTCEEEECTTCTHHH
T ss_pred             hcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccc-----cchhhhcCCCceEEecCcchhhh
Confidence            456        89999999998  344454 568899999999998776542     12233444444444443331000


Q ss_pred             CCchhhhhcccccccCCc-eEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhh-ccCCC
Q 037465          260 SHLDEAERLQLYNQQNLL-CLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLT-SLTNL  337 (432)
Q Consensus       260 ~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L  337 (432)
                      ..........+..+..|+ .+.+....             .........-..+.+++.+.+.+.........+. .+++|
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L  228 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMG-------------KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL  228 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTC-------------CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred             hccccccccccccccccceeEEecCCC-------------cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence            000011123355666776 45554333             0122333333456678888887764432222233 58999


Q ss_pred             cEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcc-eEEEeC
Q 037465          338 RNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSS-ELSIEG  402 (432)
Q Consensus       338 ~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~i~~  402 (432)
                      +.|++.+|. ++.++  .+..++ |+.+++.++  ++.++...+.           .+++|+ .+.+.+
T Consensus       229 ~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-----------~~~~L~~~l~l~~  283 (329)
T 3sb4_A          229 VSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-----------NCGRLAGTLELPA  283 (329)
T ss_dssp             CEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------TCTTCCEEEEECT
T ss_pred             eEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------CChhccEEEEEcc
Confidence            999999984 55555  478899 999999885  8999887654           377888 888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=7.2e-10  Score=93.09  Aligned_cols=98  Identities=22%  Similarity=0.328  Sum_probs=43.8

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc-ccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN-VGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~-~~~  144 (432)
                      ++++++.+..+|..+.  ++|++|++++|.+     .+. .+..|..+++|++|++++         +.++.+|.. +..
T Consensus        14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i-----~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~l~~~~f~~   76 (170)
T 3g39_A           14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQI-----TKL-EPGVFDRLTQLTRLDLDN---------NQLTVLPAGVFDK   76 (170)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCC-----CCC-CTTTTTTCTTCSEEECCS---------SCCCCCCTTTTTT
T ss_pred             EEeCCCCcCccCccCC--CCCcEEEcCCCcC-----Ccc-ChhhhcCcccCCEEECCC---------CCcCccChhhccC
Confidence            4444444444444332  4455555555522     111 233344455555555554         334444332 344


Q ss_pred             CccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465          145 LIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR  180 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~  180 (432)
                      +++|++|++++|.+..+|+ .+..+++|++|++++|.
T Consensus        77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            4555555555555444443 24444445555554444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.00  E-value=9.9e-10  Score=92.59  Aligned_cols=103  Identities=19%  Similarity=0.229  Sum_probs=86.8

Q ss_pred             ceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccc-hhhhccCCccEEecccccccccCChh-hhccc
Q 037465          116 LRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLP-ETLCELYNLQKLDIRWCRNLRELPAG-IGKLM  193 (432)
Q Consensus       116 L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~  193 (432)
                      -+.+++++         +.++.+|..+.  ++|++|++++|.+..++ ..+..+++|++|++++|. +..+|.. +..++
T Consensus        14 ~~~l~~~~---------n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQN---------IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLT   81 (174)
T ss_dssp             SSEEECCS---------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             CcEEEeCC---------CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcc
Confidence            37899998         77899998775  89999999999999884 578999999999999998 7777766 57899


Q ss_pred             ccceEEcCCCCccccCCc-cCCcccccccccceEecccc
Q 037465          194 NMRSLLNDNTRSLKYMPI-GISKLTSLRTLGKFVVGGGV  231 (432)
Q Consensus       194 ~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~  231 (432)
                      +|+.|++++|... .+|. .+..+++|++|++.+|....
T Consensus        82 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence            9999999999554 5554 48899999999999887653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.00  E-value=1e-09  Score=92.14  Aligned_cols=101  Identities=21%  Similarity=0.281  Sum_probs=72.2

Q ss_pred             ccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCCccccEEEeCCccccccchh
Q 037465           86 LRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKLIHLKYLNLSGLCIKRLPET  164 (432)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~  164 (432)
                      .++++++++.++.       +|..+  .++|++|++++         +.++.+ |..+..+++|++|++++|.+..+|+.
T Consensus        11 ~~~l~~s~n~l~~-------ip~~~--~~~l~~L~L~~---------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~   72 (170)
T 3g39_A           11 GTTVDCSGKSLAS-------VPTGI--PTTTQVLYLYD---------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG   72 (170)
T ss_dssp             TTEEECTTSCCSS-------CCSCC--CTTCSEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CCEEEeCCCCcCc-------cCccC--CCCCcEEEcCC---------CcCCccChhhhcCcccCCEEECCCCCcCccChh
Confidence            4678888875422       23222  37788888888         667666 55677888888888888888877764


Q ss_pred             -hhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCc
Q 037465          165 -LCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       165 -i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~  205 (432)
                       +..+++|++|++++|. +..+|. .+..+++|+.|++++|+.
T Consensus        73 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           73 VFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence             4778888888888887 555554 467788888888888754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=1.9e-08  Score=96.36  Aligned_cols=262  Identities=13%  Similarity=0.132  Sum_probs=139.5

Q ss_pred             cCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCcccccc
Q 037465           83 FDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRL  161 (432)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l  161 (432)
                      +..++.+.+-+. +      ..+...+|..+ +|+.+.+..         + ++.++. .|.+ .+|+.+.+.. .++.+
T Consensus       112 ~~~l~~i~ip~~-i------~~I~~~aF~~~-~L~~i~l~~---------~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I  171 (401)
T 4fdw_A          112 LKGYNEIILPNS-V------KSIPKDAFRNS-QIAKVVLNE---------G-LKSIGDMAFFN-STVQEIVFPS-TLEQL  171 (401)
T ss_dssp             CSSCSEEECCTT-C------CEECTTTTTTC-CCSEEECCT---------T-CCEECTTTTTT-CCCCEEECCT-TCCEE
T ss_pred             cCCccEEEECCc-c------CEehHhhcccC-CccEEEeCC---------C-ccEECHHhcCC-CCceEEEeCC-CccEe
Confidence            455555555443 1      12223335554 577777665         2 555533 3344 3577777664 45555


Q ss_pred             c-hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCC-ccCCcccccccccceEecccccCCCCcCc
Q 037465          162 P-ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP-IGISKLTSLRTLGKFVVGGGVDGSSTCRL  239 (432)
Q Consensus       162 p-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  239 (432)
                      + ..+..+.+|+.+++..+. +..++.....+.+|+.+.+..+  +..++ ..+..+++|+.+.+..+-.      .-..
T Consensus       172 ~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~------~I~~  242 (401)
T 4fdw_A          172 KEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVS------TIGQ  242 (401)
T ss_dssp             CSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCC------EECT
T ss_pred             hHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCcc------Cccc
Confidence            4 256666777777776665 5556655555667777776643  33333 4456666777766643211      1122


Q ss_pred             cccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEE
Q 037465          240 ESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWI  319 (432)
Q Consensus       240 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  319 (432)
                      ..+.. .+|+.+.+..  .+.   ......+..|++|+.+.+.++.......         ..-....+..+++|+.+.+
T Consensus       243 ~aF~~-~~L~~i~lp~--~i~---~I~~~aF~~c~~L~~l~l~~~~~~~~~~---------~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          243 EAFRE-SGITTVKLPN--GVT---NIASRAFYYCPELAEVTTYGSTFNDDPE---------AMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             TTTTT-CCCSEEEEET--TCC---EECTTTTTTCTTCCEEEEESSCCCCCTT---------CEECTTTTTTCTTCCEECC
T ss_pred             ccccc-CCccEEEeCC--Ccc---EEChhHhhCCCCCCEEEeCCccccCCcc---------cEECHHHhhCCccCCeEEe
Confidence            22333 4566666532  111   1123456677788888877665211000         0112345667778888877


Q ss_pred             eeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC--CCCCcccceEeccccccccccCccccCCCCCCCCCCCCCCCCcc
Q 037465          320 VYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLPLEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSS  396 (432)
Q Consensus       320 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~  396 (432)
                      ... ...+ ...+.++++|+.+.+..+  ++.+.  .+..+.|+.+++.++. +..++...+..          ...+++
T Consensus       308 ~~~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n~-~~~l~~~~F~~----------~~~~l~  373 (401)
T 4fdw_A          308 PES-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGTT-PPQVFEKVWYG----------FPDDIT  373 (401)
T ss_dssp             CTT-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCSS-CCBCCCSSCCC----------SCTTCC
T ss_pred             CCc-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCCC-CcccccccccC----------CCCCcc
Confidence            642 3323 344557888888888654  33332  2333348888887775 55554433221          234677


Q ss_pred             eEEEeC
Q 037465          397 ELSIEG  402 (432)
Q Consensus       397 ~L~i~~  402 (432)
                      .|.+..
T Consensus       374 ~l~vp~  379 (401)
T 4fdw_A          374 VIRVPA  379 (401)
T ss_dssp             EEEECG
T ss_pred             EEEeCH
Confidence            887765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.91  E-value=3.2e-08  Score=94.80  Aligned_cols=220  Identities=15%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             cCCcceEEEeCCCCCCCCCCCCcccccCc-cccCCccccEEEeCCccccccchh-hhccCCccEEecccccccccCC-hh
Q 037465          112 KLACLRALVISQSSSFSHPGPNLITEIPE-NVGKLIHLKYLNLSGLCIKRLPET-LCELYNLQKLDIRWCRNLRELP-AG  188 (432)
Q Consensus       112 ~l~~L~~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp-~~  188 (432)
                      .+..++.+.+..          .++.++. .|.++ +|+.+.+..+ ++.++.. +.. .+|+.+.+.. . +..++ ..
T Consensus       111 ~~~~l~~i~ip~----------~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~a  175 (401)
T 4fdw_A          111 ILKGYNEIILPN----------SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDI  175 (401)
T ss_dssp             ECSSCSEEECCT----------TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSST
T ss_pred             ecCCccEEEECC----------ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHH
Confidence            345555555553          2444422 33332 4666665543 4444432 223 3566666654 1 33332 23


Q ss_pred             hhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhc
Q 037465          189 IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERL  268 (432)
Q Consensus       189 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  268 (432)
                      +..|++|+.+++..+ .+..++...-.+++|+.+.+..+ ..     .-....+.++++|+.+.+..  .+...   ...
T Consensus       176 F~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~-----~I~~~aF~~~~~L~~l~l~~--~l~~I---~~~  243 (401)
T 4fdw_A          176 FYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LK-----EIGSQAFLKTSQLKTIEIPE--NVSTI---GQE  243 (401)
T ss_dssp             TTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CC-----EECTTTTTTCTTCCCEECCT--TCCEE---CTT
T ss_pred             hhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hh-----eehhhHhhCCCCCCEEecCC--CccCc---ccc
Confidence            455666666666555 23333332222455555555321 11     11233445555566655543  11111   111


Q ss_pred             ccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC------CCChhhhccCCCcEEEE
Q 037465          269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN------IFPKWLTSLTNLRNLYL  342 (432)
Q Consensus       269 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~l~~l~~L~~L~l  342 (432)
                      .+.. .+|+.+.+..+-               ..-....+..+++|+.+.+.++...      .-+..+.++++|+.+.+
T Consensus       244 aF~~-~~L~~i~lp~~i---------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          244 AFRE-SGITTVKLPNGV---------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             TTTT-CCCSEEEEETTC---------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             cccc-CCccEEEeCCCc---------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            2222 456666653221               1111234555666666666554332      11333445666666666


Q ss_pred             eCCCCCCCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465          343 SSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL  378 (432)
Q Consensus       343 ~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~  378 (432)
                      ..+  ++.++  .+..++ |+.+.|...  ++.++...+
T Consensus       308 ~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF  342 (401)
T 4fdw_A          308 PES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF  342 (401)
T ss_dssp             CTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSS
T ss_pred             CCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC
Confidence            532  23222  344555 666666332  555554433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.73  E-value=9.2e-10  Score=104.50  Aligned_cols=60  Identities=17%  Similarity=0.077  Sum_probs=27.6

Q ss_pred             CccccEEEeCCccccc-----cchhhhccCCccEEecccccccc----cCChhhhcccccceEEcCCCC
Q 037465          145 LIHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCRNLR----ELPAGIGKLMNMRSLLNDNTR  204 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~  204 (432)
                      .++|++|++++|.++.     ++..+..+++|++|++++|....    .++..+...++|+.|++++|.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            3455555555555432     33333445555555555554211    122233444455555555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=2.8e-08  Score=93.49  Aligned_cols=100  Identities=21%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             EEeecC-CCCCCCccccccCcccEEEEec-CCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Cccc
Q 037465           66 LGLNFE-GGAPLPMSFFEFDRLRSLLIYD-ESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENV  142 (432)
Q Consensus        66 L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~  142 (432)
                      ++..+. .+..+|. +..+++|+.|++++ |.+     .. +++..|..+++|++|+|++         |.+..+ |..|
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-----~~-~~~~~~~~l~~L~~L~l~~---------N~l~~~~~~~~   76 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHL-----QH-LELRDLRGLGELRNLTIVK---------SGLRFVAPDAF   76 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-----CE-ECGGGSCSCCCCSEEECCS---------SCCCEECTTGG
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-----CC-cChhHhccccCCCEEECCC---------CccceeCHHHh
Confidence            466666 7778888 88888999999986 743     22 2456688899999999998         667776 4467


Q ss_pred             cCCccccEEEeCCccccccchhhhccCCccEEecccccc
Q 037465          143 GKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRN  181 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~  181 (432)
                      .++++|++|+|++|.+..+|+.+.....|+.|++.+|..
T Consensus        77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence            889999999999999888887655555589999988873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=2.6e-08  Score=93.69  Aligned_cols=102  Identities=15%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             EEEEecC-CcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccch-h
Q 037465           88 SLLIYDE-SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPE-T  164 (432)
Q Consensus        88 ~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~  164 (432)
                      .++.+++ .++      . +|. +..+.+|++|+|+++        +.++.+| ..|..+++|++|+|++|.+..+|+ .
T Consensus        12 ~v~~~~~n~l~------~-ip~-l~~~~~L~~L~l~~~--------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   75 (347)
T 2ifg_A           12 GLRCTRDGALD------S-LHH-LPGAENLTELYIENQ--------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (347)
T ss_dssp             CEECCSSCCCT------T-TTT-SCSCSCCSEEECCSC--------SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             EEEcCCCCCCC------c-cCC-CCCCCCeeEEEccCC--------CCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence            4566665 432      2 566 888889999999852        5677775 568889999999999999887765 6


Q ss_pred             hhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc
Q 037465          165 LCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL  206 (432)
Q Consensus       165 i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~  206 (432)
                      +..+++|++|+|++|. +..+|..+.....|+.|++.+|...
T Consensus        76 ~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             GGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCcc
Confidence            7889999999999988 6677766555445999999888543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.64  E-value=6.1e-07  Score=85.84  Aligned_cols=80  Identities=11%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             CCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCC
Q 037465          308 LQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESS  384 (432)
Q Consensus       308 l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~  384 (432)
                      +..+.+|+.+.+.......-...+.++.+|+.+.+..+  ++.+.  .+..+. |+.+.+...  ++.++...+.     
T Consensus       293 F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-----  363 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQ-----  363 (394)
T ss_dssp             TTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBT-----
T ss_pred             ccccccccccccccccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhh-----
Confidence            44566777777654322211334557777887777543  33332  355667 888777543  6777665443     


Q ss_pred             CCCCCCCCCCcceEEEeC
Q 037465          385 EDDPSSSSSSSSELSIEG  402 (432)
Q Consensus       385 ~~~~~~~~~~L~~L~i~~  402 (432)
                            .+++|+++.+..
T Consensus       364 ------~C~~L~~i~lp~  375 (394)
T 4fs7_A          364 ------GCINLKKVELPK  375 (394)
T ss_dssp             ------TCTTCCEEEEEG
T ss_pred             ------CCCCCCEEEECC
Confidence                  367788887754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.59  E-value=4.4e-09  Score=99.83  Aligned_cols=61  Identities=16%  Similarity=0.185  Sum_probs=34.1

Q ss_pred             CccccEEEeCCccccccc-hhhhc-----cCCccEEecccccccccCChhh-hcccccceEEcCCCCc
Q 037465          145 LIHLKYLNLSGLCIKRLP-ETLCE-----LYNLQKLDIRWCRNLRELPAGI-GKLMNMRSLLNDNTRS  205 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp-~~i~~-----l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~l~~~~~  205 (432)
                      +++|+.|++++|.+.... ..+..     ..+|++|++++|.....-...+ ..+++|+.|++++|..
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l  138 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL  138 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence            356778888877765322 12222     2577777777776322222222 2455677777777743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.53  E-value=1.4e-06  Score=83.33  Aligned_cols=89  Identities=10%  Similarity=0.052  Sum_probs=52.7

Q ss_pred             ccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCC
Q 037465          269 QLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNC  348 (432)
Q Consensus       269 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  348 (432)
                      .+..+..++.+.+..+.               ..-....+..+..++.+........  ...+..+.+|+.+.+..+  +
T Consensus       248 ~f~~~~~l~~~~~~~~~---------------~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i  308 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNK---------------LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--V  308 (394)
T ss_dssp             TTTTCSSCCEEEECCTT---------------CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--C
T ss_pred             cccccccceeEEcCCCc---------------ceeeccccccccccceeccCceeec--cccccccccccccccccc--c
Confidence            34566677777765443               1112234455666766665443211  223447889999998765  3


Q ss_pred             CCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465          349 EHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL  378 (432)
Q Consensus       349 ~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~  378 (432)
                      +.+.  .+..+. |+.++|.+  .++.++...+
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF  339 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF  339 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCT--TCCEECTTTT
T ss_pred             ceechhhhcCCCCCCEEEeCC--cccEEhHHhc
Confidence            3333  466778 99999864  3788876644

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=6.8e-08  Score=80.29  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=64.1

Q ss_pred             CCCcEEEEeeeCCCC-CChhhhccCCCcEEEEeCCCCCCC--CCCCCC----cc-cceEeccccccccccCccccCCCCC
Q 037465          312 VNVEELWIVYYGGNI-FPKWLTSLTNLRNLYLSSCFNCEH--LPPLGK----LP-LEKLTLYNLKSVKRVGNEFLGIEES  383 (432)
Q Consensus       312 ~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~--l~~~~~----l~-L~~L~l~~c~~l~~~~~~~~~~~~~  383 (432)
                      ..|+.|++++|..+. --..+..+++|+.|++++|..+++  +..++.    .+ |++|+|++|..+++.+...+.    
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~----  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH----  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG----
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh----
Confidence            457777777766432 122345889999999999976663  333444    36 999999999999988776654    


Q ss_pred             CCCCCCCCCCCcceEEEeCCcccccc
Q 037465          384 SEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       384 ~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                             .+++|++|++++||.+++.
T Consensus       137 -------~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          137 -------HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             -------GCTTCCEEEEESCTTCCCH
T ss_pred             -------cCCCCCEEECCCCCCCCch
Confidence                   3799999999999999864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=2.6e-07  Score=87.00  Aligned_cols=41  Identities=20%  Similarity=0.275  Sum_probs=18.2

Q ss_pred             CcceEEEeCCCCCCCC-CCCCcccccCccccCCccccEEEeCC
Q 037465          114 ACLRALVISQSSSFSH-PGPNLITEIPENVGKLIHLKYLNLSG  155 (432)
Q Consensus       114 ~~L~~L~L~~~~~~~~-~~~~~~~~lp~~~~~l~~L~~L~L~~  155 (432)
                      ..++.|.+..+. +.+ .....+..+..++..+++|+.|.+..
T Consensus       107 ~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~  148 (362)
T 2ra8_A          107 PSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGD  148 (362)
T ss_dssp             GGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECC
T ss_pred             hhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecC
Confidence            456777777531 110 00001112333344556666666644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=6.4e-08  Score=91.15  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=22.2

Q ss_pred             cCcccEEEEecCCcCccCc--cCCcchhhhccCCcceEEEeCC
Q 037465           83 FDRLRSLLIYDESLSNLSL--NGSILPELFSKLACLRALVISQ  123 (432)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~l~~L~~L~L~~  123 (432)
                      ...++.|.+..........  ....+..+...+++|+.|.+..
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~  148 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD  148 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC
Confidence            3457788877653210000  0001233356788999999876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.31  E-value=1.9e-05  Score=75.35  Aligned_cols=106  Identities=8%  Similarity=0.099  Sum_probs=68.0

Q ss_pred             cccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCC
Q 037465          268 LQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCF  346 (432)
Q Consensus       268 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~  346 (432)
                      ..+..+..|+.+.+....               ..-....+..+..|+.+.+... ...++ ..+.++.+|+.+.+..+ 
T Consensus       259 ~aF~~c~~L~~i~lp~~~---------------~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-  321 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV---------------VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-  321 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC---------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-
T ss_pred             ceeeecccccEEeccccc---------------ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-
Confidence            345677888888775432               1112234566788888887532 22233 34557889999988764 


Q ss_pred             CCCCCC--CCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCc
Q 037465          347 NCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       347 ~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                       ++.+.  .+..+. |+.+.|-.  +++.++...+.           .|.+|+.+.+.+..
T Consensus       322 -v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~-----------~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          322 -ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFS-----------NCTALNNIEYSGSR  368 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGT-----------TCTTCCEEEESSCH
T ss_pred             -ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhh-----------CCCCCCEEEECCce
Confidence             33333  466778 99998854  37888776554           37888888887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.23  E-value=6.6e-07  Score=75.91  Aligned_cols=116  Identities=16%  Similarity=0.059  Sum_probs=67.2

Q ss_pred             ccccccCcccEEEEecC-CcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEE
Q 037465           78 MSFFEFDRLRSLLIYDE-SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYL  151 (432)
Q Consensus        78 ~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L  151 (432)
                      ..+...+.|++|++++| .+..... .. +...+...++|++|+|++|         .++.     +...+...+.|++|
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~-~~-l~~~L~~~~~L~~L~Ls~n---------~i~~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTL-KA-CAEALKTNTYVKKFSIVGT---------RSNDPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHH-HH-HHHHHTTCCSCCEEECTTS---------CCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHH-HH-HHHHHHhCCCcCEEECcCC---------CCChHHHHHHHHHHHhCCCcCEE
Confidence            34456677777777777 5533111 11 3344566677777777773         3332     33344455667777


Q ss_pred             EeCCccccc-----cchhhhccCCccEEec--cccccccc----CChhhhcccccceEEcCCCC
Q 037465          152 NLSGLCIKR-----LPETLCELYNLQKLDI--RWCRNLRE----LPAGIGKLMNMRSLLNDNTR  204 (432)
Q Consensus       152 ~L~~~~l~~-----lp~~i~~l~~L~~L~l--~~~~~~~~----lp~~i~~l~~L~~L~l~~~~  204 (432)
                      +|++|.|..     +...+...++|++|++  ++|.+...    +...+...++|++|++++|.
T Consensus        99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            777777652     4455666667777777  55653222    23334455667777777663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=4.1e-07  Score=75.57  Aligned_cols=41  Identities=15%  Similarity=0.124  Sum_probs=23.1

Q ss_pred             ccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCc
Q 037465          218 SLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHL  262 (432)
Q Consensus       218 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  262 (432)
                      +|++|++++|...+    ...+..+.++++|+.|++++|..+++.
T Consensus       115 ~L~~L~Ls~C~~IT----D~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          115 SMLEMEIISCGNVT----DKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HCCEEEEESCTTCC----HHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             CCCEEEcCCCCcCC----HHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            45555555544333    334445556666777777777666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=1.1e-06  Score=78.53  Aligned_cols=36  Identities=28%  Similarity=0.243  Sum_probs=15.9

Q ss_pred             CccccEEEeCCcccccc---chhhhccCCccEEeccccc
Q 037465          145 LIHLKYLNLSGLCIKRL---PETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~  180 (432)
                      +++|+.|+|++|.+..+   |..+..+++|+.|+|++|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            44444444444443322   2233444444444444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=1.7e-06  Score=73.29  Aligned_cols=110  Identities=14%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             CCceEEEEeecC-CCCC-----CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCC
Q 037465           60 GGKVRHLGLNFE-GGAP-----LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPN  133 (432)
Q Consensus        60 ~~~i~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  133 (432)
                      ...++.|++.++ .+..     +...+...+.|++|++++|.+.....  ..+...+...+.|++|+|++         +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~--~~l~~~L~~n~~L~~L~L~~---------N  103 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVES---------N  103 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCS---------S
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH--HHHHHHHHhCCCcCEEECcC---------C
Confidence            567999999998 7765     45566778899999999996543211  11445577789999999999         4


Q ss_pred             cccc-----cCccccCCccccEEEe--CCcccc-----ccchhhhccCCccEEeccccc
Q 037465          134 LITE-----IPENVGKLIHLKYLNL--SGLCIK-----RLPETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       134 ~~~~-----lp~~~~~l~~L~~L~L--~~~~l~-----~lp~~i~~l~~L~~L~l~~~~  180 (432)
                      .++.     +...+...+.|++|++  ++|.++     .+...+...++|++|++++|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            5544     5566777889999999  888877     355667777999999999987

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.99  E-value=0.00015  Score=69.11  Aligned_cols=90  Identities=13%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             hcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCccccCCCC
Q 037465          306 KALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFLGIEE  382 (432)
Q Consensus       306 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~  382 (432)
                      ..+..+..|+.+.+.......-...+.++++|+.+.+...  +..++  .+..+. |+.+.|..  +++.++...+.   
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~---  331 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFA---  331 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT---
T ss_pred             ceeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhh---
Confidence            3566778888888754333322444558899999998643  34444  467788 99999965  48888776553   


Q ss_pred             CCCCCCCCCCCCcceEEEe------------CCccccccc
Q 037465          383 SSEDDPSSSSSSSSELSIE------------GCPLLENRY  410 (432)
Q Consensus       383 ~~~~~~~~~~~~L~~L~i~------------~cp~L~~~~  410 (432)
                              .|.+|+++.|.            +|.+|+++-
T Consensus       332 --------~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          332 --------GCEQLERIAIPSSVTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             --------TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEE
T ss_pred             --------CCCCCCEEEECcccCEEhHhHhhCCCCCCEEE
Confidence                    36778877774            577777763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.87  E-value=0.00041  Score=65.59  Aligned_cols=69  Identities=16%  Similarity=0.067  Sum_probs=40.3

Q ss_pred             cCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465          307 ALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL  378 (432)
Q Consensus       307 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~  378 (432)
                      .+..+..|+.+.+.......-...+..+++|+.+.+.++. ++.++  .+..+. |+.+.|..  +++.++...+
T Consensus       258 aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF  329 (379)
T 4h09_A          258 LLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAF  329 (379)
T ss_dssp             TTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred             ccceeehhccccccccceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHHHHh
Confidence            4555667777777543222212344577888888887652 33333  356667 88887753  3677766544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.83  E-value=4.4e-06  Score=74.64  Aligned_cols=82  Identities=21%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             ccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccC--CccEEecccccccccCCh-
Q 037465          111 SKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELY--NLQKLDIRWCRNLRELPA-  187 (432)
Q Consensus       111 ~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~-  187 (432)
                      ..+++|+.|+|++|..      ..+..+|..+..+++|++|+|++|.+..+. .+..+.  +|++|++++|.....+|. 
T Consensus       167 ~~l~~L~~L~Ls~N~l------~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRL------YRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             HHCTTCCEEECTTSCC------CCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred             hhCCCCCEEECCCCCC------CCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcc
Confidence            4566777777777311      112233444556677777777777766552 344444  666677666664444431 


Q ss_pred             ------hhhcccccceEE
Q 037465          188 ------GIGKLMNMRSLL  199 (432)
Q Consensus       188 ------~i~~l~~L~~L~  199 (432)
                            .+..+++|+.|+
T Consensus       240 ~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHCTTCCEES
T ss_pred             hhHHHHHHHHCcccCeEC
Confidence                  234555666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.77  E-value=0.00089  Score=63.25  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=45.8

Q ss_pred             cCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCC--CCCCcc-cceEeccccccccccCcccc
Q 037465          307 ALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLP--PLGKLP-LEKLTLYNLKSVKRVGNEFL  378 (432)
Q Consensus       307 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~l~-L~~L~l~~c~~l~~~~~~~~  378 (432)
                      .+..+..|+.+.+-......-...+.++.+|+.+.+...  +..++  .+..++ |+.+.+.++. ++.++...+
T Consensus       235 ~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF  306 (379)
T 4h09_A          235 AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVF  306 (379)
T ss_dssp             TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTT
T ss_pred             cccCCccceEEEcCCCccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhh
Confidence            456677888888855322222344558899999999764  33333  466788 9999997654 778876644

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.41  E-value=0.0013  Score=65.60  Aligned_cols=42  Identities=14%  Similarity=0.262  Sum_probs=36.6

Q ss_pred             ChhHHHHHHHHHHhCCCCccccCC----eeecHHHHHHHHHhhccce
Q 037465            1 MEMIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQFVCRKEC   43 (432)
Q Consensus         1 ~e~~~~~~~~~L~~~~li~~~~~~----~~mhdl~~~~~~~~~~~~~   43 (432)
                      +|++|+ ||++|+++||++....+    |+|||++|++|++++.+++
T Consensus       427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            467888 99999999999987543    9999999999999988765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.82  E-value=0.0048  Score=52.02  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=38.0

Q ss_pred             cCcccEEEEecC-CcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc-----cCccccCCccccEEEeCCc
Q 037465           83 FDRLRSLLIYDE-SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE-----IPENVGKLIHLKYLNLSGL  156 (432)
Q Consensus        83 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~L~~~  156 (432)
                      -+.|+.|+++++ .+.....  ..+...+.....|+.|+|++         +.+++     +...+..-+.|+.|+|++|
T Consensus        40 n~~L~~L~L~~nn~igd~ga--~~la~aL~~N~~L~~L~L~~---------n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERI--RSLIEAACNSKHIEKFSLAN---------TAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHH--HHHHHHHTTCSCCCEEECTT---------SCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             CCCccEEECCCCCCCCHHHH--HHHHHHHhhCCCcCEEEccC---------CCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            445666666553 3211100  01233345555666666666         23332     2222333345666666666


Q ss_pred             ccc-----ccchhhhccCCccEEeccc
Q 037465          157 CIK-----RLPETLCELYNLQKLDIRW  178 (432)
Q Consensus       157 ~l~-----~lp~~i~~l~~L~~L~l~~  178 (432)
                      .|.     .+-..+..-+.|+.|+|++
T Consensus       109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          109 FLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            554     2222333334456666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.42  E-value=0.014  Score=49.13  Aligned_cols=110  Identities=13%  Similarity=0.135  Sum_probs=76.5

Q ss_pred             CCceEEEEeecC-CCCC-----CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCC
Q 037465           60 GGKVRHLGLNFE-GGAP-----LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPN  133 (432)
Q Consensus        60 ~~~i~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  133 (432)
                      ...++.|.++++ .+..     +..++..-+.|+.|++++|.+.+...  ..+...+...+.|+.|+|++         +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga--~alA~aL~~N~tL~~L~L~~---------N  108 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVES---------N  108 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCS---------S
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH--HHHHHHHhcCCccCeEecCC---------C
Confidence            457888999874 5543     45556667789999999997654221  22566678889999999999         5


Q ss_pred             cccc-----cCccccCCccccEEEeCCcc---cc-----ccchhhhccCCccEEeccccc
Q 037465          134 LITE-----IPENVGKLIHLKYLNLSGLC---IK-----RLPETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       134 ~~~~-----lp~~~~~l~~L~~L~L~~~~---l~-----~lp~~i~~l~~L~~L~l~~~~  180 (432)
                      .++.     +...+..-..|+.|+|+++.   +.     .+...+..-+.|..|+++.+.
T Consensus       109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            5554     44455666779999998653   33     244455556778888887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.13  E-value=0.032  Score=43.62  Aligned_cols=46  Identities=22%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             Cccc--ccCccccCCccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465          133 NLIT--EIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR  180 (432)
Q Consensus       133 ~~~~--~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~  180 (432)
                      ..++  .+|..+.  .+|++|+|++|.|..+|. .+..+++|++|+|.+|.
T Consensus        18 ~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           18 RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5555  6665432  457777777777777765 35667777777777766

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.06  E-value=0.15  Score=39.74  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             cEEEeCCcccc--ccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCc
Q 037465          149 KYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       149 ~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~  205 (432)
                      ..++.++..++  .+|..+.  .+|++|+|++|. +..+|.. +..+++|+.|++.+|+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence            47788888888  8886543  479999999998 7777665 56788999999998854

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=89.40  E-value=0.27  Score=53.73  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHHhCCCCccccCC----eeecHHHHHHHHHhhccc
Q 037465            2 EMIGEEYFNMLATRSFFQEIEKD----CNMHDIVHDFAQFVCRKE   42 (432)
Q Consensus         2 e~~~~~~~~~L~~~~li~~~~~~----~~mhdl~~~~~~~~~~~~   42 (432)
                      ++.+++++++|++++|++....+    |+|||+++++++..+.++
T Consensus       408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            56789999999999999987554    999999999999887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 13/117 (11%)

Query: 96  LSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSG 155
           L+  +L+  +   L S+   + A    +         + + +          +++++LS 
Sbjct: 7   LTGKNLHPDVTGRLLSQG--VIAFRCPR---------SFMDQPLAEHFSPFRVQHMDLSN 55

Query: 156 LCIKR--LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP 210
             I+   L   L +   LQ L +   R    +   + K  N+  L            
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 133 NLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL 192
             +T +  ++ +L+ + +L+LS   ++ LP  L  L  L+ L                  
Sbjct: 8   KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR 66

Query: 193 MNMRSLLNDNTRSLKYMPIGISKLTSLRTL 222
           +    L N+  +        +     L  L
Sbjct: 67  LQELLLCNNRLQQSA-AIQPLVSCPRLVLL 95

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 12/130 (9%)

Query: 95  SLSNLSLNG----SILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKY 150
             + L L       I    F  L  L  L++            +    P     L+ L+ 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILIN--------NKISKISPGAFAPLVKLER 83

Query: 151 LNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMP 210
           L LS   +K LPE + +     ++       +R+        M +  L  +  +S     
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 211 IGISKLTSLR 220
                +  L 
Sbjct: 144 GAFQGMKKLS 153

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 95  SLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLS 154
           SL  L+++ + L EL +    L  L+ S          N + E+PE      +LK L++ 
Sbjct: 285 SLEELNVSNNKLIELPALPPRLERLIASF---------NHLAEVPELPQ---NLKQLHVE 332

Query: 155 GLCIKRLPETLCELYNLQ 172
              ++  P+    + +L+
Sbjct: 333 YNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 145 LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTR 204
              L+ LN+S   +  LP        L++L   +  +L E+P     L  +   +  N  
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQLH--VEYN-- 334

Query: 205 SLKYMPIGISKLTSLR 220
            L+  P     +  LR
Sbjct: 335 PLREFPDIPESVEDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.74

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.5e-22  Score=186.83  Aligned_cols=235  Identities=22%  Similarity=0.235  Sum_probs=135.8

Q ss_pred             hhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccccc-chhhhccCCccEEecccccccccC
Q 037465          107 PELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRL-PETLCELYNLQKLDIRWCRNLREL  185 (432)
Q Consensus       107 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l  185 (432)
                      |+.+..+++|++|++++|.       ...+.+|..|+++++|++|++++|.+..+ +..+..+.+|+++++++|.....+
T Consensus        69 p~~l~~L~~L~~L~Ls~~N-------~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGIN-------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEET-------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             ChHHhcCcccccccccccc-------ccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccC
Confidence            3345555555555555420       22234555555555555555555554433 233555555555555555544555


Q ss_pred             ChhhhcccccceEEcCCCCccccCCccCCccccc-ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchh
Q 037465          186 PAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL-RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDE  264 (432)
Q Consensus       186 p~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  264 (432)
                      |..++.++.++.+++++|...+.+|..+..+.++ +.+.+..+...     ...+..+..+.. ..+++...    ....
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-----~~~~~~~~~l~~-~~l~l~~~----~~~~  211 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----GKIPPTFANLNL-AFVDLSRN----MLEG  211 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----EECCGGGGGCCC-SEEECCSS----EEEE
T ss_pred             chhhccCcccceeecccccccccccccccccccccccccccccccc-----cccccccccccc-cccccccc----cccc
Confidence            5555555555555555555544555555444443 33444333322     112223333322 12333331    1111


Q ss_pred             hhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEe
Q 037465          265 AERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLS  343 (432)
Q Consensus       265 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~  343 (432)
                      ..+..+..+++++.+++.++.+              .. .+..+..+++|+.|++++|... .+|.++..+++|++|+|+
T Consensus       212 ~~~~~~~~~~~l~~l~~~~~~l--------------~~-~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         212 DASVLFGSDKNTQKIHLAKNSL--------------AF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEE--------------CC-BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccc--------------cc-cccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            2234455667777777777662              12 2234666788888888888776 679999999999999999


Q ss_pred             CCCCCCCCCCCCCcc-cceEecccccccccc
Q 037465          344 SCFNCEHLPPLGKLP-LEKLTLYNLKSVKRV  373 (432)
Q Consensus       344 ~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~  373 (432)
                      +|...+.+|.++++. |+.+++.+|+.+...
T Consensus       277 ~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             CCcccccCCCcccCCCCCHHHhCCCccccCC
Confidence            997777889888899 999999998866554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=3.3e-20  Score=175.68  Aligned_cols=299  Identities=20%  Similarity=0.199  Sum_probs=200.2

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.|.+.++++..+ ..+.++++|++|++++|+++.       ++. ++.+++|++|++++         +.+..++
T Consensus        43 l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~-------l~~-l~~L~~L~~L~L~~---------n~i~~i~  104 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNN---------NQIADIT  104 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCS---------SCCCCCG
T ss_pred             hCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCC-------Ccc-ccCCcccccccccc---------ccccccc
Confidence            45799999999999876 467889999999999996533       344 88999999999999         6677775


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEeccccc---------------------------------------
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCR---------------------------------------  180 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~---------------------------------------  180 (432)
                       .++++++|+.|+++++.+..++.. .....+..+....+.                                       
T Consensus       105 -~l~~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (384)
T d2omza2         105 -PLANLTNLTGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI  182 (384)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred             -cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccc
Confidence             488999999999998887655432 222223322222111                                       


Q ss_pred             --ccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCC
Q 037465          181 --NLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGN  258 (432)
Q Consensus       181 --~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  258 (432)
                        .....+.....+++++.+++++|......|  .+.+++|++|++.++...       .++.+..+++|+.+++.++.-
T Consensus       183 ~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-------~~~~l~~l~~L~~L~l~~n~l  253 (384)
T d2omza2         183 SSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-------DIGTLASLTNLTDLDLANNQI  253 (384)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-------CCGGGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-------CcchhhcccccchhccccCcc
Confidence              001112345667888888888885443322  456778888888777544       334567788888888887532


Q ss_pred             CCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCc
Q 037465          259 VSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLR  338 (432)
Q Consensus       259 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~  338 (432)
                       ...     ..+..+++|+.|+++++.+.+                ...+..++.++.+.+..+.... ...+..+++++
T Consensus       254 -~~~-----~~~~~~~~L~~L~l~~~~l~~----------------~~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~  310 (384)
T d2omza2         254 -SNL-----APLSGLTKLTELKLGANQISN----------------ISPLAGLTALTNLELNENQLED-ISPISNLKNLT  310 (384)
T ss_dssp             -CCC-----GGGTTCTTCSEEECCSSCCCC----------------CGGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCS
T ss_pred             -CCC-----CcccccccCCEeeccCcccCC----------------CCcccccccccccccccccccc-ccccchhcccC
Confidence             221     236677888999888877321                1235566777777777766665 33456778888


Q ss_pred             EEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCccccccccCCCCCC
Q 037465          339 NLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENRYREGKGED  417 (432)
Q Consensus       339 ~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~~~~~~~~~  417 (432)
                      .|++++|. +..++.++.+| |++|++++|. ++.++.  +.           .+++|+.|++++| +++.+.+      
T Consensus       311 ~L~ls~n~-l~~l~~l~~l~~L~~L~L~~n~-l~~l~~--l~-----------~l~~L~~L~l~~N-~l~~l~~------  368 (384)
T d2omza2         311 YLTLYFNN-ISDISPVSSLTKLQRLFFANNK-VSDVSS--LA-----------NLTNINWLSAGHN-QISDLTP------  368 (384)
T ss_dssp             EEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCCGG--GG-----------GCTTCCEEECCSS-CCCBCGG------
T ss_pred             eEECCCCC-CCCCcccccCCCCCEEECCCCC-CCCChh--Hc-----------CCCCCCEEECCCC-cCCCChh------
Confidence            88888774 44555567778 8888888874 666642  11           3678888888777 4665543      


Q ss_pred             cccccCCCCccCCCC
Q 037465          418 WHKISHIPHIQMSPD  432 (432)
Q Consensus       418 ~~~~~~~~~~~~~~~  432 (432)
                      +..++++..+.++||
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            234566666766654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.3e-19  Score=171.47  Aligned_cols=262  Identities=21%  Similarity=0.198  Sum_probs=188.0

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR  160 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~  160 (432)
                      ..+.+|++|+++++.+++       +.. +..+++|++|++++         +.++.+| .++++++|++|++++|.+..
T Consensus        41 ~~l~~l~~L~l~~~~I~~-------l~g-l~~L~nL~~L~Ls~---------N~l~~l~-~l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS-------IDG-VEYLNNLTQINFSN---------NQLTDIT-PLKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC-------CTT-GGGCTTCCEEECCS---------SCCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred             HHhCCCCEEECCCCCCCC-------ccc-cccCCCCCEEeCcC---------CcCCCCc-cccCCccccccccccccccc
Confidence            567889999999996532       333 78899999999999         7788887 49999999999999999998


Q ss_pred             cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCC------------------------------------
Q 037465          161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTR------------------------------------  204 (432)
Q Consensus       161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~------------------------------------  204 (432)
                      ++ .++.+++|+.|+++++. ...++.. .....+..+....+.                                    
T Consensus       103 i~-~l~~l~~L~~L~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (384)
T d2omza2         103 IT-PLANLTNLTGLTLFNNQ-ITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER  179 (384)
T ss_dssp             CG-GGTTCTTCCEEECCSSC-CCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE
T ss_pred             cc-ccccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccccccchhhhhcccccccc
Confidence            87 58999999999999887 3333221 112222222111110                                    


Q ss_pred             -----ccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceE
Q 037465          205 -----SLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCL  279 (432)
Q Consensus       205 -----~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L  279 (432)
                           ...........+++++.+++..+...       ........++|+.+++.++.- ...     ..+..+++|+.+
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~-------~~~~~~~~~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L  246 (384)
T d2omza2         180 LDISSNKVSDISVLAKLTNLESLIATNNQIS-------DITPLGILTNLDELSLNGNQL-KDI-----GTLASLTNLTDL  246 (384)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCC-------CCGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEE
T ss_pred             ccccccccccccccccccccceeeccCCccC-------CCCcccccCCCCEEECCCCCC-CCc-----chhhcccccchh
Confidence                 01112233456777888877766544       233456678899999987532 222     356788999999


Q ss_pred             EEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-
Q 037465          280 HLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-  358 (432)
Q Consensus       280 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-  358 (432)
                      ++++|.+.+                ...+..+++|++|+++++....++ .+..++.++.+.+.+|. +..++.+..++ 
T Consensus       247 ~l~~n~l~~----------------~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~-l~~~~~~~~~~~  308 (384)
T d2omza2         247 DLANNQISN----------------LAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ-LEDISPISNLKN  308 (384)
T ss_dssp             ECCSSCCCC----------------CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CSCCGGGGGCTT
T ss_pred             ccccCccCC----------------CCcccccccCCEeeccCcccCCCC-ccccccccccccccccc-cccccccchhcc
Confidence            999988321                224677899999999998887754 46688999999999984 45566677888 


Q ss_pred             cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          359 LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       359 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                      ++.|+++++. ++.++.  .           ..+++|++|++++| +++.+
T Consensus       309 l~~L~ls~n~-l~~l~~--l-----------~~l~~L~~L~L~~n-~l~~l  344 (384)
T d2omza2         309 LTYLTLYFNN-ISDISP--V-----------SSLTKLQRLFFANN-KVSDV  344 (384)
T ss_dssp             CSEEECCSSC-CSCCGG--G-----------GGCTTCCEEECCSS-CCCCC
T ss_pred             cCeEECCCCC-CCCCcc--c-----------ccCCCCCEEECCCC-CCCCC
Confidence            9999999986 777642  1           24899999999999 55543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=6.4e-21  Score=175.82  Aligned_cols=252  Identities=17%  Similarity=0.099  Sum_probs=200.1

Q ss_pred             CCceEEEEeecCCCCC---CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccc
Q 037465           60 GGKVRHLGLNFEGGAP---LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLIT  136 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  136 (432)
                      ..+|+.|++.++.+..   +|..+.++++|++|+++++.    .+++. +|..+.++++|++|++++         +.+.
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N----~l~g~-iP~~i~~L~~L~~L~Ls~---------N~l~  114 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN----NLVGP-IPPAIAKLTQLHYLYITH---------TNVS  114 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET----TEESC-CCGGGGGCTTCSEEEEEE---------ECCE
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccc----ccccc-cccccccccccchhhhcc---------cccc
Confidence            3479999999988774   78999999999999999732    56666 566699999999999999         5555


Q ss_pred             cc-CccccCCccccEEEeCCccc-cccchhhhccCCccEEecccccccccCChhhhccccc-ceEEcCCCCccccCCccC
Q 037465          137 EI-PENVGKLIHLKYLNLSGLCI-KRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNM-RSLLNDNTRSLKYMPIGI  213 (432)
Q Consensus       137 ~l-p~~~~~l~~L~~L~L~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L-~~L~l~~~~~~~~~p~~l  213 (432)
                      .+ +..+..+.+|+++++++|.+ ..+|..+..+++|+++++++|...+.+|..++.+..+ +.+++++|......|..+
T Consensus       115 ~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             ccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            54 66688899999999999984 4788999999999999999999777899999988886 888999997777777766


Q ss_pred             CcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHH
Q 037465          214 SKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEE  293 (432)
Q Consensus       214 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  293 (432)
                      +.+..+ .+++..+...     ...+..+..+++++.+++..+....     .+..+..+++|+.|++++|.        
T Consensus       195 ~~l~~~-~l~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~l~~-----~~~~~~~~~~L~~L~Ls~N~--------  255 (313)
T d1ogqa_         195 ANLNLA-FVDLSRNMLE-----GDASVLFGSDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNR--------  255 (313)
T ss_dssp             GGCCCS-EEECCSSEEE-----ECCGGGCCTTSCCSEEECCSSEECC-----BGGGCCCCTTCCEEECCSSC--------
T ss_pred             cccccc-cccccccccc-----ccccccccccccccccccccccccc-----cccccccccccccccCccCe--------
Confidence            665443 4655554443     3355666788889998888743321     23457788999999999998        


Q ss_pred             HhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCC-CCChhhhccCCCcEEEEeCCCCCCCC
Q 037465          294 RRRKKEKDEQLLKALQPPVNVEELWIVYYGGN-IFPKWLTSLTNLRNLYLSSCFNCEHL  351 (432)
Q Consensus       294 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l  351 (432)
                            ..+.++..+..+++|++|++++|... .+|. +..+++|+.+++++|+.+...
T Consensus       256 ------l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         256 ------IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ------CEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ------ecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence                  44567788899999999999998776 5674 468899999999999765543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.4e-18  Score=159.34  Aligned_cols=264  Identities=19%  Similarity=0.179  Sum_probs=146.9

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~  144 (432)
                      ++-++.+++.+|..+.  +++++|++++|+++      .+.+..|.++++|++|++++         +.+..+ |..|.+
T Consensus        15 ~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~------~l~~~~f~~l~~L~~L~l~~---------n~~~~i~~~~f~~   77 (305)
T d1xkua_          15 VQCSDLGLEKVPKDLP--PDTALLDLQNNKIT------EIKDGDFKNLKNLHTLILIN---------NKISKISPGAFAP   77 (305)
T ss_dssp             EECTTSCCCSCCCSCC--TTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCS---------SCCCCBCTTTTTT
T ss_pred             EEecCCCCCccCCCCC--CCCCEEECcCCcCC------CcChhHhhcccccccccccc---------ccccccchhhhhC
Confidence            3444455555665543  45667777766432      11233466666777777766         445555 445666


Q ss_pred             CccccEEEeCCccccccchhhhccCCccEEecccccccccCChh-hhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465          145 LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAG-IGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG  223 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  223 (432)
                      +++|++|++++|+++.+|..+  ...|+.|++.++. +..++.. +.....+..+....+.....               
T Consensus        78 l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------  139 (305)
T d1xkua_          78 LVKLERLYLSKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS---------------  139 (305)
T ss_dssp             CTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG---------------
T ss_pred             CCccCEecccCCccCcCccch--hhhhhhhhccccc-hhhhhhhhhhcccccccccccccccccc---------------
Confidence            667777777776666666432  3456666666655 3333332 33344455555544422110               


Q ss_pred             ceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHh
Q 037465          224 KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQ  303 (432)
Q Consensus       224 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  303 (432)
                                  ......+..+++|+.+.+.++... ..+      ...+++|+.|++++|.              ....
T Consensus       140 ------------~~~~~~~~~l~~L~~l~l~~n~l~-~l~------~~~~~~L~~L~l~~n~--------------~~~~  186 (305)
T d1xkua_         140 ------------GIENGAFQGMKKLSYIRIADTNIT-TIP------QGLPPSLTELHLDGNK--------------ITKV  186 (305)
T ss_dssp             ------------GBCTTGGGGCTTCCEEECCSSCCC-SCC------SSCCTTCSEEECTTSC--------------CCEE
T ss_pred             ------------CCCccccccccccCccccccCCcc-ccC------cccCCccCEEECCCCc--------------CCCC
Confidence                        111222333344444444432211 100      1123556666666655              2233


Q ss_pred             hhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccccccccCccccCC
Q 037465          304 LLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLKSVKRVGNEFLGI  380 (432)
Q Consensus       304 ~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~~l~~~~~~~~~~  380 (432)
                      ....+..++.++.|+++++....+ +.++.++++|+.|++++|. ++.+| .+..++ |++|++++|. |++++...+..
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~  264 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP  264 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCCc-cCccChhhccC
Confidence            344556667777777777666554 5566688888888888884 44454 577788 8888888875 88887654432


Q ss_pred             CCCCCCCCCCCCCCcceEEEeCCc
Q 037465          381 EESSEDDPSSSSSSSSELSIEGCP  404 (432)
Q Consensus       381 ~~~~~~~~~~~~~~L~~L~i~~cp  404 (432)
                      ...     ....++|+.|+++++|
T Consensus       265 ~~~-----~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         265 PGY-----NTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSC-----CTTSCCCSEEECCSSS
T ss_pred             cch-----hcccCCCCEEECCCCc
Confidence            110     0236778888888887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=1.2e-18  Score=159.69  Aligned_cols=244  Identities=18%  Similarity=0.167  Sum_probs=174.1

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      .+.+++|+++++.++.++. .|.++++|++|++++|.+     .. +.+..|..+++|++|++++         +.++.+
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~-----~~-i~~~~f~~l~~L~~L~l~~---------n~l~~l   94 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-----SK-ISPGAFAPLVKLERLYLSK---------NQLKEL   94 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-----CC-BCTTTTTTCTTCCEEECCS---------SCCSBC
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccc-----cc-cchhhhhCCCccCEecccC---------CccCcC
Confidence            5789999999999999876 689999999999999954     32 2456689999999999999         778888


Q ss_pred             CccccCCccccEEEeCCccccccch-hhhccCCccEEeccccccc--ccCChhhhcccccceEEcCCCCccccCCccCCc
Q 037465          139 PENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNL--RELPAGIGKLMNMRSLLNDNTRSLKYMPIGISK  215 (432)
Q Consensus       139 p~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~  215 (432)
                      |..+  ...++.|.+..+.+..++. .+.....++.++...+...  ...+..+..+++|+.+++.+|.. ..+|..  .
T Consensus        95 ~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~--~  169 (305)
T d1xkua_          95 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQG--L  169 (305)
T ss_dssp             CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSS--C
T ss_pred             ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCcc--c
Confidence            8654  4689999999999888775 3556677888888776522  33455677889999999998843 344443  2


Q ss_pred             ccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHh
Q 037465          216 LTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERR  295 (432)
Q Consensus       216 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  295 (432)
                      +++|++|++.++...     ......+..                            ++.++.|.+++|.+         
T Consensus       170 ~~~L~~L~l~~n~~~-----~~~~~~~~~----------------------------~~~l~~L~~s~n~l---------  207 (305)
T d1xkua_         170 PPSLTELHLDGNKIT-----KVDAASLKG----------------------------LNNLAKLGLSFNSI---------  207 (305)
T ss_dssp             CTTCSEEECTTSCCC-----EECTGGGTT----------------------------CTTCCEEECCSSCC---------
T ss_pred             CCccCEEECCCCcCC-----CCChhHhhc----------------------------cccccccccccccc---------
Confidence            566777766554433     112233333                            44455555555541         


Q ss_pred             hhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCC--------CCCcc-cceEeccc
Q 037465          296 RKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPP--------LGKLP-LEKLTLYN  366 (432)
Q Consensus       296 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--------~~~l~-L~~L~l~~  366 (432)
                           .......+..+++|++|++++|....+|.++..+++|++|++++|. ++.++.        ....+ |+.|++++
T Consensus       208 -----~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         208 -----SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             -----CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             -----cccccccccccccceeeecccccccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCC
Confidence                 1112234455677888888888777888888899999999999985 444432        23467 99999999


Q ss_pred             cccccc
Q 037465          367 LKSVKR  372 (432)
Q Consensus       367 c~~l~~  372 (432)
                      ++ ++.
T Consensus       282 N~-~~~  286 (305)
T d1xkua_         282 NP-VQY  286 (305)
T ss_dssp             SS-SCG
T ss_pred             Cc-Ccc
Confidence            88 443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.6e-17  Score=145.31  Aligned_cols=175  Identities=19%  Similarity=0.055  Sum_probs=94.5

Q ss_pred             CcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcc
Q 037465          114 ACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKL  192 (432)
Q Consensus       114 ~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l  192 (432)
                      +++++|+|++         +.++.+| ..|.++++|++|++++|.++.+| .++.+++|++|++++|. +...+..+..+
T Consensus        31 ~~l~~L~Ls~---------N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l   99 (266)
T d1p9ag_          31 KDTTILHLSE---------NLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQ-LQSLPLLGQTL   99 (266)
T ss_dssp             TTCCEEECTT---------SCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred             cCCCEEECcC---------CcCCCcCHHHhhccccccccccccccccccc-ccccccccccccccccc-ccccccccccc
Confidence            4566666666         5565554 34566666666666666666665 34556666666666665 44555555666


Q ss_pred             cccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhccccc
Q 037465          193 MNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYN  272 (432)
Q Consensus       193 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  272 (432)
                      ++|+.|+++++......+..+..+.+++.|++..+....                                 .....+..
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~---------------------------------l~~~~~~~  146 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------------------LPPGLLTP  146 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------------------CCTTTTTT
T ss_pred             cccccccccccccceeeccccccccccccccccccccce---------------------------------eccccccc
Confidence            666666666664433333334444555555444332221                                 01122334


Q ss_pred             ccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCC
Q 037465          273 QQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCF  346 (432)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  346 (432)
                      +++++.+++++|.+              .......+..+++|++|++++|....+|..+..+++|+.|++++|+
T Consensus       147 l~~l~~l~l~~N~l--------------~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         147 TPKLEKLSLANNNL--------------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTCCEEECTTSCC--------------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccchhcccccccc--------------cccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            45555555555552              1112233445555666666655555556655566666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=144.94  Aligned_cols=218  Identities=17%  Similarity=0.126  Sum_probs=127.6

Q ss_pred             EeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccCC
Q 037465           67 GLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGKL  145 (432)
Q Consensus        67 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~l  145 (432)
                      ...+.++..+|..+.  +.+++|++++|+++      .+.+..|..+++|++|++++         +.+..+ +..+..+
T Consensus        17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~------~i~~~~f~~l~~L~~L~ls~---------n~l~~i~~~~~~~~   79 (284)
T d1ozna_          17 SCPQQGLQAVPVGIP--AASQRIFLHGNRIS------HVPAASFRACRNLTILWLHS---------NVLARIDAAAFTGL   79 (284)
T ss_dssp             ECCSSCCSSCCTTCC--TTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCS---------SCCCEECTTTTTTC
T ss_pred             EcCCCCCCccCCCCC--CCCCEEECcCCcCC------CCCHHHhhcccccccccccc---------cccccccccccccc
Confidence            445556666666543  45777777777442      22344577777788888777         555555 3344556


Q ss_pred             ccccEEEeCCcc-ccccc-hhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccccc
Q 037465          146 IHLKYLNLSGLC-IKRLP-ETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLG  223 (432)
Q Consensus       146 ~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  223 (432)
                      ..++.+....+. +..++ ..+..+++|++|++++|......+..+..+++|+.+++++|......+..+..+++|++|+
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence            677777665433 55553 4567777777777777763333333455667777777777744332234455666666666


Q ss_pred             ceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHh
Q 037465          224 KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQ  303 (432)
Q Consensus       224 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  303 (432)
                      +.++....     ...                            ..+..+++|+.+.+++|.              ....
T Consensus       160 l~~N~l~~-----l~~----------------------------~~f~~l~~L~~l~l~~N~--------------l~~i  192 (284)
T d1ozna_         160 LHGNRISS-----VPE----------------------------RAFRGLHSLDRLLLHQNR--------------VAHV  192 (284)
T ss_dssp             CCSSCCCE-----ECT----------------------------TTTTTCTTCCEEECCSSC--------------CCEE
T ss_pred             cccCcccc-----cch----------------------------hhhccccccchhhhhhcc--------------cccc
Confidence            65544321     111                            233444555555555555              1222


Q ss_pred             hhhcCCCCCCCcEEEEeeeCCCCCC-hhhhccCCCcEEEEeCCCCC
Q 037465          304 LLKALQPPVNVEELWIVYYGGNIFP-KWLTSLTNLRNLYLSSCFNC  348 (432)
Q Consensus       304 ~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  348 (432)
                      .+..+..+++|++|++++|....++ .++..+++|++|++++|+..
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            3345556666667776666665544 45667888888888887543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-16  Score=141.03  Aligned_cols=196  Identities=15%  Similarity=0.067  Sum_probs=144.5

Q ss_pred             ceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcc
Q 037465           62 KVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPEN  141 (432)
Q Consensus        62 ~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~  141 (432)
                      ....++.++.++..+|..+.  +++++|++++|++     +. +.+..|..+++|++|++++         +.++.+| .
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i-----~~-l~~~~f~~l~~L~~L~L~~---------N~l~~l~-~   72 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLL-----YT-FSLATLMPYTRLTQLNLDR---------AELTKLQ-V   72 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCC-----SE-EEGGGGTTCTTCCEEECTT---------SCCCEEE-C
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcC-----CC-cCHHHhhcccccccccccc---------ccccccc-c
Confidence            34456788888888887764  5799999999954     32 3556689999999999999         6788886 4


Q ss_pred             ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT  221 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  221 (432)
                      ++.+++|++|++++|.+...+..+..+++|++|+++++......+..+..+.+++.|++.+|......+..+..+++++.
T Consensus        73 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (266)
T ss_dssp             CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchh
Confidence            67899999999999999988888999999999999999854545555678899999999999554444455677889999


Q ss_pred             ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      +++.++...     ......+..+++|+.|++++.. +...    +..+..+++|+.|++++|.
T Consensus       153 l~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~-L~~l----p~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         153 LSLANNNLT-----ELPAGLLNGLENLDTLLLQENS-LYTI----PKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EECTTSCCS-----CCCTTTTTTCTTCCEEECCSSC-CCCC----CTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccc-----ccCccccccccccceeecccCC-Cccc----ChhHCCCCCCCEEEecCCC
Confidence            988877654     2233445666777777776532 2222    2233445666666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.3e-16  Score=139.77  Aligned_cols=210  Identities=19%  Similarity=0.125  Sum_probs=107.9

Q ss_pred             cccccCccccCCccccEEEeCCccccccch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccC-Cc
Q 037465          134 LITEIPENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYM-PI  211 (432)
Q Consensus       134 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~  211 (432)
                      .++.+|..+.  ..+++|+|++|+|+.+|+ .+..+++|++|+++++......+..+..++.++.+....+.....+ +.
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch
Confidence            3444444332  344555555555555543 3455555555555555422222222334445555544433333333 23


Q ss_pred             cCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCch
Q 037465          212 GISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGED  291 (432)
Q Consensus       212 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  291 (432)
                      .+..+++|++|++..+...     ......+...++|+.+++.+.. +..   .....+..+++|++|++++|.+     
T Consensus       100 ~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~l~l~~N~-l~~---i~~~~f~~~~~L~~L~l~~N~l-----  165 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYLQDNA-LQA---LPDDTFRDLGNLTHLFLHGNRI-----  165 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECCSSC-CCC---CCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             hhcccccCCEEecCCcccc-----cccccccchhcccchhhhcccc-ccc---cChhHhccccchhhcccccCcc-----
Confidence            3445555555555444332     1122233344445555544411 111   1122355666777777777762     


Q ss_pred             HHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCC-ChhhhccCCCcEEEEeCCCCCCCCC-CCCCcc-cceEeccccc
Q 037465          292 EERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIF-PKWLTSLTNLRNLYLSSCFNCEHLP-PLGKLP-LEKLTLYNLK  368 (432)
Q Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~l~-L~~L~l~~c~  368 (432)
                               ..-....+..+++|+.+.+.+|....+ |.++..+++|+.|++++|...+..+ .++.++ |+.|++++++
T Consensus       166 ---------~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         166 ---------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             ---------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ---------cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence                     222234556677777777777666543 5666777778888887775544333 356677 7777777755

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=9.6e-15  Score=135.64  Aligned_cols=286  Identities=21%  Similarity=0.159  Sum_probs=156.5

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .++++|++++++++.+|..   .++|++|++++|+++      . +|+.   ..+|+.|++++         +.++.++.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~------~-lp~~---~~~L~~L~l~~---------n~l~~l~~   95 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLT------E-LPEL---PQSLKSLLVDN---------NNLKALSD   95 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS------S-CCCC---CTTCCEEECCS---------SCCSCCCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc------c-cccc---hhhhhhhhhhh---------cccchhhh
Confidence            3577899999998888864   468899999998653      2 3432   45789999988         55555542


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                      -   .+.|++|++++|.+..+| .++.+++|++|+++++. ....+..   ...+..+.+..+....  +..++.++.++
T Consensus        96 l---p~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~~~--~~~l~~l~~l~  165 (353)
T d1jl5a_          96 L---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLEE--LPELQNLPFLT  165 (353)
T ss_dssp             C---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSS--CCCCTTCTTCC
T ss_pred             h---cccccccccccccccccc-chhhhccceeecccccc-ccccccc---cccccchhhccccccc--cccccccccce
Confidence            1   246899999999998888 46788999999998887 4444432   2344555554442211  22344455555


Q ss_pred             cccceEecccccC-------------CCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecccc
Q 037465          221 TLGKFVVGGGVDG-------------SSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVV  287 (432)
Q Consensus       221 ~L~l~~~~~~~~~-------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  287 (432)
                      .+.+..+......             ........+..++.|+.+++........        .....++..+.+..+.+.
T Consensus       166 ~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--------~~~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         166 AIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL--------PDLPPSLEALNVRDNYLT  237 (353)
T ss_dssp             EEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC--------CSCCTTCCEEECCSSCCS
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccc
Confidence            5554443322110             0011223344555666666654322110        122234444444444321


Q ss_pred             CCchHHHhhhh-hhhHhhhhcCCCC-CCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEec
Q 037465          288 DGEDEERRRKK-EKDEQLLKALQPP-VNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTL  364 (432)
Q Consensus       288 ~~~~~~~~~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l  364 (432)
                      +.......... .........+..+ ......++..+.   ++.....+++|++|++++|. +..+|.  .++ |+.|++
T Consensus       238 ~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~N~-l~~lp~--~~~~L~~L~L  311 (353)
T d1jl5a_         238 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE---IRSLCDLPPSLEELNVSNNK-LIELPA--LPPRLERLIA  311 (353)
T ss_dssp             CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC---CSEECCCCTTCCEEECCSSC-CSCCCC--CCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccchhcccccccCc---cccccccCCCCCEEECCCCc-cCcccc--ccCCCCEEEC
Confidence            11100000000 0000000000001 111112211111   12222346889999999984 556663  478 999999


Q ss_pred             cccccccccCccccCCCCCCCCCCCCCCCCcceEEEeCCcccccc
Q 037465          365 YNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIEGCPLLENR  409 (432)
Q Consensus       365 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~cp~L~~~  409 (432)
                      ++|. +++++.               .+++|++|++++|+ |+++
T Consensus       312 ~~N~-L~~l~~---------------~~~~L~~L~L~~N~-L~~l  339 (353)
T d1jl5a_         312 SFNH-LAEVPE---------------LPQNLKQLHVEYNP-LREF  339 (353)
T ss_dssp             CSSC-CSCCCC---------------CCTTCCEEECCSSC-CSSC
T ss_pred             CCCc-CCcccc---------------ccCCCCEEECcCCc-CCCC
Confidence            8886 887764               36789999999997 7654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6.1e-16  Score=135.04  Aligned_cols=189  Identities=21%  Similarity=0.235  Sum_probs=105.9

Q ss_pred             ccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccccc
Q 037465          142 VGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRT  221 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  221 (432)
                      +..+.+|++|++.+|.+++++ .+..+++|++|++++|. +..++ .+..+++|+.+++++|.. ..++ .+..+++|+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGNPL-KNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCce-eeccc-cccccccccccccccccc-cccc-cccccccccc
Confidence            345666777777777766664 56667777777777766 33333 256666677776666632 2222 2445555555


Q ss_pred             ccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhh
Q 037465          222 LGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKD  301 (432)
Q Consensus       222 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  301 (432)
                      +.+..+...       ....+..                            .+.++.+.++++.+.              
T Consensus       112 l~l~~~~~~-------~~~~~~~----------------------------~~~~~~l~~~~~~~~--------------  142 (227)
T d1h6ua2         112 LDLTSTQIT-------DVTPLAG----------------------------LSNLQVLYLDLNQIT--------------  142 (227)
T ss_dssp             EECTTSCCC-------CCGGGTT----------------------------CTTCCEEECCSSCCC--------------
T ss_pred             ccccccccc-------ccchhcc----------------------------ccchhhhhchhhhhc--------------
Confidence            554433222       1222233                            334444444443311              


Q ss_pred             HhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCCCCCcc-cceEeccccccccccCccccCC
Q 037465          302 EQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGI  380 (432)
Q Consensus       302 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~  380 (432)
                        ....+..+++|+.|.+.++..... ..+.++++|+.|++++| .++.++.++.+| |++|++++|+ +++++.  +  
T Consensus       143 --~~~~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~i~~--l--  213 (227)
T d1h6ua2         143 --NISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP--L--  213 (227)
T ss_dssp             --CCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG--G--
T ss_pred             --hhhhhccccccccccccccccccc-hhhcccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCCCcc--c--
Confidence              011233445566666655555442 23567778888888777 455666677777 8888888774 776653  1  


Q ss_pred             CCCCCCCCCCCCCCcceEEEeC
Q 037465          381 EESSEDDPSSSSSSSSELSIEG  402 (432)
Q Consensus       381 ~~~~~~~~~~~~~~L~~L~i~~  402 (432)
                               +.+++|+.|++++
T Consensus       214 ---------~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ---------ANTSNLFIVTLTN  226 (227)
T ss_dssp             ---------TTCTTCCEEEEEE
T ss_pred             ---------ccCCCCCEEEeeC
Confidence                     2367777777753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3e-15  Score=130.55  Aligned_cols=189  Identities=22%  Similarity=0.173  Sum_probs=130.7

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhh
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI  189 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i  189 (432)
                      +..+.+|+.|++.+         +.++.++ .+..+++|++|++++|.+..++ .+..+++|+++++++|. ...++ .+
T Consensus        37 ~~~l~~L~~L~l~~---------~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~-~~~i~-~l  103 (227)
T d1h6ua2          37 QADLDGITTLSAFG---------TGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNP-LKNVS-AI  103 (227)
T ss_dssp             HHHHHTCCEEECTT---------SCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred             HHHcCCcCEEECCC---------CCCCcch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccc-ccccc-cc
Confidence            56788999999999         6788884 6899999999999999998886 48999999999999987 56665 68


Q ss_pred             hcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcc
Q 037465          190 GKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQ  269 (432)
Q Consensus       190 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  269 (432)
                      ..+++|+.++++++.....  ..+...+.++.+.+..+...       ....+..+++|+.+.+.+              
T Consensus       104 ~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~--------------  160 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-------NISPLAGLTNLQYLSIGN--------------  160 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-------CCGGGGGCTTCCEEECCS--------------
T ss_pred             ccccccccccccccccccc--chhccccchhhhhchhhhhc-------hhhhhccccccccccccc--------------
Confidence            8999999999998854332  22445556666655443322       222334444555555544              


Q ss_pred             cccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCC
Q 037465          270 LYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCE  349 (432)
Q Consensus       270 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  349 (432)
                                    |.+.                ....+..+++|+.|++++|....++ .+..+++|++|++++| .++
T Consensus       161 --------------n~~~----------------~~~~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N-~lt  208 (227)
T d1h6ua2         161 --------------AQVS----------------DLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN-QIS  208 (227)
T ss_dssp             --------------SCCC----------------CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTS-CCC
T ss_pred             --------------cccc----------------cchhhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCC-cCC
Confidence                          3310                0112344556666666665555543 3677888888888888 466


Q ss_pred             CCCCCCCcc-cceEeccc
Q 037465          350 HLPPLGKLP-LEKLTLYN  366 (432)
Q Consensus       350 ~l~~~~~l~-L~~L~l~~  366 (432)
                      .++.++.++ |+.|++++
T Consensus       209 ~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         209 DVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             BCGGGTTCTTCCEEEEEE
T ss_pred             CCcccccCCCCCEEEeeC
Confidence            677777888 88888763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.5e-16  Score=140.01  Aligned_cols=186  Identities=18%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             ccCCccccEEEeCCcccc--ccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          142 VGKLIHLKYLNLSGLCIK--RLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       142 ~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                      ......|++|++++|.+.  .++..+..+++|++|++++|......+..++.+++|+.|++++|..++...         
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~---------  112 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA---------  112 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH---------
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc---------
Confidence            344567788888777754  345556677788888888776444555666677777777777764332110         


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhccc-ccccCCceEEEeeccccCCchHHHhhhh
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQL-YNQQNLLCLHLEFGRVVDGEDEERRRKK  298 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (432)
                                        ...-...+++|+.|++++|..+.+.  .....+ ..+++|+.|+++++..           .
T Consensus       113 ------------------l~~l~~~~~~L~~L~ls~c~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~-----------~  161 (284)
T d2astb2         113 ------------------LQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYRK-----------N  161 (284)
T ss_dssp             ------------------HHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCGG-----------G
T ss_pred             ------------------cchhhHHHHhccccccccccccccc--cchhhhcccccccchhhhccccc-----------c
Confidence                              0000122334444444444333221  111111 1234555555554320           0


Q ss_pred             hhhHhhhhcCCCCCCCcEEEEeeeCCCC--CChhhhccCCCcEEEEeCCCCCC--CCCCCCCcc-cceEecccc
Q 037465          299 EKDEQLLKALQPPVNVEELWIVYYGGNI--FPKWLTSLTNLRNLYLSSCFNCE--HLPPLGKLP-LEKLTLYNL  367 (432)
Q Consensus       299 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~--~l~~~~~l~-L~~L~l~~c  367 (432)
                      .....+......+++|++|++++|....  .+..+..+++|++|++++|..++  .+..++++| |+.|++++|
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            0111122222345666666666544321  24455577888888888876554  233466778 888888877

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.3e-14  Score=122.12  Aligned_cols=144  Identities=18%  Similarity=0.256  Sum_probs=79.5

Q ss_pred             CceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           61 GKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        61 ~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+++.|.+.++++..+. .+..+++|++|++++|.+     ++  ++. +..+++|++|++++         +.+..++ 
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l-----~~--~~~-l~~l~~L~~L~l~~---------n~~~~~~-  100 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL-----TD--ITP-LKNLTKLVDILMNN---------NQIADIT-  100 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-----CC--CGG-GTTCTTCCEEECCS---------SCCCCCG-
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccc-----cC--ccc-ccCCcccccccccc---------ccccccc-
Confidence            45666666666665542 355566666666666633     22  222 55666666666666         3444444 


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLR  220 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  220 (432)
                      .+.++++|++|+++++.+..++ .+..+++|+.|++++|. +..++ .+..+++|+.|++.+|.. ..++ .++.+++|+
T Consensus       101 ~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l-~~l~-~l~~l~~L~  175 (199)
T d2omxa2         101 PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQV-TDLK-PLANLTTLE  175 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCC-CCCG-GGTTCTTCC
T ss_pred             cccccccccccccccccccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccc-cCCc-cccCCCCCC
Confidence            3556666666666666554443 35556666666666665 44433 455566666666666532 2232 245566666


Q ss_pred             cccceEec
Q 037465          221 TLGKFVVG  228 (432)
Q Consensus       221 ~L~l~~~~  228 (432)
                      +|++.++.
T Consensus       176 ~L~ls~N~  183 (199)
T d2omxa2         176 RLDISSNK  183 (199)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            66665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.1e-14  Score=123.48  Aligned_cols=145  Identities=25%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhh
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGI  189 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i  189 (432)
                      +..+++|++|++++         +.++.++ .++.+++|++|++++|.++.+| .+..+++|+.|++++|. ...++ .+
T Consensus        64 l~~l~~L~~L~L~~---------n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~-~~~~~-~l  130 (210)
T d1h6ta2          64 IQYLPNVTKLFLNG---------NKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GL  130 (210)
T ss_dssp             GGGCTTCCEEECCS---------SCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC-CCCCG-GG
T ss_pred             HhhCCCCCEEeCCC---------ccccCcc-ccccCccccccccccccccccc-ccccccccccccccccc-ccccc-cc
Confidence            34444455555544         3343333 2344445555555544444444 34444455555554444 22222 34


Q ss_pred             hcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcc
Q 037465          190 GKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQ  269 (432)
Q Consensus       190 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  269 (432)
                      ..++.++.+++++|... .. ..+..+++|+++++.++...       .+..++++++|+.|+++++. +.+.     ..
T Consensus       131 ~~l~~l~~l~~~~n~l~-~~-~~~~~l~~L~~l~l~~n~l~-------~i~~l~~l~~L~~L~Ls~N~-i~~l-----~~  195 (210)
T d1h6ta2         131 VHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQIS-------DIVPLAGLTKLQNLYLSKNH-ISDL-----RA  195 (210)
T ss_dssp             GGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCC-------CCGGGTTCTTCCEEECCSSC-CCBC-----GG
T ss_pred             ccccccccccccccccc-cc-cccccccccccccccccccc-------ccccccCCCCCCEEECCCCC-CCCC-----hh
Confidence            44444555554444221 11 12334444444444444322       12224444555555554431 2211     12


Q ss_pred             cccccCCceEEEe
Q 037465          270 LYNQQNLLCLHLE  282 (432)
Q Consensus       270 l~~~~~L~~L~l~  282 (432)
                      +..+++|+.|+++
T Consensus       196 l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 LAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hcCCCCCCEEEcc
Confidence            4455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.52  E-value=1.4e-13  Score=127.55  Aligned_cols=264  Identities=17%  Similarity=0.152  Sum_probs=159.7

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      .++++.|.++++.+..+|..   ..+|+.|++.+|.++.       ++. +  .+.|++|++++         +.+..+|
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~-------l~~-l--p~~L~~L~L~~---------n~l~~lp  114 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-------LSD-L--PPLLEYLGVSN---------NQLEKLP  114 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-------CCS-C--CTTCCEEECCS---------SCCSSCC
T ss_pred             CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccch-------hhh-h--ccccccccccc---------ccccccc
Confidence            56899999999999998876   4578999999996532       121 1  24699999999         7788888


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCcc-------------
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSL-------------  206 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~-------------  206 (432)
                      . ++.+++|++|+++++.+...+...   ..+..+.+..+....  +..+..++.++.+++..+...             
T Consensus       115 ~-~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~  188 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV  188 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred             c-hhhhccceeecccccccccccccc---ccccchhhccccccc--cccccccccceecccccccccccccccccccccc
Confidence            4 688999999999999877666443   344555554443111  223455566666665554321             


Q ss_pred             ------ccCCccCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCC--CCch------hhhhccccc
Q 037465          207 ------KYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNV--SHLD------EAERLQLYN  272 (432)
Q Consensus       207 ------~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~------~~~~~~l~~  272 (432)
                            ..++ .+..++.|+.+++..+....      .+..   ..++..+.+......  ....      ......+..
T Consensus       189 ~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~------~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         189 AGNNILEELP-ELQNLPFLTTIYADNNLLKT------LPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             CCSSCCSSCC-CCTTCTTCCEEECCSSCCSS------CCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             cccccccccc-cccccccccccccccccccc------cccc---cccccccccccccccccccccccccccccccccccc
Confidence                  1122 24456677777766554332      1111   112222222221110  0000      000001111


Q ss_pred             ccC----CceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCC
Q 037465          273 QQN----LLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNC  348 (432)
Q Consensus       273 ~~~----L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  348 (432)
                      ++.    .....+..+.                  +......+++|++|++++|....+|.   .+++|+.|++++|. +
T Consensus       259 l~~l~~~~~~~~~~~~~------------------~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~-L  316 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNE------------------IRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNH-L  316 (353)
T ss_dssp             ESCCCTTCCEEECCSSC------------------CSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-C
T ss_pred             cccccchhcccccccCc------------------cccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCc-C
Confidence            111    1222222222                  22223456899999999998888885   46899999999995 5


Q ss_pred             CCCCCCCCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCCcceEEEe
Q 037465          349 EHLPPLGKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSSSSELSIE  401 (432)
Q Consensus       349 ~~l~~~~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~  401 (432)
                      +.+|.  .++ |++|++++|+ ++.+|.               .+.+|+.|.+.
T Consensus       317 ~~l~~--~~~~L~~L~L~~N~-L~~lp~---------------~~~~L~~L~~~  352 (353)
T d1jl5a_         317 AEVPE--LPQNLKQLHVEYNP-LREFPD---------------IPESVEDLRMN  352 (353)
T ss_dssp             SCCCC--CCTTCCEEECCSSC-CSSCCC---------------CCTTCCEEECC
T ss_pred             Ccccc--ccCCCCEEECcCCc-CCCCCc---------------cccccCeeECc
Confidence            56774  256 9999999998 999875               35678888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-15  Score=136.69  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcc-cc-
Q 037465           82 EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC-IK-  159 (432)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~-l~-  159 (432)
                      ...+|++|++++|.     ++...+...+..+++|++|++++|        ..-...+..+..+++|++|++++|. ++ 
T Consensus        44 ~~~~L~~LdLs~~~-----i~~~~l~~l~~~c~~L~~L~L~~~--------~l~~~~~~~l~~~~~L~~L~Ls~c~~itd  110 (284)
T d2astb2          44 SPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLEGL--------RLSDPIVNTLAKNSNLVRLNLSGCSGFSE  110 (284)
T ss_dssp             CCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECTTC--------BCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             cCCCCCEEECCCCc-----cCHHHHHHHHHhCCCccccccccc--------CCCcHHHHHHhcCCCCcCccccccccccc
Confidence            44577888887773     344435566777888888888874        2222334556677788888887764 54 


Q ss_pred             -ccchhhhccCCccEEecccccccc--cCChhhhc-ccccceEEcCCCCc-cc--cCCccCCcccccccccceEeccccc
Q 037465          160 -RLPETLCELYNLQKLDIRWCRNLR--ELPAGIGK-LMNMRSLLNDNTRS-LK--YMPIGISKLTSLRTLGKFVVGGGVD  232 (432)
Q Consensus       160 -~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~i~~-l~~L~~L~l~~~~~-~~--~~p~~l~~l~~L~~L~l~~~~~~~~  232 (432)
                       .+...+..+++|++|++++|..+.  .+...+.. .++|+.|+++++.. ..  .+......+++|++|++.++...+ 
T Consensus       111 ~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it-  189 (284)
T d2astb2         111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-  189 (284)
T ss_dssp             HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-
T ss_pred             cccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC-
Confidence             333344567778888887765332  12222333 35677777776521 11  111112345555555555443332 


Q ss_pred             CCCCcCccccccCccCCceeeCCCCCC
Q 037465          233 GSSTCRLESLKNLQLLRECGIEGLGNV  259 (432)
Q Consensus       233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  259 (432)
                         ...+..+.++++|+.|++++|..+
T Consensus       190 ---d~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         190 ---NDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             ---GGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ---chhhhhhcccCcCCEEECCCCCCC
Confidence               334444555555555555555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.5e-14  Score=124.87  Aligned_cols=61  Identities=21%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             CcEEEEeeeCCCCCChhhhccCCCcEEEEeCCCCCCCCCC--CCCcc-cceEeccccccccccCc
Q 037465          314 VEELWIVYYGGNIFPKWLTSLTNLRNLYLSSCFNCEHLPP--LGKLP-LEKLTLYNLKSVKRVGN  375 (432)
Q Consensus       314 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~l~-L~~L~l~~c~~l~~~~~  375 (432)
                      ++.+++.++....++......++++.+....++.++.+|.  +..++ |++|+|+++. ++.+|.
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             ceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            4444444444444444444556666665544445555553  56677 7777777766 666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=8e-14  Score=119.71  Aligned_cols=165  Identities=16%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ...++.+.+.++.+..++ .+.++++|++|++++|+++     +  ++. +..+++|++|++++         +.++.+|
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~-----~--l~~-~~~l~~L~~L~l~~---------n~i~~l~  106 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-----D--IKP-LANLKNLGWLFLDE---------NKVKDLS  106 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-----C--CGG-GTTCTTCCEEECCS---------SCCCCGG
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcccc-----C--ccc-cccCcccccccccc---------ccccccc
Confidence            346778888888877754 4678888888888888542     2  333 67788888888888         5677776


Q ss_pred             ccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCccccc
Q 037465          140 ENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSL  219 (432)
Q Consensus       140 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  219 (432)
                       .+..+++|+.|++++|.+..++ .+..+++|+.+++++|. +... ..+..+++|+.+++++|.. ..++. ++.+++|
T Consensus       107 -~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~-~~~~~l~~L~~l~l~~n~l-~~i~~-l~~l~~L  180 (210)
T d1h6ta2         107 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKL  180 (210)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTC
T ss_pred             -cccccccccccccccccccccc-ccccccccccccccccc-cccc-ccccccccccccccccccc-ccccc-ccCCCCC
Confidence             5777888888888888877665 57778888888888877 4443 3567788888888888854 34443 6788888


Q ss_pred             ccccceEecccccCCCCcCccccccCccCCceeeCC
Q 037465          220 RTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEG  255 (432)
Q Consensus       220 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  255 (432)
                      ++|+++++...       .++.+..+++|+.|++++
T Consensus       181 ~~L~Ls~N~i~-------~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHIS-------DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCC-------BCGGGTTCTTCSEEEEEE
T ss_pred             CEEECCCCCCC-------CChhhcCCCCCCEEEccC
Confidence            88888877554       234577788888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=9.8e-14  Score=118.11  Aligned_cols=163  Identities=23%  Similarity=0.244  Sum_probs=120.9

Q ss_pred             cccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR  160 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~  160 (432)
                      .+++++++|+++++.+++       +.. +..+++|++|++++         +.++.++. ++++++|++|++++|.+..
T Consensus        37 ~~l~~l~~L~l~~~~i~~-------l~~-l~~l~nL~~L~Ls~---------N~l~~~~~-l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-------IDG-VEYLNNLTQINFSN---------NQLTDITP-LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCS---------SCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HHhcCCCEEECCCCCCCC-------ccc-cccCCCcCcCcccc---------ccccCccc-ccCCccccccccccccccc
Confidence            567889999999996532       333 77899999999999         66777754 8889999999999999888


Q ss_pred             cchhhhccCCccEEecccccccccCChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCcc
Q 037465          161 LPETLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLE  240 (432)
Q Consensus       161 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  240 (432)
                      ++ .+..+++|+.|++++|. ...+ ..+..+++|+.|++++|.. ..++ .+..+++|+.|++.++...       .+.
T Consensus        99 ~~-~l~~l~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~l~~n~l-~~~~-~l~~~~~L~~L~l~~n~l~-------~l~  166 (199)
T d2omxa2          99 IT-PLANLTNLTGLTLFNNQ-ITDI-DPLKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLNFSSNQVT-------DLK  166 (199)
T ss_dssp             CG-GGTTCTTCSEEECCSSC-CCCC-GGGTTCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCC-------CCG
T ss_pred             cc-ccccccccccccccccc-cccc-cccchhhhhHHhhhhhhhh-cccc-ccccccccccccccccccc-------CCc
Confidence            87 57889999999999887 4333 3577889999999998853 4443 4778888999888877554       234


Q ss_pred             ccccCccCCceeeCCCCCCCCchhhhhcccccccCCceE
Q 037465          241 SLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCL  279 (432)
Q Consensus       241 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L  279 (432)
                      .++++++|+.|+++++. +.+.     ..+..+++|++|
T Consensus       167 ~l~~l~~L~~L~ls~N~-i~~i-----~~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNK-VSDI-----SVLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSC-CCCC-----GGGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCC-CCCC-----ccccCCCCCCcC
Confidence            57778888888888753 3332     235566666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.7e-13  Score=111.00  Aligned_cols=129  Identities=22%  Similarity=0.126  Sum_probs=94.2

Q ss_pred             cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccc
Q 037465           79 SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCI  158 (432)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l  158 (432)
                      .+.++.++|+|++++|+++.       ++..+..+++|++|++++         +.+..++ .+..+++|++|++++|.+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-------i~~~~~~l~~L~~L~Ls~---------N~i~~l~-~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-------IENLGATLDQFDAIDFSD---------NEIRKLD-GFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-------CCCGGGGTTCCSEEECCS---------SCCCEEC-CCCCCSSCCEEECCSSCC
T ss_pred             hccCcCcCcEEECCCCCCCc-------cCccccccccCCEEECCC---------CCCCccC-CcccCcchhhhhcccccc
Confidence            35677788889988886533       344467788889999988         6677774 577888899999999888


Q ss_pred             cccchh-hhccCCccEEecccccccccCCh--hhhcccccceEEcCCCCccccCC----ccCCcccccccccceE
Q 037465          159 KRLPET-LCELYNLQKLDIRWCRNLRELPA--GIGKLMNMRSLLNDNTRSLKYMP----IGISKLTSLRTLGKFV  226 (432)
Q Consensus       159 ~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L~l~~  226 (432)
                      ..+|+. +..+++|++|++++|. +..++.  .+..+++|++|++++|+. ...|    ..+..+++|+.|+...
T Consensus        76 ~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          76 CRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cCCCccccccccccccceecccc-ccccccccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeCCCC
Confidence            888764 4568889999998887 555543  467788888888888854 3333    2356677777777544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5e-13  Score=104.06  Aligned_cols=99  Identities=20%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             cEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhh
Q 037465           87 RSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLC  166 (432)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~  166 (432)
                      |+|++++|+++.       ++. +..+++|++|++++         +.++.+|+.++.+++|++|++++|.++.+| .+.
T Consensus         1 R~L~Ls~n~l~~-------l~~-l~~l~~L~~L~ls~---------N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~   62 (124)
T d1dcea3           1 RVLHLAHKDLTV-------LCH-LEQLLLVTHLDLSH---------NRLRALPPALAALRCLEVLQASDNALENVD-GVA   62 (124)
T ss_dssp             SEEECTTSCCSS-------CCC-GGGGTTCCEEECCS---------SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred             CEEEcCCCCCCC-------Ccc-cccCCCCCEEECCC---------CccCcchhhhhhhhcccccccccccccccC-ccc
Confidence            456666664321       222 55566666666666         556666655666666666666666666664 356


Q ss_pred             ccCCccEEecccccccccCC--hhhhcccccceEEcCCCC
Q 037465          167 ELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTR  204 (432)
Q Consensus       167 ~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~  204 (432)
                      .+++|++|++++|. +..++  ..++.+++|+.|++++|+
T Consensus        63 ~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          63 NLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             TCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cccccCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCc
Confidence            66666666666665 43333  235556666666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-12  Score=106.86  Aligned_cols=124  Identities=23%  Similarity=0.182  Sum_probs=104.7

Q ss_pred             CCceEEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC
Q 037465           60 GGKVRHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP  139 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp  139 (432)
                      ..+++.|++.++.+..++..+..+++|++|++++|.++.       ++. +..+++|++|++++         +.+..+|
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-------l~~-~~~l~~L~~L~ls~---------N~i~~l~   79 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-------LDG-FPLLRRLKTLLVNN---------NRICRIG   79 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-------ECC-CCCCSSCCEEECCS---------SCCCEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-------cCC-cccCcchhhhhccc---------ccccCCC
Confidence            557899999999999998777889999999999997643       333 78899999999999         6788887


Q ss_pred             ccc-cCCccccEEEeCCccccccch--hhhccCCccEEecccccccccCCh----hhhcccccceEEcC
Q 037465          140 ENV-GKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPA----GIGKLMNMRSLLND  201 (432)
Q Consensus       140 ~~~-~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~l~  201 (432)
                      ..+ ..+++|+.|++++|.+..++.  .+..+++|++|++++|. +...|.    .+..+++|+.|+..
T Consensus        80 ~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          80 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            654 579999999999999987764  67889999999999998 666664    47789999999754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=2.8e-12  Score=99.73  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=94.1

Q ss_pred             EEEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCcccc
Q 037465           64 RHLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVG  143 (432)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~  143 (432)
                      |.|+++++.+..++ .+.++++|++|++++|+++      . +|..+..+++|++|++++         +.++.+| .+.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~------~-lp~~~~~l~~L~~L~l~~---------N~i~~l~-~~~   62 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR------A-LPPALAALRCLEVLQASD---------NALENVD-GVA   62 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC------C-CCGGGGGCTTCCEEECCS---------SCCCCCG-GGT
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC------c-chhhhhhhhccccccccc---------ccccccC-ccc
Confidence            46889999998876 4899999999999999653      2 455589999999999999         7788886 589


Q ss_pred             CCccccEEEeCCccccccc--hhhhccCCccEEeccccccc--ccCChh-hhcccccceE
Q 037465          144 KLIHLKYLNLSGLCIKRLP--ETLCELYNLQKLDIRWCRNL--RELPAG-IGKLMNMRSL  198 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~--~~lp~~-i~~l~~L~~L  198 (432)
                      .+++|++|++++|.+..+|  ..+..+++|++|++++|...  ...+.. +..+++|+.|
T Consensus        63 ~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999999999998776  36889999999999999832  222333 3456777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=2.2e-12  Score=108.93  Aligned_cols=126  Identities=21%  Similarity=0.208  Sum_probs=101.7

Q ss_pred             EEEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-Ccccc
Q 037465           65 HLGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVG  143 (432)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~  143 (432)
                      .+..++.++..+|..+.  +++++|++++|++     +....+..|..+++|+.|++++         +.+..+ +..+.
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i-----~~~~~~~~f~~l~~L~~L~L~~---------N~i~~~~~~~~~   75 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNEL-----GRISSDGLFGRLPHLVKLELKR---------NQLTGIEPNAFE   75 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCC-----CSBCCSCSGGGCTTCCEEECCS---------SCCCCBCTTTTT
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCC-----cccccccccCCCceEeeeeccc---------cccccccccccc
Confidence            46777888888888764  6899999999954     4333455588999999999999         556665 56778


Q ss_pred             CCccccEEEeCCccccccch-hhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccc
Q 037465          144 KLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLK  207 (432)
Q Consensus       144 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~  207 (432)
                      .+++|++|++++|.+..+|+ .+..+++|++|+|++|. +..+|. .+..+++|++|++++|+...
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccceeeeccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccccc
Confidence            89999999999999998876 57889999999999998 665554 46789999999999986543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.6e-12  Score=110.42  Aligned_cols=200  Identities=18%  Similarity=0.110  Sum_probs=126.0

Q ss_pred             CCceEEEEeecCCCCCCCc-cccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc
Q 037465           60 GGKVRHLGLNFEGGAPLPM-SFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI  138 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  138 (432)
                      ...++.|++.++.+..++. +|.++++|++|++++|.     +...+.+..|..++.++++.+..+        +.+..+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~-----~~~~i~~~~f~~l~~l~~l~~~~~--------n~l~~~   94 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-----VLEVIEADVFSNLPKLHEIRIEKA--------NNLLYI   94 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT-----TCCEECSSSEESCTTCCEEEEECC--------TTCCEE
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhcccc-----ccceeecccccccccccccccccc--------cccccc
Confidence            4578999999999888766 67889999999999994     334334445788999999988765        555555


Q ss_pred             -CccccCCccccEEEeCCccccccch--hhhccCCccEEecccccccccCCh-hhhcc-cccceEEcCCCCccccCCccC
Q 037465          139 -PENVGKLIHLKYLNLSGLCIKRLPE--TLCELYNLQKLDIRWCRNLRELPA-GIGKL-MNMRSLLNDNTRSLKYMPIGI  213 (432)
Q Consensus       139 -p~~~~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l-~~L~~L~l~~~~~~~~~p~~l  213 (432)
                       +..+.++++|++++++++.+...+.  .+..+..+..+...++. +..++. .+..+ ..++.|++.++.. ..++...
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n~l-~~i~~~~  172 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNGI-QEIHNCA  172 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSCC-CEECTTT
T ss_pred             ccccccccccccccccchhhhcccccccccccccccccccccccc-cccccccccccccccceeeecccccc-ccccccc
Confidence             5567889999999999998876653  23344455554444444 444432 23334 3677888887744 4455444


Q ss_pred             Cccccccccc-ceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEee
Q 037465          214 SKLTSLRTLG-KFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEF  283 (432)
Q Consensus       214 ~~l~~L~~L~-l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  283 (432)
                      ...++++.+. +.++...     ......+.++++|+.|++++.. +...+   ...+..+++|+.+++..
T Consensus       173 ~~~~~l~~~~~l~~n~l~-----~l~~~~f~~l~~L~~L~Ls~N~-l~~l~---~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         173 FNGTQLDELNLSDNNNLE-----ELPNDVFHGASGPVILDISRTR-IHSLP---SYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTCCEEEEECTTCTTCC-----CCCTTTTTTSCCCSEEECTTSC-CCCCC---SSSCTTCCEEESSSEES
T ss_pred             ccchhhhccccccccccc-----cccHHHhcCCCCCCEEECCCCc-CCccC---HHHHcCCcccccCcCCC
Confidence            4455554443 3333222     1123346778888888887743 22221   23455666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1e-13  Score=117.68  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             eEEEEeec--CCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCc
Q 037465           63 VRHLGLNF--EGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPE  140 (432)
Q Consensus        63 i~~L~l~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~  140 (432)
                      .+.+++.+  ..++.++..+..+++|+.|++++|+++.       ++. +..+++|++|++++         +.++.+|.
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-------i~~-l~~l~~L~~L~Ls~---------N~i~~i~~   87 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-------ISS-LSGMENLRILSLGR---------NLIKKIEN   87 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-------CCC-HHHHTTCCEEECCE---------EEECSCSS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC-------ccc-ccCCccccChhhcc---------cccccccc
Confidence            34445443  3466677788888999999999886532       333 77888999999988         67778876


Q ss_pred             cccCCccccEEEeCCccccccchhhhccCCccEEecccccccccCC--hhhhcccccceEEcCCCCcc
Q 037465          141 NVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLRELP--AGIGKLMNMRSLLNDNTRSL  206 (432)
Q Consensus       141 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~  206 (432)
                      ....++.|++|++++|.++.++ .+..+++|++|++++|. +..++  ..+..+++|+.|++++|+..
T Consensus        88 ~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          88 LDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccccccccccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCccc
Confidence            5566678899999998888875 57888889999999887 55554  34678888999998888543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.4e-14  Score=134.21  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             ceEEEEeecCCCCC--CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc--
Q 037465           62 KVRHLGLNFEGGAP--LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE--  137 (432)
Q Consensus        62 ~i~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~--  137 (432)
                      +++.|+++++.+..  +...+..++++++|++++|.++...+ .. +...+..+++|++|+|++         +.++.  
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~-~~-l~~~L~~~~~L~~LdLs~---------N~i~~~~   71 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-KD-ISSALRVNPALAELNLRS---------NELGDVG   71 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH-HH-HHHHHHTCTTCCEEECTT---------CCCHHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHH-HH-HHHHHhcCCCCCEEECcC---------CcCChHH
Confidence            57889998888876  34456678889999999995432111 11 345578889999999998         44532  


Q ss_pred             ---cCccccC-CccccEEEeCCccccc-----cchhhhccCCccEEeccccc
Q 037465          138 ---IPENVGK-LIHLKYLNLSGLCIKR-----LPETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       138 ---lp~~~~~-l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~  180 (432)
                         +...+.. ...|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        72 ~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          72 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence               2223322 3479999999998763     45567778899999998876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.20  E-value=9.4e-13  Score=121.94  Aligned_cols=208  Identities=16%  Similarity=0.056  Sum_probs=104.8

Q ss_pred             CCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCC--CCCCCCcccccCccccCCccccEEEe
Q 037465           76 LPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSF--SHPGPNLITEIPENVGKLIHLKYLNL  153 (432)
Q Consensus        76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~~~~~~~~~lp~~~~~l~~L~~L~L  153 (432)
                      +...+.+.+.|+.|++++|.+....+  ..+...+...++|+.|+++++..-  .+..+.....+...+...++|+.|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~--~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHH--HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            55566778888888888885422111  113344667788888888874210  00000001112334556778888888


Q ss_pred             CCccccc-----cchhhhccCCccEEecccccccccCChh-------------hhcccccceEEcCCCCccc----cCCc
Q 037465          154 SGLCIKR-----LPETLCELYNLQKLDIRWCRNLRELPAG-------------IGKLMNMRSLLNDNTRSLK----YMPI  211 (432)
Q Consensus       154 ~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~-------------i~~l~~L~~L~l~~~~~~~----~~p~  211 (432)
                      ++|.+..     +...+...++|++|++++|.....-...             ....+.|+.+.++++....    .+..
T Consensus       101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence            8887652     4445566788888888877632111001             1234566777776663321    1222


Q ss_pred             cCCcccccccccceEecccccCCCCcCccccccCccCCceeeCCCCCCCCchhhhhcccccccCCceEEEeecc
Q 037465          212 GISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQLLRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGR  285 (432)
Q Consensus       212 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  285 (432)
                      .+..+++|+.|++..+..............+..+++|+.|++++..-...........+..+++|++|++++|.
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            23345556666665544332000000122344455556665554321111112233444555566666665555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=5.5e-11  Score=100.04  Aligned_cols=108  Identities=23%  Similarity=0.155  Sum_probs=92.0

Q ss_pred             CCceEEEEeecCCCCC-C-CccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccc
Q 037465           60 GGKVRHLGLNFEGGAP-L-PMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITE  137 (432)
Q Consensus        60 ~~~i~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  137 (432)
                      +..++.|.++++.+.. + +..|.++++|+.|++++|.+     ... .+..+..+++|++|++++         +.++.
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i-----~~~-~~~~~~~~~~L~~L~Ls~---------N~l~~   92 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-----TGI-EPNAFEGASHIQELQLGE---------NKIKE   92 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-----CCB-CTTTTTTCTTCCEEECCS---------CCCCE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccc-----ccc-cccccccccccceeeecc---------ccccc
Confidence            5689999999999975 3 45678999999999999954     333 556689999999999999         78888


Q ss_pred             cC-ccccCCccccEEEeCCccccccch-hhhccCCccEEeccccccc
Q 037465          138 IP-ENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCRNL  182 (432)
Q Consensus       138 lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~  182 (432)
                      +| ..|.++++|++|+|++|.|..+|+ .+..+++|++|++++|...
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            85 467899999999999999999876 5788999999999999843

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=1.7e-12  Score=109.85  Aligned_cols=112  Identities=24%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             chhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccccchhhhccCCccEEecccccccccC
Q 037465          106 LPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCRNLREL  185 (432)
Q Consensus       106 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l  185 (432)
                      ++..+..+++|++|++++         +.++.++ .+..+++|++|++++|.++.+|.....+++|++|++++|. +..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~---------n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l  108 (198)
T d1m9la_          40 MDATLSTLKACKHLALST---------NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL  108 (198)
T ss_dssp             CHHHHHHTTTCCEEECSE---------EEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCH
T ss_pred             hhhHHhcccccceeECcc---------cCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc-cccc
Confidence            445577788888888887         6677775 4777788888888888877777655666678888888776 5555


Q ss_pred             ChhhhcccccceEEcCCCCccccCC--ccCCcccccccccceEeccc
Q 037465          186 PAGIGKLMNMRSLLNDNTRSLKYMP--IGISKLTSLRTLGKFVVGGG  230 (432)
Q Consensus       186 p~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~  230 (432)
                      + .+..+++|+.|++++|.. ..++  ..+..+++|+.|++.+|...
T Consensus       109 ~-~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         109 S-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             H-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             c-cccccccccccccccchh-ccccccccccCCCccceeecCCCccc
Confidence            3 467777888888877743 3333  34567777777777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.3e-12  Score=123.55  Aligned_cols=113  Identities=19%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             CcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCccccc---
Q 037465           84 DRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIKR---  160 (432)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~---  160 (432)
                      .+|++|++++++     +++..+...+..++++++|+|++|+ +++   .....++..+..+++|++|+|++|.++.   
T Consensus         2 ~~l~~ld~~~~~-----i~~~~~~~l~~~l~~l~~L~L~~~~-i~~---~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~   72 (460)
T d1z7xw1           2 LDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCG-LTE---ARCKDISSALRVNPALAELNLRSNELGDVGV   72 (460)
T ss_dssp             EEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSC-CCH---HHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CCCCEEEeeCCc-----CChHHHHHHHHhCCCCCEEEeCCCC-CCH---HHHHHHHHHHhcCCCCCEEECcCCcCChHHH
Confidence            368999999995     4454456668889999999999963 221   2233456667889999999999998762   


Q ss_pred             --cchhhh-ccCCccEEeccccccccc----CChhhhcccccceEEcCCCCc
Q 037465          161 --LPETLC-ELYNLQKLDIRWCRNLRE----LPAGIGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       161 --lp~~i~-~l~~L~~L~l~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~  205 (432)
                        +...+. ...+|++|++++|.....    ++..+..+++|++|++++|..
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence              222222 235799999999984322    445567789999999999854

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.98  E-value=2.3e-11  Score=112.43  Aligned_cols=256  Identities=16%  Similarity=0.069  Sum_probs=131.3

Q ss_pred             hhhccCCcceEEEeCCCCCCCCCCCCccc-----ccCccccCCccccEEEeCCccccc-----------cchhhhccCCc
Q 037465          108 ELFSKLACLRALVISQSSSFSHPGPNLIT-----EIPENVGKLIHLKYLNLSGLCIKR-----------LPETLCELYNL  171 (432)
Q Consensus       108 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~~-----------lp~~i~~l~~L  171 (432)
                      ..+..+..|+.|+|++         +.++     .+...+...++|+.++++++....           +...+..+++|
T Consensus        25 ~~L~~~~~l~~L~Ls~---------n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSG---------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             HHHHHCSCCCEEECTT---------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHhhCCCCCEEECcC---------CcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence            3477789999999998         4443     344556778899999998775332           22335567889


Q ss_pred             cEEeccccccccc----CChhhhcccccceEEcCCCCccccCCccCCcccccccccceEecccccCCCCcCccccccCcc
Q 037465          172 QKLDIRWCRNLRE----LPAGIGKLMNMRSLLNDNTRSLKYMPIGISKLTSLRTLGKFVVGGGVDGSSTCRLESLKNLQL  247 (432)
Q Consensus       172 ~~L~l~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~  247 (432)
                      +.|++++|.....    +...+..+++|++|++++|.........+.  ..+..+..              .......+.
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~~l~~~~~--------------~~~~~~~~~  159 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELAV--------------NKKAKNAPP  159 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--HHHHHHHH--------------HHHHHTCCC
T ss_pred             ccccccccccccccccchhhhhcccccchheeccccccccccccccc--cccccccc--------------ccccccCcc
Confidence            9999998873332    333455678899999988853221111110  00111100              001112334


Q ss_pred             CCceeeCCCCCCCCchhhhhcccccccCCceEEEeeccccCCchHHHhhhhhhhHhhhhcCCCCCCCcEEEEeeeCCCC-
Q 037465          248 LRECGIEGLGNVSHLDEAERLQLYNQQNLLCLHLEFGRVVDGEDEERRRKKEKDEQLLKALQPPVNVEELWIVYYGGNI-  326 (432)
Q Consensus       248 L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-  326 (432)
                      |+.+.+++..-.......+...+..++.|+.|++++|.+.+..         ....+...+...++|+.|++++|.... 
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g---------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  230 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG---------IEHLLLEGLAYCQELKVLDLQDNTFTHL  230 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH---------HHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccc---------cccchhhhhcchhhhccccccccccccc
Confidence            4444444422111111223334455566666666666521100         011123345556667777666654322 


Q ss_pred             ----CChhhhccCCCcEEEEeCCCCCCC-CCC----C--CCcc-cceEeccccccccccCccccCCCCCCCCCCCCCCCC
Q 037465          327 ----FPKWLTSLTNLRNLYLSSCFNCEH-LPP----L--GKLP-LEKLTLYNLKSVKRVGNEFLGIEESSEDDPSSSSSS  394 (432)
Q Consensus       327 ----~~~~l~~l~~L~~L~l~~~~~~~~-l~~----~--~~l~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  394 (432)
                          +...+..+++|++|++++|..... ...    +  ...+ |++|++++|. ++.-+...+....      ....++
T Consensus       231 g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l------~~~~~~  303 (344)
T d2ca6a1         231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI------DEKMPD  303 (344)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH------HHHCTT
T ss_pred             ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHH------HccCCC
Confidence                233445667777777777743221 111    1  1235 7777777765 4443221111100      002456


Q ss_pred             cceEEEeCCc
Q 037465          395 SSELSIEGCP  404 (432)
Q Consensus       395 L~~L~i~~cp  404 (432)
                      |+.|+++++.
T Consensus       304 L~~L~l~~N~  313 (344)
T d2ca6a1         304 LLFLELNGNR  313 (344)
T ss_dssp             CCEEECTTSB
T ss_pred             CCEEECCCCc
Confidence            7777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-09  Score=87.22  Aligned_cols=101  Identities=21%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             EEeecCCCCCCCccccccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCccccc-CccccC
Q 037465           66 LGLNFEGGAPLPMSFFEFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEI-PENVGK  144 (432)
Q Consensus        66 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-p~~~~~  144 (432)
                      +...+.+....|..+..+++|+.|++.++.    .+ ..+.+..|..+++|+.|++++         +.+..+ |..|..
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~----~l-~~i~~~~f~~l~~L~~L~Ls~---------N~l~~i~~~~f~~   78 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQ----HL-QHLELRDLRGLGELRNLTIVK---------SGLRFVAPDAFHF   78 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCS----SC-CEECGGGSCSCCCCSEEECCS---------SCCCEECTTGGGS
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCc----cc-cccCchhhccccccCcceeec---------cccCCcccccccc
Confidence            344444444455555555556666555442    11 222333355555666666655         445555 333555


Q ss_pred             CccccEEEeCCccccccchhhhccCCccEEeccccc
Q 037465          145 LIHLKYLNLSGLCIKRLPETLCELYNLQKLDIRWCR  180 (432)
Q Consensus       145 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~  180 (432)
                      +++|++|+|++|.++.+|..+....+|++|++++|.
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             cccccceeccCCCCcccChhhhccccccccccCCCc
Confidence            556666666665555555544444455555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.4e-09  Score=85.43  Aligned_cols=108  Identities=11%  Similarity=0.083  Sum_probs=82.2

Q ss_pred             ccCcccEEEEecCCcCccCccCCcchhhhccCCcceEEEeCCCCCCCCCCCCcccccC-ccccCCccccEEEeCCccccc
Q 037465           82 EFDRLRSLLIYDESLSNLSLNGSILPELFSKLACLRALVISQSSSFSHPGPNLITEIP-ENVGKLIHLKYLNLSGLCIKR  160 (432)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~  160 (432)
                      .+....+++.+++.     ...  .+..+..+++|+.|+++++        +.++.++ ..|.++++|+.|++++|+|+.
T Consensus         6 ~c~~~~~l~c~~~~-----~~~--~p~~l~~l~~l~~L~l~~n--------~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~   70 (156)
T d2ifga3           6 CPHGSSGLRCTRDG-----ALD--SLHHLPGAENLTELYIENQ--------QHLQHLELRDLRGLGELRNLTIVKSGLRF   70 (156)
T ss_dssp             CCSSSSCEECCSSC-----CCT--TTTTSCSCSCCSEEECCSC--------SSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred             CcCCCCeEEecCCC-----Ccc--CcccccCccccCeeecCCC--------ccccccCchhhccccccCcceeeccccCC
Confidence            34455667777663     222  3344778889999999764        5688885 457889999999999999988


Q ss_pred             cch-hhhccCCccEEecccccccccCChhhhcccccceEEcCCCCc
Q 037465          161 LPE-TLCELYNLQKLDIRWCRNLRELPAGIGKLMNMRSLLNDNTRS  205 (432)
Q Consensus       161 lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~  205 (432)
                      +++ .+..+++|++|+|++|. +..+|..+....+|+.|++++|+.
T Consensus        71 i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          71 VAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             ECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccccccccccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence            854 57889999999999998 778887777667899999988854

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.9e-07  Score=75.39  Aligned_cols=62  Identities=27%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCccccc---CccccCCccccEEEeCCccccccch-hhhccCCccEEeccccc
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEI---PENVGKLIHLKYLNLSGLCIKRLPE-TLCELYNLQKLDIRWCR  180 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~  180 (432)
                      +..+++|++|++++         |.++.+   +..+..+++|++|++++|.++.++. ......+|+.|++++|+
T Consensus        61 ~~~~~~L~~L~Ls~---------N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          61 EENIPELLSLNLSN---------NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHCTTCCCCCCCS---------SCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HHhCCCCCEeeCCC---------ccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            34455566666655         333333   2233445555555555555555443 11222345555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.2e-06  Score=68.89  Aligned_cols=90  Identities=18%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             ccccCccccCCccccEEEeCCccccccc---hhhhccCCccEEecccccccccCCh-hhhcccccceEEcCCCCccccCC
Q 037465          135 ITEIPENVGKLIHLKYLNLSGLCIKRLP---ETLCELYNLQKLDIRWCRNLRELPA-GIGKLMNMRSLLNDNTRSLKYMP  210 (432)
Q Consensus       135 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p  210 (432)
                      ...++.....+++|++|++++|.|+.++   ..+..+++|+.|++++|. +..++. ...+..+|+.|++.+|+......
T Consensus        54 ~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          54 AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcc
Confidence            3333334456899999999999988654   457789999999999998 666654 22345678999999997654332


Q ss_pred             -------ccCCcccccccccce
Q 037465          211 -------IGISKLTSLRTLGKF  225 (432)
Q Consensus       211 -------~~l~~l~~L~~L~l~  225 (432)
                             ..+..+++|+.||-.
T Consensus       133 ~~~~y~~~i~~~~P~L~~LDg~  154 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLDGH  154 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEETTE
T ss_pred             cchhHHHHHHHHCCCCCEECcC
Confidence                   225678899988743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=1.3e-05  Score=64.51  Aligned_cols=14  Identities=0%  Similarity=0.078  Sum_probs=6.8

Q ss_pred             hccCCcceEEEeCC
Q 037465          110 FSKLACLRALVISQ  123 (432)
Q Consensus       110 ~~~l~~L~~L~L~~  123 (432)
                      +...++|+.|++++
T Consensus        40 L~~n~~L~~L~Ls~   53 (167)
T d1pgva_          40 ACNSKHIEKFSLAN   53 (167)
T ss_dssp             HTTCSCCCEEECTT
T ss_pred             HhhCCccceeeccc
Confidence            34444455555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.30  E-value=8.2e-05  Score=59.63  Aligned_cols=114  Identities=19%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             hccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcccc-----ccchhhhccCCccEEeccccccccc
Q 037465          110 FSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLCIK-----RLPETLCELYNLQKLDIRWCRNLRE  184 (432)
Q Consensus       110 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~  184 (432)
                      ....+.|++|+|+++..+++   ..+..+...+...+.|++|++++|.++     .+...+...+.|++|++++|.+...
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~---~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSK---ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCH---HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HhCCCCCcEEEeCCCCCCCH---HHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            34456677777765311111   111223334555666777777777654     3333455566677777777763221


Q ss_pred             ----CChhhhcccccceEEcCCCCccc-------cCCccCCcccccccccceE
Q 037465          185 ----LPAGIGKLMNMRSLLNDNTRSLK-------YMPIGISKLTSLRTLGKFV  226 (432)
Q Consensus       185 ----lp~~i~~l~~L~~L~l~~~~~~~-------~~p~~l~~l~~L~~L~l~~  226 (432)
                          +...+...+.|++|+++++....       .+...+...++|+.|++..
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence                22223445667777776653211       1223344455666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=4.3e-05  Score=61.27  Aligned_cols=16  Identities=13%  Similarity=0.046  Sum_probs=7.1

Q ss_pred             cCCccccEEEeCCccc
Q 037465          143 GKLIHLKYLNLSGLCI  158 (432)
Q Consensus       143 ~~l~~L~~L~L~~~~l  158 (432)
                      ...++|+.|++++|.+
T Consensus        43 ~~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TTCCSCCEEECTTSCC
T ss_pred             hcCCccCeeeccCCcc
Confidence            3344444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.74  E-value=0.00053  Score=54.60  Aligned_cols=115  Identities=17%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             cccCcccEEEEecCCcCccCccCCc---chhhhccCCcceEEEeCCCCCCCCCCCCcccccCccccCCccccEEEeCCcc
Q 037465           81 FEFDRLRSLLIYDESLSNLSLNGSI---LPELFSKLACLRALVISQSSSFSHPGPNLITEIPENVGKLIHLKYLNLSGLC  157 (432)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~~~  157 (432)
                      .+.+.|+.|+++++.    .++...   +...+..+++|+.|++++|.. ++   .....+...+...+.++.+++++|.
T Consensus        14 ~~~~~L~~L~L~~~~----~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l-~~---~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIM----NIPVPTLKACAEALKTNTYVKKFSIVGTRS-ND---PVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCT----TCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CH---HHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCC----CCCHHHHHHHHHHHhcCCccCeeeccCCcc-cH---HHHHHHHHHHhhcccchhhhhcccc
Confidence            456788888888742    222222   333356788888888888421 00   1112233445566788888888887


Q ss_pred             cc-----ccchhhhccCCccEEecccc--cccc----cCChhhhcccccceEEcCCC
Q 037465          158 IK-----RLPETLCELYNLQKLDIRWC--RNLR----ELPAGIGKLMNMRSLLNDNT  203 (432)
Q Consensus       158 l~-----~lp~~i~~l~~L~~L~l~~~--~~~~----~lp~~i~~l~~L~~L~l~~~  203 (432)
                      +.     .+...+...++|+.++|+.+  ....    .+...+...++|+.|++..+
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            64     34456667777887666533  3211    23344556777888877655