Citrus Sinensis ID: 037470

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
ccccccccEEEEEcccccEEccccccccccEEEcccccccccccccccHHHHcccccccccccccccccccccccEEEEccccccccccEEEccccccccccccHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHcccccEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEcccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccEEHHHHHcccccccccEEEHHHHccccccccccccc
cccccccccEEEEEcccEEEEEEcccccccEEEEccEEccccccEEEccccccccccEEccccccEEEEccccccccccHHHHHHcccEEEEEccccccEEccHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHccccHEEHEEHccccHEEEEHHcccccEEEEEcccccccEEEEEcccccHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccEEEEccHHHHcHHHHccHHHHcccccccHHcccccccccHHHHHHHHHHcccHHHHHHHHHEEEcccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
MYGGDEVSAIVIDLGshtckagyagedapkavfpsvvgaidqmdiddsanaernsgsaidsknnvdsnkgkgkrklyvgtqslgfrrdhmevlsplkdgvvvdwdIVDSIWDHAFRECllidpkehpmllaepssntqqqresSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVvdcgggsttvapvhdgyvlqkgvttspiggefLTNCLMKSleskgitikprysfkrkenrpgefqivdldfpnttesYKLYCQRVIASdikecvcrapdtpydesaysnipmtpyelpdgqvieigadrfktpdvlfnpslvqtipgmenfaenipfrglpqmVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVssgnaterRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANaernsgsaidsknnvdsnkgkgkrklyvgtqslgfrrdhmevlsplkdgvvVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSleskgitikprysfkrkenrpgefqivdldfpntTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDlleespqaarvkvvssgnaterrfSVWIGGSILASLGSFQQMWFSKSEYeehgasyiqrkcp
MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGvvvdwdivdsiwdHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQlkerlekdlleeSPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
******VSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID**********************************LYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDP*********************AFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKR***RPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGT********************************TERRFSVWIGGSILASLGSFQQMWFSK****************
MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMD*************************GKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPD****************ELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGM******IPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLA************SAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSE**************
*****EVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
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MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
Q84M92441 Actin-related protein 4 O yes no 0.973 0.981 0.737 0.0
Q6ZJW9443 Actin-related protein 4 O yes no 0.988 0.993 0.705 1e-177
A2YR10443 Actin-related protein 4 O N/A no 0.988 0.993 0.705 1e-177
Q4R333429 Actin-like protein 6A OS= N/A no 0.941 0.976 0.383 1e-87
O96019429 Actin-like protein 6A OS= yes no 0.941 0.976 0.383 2e-87
Q9Z2N8429 Actin-like protein 6A OS= yes no 0.941 0.976 0.383 3e-87
O94805426 Actin-like protein 6B OS= no no 0.937 0.978 0.366 1e-81
P86173426 Actin-like protein 6B OS= no no 0.937 0.978 0.364 6e-80
Q99MR0426 Actin-like protein 6B OS= no no 0.937 0.978 0.364 6e-80
A4FUX8426 Actin-like protein 6B OS= no no 0.937 0.978 0.364 6e-80
>sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1 Back     alignment and function desciption
 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/453 (73%), Positives = 381/453 (84%), Gaps = 20/453 (4%)

Query: 1   MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID---QMDID-DSANAERNSG 56
           MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSV+GA+D    MD+D DS     NS 
Sbjct: 1   MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSE 60

Query: 57  SAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFR 116
              DSK   +S K K KRKLYVG+Q++ +RRDHMEVLSP+KDG+V DWD+VD+IW+HAF+
Sbjct: 61  ---DSKT--ESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFK 115

Query: 117 ECLLIDPKEHPMLLAEPSSNTQQQRESSA---FSFWVCVCGILVFCPVIEFDALVLTSFA 173
            CL+IDP EHPMLLAEP  NTQQQRE +A   F  +      +   PV       LTSFA
Sbjct: 116 SCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPV-------LTSFA 168

Query: 174 LGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRY 233
            GRATSLVVDCGGGSTT++PVHDGYVLQK V +SP+GGEFLT+CL+KSLESKGI I+PRY
Sbjct: 169 TGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRY 228

Query: 234 SFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPM 293
           SFKRKE R GEFQ+ D+D P+TTESYKL+CQR+I  DIK+ +CR PDTPYD+ +YSNIP 
Sbjct: 229 SFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPT 288

Query: 294 TPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIP-FRGLPQMVIDSINKC 352
           T YELPDGQ +EIGADRFK PDV+FNPS+VQTIPGME +AE IP  RGLP MV++SINKC
Sbjct: 289 TSYELPDGQTLEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKC 348

Query: 353 DVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIG 412
           DVDIRREL+SSILLAGGT+SMQQLKERLEKDL+EESP +ARVKV++SGN TERRFSVWIG
Sbjct: 349 DVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIG 408

Query: 413 GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
           GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
Sbjct: 409 GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1 Back     alignment and function description
>sp|A2YR10|ARP4_ORYSI Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2 Back     alignment and function description
>sp|Q4R333|ACL6A_MACFA Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1 Back     alignment and function description
>sp|O96019|ACL6A_HUMAN Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2N8|ACL6A_MOUSE Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2 Back     alignment and function description
>sp|O94805|ACL6B_HUMAN Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1 Back     alignment and function description
>sp|P86173|ACL6B_RAT Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2 Back     alignment and function description
>sp|Q99MR0|ACL6B_MOUSE Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1 Back     alignment and function description
>sp|A4FUX8|ACL6B_BOVIN Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
356504541445 PREDICTED: actin-related protein 4-like 0.991 0.991 0.848 0.0
357490037444 Actin-related protein [Medicago truncatu 0.988 0.990 0.846 0.0
356520738446 PREDICTED: actin-related protein 4-like 0.991 0.988 0.837 0.0
217074906445 unknown [Medicago truncatula] gi|3885193 0.988 0.988 0.842 0.0
357490039445 Actin-related protein [Medicago truncatu 0.988 0.988 0.842 0.0
449440929445 PREDICTED: actin-related protein 4-like 0.991 0.991 0.828 0.0
359490940444 PREDICTED: actin-related protein 4-like 0.988 0.990 0.835 0.0
224118920441 actin related protein [Populus trichocar 0.986 0.995 0.827 0.0
255541792442 protein binding protein, putative [Ricin 0.991 0.997 0.825 0.0
356524067431 PREDICTED: actin-related protein 4-like 0.966 0.997 0.780 0.0
>gi|356504541|ref|XP_003521054.1| PREDICTED: actin-related protein 4-like [Glycine max] Back     alignment and taxonomy information
 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/449 (84%), Positives = 402/449 (89%), Gaps = 8/449 (1%)

Query: 1   MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAID 60
           MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMD+D++ N E NS SA +
Sbjct: 1   MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDEADNGENNSASAPE 60

Query: 61  SKNNV---DSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRE 117
           S NNV   DS+K KGKRKLYVG+QSLG+RRDHMEVLSP KDG+V DWDIVDSIWDHAFRE
Sbjct: 61  SNNNVRNADSDKTKGKRKLYVGSQSLGYRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRE 120

Query: 118 CLLIDPKEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRA 177
           CLLIDPKEHPMLLAEPSSN+QQQRE +A   +       +F         VLTSFA GRA
Sbjct: 121 CLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYKAPALFLA----KNAVLTSFASGRA 176

Query: 178 TSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKR 237
           TSLVVD GGGS TVAPVHDGYVLQK V TSPIGGEFLT+CLMKSLESKGITIKPRYSF+R
Sbjct: 177 TSLVVDGGGGSITVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGITIKPRYSFRR 236

Query: 238 KENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYE 297
           KE RPGEFQ VDL+FPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMT YE
Sbjct: 237 KEIRPGEFQTVDLEFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTSYE 296

Query: 298 LPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIP-FRGLPQMVIDSINKCDVDI 356
           LPDGQ IEIGADRFK PDVLFNPSLVQ+IPG E+FAE  P  RGLPQMVI+SINKCDVDI
Sbjct: 297 LPDGQTIEIGADRFKIPDVLFNPSLVQSIPGTESFAEIAPSVRGLPQMVIESINKCDVDI 356

Query: 357 RRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSIL 416
           RRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKV++SGNATERRFSVWIGGSIL
Sbjct: 357 RRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSIL 416

Query: 417 ASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
           ASLGSFQQMWFSKSEYEEHGASYIQRKCP
Sbjct: 417 ASLGSFQQMWFSKSEYEEHGASYIQRKCP 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357490037|ref|XP_003615306.1| Actin-related protein [Medicago truncatula] gi|355516641|gb|AES98264.1| Actin-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356520738|ref|XP_003529017.1| PREDICTED: actin-related protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|217074906|gb|ACJ85813.1| unknown [Medicago truncatula] gi|388519325|gb|AFK47724.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357490039|ref|XP_003615307.1| Actin-related protein [Medicago truncatula] gi|355516642|gb|AES98265.1| Actin-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449440929|ref|XP_004138236.1| PREDICTED: actin-related protein 4-like [Cucumis sativus] gi|449477069|ref|XP_004154920.1| PREDICTED: actin-related protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359490940|ref|XP_002275561.2| PREDICTED: actin-related protein 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118920|ref|XP_002317939.1| actin related protein [Populus trichocarpa] gi|222858612|gb|EEE96159.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541792|ref|XP_002511960.1| protein binding protein, putative [Ricinus communis] gi|223549140|gb|EEF50629.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356524067|ref|XP_003530654.1| PREDICTED: actin-related protein 4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
TAIR|locus:2014104441 ARP4 "AT1G18450" [Arabidopsis 0.973 0.981 0.695 1.5e-163
DICTYBASE|DDB_G0280887440 arpD "actin related protein 4" 0.952 0.963 0.409 3.7e-80
UNIPROTKB|E1BR36379 ACTL6A "Uncharacterized protei 0.608 0.715 0.392 4.2e-71
UNIPROTKB|E1BS78422 ACTL6A "Uncharacterized protei 0.826 0.872 0.354 5.3e-71
UNIPROTKB|Q4R333429 ACTL6A "Actin-like protein 6A" 0.849 0.881 0.352 5.5e-61
UNIPROTKB|O96019429 ACTL6A "Actin-like protein 6A" 0.849 0.881 0.352 7.1e-61
MGI|MGI:1861453429 Actl6a "actin-like 6A" [Mus mu 0.849 0.881 0.352 9e-61
UNIPROTKB|J9NXE2373 ACTB "Actin, cytoplasmic 1" [C 0.388 0.463 0.420 1.1e-60
RGD|1307747429 Actl6a "actin-like 6A" [Rattus 0.849 0.881 0.352 1.5e-60
SGD|S000001855375 ACT1 "Actin" [Saccharomyces ce 0.388 0.461 0.405 1.8e-60
TAIR|locus:2014104 ARP4 "AT1G18450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
 Identities = 315/453 (69%), Positives = 357/453 (78%)

Query:     1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID---QMDID-DSANAERNSG 56
             MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSV+GA+D    MD+D DS     NS 
Sbjct:     1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSE 60

Query:    57 SAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFR 116
                DSK   +S K K KRKLYVG+Q++ +RRDHMEVLSP+KDG             HAF+
Sbjct:    61 ---DSKT--ESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFK 115

Query:   117 ECLLIDPKEHPMLLAEPSSNTQQQRESSA---FSFWVCVCGILVFCPVIEFDALVLTSFA 173
              CL+IDP EHPMLLAEP  NTQQQRE +A   F  +      +   PV       LTSFA
Sbjct:   116 SCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPV-------LTSFA 168

Query:   174 LGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRY 233
              GRATSLVVDCGGGSTT++PVHDGYVLQK V +SP+GGEFLT+CL+KSLESKGI I+PRY
Sbjct:   169 TGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRY 228

Query:   234 SFKRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPM 293
             SFKRKE R GEFQ+ D+D P+TTESYKL+CQR+I  DIK+ +CR PDTPYD+ +YSNIP 
Sbjct:   229 SFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPT 288

Query:   294 TPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIP-FRGLPQMVIDSINKC 352
             T YELPDGQ +EIGADRFK PDV+FNPS+VQTIPGME +AE IP  RGLP MV++SINKC
Sbjct:   289 TSYELPDGQTLEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKC 348

Query:   353 DVDIRRELFSSILLAGGTASMQQXXXXXXXXXXXXSPQAARVKVVSSGNATERRFSVWIG 412
             DVDIRREL+SSILLAGGT+SMQQ            SP +ARVKV++SGN TERRFSVWIG
Sbjct:   349 DVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIG 408

Query:   413 GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
             GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP
Sbjct:   409 GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005634 "nucleus" evidence=IDA
GO:0006325 "chromatin organization" evidence=RCA;TAS
GO:0005730 "nucleolus" evidence=IDA
GO:0048235 "pollen sperm cell differentiation" evidence=IMP
GO:0048574 "long-day photoperiodism, flowering" evidence=IMP
GO:0000003 "reproduction" evidence=RCA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0010638 "positive regulation of organelle organization" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
DICTYBASE|DDB_G0280887 arpD "actin related protein 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR36 ACTL6A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BS78 ACTL6A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R333 ACTL6A "Actin-like protein 6A" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|O96019 ACTL6A "Actin-like protein 6A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1861453 Actl6a "actin-like 6A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXE2 ACTB "Actin, cytoplasmic 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307747 Actl6a "actin-like 6A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
SGD|S000001855 ACT1 "Actin" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75D00ACT_ASHGONo assigned EC number0.35970.82690.9787yesno
A2YR10ARP4_ORYSINo assigned EC number0.70530.98870.9932N/Ano
Q9Z2N8ACL6A_MOUSENo assigned EC number0.38350.94150.9766yesno
Q6ZJW9ARP4_ORYSJNo assigned EC number0.70530.98870.9932yesno
P20359ACTG_EMENINo assigned EC number0.35390.80890.96yesno
P60010ACT_YEASTNo assigned EC number0.36190.82690.9813yesno
Q84M92ARP4_ARATHNo assigned EC number0.73730.97300.9818yesno
P60009ACT_CANGANo assigned EC number0.36190.82690.9813yesno
O96019ACL6A_HUMANNo assigned EC number0.38350.94150.9766yesno
Q9UVF3ACT_YARLINo assigned EC number0.34980.82920.984yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
pfam00022367 pfam00022, Actin, Actin 1e-162
smart00268373 smart00268, ACTIN, Actin 1e-106
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 3e-87
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 8e-84
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 1e-83
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-69
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-61
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 3e-44
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 4e-08
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  461 bits (1188), Expect = e-162
 Identities = 182/445 (40%), Positives = 249/445 (55%), Gaps = 82/445 (18%)

Query: 5   DEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNN 64
           DEVSA+VID GS T KAG+AGEDAP+AV PSVVG              R  G  +     
Sbjct: 1   DEVSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRP------------RGRGVMV----- 43

Query: 65  VDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPK 124
                     K YVG ++L  +R  +EV  P++DG+V +WD ++ IW+H F E L +DP+
Sbjct: 44  ----------KYYVGDEALS-KRPGLEVRYPIEDGIVENWDAMEKIWEHTFFEELRVDPE 92

Query: 125 EHPMLLAEPSSNTQQQRESSA---FSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLV 181
           EHP+LL EP  N    RE +    F  +      L           VL+++A GR T LV
Sbjct: 93  EHPLLLTEPPLNPPANREKATEIMFETFGVPA--LYLAK-----QAVLSAYASGRTTGLV 145

Query: 182 VDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENR 241
           VD G G T+V PV++GYVLQK +  S + G+ LT+ L K L S+                
Sbjct: 146 VDSGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYLRKLLSSR---------------- 189

Query: 242 PGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPY-DESAYSNIPMTPYELPD 300
                         T S+  Y +  +  DIKE +C   D P+ D +A S+ P   YELPD
Sbjct: 190 --------------TYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPD 235

Query: 301 GQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRREL 360
           G VI +G +RF+ P++LFNPSL+ +              G+P+++ DSIN CDVD+R  L
Sbjct: 236 GYVIILGNERFRVPEILFNPSLIGSESA-----------GIPELIYDSINACDVDLRPSL 284

Query: 361 FSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIGGSILASLG 420
            ++I++ GGT       ERLEK+L + +P   +VK+++  N  ER++S WIGGSILASLG
Sbjct: 285 LANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPN--ERKYSAWIGGSILASLG 342

Query: 421 SFQQMWFSKSEYEEHGASYIQRKCP 445
           +FQQMW SK EYEEHG+S ++RKC 
Sbjct: 343 TFQQMWVSKQEYEEHGSSVVERKCF 367

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00452375 actin; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PRK13928336 rod shape-determining protein Mbl; Provisional 99.97
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.97
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.92
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.76
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.68
CHL00094 621 dnaK heat shock protein 70 99.57
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.52
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.5
PLN03184 673 chloroplast Hsp70; Provisional 99.5
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.48
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.48
PRK13411 653 molecular chaperone DnaK; Provisional 99.47
PRK01433 595 hscA chaperone protein HscA; Provisional 99.46
PRK13410 668 molecular chaperone DnaK; Provisional 99.45
PRK05183 616 hscA chaperone protein HscA; Provisional 99.44
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.44
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.42
PRK11678450 putative chaperone; Provisional 99.22
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.17
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.14
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.98
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.88
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.87
PRK13917344 plasmid segregation protein ParM; Provisional 98.77
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.74
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.64
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.48
COG4820277 EutJ Ethanolamine utilization protein, possible ch 98.43
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.36
PRK10719475 eutA reactivating factor for ethanolamine ammonia 97.94
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 97.79
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 97.71
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 97.69
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 97.65
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 97.62
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 97.01
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 96.46
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 96.06
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 95.87
COG4819473 EutA Ethanolamine utilization protein, possible ch 94.71
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 94.27
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 93.89
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 93.15
COG0248492 GppA Exopolyphosphatase [Nucleotide transport and 92.58
PRK10854 513 exopolyphosphatase; Provisional 91.21
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 88.81
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 88.19
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 88.05
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 83.35
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 82.34
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-93  Score=660.83  Aligned_cols=413  Identities=46%  Similarity=0.823  Sum_probs=377.3

Q ss_pred             CCCCCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecc
Q 037470            1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGT   80 (445)
Q Consensus         1 ~y~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (445)
                      |||+|+.++||||+||+++||||||+|.|++++||++|...+..     +.                  ....+.++++.
T Consensus         5 ~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~-----~d------------------~~~~~~~y~~~   61 (426)
T KOG0679|consen    5 VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTD-----GD------------------AEDKKGYYVDE   61 (426)
T ss_pred             cccccccceEEEeCCCceEeccccCCCCccccccceeeeeeccc-----Cc------------------cccccceEeec
Confidence            79999999999999999999999999999999999999753221     00                  01234589999


Q ss_pred             ccccCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCCcEEEecCCCCCHHHHHHHhc---cccCccCCeee
Q 037470           81 QSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRESSAF---SFWVCVCGILV  157 (445)
Q Consensus        81 ~~~~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~~  157 (445)
                      +++..++.++++..|+++|.|.|||.++.+|+|+|.++|.++|.+||+||+||+++++..|++++|   |.++       
T Consensus        62 ~ai~~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~n-------  134 (426)
T KOG0679|consen   62 NAIHVPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLN-------  134 (426)
T ss_pred             hhccCCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcC-------
Confidence            999999999999999999999999999999999999999999999999999999999999999999   9999       


Q ss_pred             ccceE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccc
Q 037470          158 FCPVI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFK  236 (445)
Q Consensus       158 ~~p~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~  236 (445)
                       +|++ ++++++|++||.|+.||||||||++.|+|+||+||+++.+++.+.++||++|+..++++|+.+++.+.|.|.++
T Consensus       135 -vPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia  213 (426)
T KOG0679|consen  135 -VPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIA  213 (426)
T ss_pred             -CceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhh
Confidence             9999 99999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccC-CCCCcc--eeccCCCCCchhHHhHhHHHHHHHHhhcceecCCCcCCccccCCCCCceeECCCCceEeeCcccccc
Q 037470          237 RKEN-RPGEFQ--IVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQVIEIGADRFKT  313 (445)
Q Consensus       237 ~~~~-~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~lpdg~~i~l~~er~~~  313 (445)
                      .++. +.+...  ......+++++||+.+....+++++|+.++.+++.++++....+.+++.|++|||.+..++.|||++
T Consensus       214 ~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ri  293 (426)
T KOG0679|consen  214 SKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRI  293 (426)
T ss_pred             hcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeec
Confidence            8863 333322  2445567889999999999999999999999999999998888899999999999999999999999


Q ss_pred             cccccCCCCCCCCCCCCCccCC-CCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCc
Q 037470          314 PDVLFNPSLVQTIPGMENFAEN-IPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAA  392 (445)
Q Consensus       314 ~E~lF~p~~~~~~~~~~~~~~~-~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~  392 (445)
                      ||.||+|+......+...++.. ....|+++++..||..||+|+|..|++|||+|||+|+|+||.+||++||..++|+. 
T Consensus       294 pe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-  372 (426)
T KOG0679|consen  294 PEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-  372 (426)
T ss_pred             chhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-
Confidence            9999999998654322222222 23579999999999999999999999999999999999999999999999999987 


Q ss_pred             eEEEEecCCCCCccceeEeeeEEeecccccccccccHHHHHHcCc-hhhhhcCC
Q 037470          393 RVKVVSSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA-SYIQRKCP  445 (445)
Q Consensus       393 ~v~v~~~~~~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~-~~~~~k~~  445 (445)
                      +++++++.+..+|++++|+||||||||++|+++||||+||||+|. ..+.||||
T Consensus       373 rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc~  426 (426)
T KOG0679|consen  373 RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRCP  426 (426)
T ss_pred             eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence            999999988999999999999999999999999999999999999 88899998

>PTZ00452 actin; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-62
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 2e-60
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 2e-60
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 4e-60
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 4e-60
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 4e-60
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 4e-60
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 4e-60
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 5e-60
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 8e-60
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 8e-60
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 1e-59
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 2e-59
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 4e-59
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 6e-59
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 7e-59
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 8e-59
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 3e-58
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 9e-58
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-57
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 2e-57
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 3e-57
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 3e-57
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 3e-57
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 4e-57
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 5e-57
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 6e-57
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 1e-56
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 8e-56
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 9e-56
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 1e-55
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 1e-55
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 6e-55
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 3e-54
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 4e-54
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 2e-53
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 3e-52
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 3e-51
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 1e-50
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 4e-27
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 6e-27
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 1e-26
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 1e-23
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 2e-21
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 4e-15
4i6m_A477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 2e-07
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-06
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 220/444 (49%), Gaps = 74/444 (16%)
Query: 4   GDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKN 63
           GDEV A+VID GS  CKAG+AG+DAP+AVFPS+VG              R++G  +    
Sbjct: 2   GDEVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------RPRHTGVMV---- 45
Query: 64  NVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDP 123
                 G G++  YVG ++   +R  + +  P++ G             H F   L + P
Sbjct: 46  ------GMGQKDSYVGDEAQS-KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 98
Query: 124 KEHPMLLAEPSSNTQQQRESSAFSFWVCVCGILVFCPVIEFDALVLTSFALGRATSLVVD 183
           +EHP+LL E   N +  RE      +       ++  +      VL+ +A GR T +V+D
Sbjct: 99  EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI----QAVLSLYASGRTTGIVLD 154
Query: 184 CGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPG 243
            G G T   P+++GY L   +    + G  LT+ LMK L  +G      YSF        
Sbjct: 155 SGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG------YSF-------- 200
Query: 244 EFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAP---DTPYDESAYSNIPMTPYELPD 300
                      TT       +R I  DIKE +C      +     +A S+     YELPD
Sbjct: 201 ----------TTT------AEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYELPD 244
Query: 301 GQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKCDVDIRREL 360
           GQVI IG +RF+ P+ LF PS +    GME+        G+ +   +SI KCDVDIR++L
Sbjct: 245 GQVITIGNERFRAPEALFQPSFL----GMES-------AGIHETTYNSIMKCDVDIRKDL 293
Query: 361 FSSILLAGGTASMQQXXXXXXXXXXXXSPQAARVKVVSSGNATERRFSVWIGGSILASLG 420
           + +++L+GGT                 +P   ++K+++     ER++SVWIGGSILASL 
Sbjct: 294 YGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLS 350
Query: 421 SFQQMWFSKSEYEEHGASYIQRKC 444
           +FQQMW SK EY+E G S + RKC
Sbjct: 351 TFQQMWISKEEYDESGPSIVHRKC 374
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-129
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-128
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 1e-125
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 1e-122
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 5e-87
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-60
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 5e-05
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 8e-04
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  377 bits (969), Expect = e-129
 Identities = 150/452 (33%), Positives = 228/452 (50%), Gaps = 92/452 (20%)

Query: 5   DEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNN 64
           DE +A+V D GS   KAG+AG+DAP+AVFPS+VG                       ++ 
Sbjct: 3   DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVG---------------------RPRHQ 41

Query: 65  VDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPK 124
                G G++  YVG ++   +R  + +  P++ G++ +WD ++ IW H F   L + P+
Sbjct: 42  -GVMVGMGQKDSYVGDEAQS-KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE 99

Query: 125 EHPMLLAEPSSNTQQQRESSA---F------SFWVCVCGILVFCPVIEFDALVLTSFALG 175
           EHP LL E   N +  RE      F      + +V +               VL+ +A G
Sbjct: 100 EHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQA-------------VLSLYASG 146

Query: 176 RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSF 235
           R T +V+D G G T   P+++GY L   +    + G  LT+ LMK L  +G +       
Sbjct: 147 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYS------- 199

Query: 236 KRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRA---PDTPYDESAYSNIP 292
                           F  T E       R I  DIKE +C      +     +A S+  
Sbjct: 200 ----------------FVTTAE-------REIVRDIKEKLCYVALDFENEMATAASSSSL 236

Query: 293 MTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKC 352
              YELPDGQVI IG +RF+ P+ LF PS +    GME         G+ +   +SI KC
Sbjct: 237 EKSYELPDGQVITIGNERFRCPETLFQPSFI----GME-------SAGIHETTYNSIMKC 285

Query: 353 DVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIG 412
           D+DIR++L+++ +++GGT     + +R++K++   +P   ++K+++     ER++SVWIG
Sbjct: 286 DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIG 342

Query: 413 GSILASLGSFQQMWFSKSEYEEHGASYIQRKC 444
           GSILASL +FQQMW +K EY+E G S + RKC
Sbjct: 343 GSILASLSTFQQMWITKQEYDEAGPSIVHRKC 374
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.87
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.87
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.85
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.82
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.77
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.67
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.64
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.57
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.56
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.52
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.49
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.4
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.38
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.03
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 98.94
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 98.91
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.23
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.2
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 90.38
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 90.27
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 88.97
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 86.15
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 84.85
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 84.62
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.8e-88  Score=681.36  Aligned_cols=402  Identities=33%  Similarity=0.579  Sum_probs=345.5

Q ss_pred             CCCCCCCCcEEEeCCCceeEeeecCCCCCCcccCcceeeecCCCcccccccccCCCccccCCCccCCcCCCCCcceEecc
Q 037470            1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGT   80 (445)
Q Consensus         1 ~y~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (445)
                      |||+|+..+||||+||++|||||+|++.|++++||+||+++..                            ..++.++|+
T Consensus        17 ~yggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~----------------------------~~~~~~vG~   68 (498)
T 3qb0_A           17 VYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTAD----------------------------EGNKKIFSE   68 (498)
T ss_dssp             --CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSC----------------------------SSCCEECCT
T ss_pred             ccCCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccC----------------------------CCccEEEec
Confidence            6999999999999999999999999999999999999998642                            125789999


Q ss_pred             ccccCcCCCeEEeccCCCCeecCHHHHHHHHHHHhccccCCCCCCC-cEEEecCCCCCHHHHHHHhc---cccCccCCee
Q 037470           81 QSLGFRRDHMEVLSPLKDGVVVDWDIVDSIWDHAFRECLLIDPKEH-PMLLAEPSSNTQQQRESSAF---SFWVCVCGIL  156 (445)
Q Consensus        81 ~~~~~~~~~~~~~~P~~~g~i~d~d~~e~i~~~~~~~~L~~~~~~~-~vll~ep~~~~~~~r~~~~e---E~~~~~~~~~  156 (445)
                      ++....++.+.+++|+++|+|.|||++|.+|+|+|++.|++++.++ ||||+||++++...|++++|   |.|+      
T Consensus        69 e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~------  142 (498)
T 3qb0_A           69 QSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQ------  142 (498)
T ss_dssp             TGGGSCCTTEEEEESEETTEESCHHHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSC------
T ss_pred             HHHhcCcCceEEeccCcCCEEccHHHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcC------
Confidence            8655567889999999999999999999999999988999999999 99999999999999999999   9999      


Q ss_pred             eccceE-EechhhhhhhccCCceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCcccc
Q 037470          157 VFCPVI-EFDALVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSF  235 (445)
Q Consensus       157 ~~~p~v-~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~  235 (445)
                        +|++ ++.+++|++|++|+++|||||+|++.|+|+||++|+++.++++++++||++||++|.++|++++  +.|.|.+
T Consensus       143 --vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~--i~P~~~i  218 (498)
T 3qb0_A          143 --FEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKE--IIPLFAI  218 (498)
T ss_dssp             --CSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSC--CCCSTTE
T ss_pred             --CCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhcc--ccchhhh
Confidence              9999 9999999999999999999999999999999999999999999999999999999999998765  3466666


Q ss_pred             ccccCCCCCcceeccCCCCCchhHHhHh-HHHHHHHHhhcceecCCC-cCCcc--ccCCCCCceeECCCCceEeeCcc-c
Q 037470          236 KRKENRPGEFQIVDLDFPNTTESYKLYC-QRVIASDIKECVCRAPDT-PYDES--AYSNIPMTPYELPDGQVIEIGAD-R  310 (445)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~iKe~~~~v~~~-~~~~~--~~~~~~~~~~~lpdg~~i~l~~e-r  310 (445)
                      +++.-   .+.....++ +.+.||..+. .++++++|||++|+|+.+ .++..  ...+...+.|+||||+.|.++.| |
T Consensus       219 ~~k~~---~~~~~~~~~-~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~R  294 (498)
T 3qb0_A          219 KQRKP---EFIKKTFDY-EVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETR  294 (498)
T ss_dssp             EECSS---SCEECCCSS-CCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHH
T ss_pred             ccccc---ccccccCCC-ccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHh
Confidence            55421   011111111 2456777776 566999999999999975 23322  12345678999999999999999 9


Q ss_pred             ccccccccCCCCCCCCC-------CC-----CCc-----------------------------c----------------
Q 037470          311 FKTPDVLFNPSLVQTIP-------GM-----ENF-----------------------------A----------------  333 (445)
Q Consensus       311 ~~~~E~lF~p~~~~~~~-------~~-----~~~-----------------------------~----------------  333 (445)
                      |++||+||+|++++...       |.     +.|                             +                
T Consensus       295 f~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (498)
T 3qb0_A          295 YGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNET  374 (498)
T ss_dssp             HHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC---------------------------------------
T ss_pred             hhCchhhCCHhHcCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999874300       00     000                             0                


Q ss_pred             ------------CCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCC
Q 037470          334 ------------ENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGN  401 (445)
Q Consensus       334 ------------~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~  401 (445)
                                  ...+..||+++|.++|++||+|+|+.|++||||+||+|++|||.+||++||+.++| .++++|+++.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~  453 (498)
T 3qb0_A          375 GKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGH  453 (498)
T ss_dssp             --------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSC
T ss_pred             ccccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCC
Confidence                        00156899999999999999999999999999999999999999999999999999 88999998655


Q ss_pred             CCCccceeEeeeEEeecccccccccccHHHHHHcCc-hhhhhcCC
Q 037470          402 ATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA-SYIQRKCP  445 (445)
Q Consensus       402 ~~~~~~~~W~Gasilasl~~f~~~~itr~eY~E~G~-~~~~~k~~  445 (445)
                      +.+|.+++|+||||||+|++|+++||||+||+|+|+ .+|+|||+
T Consensus       454 ~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc~  498 (498)
T 3qb0_A          454 TIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRFR  498 (498)
T ss_dssp             TGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTTC
T ss_pred             CCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccCc
Confidence            579999999999999999999999999999999999 89999996
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 445
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-65
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 3e-63
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 2e-35
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 8e-29
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 4e-26
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  207 bits (527), Expect = 3e-65
 Identities = 91/268 (33%), Positives = 140/268 (52%), Gaps = 47/268 (17%)

Query: 176 RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSF 235
           R T +V+D G G T   P+++GY L   +    + G  LT+ LMK L  +G +       
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 236 KRKENRPGEFQIVDLDFPNTTESYKLYCQRVIASDIKECVCRAPDTPYDE---SAYSNIP 292
           +                              I  DIKE +C       +E   +A S+  
Sbjct: 61  E------------------------------IVRDIKEKLCYVALDFENEMATAASSSSL 90

Query: 293 MTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENFAENIPFRGLPQMVIDSINKC 352
              YELPDGQVI IG +RF+ P+ LF PS +    GME         G+ +   +SI KC
Sbjct: 91  EKSYELPDGQVITIGNERFRCPETLFQPSFI----GME-------SAGIHETTYNSIMKC 139

Query: 353 DVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIG 412
           D+DIR++L+++ +++GGT     + +R++K++   +P   ++K+++     ER++SVWIG
Sbjct: 140 DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIG 196

Query: 413 GSILASLGSFQQMWFSKSEYEEHGASYI 440
           GSILASL +FQQMW +K EY+E G S +
Sbjct: 197 GSILASLSTFQQMWITKQEYDEAGPSIV 224
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.97
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.96
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.28
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.95
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.48
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.4
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.23
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 98.01
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 97.59
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.57
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 97.39
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 89.05
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 88.52
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 88.47
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 83.03
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-53  Score=392.41  Aligned_cols=222  Identities=41%  Similarity=0.750  Sum_probs=201.2

Q ss_pred             CceEEEEEcCCCceEEEEeecceecCccceEecccHHHHHHHHHHHHHhcCCcccCccccccccCCCCCcceeccCCCCC
Q 037470          176 RATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKSLESKGITIKPRYSFKRKENRPGEFQIVDLDFPNT  255 (445)
Q Consensus       176 ~~tglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  255 (445)
                      ++||||||+|++.|+|+||+||++++++++++++||++||++|.++|.+++.....                        
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~------------------------   56 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT------------------------   56 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCS------------------------
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCC------------------------
Confidence            58999999999999999999999999999999999999999999999988754321                        


Q ss_pred             chhHHhHhHHHHHHHHhhcceecCCCcCCccc---cCCCCCceeECCCCceEeeCcccccccccccCCCCCCCCCCCCCc
Q 037470          256 TESYKLYCQRVIASDIKECVCRAPDTPYDESA---YSNIPMTPYELPDGQVIEIGADRFKTPDVLFNPSLVQTIPGMENF  332 (445)
Q Consensus       256 ~~s~~~~~~~~~~~~iKe~~~~v~~~~~~~~~---~~~~~~~~~~lpdg~~i~l~~er~~~~E~lF~p~~~~~~~~~~~~  332 (445)
                            ....+.++++|+.+|+++.+...+..   ..+.....|.||||+.+.++.||+.+||+||+|...+.    +  
T Consensus        57 ------~~~~~~~~~~ke~~~~~~~d~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~----~--  124 (225)
T d2fxua2          57 ------TAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGM----E--  124 (225)
T ss_dssp             ------HHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTC----C--
T ss_pred             ------HHHHHHHHHHHHHHhhcccchhHHHhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCC----c--
Confidence                  24567899999999999886554322   23455678999999999999999999999999998753    2  


Q ss_pred             cCCCCCCCHHHHHHHHHHhCCHHhHHHHhcCccccCCCCchhhHHHHHHHHHhhhCCCCceEEEEecCCCCCccceeEee
Q 037470          333 AENIPFRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVVSSGNATERRFSVWIG  412 (445)
Q Consensus       333 ~~~~~~~~L~~~I~~~i~~~~~d~r~~L~~nIvLtGG~s~i~Gl~~RL~~eL~~~~p~~~~v~v~~~~~~~~~~~~~W~G  412 (445)
                           ..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||..+.|...+++++.   +.+|++++|+|
T Consensus       125 -----~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~---~~~~~~~aW~G  196 (225)
T d2fxua2         125 -----SAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIG  196 (225)
T ss_dssp             -----SCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEEC---CTTTTSHHHHH
T ss_pred             -----cCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEec---CCCCCeeEEeC
Confidence                 7799999999999999999999999999999999999999999999999999988999998   57899999999


Q ss_pred             eEEeecccccccccccHHHHHHcCchhhh
Q 037470          413 GSILASLGSFQQMWFSKSEYEEHGASYIQ  441 (445)
Q Consensus       413 asilasl~~f~~~~itr~eY~E~G~~~~~  441 (445)
                      |||+|++++|+++||||+||+|+|+++||
T Consensus       197 gsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         197 GSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             HHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             HhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure