Citrus Sinensis ID: 037475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
EEIPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFASF
Secondary Structure (PSIPRED)
ccccccccccccHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccccccHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
eeipeesttgdkkkKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNTSrlarykkkptitsrEIQTIVRLVLLGELAKHVASEGTKAVTKFASF
Flexible Loop (DISEMBL)
eeipeesttgdkkkkrakksiktykIYIFKVLNQIYLDIGISSKAMGIMNTSRlarykkkptitsreiqTIVRLVLLGELAkhvasegtkavtkfasf
Low Complexity Region (SEG)
EEIPEESTTGDkkkkrakksiktykIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFASF
Disordered region (IsUnstruct)
********************IKTYKIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVA*************
Disordered Region (DISOPRED)
***************************IFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFA**
Disordered Region (DISEMBL)
******************KSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFASF
Disordered Region (DISPRO)
*********************KTYKIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFASF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
EEIPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFASF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
P93354	146	Histone H2B OS=Nicotiana	N/A	no	0.948	0.636	0.650	4e-31
O65819	137	Histone H2B.3 (Fragment)	N/A	no	0.969	0.693	0.685	7e-31
O22582	147	Histone H2B OS=Gossypium	N/A	no	0.969	0.646	0.690	9e-30
P05621	150	Histone H2B.2 OS=Triticum	N/A	no	0.948	0.62	0.650	1e-29
O23629	150	Histone H2B.6 OS=Arabidop	yes	no	0.969	0.633	0.678	1e-29
O49118	145	Histone H2B OS=Capsicum a	N/A	no	0.969	0.655	0.694	1e-29
P40283	150	Histone H2B.11 OS=Arabido	yes	no	0.969	0.633	0.678	2e-29
Q9LZT0	145	Histone H2B.7 OS=Arabidop	yes	no	0.969	0.655	0.678	3e-29
Q1S9I9	148	Probable histone H2B.1 OS	N/A	no	0.969	0.641	0.690	3e-29
Q9SI96	151	Histone H2B.3 OS=Arabidop	no	no	0.969	0.629	0.681	4e-29

>sp|P93354|H2B_TOBAC Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 78/106 (73%), Gaps = 13/106 (12%)

Query: 5   EESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------------- 51
           +    GDKKKKRA+ S++TYKIYIF+VL  ++ DIGISSKAMGIMN+             
Sbjct: 40  DAGAAGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARES 99

Query: 52  SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           SRLA Y KKPTI+SREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 100 SRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 145

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Nicotiana tabacum (taxid: 4097)

>sp|O65819|H2B3_SOLLC Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1

 Score =  132 bits (331), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 85/108 (78%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT----------- 51
           +P+++  GDKKKKR+KK+++TYKIYIFKVL Q++ DIGISSKAMGIMN+           
Sbjct: 29  LPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ 88

Query: 52  --SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
             SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 89  EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Solanum lycopersicum (taxid: 4081)

>sp|O22582|H2B_GOSHI Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 84/110 (76%), Gaps = 15/110 (13%)

Query: 3   IPEE--STTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT--------- 51
           +P+E  +  GDKKKKR KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+         
Sbjct: 37  LPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL 96

Query: 52  ----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
               SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 97  AQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 146

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Gossypium hirsutum (taxid: 3635)

>sp|P05621|H2B2_WHEAT Histone H2B.2 OS=Triticum aestivum PE=1 SV=2

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 77/106 (72%), Gaps = 13/106 (12%)

Query: 5   EESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------------- 51
           E  T G KK  +AKK ++TYKIYIFKVL Q++ DIGISSKAM IMN+             
Sbjct: 44  EGKTRGRKKGSKAKKGVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGES 103

Query: 52  SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           ++LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 104 AKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTS 149

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Triticum aestivum (taxid: 4565)

>sp|O23629|H2B6_ARATH Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 83/109 (76%), Gaps = 14/109 (12%)

Query: 3   IPEESTTG-DKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT---------- 51
           +P+E+  G DKKKK  KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+          
Sbjct: 41  LPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA 100

Query: 52  ---SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
              S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 101 SESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|O49118|H2B_CAPAN Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 84/108 (77%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT----------- 51
           +P+++   DKKKKRAKKSI+TYKIYIFKVL Q++ DIGISSK+MGIMN+           
Sbjct: 37  LPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQ 96

Query: 52  --SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
             SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 97  ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Capsicum annuum (taxid: 4072)

>sp|P40283|H2B11_ARATH Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 83/109 (76%), Gaps = 14/109 (12%)

Query: 3   IPEESTTG-DKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT---------- 51
           +P+E+  G DKKKK  KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+          
Sbjct: 41  LPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA 100

Query: 52  ---SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
              S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 101 QEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT0|H2B7_ARATH Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 83/109 (76%), Gaps = 14/109 (12%)

Query: 3   IPEESTTG-DKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT---------- 51
           +P+E+  G DKKKK  KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+          
Sbjct: 36  LPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA 95

Query: 52  ---SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
              S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 96  SESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 85/110 (77%), Gaps = 15/110 (13%)

Query: 3   IPEE--STTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT--------- 51
           +P+E  S  G+KKKKR+KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+         
Sbjct: 38  LPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL 97

Query: 52  ----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
               SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 98  AQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Medicago truncatula (taxid: 3880)

>sp|Q9SI96|H2B3_ARATH Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 84/110 (76%), Gaps = 15/110 (13%)

Query: 3   IPEESTTG--DKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT--------- 51
           +P+E+ TG  +KKKKR KKS +TYKIYIFKVL Q++ DIGISSKAMGIMN+         
Sbjct: 41  LPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL 100

Query: 52  ----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
               S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 101 AQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 150

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
357472693	147	Histone H2B [Medicago truncatula] gi|355	0.959	0.639	0.681	5e-31
388519847	139	unknown [Lotus japonicus]	0.908	0.640	0.696	6e-30
146336941	137	putative histone [Medicago truncatula]	0.969	0.693	0.703	7e-30
388514615	109	unknown [Lotus japonicus]	0.897	0.807	0.701	1e-29
388495940	137	unknown [Medicago truncatula]	0.969	0.693	0.703	2e-29
7387729	146	RecName: Full=Histone H2B gi|1848210|emb	0.948	0.636	0.650	2e-29
351721179	137	uncharacterized protein LOC100305731 [Gl	0.969	0.693	0.694	2e-29
168020466	135	histone H2B [Physcomitrella patens subsp	0.897	0.651	0.673	3e-29
75278464	137	RecName: Full=Histone H2B.3; AltName: Fu	0.969	0.693	0.685	3e-29
82400146	146	histone H2B-like protein [Solanum tubero	0.969	0.650	0.685	7e-29

>gi|357472693|ref|XP_003606631.1| Histone H2B [Medicago truncatula] gi|355507686|gb|AES88828.1| Histone H2B [Medicago truncatula]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 84/110 (76%), Gaps = 16/110 (14%)

Query: 3   IPEE--STTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT--------- 51
           +P+E  S  GDKKK R+KK+++TYKIYIFKVL Q++ DIGISSKAMGIMN+         
Sbjct: 38  LPKEGGSAAGDKKK-RSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL 96

Query: 52  ----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
               SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 97  AQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519847|gb|AFK47985.1| unknown [Lotus japonicus]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 77/102 (75%), Gaps = 13/102 (12%)

Query: 9   TGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLA 55
           TG +KKKR KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+             SRLA
Sbjct: 37  TGSEKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLA 96

Query: 56  RYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           RY KKPTIT REIQT VRLV  GELAKH  SEGTKAVTKF S
Sbjct: 97  RYNKKPTITPREIQTAVRLVFPGELAKHAVSEGTKAVTKFTS 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146336941|gb|ABQ23584.1| putative histone [Medicago truncatula]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 85/108 (78%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMN------------ 50
           IP+E+++ DKKKKR KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN            
Sbjct: 29  IPKEASSADKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ 88

Query: 51  -TSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
            +SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 89  ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514615|gb|AFK45369.1| unknown [Lotus japonicus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 79/104 (75%), Gaps = 16/104 (15%)

Query: 10  GDKK---KKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SR 53
            DKK   KKR+KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+             SR
Sbjct: 5   ADKKPAEKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSR 64

Query: 54  LARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 65  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 108

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495940|gb|AFK36036.1| unknown [Medicago truncatula]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 85/108 (78%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT----------- 51
           IP+E+++ DKKKKR KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+           
Sbjct: 29  IPKEASSTDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ 88

Query: 52  --SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
             SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 89  ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7387729|sp|P93354.3|H2B_TOBAC RecName: Full=Histone H2B gi|1848210|emb|CAA72091.1| histone H2B1 [Nicotiana tabacum]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 78/106 (73%), Gaps = 13/106 (12%)

Query: 5   EESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------------- 51
           +    GDKKKKRA+ S++TYKIYIF+VL  ++ DIGISSKAMGIMN+             
Sbjct: 40  DAGAAGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARES 99

Query: 52  SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           SRLA Y KKPTI+SREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 100 SRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 145

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721179|ref|NP_001235921.1| uncharacterized protein LOC100305731 [Glycine max] gi|255626455|gb|ACU13572.1| unknown [Glycine max]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 85/108 (78%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMN------------ 50
           IP+++ +G+KKKKR KKS++TYKIYIFKVL Q++ DIGISSKAMGIMN            
Sbjct: 29  IPKDAASGEKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ 88

Query: 51  -TSRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
            +SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 89  ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168020466|ref|XP_001762764.1| histone H2B [Physcomitrella patens subsp. patens] gi|162686172|gb|EDQ72563.1| histone H2B [Physcomitrella patens subsp. patens]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 78/101 (77%), Gaps = 13/101 (12%)

Query: 10  GDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLAR 56
           GD K+K++KKSI+TYKIYI+KVL Q++ D GISSKAMGIMN+             +RLAR
Sbjct: 34  GDAKRKKSKKSIETYKIYIYKVLKQVHPDTGISSKAMGIMNSFINDIFEKLAQEAARLAR 93

Query: 57  YKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           Y KKPTITSREIQT VRL+L GELAKH  SEGTKAVTKF S
Sbjct: 94  YNKKPTITSREIQTAVRLILPGELAKHAVSEGTKAVTKFTS 134

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75278464|sp|O65819.1|H2B3_SOLLC RecName: Full=Histone H2B.3; AltName: Full=LeH2B-3 gi|3021485|emb|CAA12231.1| histone H2B-3 [Solanum lycopersicum]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 85/108 (78%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT----------- 51
           +P+++  GDKKKKR+KK+++TYKIYIFKVL Q++ DIGISSKAMGIMN+           
Sbjct: 29  LPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ 88

Query: 52  --SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
             SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 89  EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 136

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82400146|gb|ABB72812.1| histone H2B-like protein [Solanum tuberosum]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 86/108 (79%), Gaps = 13/108 (12%)

Query: 3   IPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT----------- 51
           +P+++ +G+KKKK+AKKS++TYKIYIFKVL Q++ DIGISSKAMGIMN+           
Sbjct: 38  LPKDAASGEKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ 97

Query: 52  --SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
             SRLARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct: 98  ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 145

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2054553	151	AT2G28720 [Arabidopsis thalian	0.989	0.642	0.571	2.9e-23
TAIR|locus:2077182	150	HTB9 [Arabidopsis thaliana (ta	0.989	0.646	0.576	4.8e-23
TAIR|locus:2077152	145	HTB11 [Arabidopsis thaliana (t	0.989	0.668	0.576	4.8e-23
TAIR|locus:2172691	145	HTB2 "histone B2" [Arabidopsis	0.989	0.668	0.576	4.8e-23
TAIR|locus:2168093	150	HTB4 [Arabidopsis thaliana (ta	0.989	0.646	0.576	4.8e-23
TAIR|locus:2026494	148	HTB1 [Arabidopsis thaliana (ta	0.938	0.621	0.598	1.3e-22
TAIR|locus:2181823	132	AT5G02570 [Arabidopsis thalian	0.734	0.545	0.705	3.4e-22
TAIR|locus:2074959	126	AT3G09480 [Arabidopsis thalian	0.734	0.571	0.694	5.5e-22
TAIR|locus:2084096	138	AT3G53650 [Arabidopsis thalian	0.734	0.521	0.694	7e-22
TAIR|locus:2049857	138	AT2G37470 [Arabidopsis thalian	0.734	0.521	0.682	9e-22

TAIR|locus:2054553 AT2G28720 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 64/112 (57%), Positives = 74/112 (66%)

Query:     1 EEIPEESTTG--DXXXXXXXXXXXXXXIYIFKVLNQIYLDIGISSKAMGIMNT------- 51
             +++P+E+ TG  +              IYIFKVL Q++ DIGISSKAMGIMN+       
Sbjct:    39 KKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE 98

Query:    52 ------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
                   S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct:    99 KLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 150

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

TAIR|locus:2077182 HTB9 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 64/111 (57%), Positives = 73/111 (65%)

Query:     1 EEIPEESTTG-DXXXXXXXXXXXXXXIYIFKVLNQIYLDIGISSKAMGIMNT-------- 51
             +++P+E+  G D              IYIFKVL Q++ DIGISSKAMGIMN+        
Sbjct:    39 KKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK 98

Query:    52 -----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
                  S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct:    99 LASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2077152 HTB11 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 64/111 (57%), Positives = 73/111 (65%)

Query:     1 EEIPEESTTG-DXXXXXXXXXXXXXXIYIFKVLNQIYLDIGISSKAMGIMNT-------- 51
             +++P+E+  G D              IYIFKVL Q++ DIGISSKAMGIMN+        
Sbjct:    34 KKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK 93

Query:    52 -----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
                  S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct:    94 LASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2172691 HTB2 "histone B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 64/111 (57%), Positives = 72/111 (64%)

Query:     1 EEIPEEST-TGDXXXXXXXXXXXXXXIYIFKVLNQIYLDIGISSKAMGIMNT-------- 51
             +++P+E    GD              IYIFKVL Q++ DIGISSKAMGIMN+        
Sbjct:    34 KKLPKEPAGAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK 93

Query:    52 -----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
                  S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct:    94 LAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2168093 HTB4 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 64/111 (57%), Positives = 73/111 (65%)

Query:     1 EEIPEESTTG-DXXXXXXXXXXXXXXIYIFKVLNQIYLDIGISSKAMGIMNT-------- 51
             +++P+E+  G D              IYIFKVL Q++ DIGISSKAMGIMN+        
Sbjct:    39 KKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK 98

Query:    52 -----SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
                  S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct:    99 LAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2026494 HTB1 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 64/107 (59%), Positives = 70/107 (65%)

Query:     4 PEESTTGDXXXXXXXXXXXXXXIYIFKVLNQIYLDIGISSKAMGIMNT------------ 51
             P+E+  GD              IYIFKVL Q++ DIGISSKAMGIMN+            
Sbjct:    43 PKEA--GDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE 100

Query:    52 -SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
              S+LARY KKPTITSREIQT VRLVL GELAKH  SEGTKAVTKF S
Sbjct:   101 SSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2181823 AT5G02570 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 60/85 (70%), Positives = 63/85 (74%)

Query:    26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
             IYIFKVL Q++ DIGIS KAMGIMN+             SRLARY KKPTITSREIQT V
Sbjct:    47 IYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 106

Query:    73 RLVLLGELAKHVASEGTKAVTKFAS 97
             RLVL GELAKH  SEGTKAVTKF S
Sbjct:   107 RLVLPGELAKHAVSEGTKAVTKFTS 131

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2074959 AT3G09480 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/85 (69%), Positives = 63/85 (74%)

Query:    26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
             IY+FKVL Q++ DIGIS KAMGIMN+             SRLARY KKPTITSREIQT V
Sbjct:    41 IYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAV 100

Query:    73 RLVLLGELAKHVASEGTKAVTKFAS 97
             RLVL GELAKH  SEGTKAVTKF S
Sbjct:   101 RLVLPGELAKHAVSEGTKAVTKFTS 125

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

TAIR|locus:2084096 AT3G53650 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 59/85 (69%), Positives = 63/85 (74%)

Query:    26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
             IYIFKVL Q++ DIGIS KAMGIMN+             SRLARY KKPTITSREIQT V
Sbjct:    53 IYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 112

Query:    73 RLVLLGELAKHVASEGTKAVTKFAS 97
             RLVL GEL+KH  SEGTKAVTKF S
Sbjct:   113 RLVLPGELSKHAVSEGTKAVTKFTS 137

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

TAIR|locus:2049857 AT2G37470 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 58/85 (68%), Positives = 63/85 (74%)

Query:    26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
             IYIFKVL Q++ D+GIS KAMGIMN+             S+LARY KKPTITSREIQT V
Sbjct:    54 IYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAV 113

Query:    73 RLVLLGELAKHVASEGTKAVTKFAS 97
             RLVL GELAKH  SEGTKAVTKF S
Sbjct:   114 RLVLPGELAKHAVSEGTKAVTKFTS 138

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006334 "nucleosome assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40283	H2B11_ARATH	No assigned EC number	0.6788	0.9693	0.6333	yes	no
O23629	H2B6_ARATH	No assigned EC number	0.6788	0.9693	0.6333	yes	no
Q9LZT0	H2B7_ARATH	No assigned EC number	0.6788	0.9693	0.6551	yes	no
P0C1H5	H2B7_CHICK	No assigned EC number	0.6039	0.8775	0.6825	yes	no
Q1SU99	H2B3_MEDTR	No assigned EC number	0.7058	0.9081	0.6449	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
smart00427	97	smart00427, H2B, Histone H2B	1e-30
PLN00158	116	PLN00158, PLN00158, histone H2B; Provisional	2e-27
PTZ00463	117	PTZ00463, PTZ00463, histone H2B; Provisional	2e-22
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	4e-08

>gnl|CDD|197718 smart00427, H2B, Histone H2B

 Score =  103 bits (259), Expect = 1e-30
 Identities = 58/97 (59%), Positives = 69/97 (71%), Gaps = 13/97 (13%)

Query: 14 KKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKK 60
          KKR KK  +TY IYI+KVL Q++ D GISS+AM IMN+             S+LARY KK
Sbjct: 1  KKRVKKRKETYAIYIYKVLKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASKLARYNKK 60

Query: 61 PTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           T++SREIQT VRL+L GELAKH  SEGTKAVTK +S
Sbjct: 61 STLSSREIQTAVRLILPGELAKHAVSEGTKAVTKASS 97

Length = 97

>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional

 Score = 96.3 bits (239), Expect = 2e-27
 Identities = 62/107 (57%), Positives = 72/107 (67%), Gaps = 13/107 (12%)

Query: 4   PEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------------ 51
           P +      KKK +K   +TYKIYI+KVL Q++ D GISSKAM IMN+            
Sbjct: 9   PAKKAAKGAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATE 68

Query: 52  -SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
             +LARY KKPT+TSREIQT VRL+L GELAKH  SEGTKAVTKF S
Sbjct: 69  AGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTS 115

Length = 116

>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional

 Score = 83.7 bits (206), Expect = 2e-22
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 13/104 (12%)

Query: 7   STTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SR 53
           +T  D KKKR K    +Y +YIFKVL Q++ D GIS K+M IMN+             SR
Sbjct: 13  ATGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASR 72

Query: 54  LARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           L +Y ++ T++SREIQT +RLVL GELAKH  SEGTKAVTKF S
Sbjct: 73  LCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKFTS 116

Length = 117

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 46.0 bits (110), Expect = 4e-08
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 18 KKSIKTYKIYIFKVLNQI----YLDIGISSKAMGIMN-------------TSRLARYKKK 60
             +   K+   +V+ ++    Y ++ ISSKA   +                 LAR+ K+
Sbjct: 1  SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 61 PTITSREIQTIVRLV 75
           TIT R+IQ  VRL 
Sbjct: 61 KTITPRDIQLAVRLD 75

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PLN00158	116	histone H2B; Provisional	100.0
PTZ00463	117	histone H2B; Provisional	100.0
smart00427	89	H2B Histone H2B.	100.0
KOG1744	127	consensus Histone H2B [Chromatin structure and dyn	100.0
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.14
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	96.75
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	96.45
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	96.23
smart00428	105	H3 Histone H3.	94.76
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	93.25
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	92.23
smart00803	65	TAF TATA box binding protein associated factor. TA	90.82
KOG0870	172	consensus DNA polymerase epsilon, subunit D [Trans	90.49
KOG0869	168	consensus CCAAT-binding factor, subunit A (HAP3) [	88.06
PLN00121	136	histone H3; Provisional	86.39
PTZ00018	136	histone H3; Provisional	84.73
KOG0871	156	consensus Class 2 transcription repressor NC2, bet	80.21

>PLN00158 histone H2B; Provisional

Probab=100.00  E-value=8.2e-47  Score=266.31  Aligned_cols=89  Identities=69%  Similarity=0.921  Sum_probs=84.2

Q ss_pred             CccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhc
Q 037475           10 GDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVL   76 (98)
Q Consensus        10 ~~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlL   76 (98)
                      ...++++++++.|+|++||||||||||||+|||++||+||||             ++|++||+++|||+||||+||||+|
T Consensus        15 ~~~~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvL   94 (116)
T PLN00158         15 KGAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLIL   94 (116)
T ss_pred             ccccccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhc
Confidence            334567778889999999999999999999999999999999             9999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhhhhcccCC
Q 037475           77 LGELAKHVASEGTKAVTKFASF   98 (98)
Q Consensus        77 PgeLaKhAvseGtkAV~ky~s~   98 (98)
                      ||||+||||+||++||++|+++
T Consensus        95 pgELaKhAvsEGtkAv~k~~~~  116 (116)
T PLN00158         95 PGELAKHAVSEGTKAVTKFTSA  116 (116)
T ss_pred             cHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999985

>PTZ00463 histone H2B; Provisional

Probab=100.00  E-value=1.1e-46  Score=265.82  Aligned_cols=90  Identities=62%  Similarity=0.876  Sum_probs=84.1

Q ss_pred             CCCccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475            8 TTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus         8 ~~~~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      +..++++++++++.|+|++||||||||||||+|||++||+||||             ++|++||+++|||+|||||||||
T Consensus        14 ~~~~~~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrL   93 (117)
T PTZ00463         14 TGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRL   93 (117)
T ss_pred             CCCCccccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhh
Confidence            34444566778889999999999999999999999999999999             99999999999999999999999


Q ss_pred             hchhHHHHHHHhhhhhhhhcccC
Q 037475           75 VLLGELAKHVASEGTKAVTKFAS   97 (98)
Q Consensus        75 lLPgeLaKhAvseGtkAV~ky~s   97 (98)
                      +|||||+||||+||++||++|++
T Consensus        94 lLpGELaKhAvsEGtkAv~k~~~  116 (117)
T PTZ00463         94 VLPGELAKHAVSEGTKAVTKFTS  116 (117)
T ss_pred             cccHHHHHhhhhHHHHHHHHhhc
Confidence            99999999999999999999986

>smart00427 H2B Histone H2B

Probab=100.00  E-value=9.8e-45  Score=245.98  Aligned_cols=76  Identities=71%  Similarity=0.989  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHhhh
Q 037475           22 KTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEG   88 (98)
Q Consensus        22 esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvseG   88 (98)
                      |+|++||||||||||||+|||++||+||||             ++|++||+|+|||+||||+||||+|||||+||||+||
T Consensus         1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEg   80 (89)
T smart00427        1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEG   80 (89)
T ss_pred             CcHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHH
Confidence            689999999999999999999999999999             9999999999999999999999999999999999999


Q ss_pred             hhhhhcccC
Q 037475           89 TKAVTKFAS   97 (98)
Q Consensus        89 tkAV~ky~s   97 (98)
                      +|||+||++
T Consensus        81 tkAv~k~~~   89 (89)
T smart00427       81 TKAVTKYSS   89 (89)
T ss_pred             HHHHHhhcC
Confidence            999999985

>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-39  Score=232.22  Aligned_cols=89  Identities=60%  Similarity=0.858  Sum_probs=84.2

Q ss_pred             CccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhc
Q 037475           10 GDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVL   76 (98)
Q Consensus        10 ~~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlL   76 (98)
                      ++.+|++..++.|+|+.||||||||||||+|||++||+||||             ++|++||+|+||++||||+||||+|
T Consensus        25 kk~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLll  104 (127)
T KOG1744|consen   25 KKAGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLL  104 (127)
T ss_pred             ccccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhC
Confidence            334567788999999999999999999999999999999999             9999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhhhhcccCC
Q 037475           77 LGELAKHVASEGTKAVTKFASF   98 (98)
Q Consensus        77 PgeLaKhAvseGtkAV~ky~s~   98 (98)
                      ||||++||++||++||++|+++
T Consensus       105 Pgel~khA~seGtkav~ky~~s  126 (127)
T KOG1744|consen  105 PGELAKHAVSEGTKAVTKYTSS  126 (127)
T ss_pred             chHHhhhhhcccchhheeeccC
Confidence            9999999999999999999875

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.14  E-value=1.3e-11  Score=78.20  Aligned_cols=56  Identities=34%  Similarity=0.371  Sum_probs=51.7

Q ss_pred             ccchhHHHHHHHHhhhhcCC----CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           19 KSIKTYKIYIFKVLNQIYLD----IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        19 ~r~esy~~YI~kVLKqVhpd----~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      ++...+..||.|++++++++    ..||++||.+|++             ..++.++||.||+++|||.|+|+
T Consensus         2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~   74 (75)
T PF00125_consen    2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI   74 (75)
T ss_dssp             HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred             cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence            35677899999999999999    8999999999998             88899999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=96.75  E-value=0.0015  Score=40.46  Aligned_cols=45  Identities=20%  Similarity=0.352  Sum_probs=36.2

Q ss_pred             HHHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHH
Q 037475           27 YIFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV   72 (98)
Q Consensus        27 YI~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAv   72 (98)
                      =|.|++|+. ||. .||++|...|.-             ...+..++|+||+.+||..||
T Consensus         7 ~vkri~k~~-~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen    7 RVKRIMKSD-PDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHHT-STTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHHhccC-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            478999999 775 599999988876             556668999999999999986

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.45  E-value=0.0054  Score=39.41  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=40.3

Q ss_pred             HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      +...++++.|+..++..|...|-.             ..||.+.++.||..+|||-+++-
T Consensus         7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981           7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            567899999999999988865533             89999999999999999998763

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=96.23  E-value=0.004  Score=42.52  Aligned_cols=50  Identities=18%  Similarity=0.257  Sum_probs=43.8

Q ss_pred             HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchh
Q 037475           28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLG   78 (98)
Q Consensus        28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPg   78 (98)
                      |-|++|++-++ .+|..|...|+-             ..+|.+.+|.|++..||+.|.+.+.+.
T Consensus        25 v~Ri~r~~~~~-Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          25 VRRILRKAGAE-RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             HHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence            77889998888 999999887776             788899999999999999999987654

>smart00428 H3 Histone H3

Probab=94.76  E-value=0.052  Score=37.90  Aligned_cols=55  Identities=20%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             chhHHHHHHHHhhhhcC--CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           21 IKTYKIYIFKVLNQIYL--DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        21 ~esy~~YI~kVLKqVhp--d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      +-.|+.-+..+..+..+  |..+++.|+..|..             ..++.+.||.||.++|||-|.|+-
T Consensus        32 k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir  101 (105)
T smart00428       32 KAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR  101 (105)
T ss_pred             cccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence            44678888888888777  88999999876655             556789999999999999998753

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=93.25  E-value=0.075  Score=37.48  Aligned_cols=48  Identities=27%  Similarity=0.220  Sum_probs=36.3

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .=|+|.||+-.--..||..|.--|-.             .+.++.+++.+||+++|+.|++
T Consensus        24 ~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~   84 (115)
T cd00074          24 GRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR   84 (115)
T ss_pred             HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence            34899998854446777665533222             7788999999999999999987

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=92.23  E-value=0.14  Score=32.95  Aligned_cols=46  Identities=17%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             HHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        28 I~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      +...++||-|+..+...+.++|-.             ++||++.+..||..+|||....
T Consensus         5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen    5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            566889999999999888765533             9999999999999999997643

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>smart00803 TAF TATA box binding protein associated factor

Probab=90.82  E-value=0.26  Score=31.28  Aligned_cols=46  Identities=22%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      -|.++.+...=+ .||..+..-+-.             ..++++.+|.|||..||-.|++
T Consensus         7 ~i~ria~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803        7 TIKDVAESLGIG-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             HHHHHHHHCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            355666655322 466666553333             7788899999999999988853

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]

Probab=90.49  E-value=0.42  Score=36.22  Aligned_cols=51  Identities=16%  Similarity=0.323  Sum_probs=40.9

Q ss_pred             HHHHHHHhhhhcCC--CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           25 KIYIFKVLNQIYLD--IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        25 ~~YI~kVLKqVhpd--~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      ..-|-|+.|.+-|+  ..||++|...|--             ..+|+-++|+||++.||-.|.+-+
T Consensus        13 ~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Ei   78 (172)
T KOG0870|consen   13 NAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEI   78 (172)
T ss_pred             HHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence            34577888888776  5899988875533             778899999999999999998754

>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]

Probab=88.06  E-value=0.59  Score=35.29  Aligned_cols=47  Identities=15%  Similarity=0.190  Sum_probs=39.5

Q ss_pred             HHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           28 IFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        28 I~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      |-|+.|+.-|.. .||+.|-..|--             +..|+..||+||+..||-.|+--
T Consensus        38 V~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t   98 (168)
T KOG0869|consen   38 VSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST   98 (168)
T ss_pred             HHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            778999998875 599888877744             77888999999999999999754

>PLN00121 histone H3; Provisional

Probab=86.39  E-value=1  Score=32.88  Aligned_cols=52  Identities=19%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      .|...+..+.....++.-+.+.|+.-|--             ...+.+.||-||.++|||-|.||
T Consensus        67 pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PLN00121         67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             cHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence            45666666666667778888888765543             44556899999999999999875

>PTZ00018 histone H3; Provisional

Probab=84.73  E-value=1.4  Score=32.11  Aligned_cols=52  Identities=19%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      .|...+..+..+..++.-+.+.|+..|-.             ...+.+.||-||..+|||-|.||
T Consensus        67 pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PTZ00018         67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             cHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence            45556666666666778888888765543             34456899999999999999875

>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]

Probab=80.21  E-value=2.3  Score=31.81  Aligned_cols=54  Identities=15%  Similarity=0.289  Sum_probs=44.8

Q ss_pred             HHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhH
Q 037475           26 IYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGE   79 (98)
Q Consensus        26 ~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPge   79 (98)
                      --|.|++|.+-| |..+..+|-++++.             ..+|.-..++||.+..|+.|..-|==||
T Consensus        16 Atv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~e   83 (156)
T KOG0871|consen   16 ATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGE   83 (156)
T ss_pred             HHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHH
Confidence            358899999999 99999999987755             6777889999999999999987553343

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3a6n_D	129	The Nucleosome Containing A Testis-Specific Histone		5e-23
2hio_B	125	Histone Octamer (Chicken), Chromosomal Protein Leng		5e-23
1eqz_B	126	X-Ray Structure Of The Nucleosome Core Particle At		5e-23
1u35_D	126	Crystal Structure Of The Nucleosome Core Particle C		6e-23
2cv5_D	126	Crystal Structure Of Human Nucleosome Core Particle		7e-23
2xql_B	90	Fitting Of The H2a-H2b Histones In The Electron Mic		1e-22
1p34_D	125	Crystallographic Studies Of Nucleosome Core Particl		3e-22
1kx3_D	125	X-Ray Structure Of The Nucleosome Core Particle, Nc		3e-22
3c9k_B	125	Model Of Histone Octamer Tubular Crystals Length =		3e-22
1zla_D	125	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		3e-22
1f66_D	126	2.6 A Crystal Structure Of A Nucleosome Core Partic		3e-22
3c1b_D	125	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		3e-22
2pyo_D	122	Drosophila Nucleosome Core Length = 122		3e-22
1s32_D	122	Molecular Recognition Of The Nucleosomal 'supergroo		3e-22
2f8n_H	123	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		3e-22
1aoi_D	99	Complex Between Nucleosome Core Particle (H3,H4,H2a		5e-22
3kwq_D	93	Structural Characterization Of H3k56q Nucleosomes A		6e-22
2nqb_D	123	Drosophila Nucleosome Structure Length = 123		2e-21
3an2_D	129	The Structure Of The Centromeric Nucleosome Contain		2e-21
1hio_B	90	Histone Octamer (Chicken), Chromosomal Protein, Alp		2e-21
1id3_D	130	Crystal Structure Of The Yeast Nucleosome Core Part		2e-19
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		5e-18

>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 129

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAMGIMN+             SRLA Y K+ TITSREIQT V
Sbjct: 43  IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 102
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 103 RLLLPGELAKHAVSEGTKAVTKYTS 127

>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein Length = 125

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAMGIMN+             SRLA Y K+ TITSREIQT V
Sbjct: 39  IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 99  RLLLPGELAKHAVSEGTKAVTKYTS 123

>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 126

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAMGIMN+             SRLA Y K+ TITSREIQT V
Sbjct: 40  IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 99
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124

>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 126

Iteration: 1
 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAMGIMN+             SRLA Y K+ TITSRE+QT V
Sbjct: 40  IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAV 99
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124

>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle Length = 126

Iteration: 1
 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           +Y++KVL Q++ D GISSKAMGIMN+             SRLA Y K+ TITSREIQT V
Sbjct: 40  VYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 99
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124

>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 90

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
          IY++KVL Q++ D GISSKAMGIMN+             SRLA Y K+ TITSREIQT V
Sbjct: 4  IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 63
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
          RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 64 RLLLPGELAKHAVSEGTKAVTKYTS 88

>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 125

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 39  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 99  RLLLPGELAKHAVSEGTKAVTKYTS 123

>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 125

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 39  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 99  RLLLPGELAKHAVSEGTKAVTKYTS 123

>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals Length = 125

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 39  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 99  RLLLPGELAKHAVSEGTKAVTKYTS 123

>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 125

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 39  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 99  RLLLPGELAKHAVSEGTKAVTKYTS 123

>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 126

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 40  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 99
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 100 RLLLPGELAKHAVSEGTKAVTKYTS 124

>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 125

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 39  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 99  RLLLPGELAKHAVSEGTKAVTKYTS 123

>pdb|2PYO|D Chain D, Drosophila Nucleosome Core Length = 122

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IYI+KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 36  IYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAV 95
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 96  RLLLPGELAKHAVSEGTKAVTKYTS 120

>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 122

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 36  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 95
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 96  RLLLPGELAKHAVSEGTKAVTKYTS 120

>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 123

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 37  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 96
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 97  RLLLPGELAKHAVSEGTKAVTKYTS 121

>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 99

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
          IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 13 IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 72
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
          RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 73 RLLLPGELAKHAVSEGTKAVTKYTS 97

>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 93

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
          IY++KVL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 7  IYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 66
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
          RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 67 RLLLPGELAKHAVSEGTKAVTKYTS 91

>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 59/85 (69%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IYI+ VL Q++ D GISSKAM IMN+             SRLA Y K+ TITSREIQT V
Sbjct: 37  IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAV 96
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 97  RLLLPGELAKHAVSEGTKAVTKYTS 121

>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 129

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 59/85 (69%), Gaps = 13/85 (15%)
Query: 26  IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
           IY++KVL Q++ D GISSKA GI N+             SRLA Y K+ TITSREIQT V
Sbjct: 43  IYVYKVLKQVHPDTGISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 102
Query: 73  RLVLLGELAKHVASEGTKAVTKFAS 97
           RL+L GELAKH  SEGTKAVTK+ S
Sbjct: 103 RLLLPGELAKHAVSEGTKAVTKYTS 127

>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 90

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 59/85 (69%), Gaps = 13/85 (15%)
Query: 26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV 72
          IY++KVL Q++ D GISSKAMG MN+             SRLA Y K+ TITSREIQT V
Sbjct: 4  IYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQTAV 63
Query: 73 RLVLLGELAKHVASEGTKAVTKFAS 97
          RL+L GELAKH  SEGTKAVTK  S
Sbjct: 64 RLLLPGELAKHAVSEGTKAVTKHTS 88

>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 130

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 13/84 (15%)
Query: 27  YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73
           YI+KVL Q + D GIS K+M I+N+             S+LA Y KK TI++REIQT VR
Sbjct: 43  YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 102
Query: 74  LVLLGELAKHVASEGTKAVTKFAS 97
           L+L GELAKH  SEGT+AVTK++S
Sbjct: 103 LILPGELAKHAVSEGTRAVTKYSS 126

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 13/82 (15%)
Query: 27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR 73
          YI+KVL Q + D GIS K+M I+N+             S+LA Y KK TI++REIQT VR
Sbjct: 8  YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67
Query: 74 LVLLGELAKHVASEGTKAVTKF 95
          L+L GELAKH  SEGT+AVTK+
Sbjct: 68 LILPGELAKHAVSEGTRAVTKY 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	6e-21
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	3e-20
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Length = 123

 Score = 79.4 bits (195), Expect = 6e-21
 Identities = 56/104 (53%), Positives = 67/104 (64%), Gaps = 13/104 (12%)

Query: 7   STTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SR 53
                  KK+ +K  ++Y IYI+ VL Q++ D GISSKAM IMN+             SR
Sbjct: 18  KNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASR 77

Query: 54  LARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           LA Y K+ TITSREIQT VRL+L GELAKH  SEGTKAVTK+ S
Sbjct: 78  LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 121

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Length = 126

 Score = 77.9 bits (191), Expect = 3e-20
 Identities = 59/104 (56%), Positives = 69/104 (66%), Gaps = 13/104 (12%)

Query: 7   STTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SR 53
            T     KKR K   ++Y IY++KVL Q++ D GISSKAMGIMN+             SR
Sbjct: 21  KTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR 80

Query: 54  LARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVTKFAS 97
           LA Y K+ TITSREIQT VRL+L GELAKH  SEGTKAVTK+ S
Sbjct: 81  LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score = 58.7 bits (140), Expect = 3e-12
 Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 13/86 (15%)

Query: 23 TYKIYIFKVLNQIYLDIGISSKAMGIMN-------------TSRLARYKKKPTITSREIQ 69
          TY  YI+KVL Q + D GIS K+M I+N              S+LA Y KK TI++REIQ
Sbjct: 4  TYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQ 63

Query: 70 TIVRLVLLGELAKHVASEGTKAVTKF 95
          T VRL+L GELAKH  SEGT+AVTK+
Sbjct: 64 TAVRLILPGELAKHAVSEGTRAVTKY 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 1   EEIPEESTTGDKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNTSRLARYKKK 60
           +           K    +K  K   I I      IYL++ +  +    ++ S +  Y   
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIP 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	100.0
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	100.0
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	99.98
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	99.18
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.18
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	97.4
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.03
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	96.18
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	95.98
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	95.78
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	95.74
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	95.65
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	95.17
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	95.07
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	94.78
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	94.51
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	94.5
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	94.34
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	94.16
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	93.91
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	93.89
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	93.84
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	93.43
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	93.12
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	92.89
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	92.69
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	92.67
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	92.35
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	91.7
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	91.16
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	91.1
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	91.01
3r45_A	156	Histone H3-like centromeric protein A; histone fol	90.46
1taf_B	70	TFIID TBP associated factor 62; transcription init	90.41
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	89.92
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	86.28

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=100.00  E-value=9.1e-47  Score=267.33  Aligned_cols=88  Identities=64%  Similarity=0.871  Sum_probs=79.4

Q ss_pred             ccccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhch
Q 037475           11 DKKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLL   77 (98)
Q Consensus        11 ~~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLP   77 (98)
                      +.++++++++.|+|++||||||||||||+|||++||+||||             ++|++||+|+|||+||||+|||||||
T Consensus        22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp  101 (123)
T 2nqb_D           22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP  101 (123)
T ss_dssp             -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred             CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence            34566778899999999999999999999999999999999             99999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhhcccCC
Q 037475           78 GELAKHVASEGTKAVTKFASF   98 (98)
Q Consensus        78 geLaKhAvseGtkAV~ky~s~   98 (98)
                      ||||||||+||++||++|+++
T Consensus       102 GELaKhAvseGtkAV~ky~ss  122 (123)
T 2nqb_D          102 GELAKHAVSEGTKAVTKYTSS  122 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999875

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=100.00  E-value=8.7e-47  Score=268.32  Aligned_cols=87  Identities=67%  Similarity=0.906  Sum_probs=77.7

Q ss_pred             cccccccccchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchh
Q 037475           12 KKKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLG   78 (98)
Q Consensus        12 ~~kk~~~~r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPg   78 (98)
                      +++++++++.++|++||||||||||||+|||++||+||||             ++|++||+|+|||+||||+||||||||
T Consensus        26 ~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG  105 (126)
T 1tzy_B           26 GDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG  105 (126)
T ss_dssp             --------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH
T ss_pred             CCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH
Confidence            3466778899999999999999999999999999999999             999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhcccCC
Q 037475           79 ELAKHVASEGTKAVTKFASF   98 (98)
Q Consensus        79 eLaKhAvseGtkAV~ky~s~   98 (98)
                      |||||||+||++||++|+++
T Consensus       106 ELaKhAvseGtkAV~ky~ss  125 (126)
T 1tzy_B          106 ELAKHAVSEGTKAVTKYTSS  125 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999875

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=99.98  E-value=2e-33  Score=208.63  Aligned_cols=78  Identities=62%  Similarity=0.871  Sum_probs=75.1

Q ss_pred             cchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHh
Q 037475           20 SIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVAS   86 (98)
Q Consensus        20 r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvs   86 (98)
                      ++|+|+.||||||||||||++||++||++||+             ++|+++++++|||+||||+||||+|||||+|||++
T Consensus         1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~   80 (192)
T 2jss_A            1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS   80 (192)
T ss_dssp             CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred             CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            46899999999999999999999999999999             88999999999999999999999999999999999


Q ss_pred             hhhhhhhcccC
Q 037475           87 EGTKAVTKFAS   97 (98)
Q Consensus        87 eGtkAV~ky~s   97 (98)
                      ||++||++|++
T Consensus        81 eG~kAv~k~~~   91 (192)
T 2jss_A           81 EGTRAVTKYSS   91 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhcc
Confidence            99999999953

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=99.18  E-value=8.5e-12  Score=80.20  Aligned_cols=53  Identities=9%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhch
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLL   77 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLP   77 (98)
                      ..+|+|++||+|||.+||++|+.+|+.             ..+|+.++|.||+++||+.|++.+|-
T Consensus         7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~   72 (76)
T 3b0c_W            7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK   72 (76)
T ss_dssp             HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999988             68888999999999999999999874

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.18  E-value=6e-07  Score=55.70  Aligned_cols=48  Identities=17%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      =|.|++|++ ++..||+.|+..|..             ...+.+.+|.||+++|||.|++.|
T Consensus         7 ~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A            7 PIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             HHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            378999999 889999999988876             567789999999999999998865

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=97.40  E-value=9.4e-05  Score=53.44  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchh
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLG   78 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPg   78 (98)
                      =|.|++|+. ....||+.|...|..             ..++++.+|+||+++||+.|++..||.
T Consensus        87 ~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~  150 (154)
T 1f1e_A           87 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK  150 (154)
T ss_dssp             HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence            388999998 678999999987766             889999999999999999999999993

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.03  E-value=0.0009  Score=58.92  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             chhHHHHHHHHhhhhcCCCCchHHHHHhhhh------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHhhhhhhhh
Q 037475           21 IKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVT   93 (98)
Q Consensus        21 ~esy~~YI~kVLKqVhpd~gISskam~imns------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvseGtkAV~   93 (98)
                      ..-|-.-|+|||.||||++.|.-.|..-+++      +.||.   ....|..|++.+|.-.+|..|.+.|+.++..|+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (1049)
T 3ksy_A           20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ---AQPRSASDVEERVQKSFPHPIDKWAIADAQSAIE   95 (1049)
T ss_dssp             SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH---TCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence            4568888999999999999999999999988      66765   7888999999999999999999999999877643

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=96.18  E-value=0.0043  Score=40.35  Aligned_cols=48  Identities=15%  Similarity=0.174  Sum_probs=40.1

Q ss_pred             HHHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .=|.|+.|..-|| ..||+.|...|.-             ...+...+|.||+..||+.|++
T Consensus        12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A           12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            3488999999775 6799998877655             4566789999999999999997

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=95.98  E-value=0.0041  Score=38.53  Aligned_cols=47  Identities=13%  Similarity=0.226  Sum_probs=37.6

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .-|.|++|.. ....||+.|...+--             ...+.+.+|.||+.+||+.|++
T Consensus        10 a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A           10 APVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            3578889986 467889888765433             6778899999999999999975

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=95.78  E-value=0.01  Score=43.76  Aligned_cols=50  Identities=12%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      ..=|.|++|.+-|+..||.+|...|.-             ..+|...+|+||+..||..|+.-
T Consensus        18 ~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~   80 (179)
T 1jfi_B           18 RAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES   80 (179)
T ss_dssp             HHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence            345899999999989999999987755             56677899999999999999874

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=95.74  E-value=0.0053  Score=41.00  Aligned_cols=50  Identities=16%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      .--|.|+++..-. ..||..|..-+..             ..++++.+|.||+++||+.|++-+
T Consensus        32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           32 KPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            3458899998866 5788887765444             778889999999999999999855

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=95.65  E-value=0.0057  Score=40.78  Aligned_cols=50  Identities=14%  Similarity=0.039  Sum_probs=40.7

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      .--|.|+++..-. ..||..|..-+..             ..++++.+|.||+++||+.|++-+
T Consensus        32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            4568999999876 5788887765443             778889999999999999999854

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=95.17  E-value=0.011  Score=38.97  Aligned_cols=47  Identities=19%  Similarity=0.167  Sum_probs=36.9

Q ss_pred             HHHHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .=|.|++|.- |+. .||..|--.|.-             ...+..++|.||+.+||+.||+
T Consensus        23 arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~   83 (97)
T 1n1j_B           23 ARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT   83 (97)
T ss_dssp             HHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence            3488999986 775 588877765544             5566789999999999999986

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=95.07  E-value=0.02  Score=39.68  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             HHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           27 YIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        27 YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      -|.|++|++-|| ..||..|...|.-             ..++...+|+||+..||..|+.-+
T Consensus        14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l   76 (128)
T 2byk_B           14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   76 (128)
T ss_dssp             HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence            388999998886 6799999887765             556778999999999999998754

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=94.78  E-value=0.029  Score=36.23  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             hHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           23 TYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        23 sy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      .|..-+..+.....+|..+++.|+..+--             ..++.+.||.||.++|||-|.|+
T Consensus         8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri   72 (77)
T 2hue_B            8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI   72 (77)
T ss_dssp             HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence            45555555555556788899998865533             55678999999999999999885

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=94.51  E-value=0.016  Score=39.53  Aligned_cols=47  Identities=21%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             HHHHHHhhhhcCCC-CchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDI-GISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~-gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .=|.|++|.. ||. .||+.|.-.+.-             ...|+-++|+||+.+||+.||+
T Consensus        45 aRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~  105 (119)
T 4g92_C           45 ARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS  105 (119)
T ss_dssp             HHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence            3488999876 664 588777655543             5567789999999999999986

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=94.50  E-value=0.022  Score=39.29  Aligned_cols=48  Identities=23%  Similarity=0.138  Sum_probs=37.9

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|+|+||...---.||..|--.|-.             ...++.+++.+|++++||.|++
T Consensus        26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~   86 (120)
T 2f8n_G           26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   86 (120)
T ss_dssp             HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            46999999986555788776543332             6778889999999999999998

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=94.34  E-value=0.025  Score=39.17  Aligned_cols=48  Identities=23%  Similarity=0.221  Sum_probs=38.0

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|+|+||+..---.||..|.-.|..             ...++.+++.+|++++||.|++
T Consensus        27 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   87 (123)
T 2nqb_C           27 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR   87 (123)
T ss_dssp             HHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence            57999999974444788776643333             6677889999999999999998

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=94.16  E-value=0.045  Score=35.75  Aligned_cols=52  Identities=12%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             hHHHHHHHHhhhhc--CCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           23 TYKIYIFKVLNQIY--LDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        23 sy~~YI~kVLKqVh--pd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      .|..-+..+-.+..  .|..+++.|+..+--             ...|.+.||.||.++|||-|.|+
T Consensus         8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri   74 (82)
T 3nqj_A            8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI   74 (82)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence            45555555554444  367888888875533             45567889999999999999986

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=93.91  E-value=0.035  Score=38.69  Aligned_cols=48  Identities=21%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|+|+||...---.||..|.-.|..             ...++.+++.+|++++||.|++
T Consensus        29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   89 (129)
T 1tzy_A           29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (129)
T ss_dssp             HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            46999999964444788776643333             6778889999999999999998

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=93.89  E-value=0.025  Score=39.53  Aligned_cols=49  Identities=24%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      -..|+|+||...---.||..|.-.|-.             ...++.+++.+|++++||.|++
T Consensus        28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~   89 (131)
T 1id3_C           28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (131)
T ss_dssp             HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            357999999864334677665543322             6778889999999999999998

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=93.84  E-value=0.047  Score=39.22  Aligned_cols=48  Identities=13%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      =|-|++|+.-|+..||..|-.-+..             ..++...+|+||+..||..|+.-
T Consensus         9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~   69 (154)
T 1f1e_A            9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV   69 (154)
T ss_dssp             HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence            3789999998899999988765544             77889999999999999999844

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=93.43  E-value=0.038  Score=39.60  Aligned_cols=48  Identities=21%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|+|+||...---.|+..|.-.|-.             ...++.+++.+|++++||.|++
T Consensus        48 grI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~  108 (149)
T 2f8n_K           48 GRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR  108 (149)
T ss_dssp             HHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence            46999999974444777766543332             6778889999999999999998

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=93.12  E-value=0.052  Score=37.80  Aligned_cols=48  Identities=19%  Similarity=0.115  Sum_probs=36.1

Q ss_pred             HHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|+|+||.... ...||+.|.-.|-.             ...++.+++.+|++++||.||+
T Consensus        31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~   92 (128)
T 1f66_C           31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   92 (128)
T ss_dssp             HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            469999998753 23577665533322             6778899999999999999998

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=92.89  E-value=0.067  Score=36.19  Aligned_cols=49  Identities=10%  Similarity=0.253  Sum_probs=39.7

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      ...|.|+.|.. ....||..+...+..             ..++++.+|+||+..||..|++-
T Consensus        10 ~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr   71 (111)
T 3b0c_T           10 SSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR   71 (111)
T ss_dssp             CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            34678887776 678899988875544             66788999999999999999874

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=92.69  E-value=0.077  Score=35.70  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhhhhcC---CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           23 TYKIYIFKVLNQIYL---DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        23 sy~~YI~kVLKqVhp---d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      -|..-+..+.....+   |..+++.|+..+--             ..+|.+.||.||.++|||-|.|+
T Consensus        32 PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri   99 (100)
T 2yfv_A           32 PFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI   99 (100)
T ss_dssp             HHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence            445445555444444   67888888865533             55678999999999999999875

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=92.67  E-value=0.11  Score=36.83  Aligned_cols=51  Identities=20%  Similarity=0.263  Sum_probs=37.9

Q ss_pred             HHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           24 YKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        24 y~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      |..-|..+.....+|..+++.|+..|--             ..++.+.+|.||.++|||-|.|+
T Consensus        68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri  131 (136)
T 1tzy_C           68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_dssp             HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence            4444444444446788999998865533             55678999999999999999885

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=92.35  E-value=0.073  Score=35.52  Aligned_cols=50  Identities=16%  Similarity=0.069  Sum_probs=39.7

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      .-.|.|+.+..-. ..||..+...+..             ..++++.+|.|||..||..|++-+
T Consensus        31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            4568899998743 5688887765544             778889999999999999998854

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=91.70  E-value=0.043  Score=36.20  Aligned_cols=48  Identities=10%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             HHHHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           25 KIYIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        25 ~~YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      -.=|.|++|. .|| ..||..|--.+.-             ...++.+++.||+.+||+.||+
T Consensus        14 vaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~   75 (98)
T 1jfi_A           14 PARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   75 (98)
T ss_dssp             HHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             hHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence            3458899997 566 4588776654443             5667789999999999999986

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=91.16  E-value=0.13  Score=37.46  Aligned_cols=48  Identities=25%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             HHHHHHhhhhcC-CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYL-DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhp-d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|+|.||...- ...|+..|.-.|-.             ...++.+++.+|++++||.|++
T Consensus       109 ~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~  170 (192)
T 2jss_A          109 GRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR  170 (192)
T ss_dssp             HHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            469999998733 34577665533322             6778889999999999999998

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=91.10  E-value=0.14  Score=36.45  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             CCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           38 DIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        38 d~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      |..+++.|+..|--             ..+|.+.+|.||..+|||-|.|+-
T Consensus        83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir  133 (140)
T 3nqu_A           83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR  133 (140)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence            67788888865533             445678899999999999999863

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=91.01  E-value=0.073  Score=34.11  Aligned_cols=50  Identities=14%  Similarity=0.039  Sum_probs=38.0

Q ss_pred             HHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           25 KIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        25 ~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      .-.|.|+.+..-. ..||..+...+..             ..++++.+|+||+..||..|++-+
T Consensus        13 ~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C           13 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            3457888887743 5688777654433             778889999999999999997743

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=90.46  E-value=0.14  Score=37.19  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             HHHHhhhhc------CCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           28 IFKVLNQIY------LDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        28 I~kVLKqVh------pd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      |-|+++++-      .|..+++.|+..|--             ..+|.+.+|.||..+|||-|.|+
T Consensus        83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI  148 (156)
T 3r45_A           83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI  148 (156)
T ss_dssp             HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence            445555554      256688888765533             44556789999999999999986

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=90.41  E-value=0.24  Score=31.26  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=33.6

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      .|.++.+++-= ..+|.++...+-.             .+++++.+|.|||..||..|+++
T Consensus        11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            35566666532 2566666655433             88999999999999999999764

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=89.92  E-value=0.31  Score=31.26  Aligned_cols=46  Identities=13%  Similarity=0.321  Sum_probs=38.0

Q ss_pred             HHHHhhhhcCCCCchHHHHHhh----h----h-----ccccccCCCCCCChHHHHHHHH
Q 037475           28 IFKVLNQIYLDIGISSKAMGIM----N----T-----SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        28 I~kVLKqVhpd~gISskam~im----n----s-----~~La~~~kr~TltsreIqtAvr   73 (98)
                      +...++||-|...|...+.+.+    |    +     ++||.+.+..||..+|||....
T Consensus        11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   69 (76)
T 1h3o_B           11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   69 (76)
T ss_dssp             HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            5678999999999998877533    2    2     9999999999999999997643

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=86.28  E-value=0.41  Score=33.60  Aligned_cols=47  Identities=11%  Similarity=0.236  Sum_probs=32.2

Q ss_pred             HHHHHHhhhhcCCCC-chHHHHHhhhh-------------cccc-ccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIG-ISSKAMGIMNT-------------SRLA-RYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~g-ISskam~imns-------------~~La-~~~kr~TltsreIqtAvr   73 (98)
                      .=|.|++|.- |+.+ ||..|.-+|.-             ...+ .-++|.||+.++|..||.
T Consensus        23 aRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~   84 (140)
T 2byk_A           23 SRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   84 (140)
T ss_dssp             ------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             HHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence            3488888886 8854 78777665544             4556 789999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1tzyb_	92	a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus)	9e-29
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	8e-10
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	2e-05

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 92

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score = 97.1 bits (242), Expect = 9e-29
 Identities = 54/88 (61%), Positives = 62/88 (70%), Gaps = 13/88 (14%)

Query: 23 TYKIYIFKVLNQIYLDIGISSKAMGIMN-------------TSRLARYKKKPTITSREIQ 69
          +Y IY++KVL Q++ D GISSKAMGIMN              SRLA Y K+ TITSREIQ
Sbjct: 4  SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 63

Query: 70 TIVRLVLLGELAKHVASEGTKAVTKFAS 97
          T VRL+L GELAKH  SEGTKAVTK+ S
Sbjct: 64 TAVRLLLPGELAKHAVSEGTKAVTKYTS 91

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 8e-10
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 13 KKKRAKKSIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT---SRLARYKKKPTITSREIQ 69
           ++ A K        + KV  Q++  +  +  A+  +       L    +    ++ +++
Sbjct: 7  SEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVE 66

Query: 70 TIVRLVLLGELAKHVASEGTKAVTK 94
            V+      + K   ++   A+ K
Sbjct: 67 ERVQKSFPHPIDKWAIADAQSAIEK 91

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 7/80 (8%), Positives = 25/80 (31%), Gaps = 13/80 (16%)

Query: 28 IFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL 74
          I ++  Q   +  +S  A   +                 +     K T+    ++ +  +
Sbjct: 7  IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66

Query: 75 VLLGELAKHVASEGTKAVTK 94
          +++  +  +      +A  +
Sbjct: 67 LMVEGVEDYDGELFGRATVR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	100.0
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.64
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.25
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	97.93
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	97.04
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	96.22
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	96.18
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	95.91
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	95.81
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	95.55
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	95.05
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	93.68
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	92.97
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	90.01
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	89.98
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	89.8
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	83.08
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	81.16

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=2e-46  Score=252.76  Aligned_cols=79  Identities=68%  Similarity=0.941  Sum_probs=77.2

Q ss_pred             cchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHh
Q 037475           20 SIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVAS   86 (98)
Q Consensus        20 r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvs   86 (98)
                      |+|+|++||||||||||||+|||++||+||||             ++|++||+|+|||+||||+||||+||||||||||+
T Consensus         1 R~esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeLaKhAvs   80 (92)
T d1tzyb_           1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS   80 (92)
T ss_dssp             CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHHHHHHHH
Confidence            57999999999999999999999999999999             89999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCC
Q 037475           87 EGTKAVTKFASF   98 (98)
Q Consensus        87 eGtkAV~ky~s~   98 (98)
                      ||+|||++|++|
T Consensus        81 eGtkAv~ky~ss   92 (92)
T d1tzyb_          81 EGTKAVTKYTSS   92 (92)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhccC
Confidence            999999999986

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.8e-17  Score=117.56  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             cchhHHHHHHHHhhhhcCCCCchHHHHHhhhh------ccccccCCCCCCChHHHHHHHHHhchhHHHHHHHhhhhhhhh
Q 037475           20 SIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT------SRLARYKKKPTITSREIQTIVRLVLLGELAKHVASEGTKAVT   93 (98)
Q Consensus        20 r~esy~~YI~kVLKqVhpd~gISskam~imns------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhAvseGtkAV~   93 (98)
                      -+..|..||+|||+||||+++|+.+|+.+||+      ..|+   ...+.|.+|||.+|+++|||+|++||++++..++.
T Consensus        14 w~g~f~~~i~KVl~qvhP~l~i~~~Al~~i~~~i~~ll~~L~---~~~p~sv~dVe~~v~~~fp~~i~~~ai~~a~~~~~   90 (172)
T d1q9ca_          14 WRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLC---QAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIE   90 (172)
T ss_dssp             HTTSSHHHHHHHHHHHCSSSBCCHHHHHHHHHHHHHHHHHHH---TTCCCSTTHHHHHHHHSSCTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH---ccCCccHHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999      4454   68899999999999999999999999999999876


Q ss_pred             c
Q 037475           94 K   94 (98)
Q Consensus        94 k   94 (98)
                      .
T Consensus        91 s   91 (172)
T d1q9ca_          91 K   91 (172)
T ss_dssp             -
T ss_pred             c
Confidence            4

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.25  E-value=5.9e-13  Score=93.44  Aligned_cols=58  Identities=10%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhchhHHHHHH
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLLGELAKHV   84 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLPgeLaKhA   84 (98)
                      =|+|||||++|+.+||.+||++||+             ..|+.+++|+||+++|||.|++++++|++.+++
T Consensus         6 ~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~   76 (151)
T d1f1ea_           6 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYD   76 (151)
T ss_dssp             HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCC
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccccccc
Confidence            4899999999999999999999999             889999999999999999999999999998875

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.93  E-value=1.8e-06  Score=59.69  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHhch--hHH
Q 037475           24 YKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLVLL--GEL   80 (98)
Q Consensus        24 y~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLlLP--geL   80 (98)
                      ...+|.|++|... ...||++|...|..             ...+.+.+|.||+++||+.||...+|  |||
T Consensus        81 p~a~IkRi~k~~g-~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~~~~~~~~~  151 (151)
T d1f1ea_          81 GRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPKGGEL  151 (151)
T ss_dssp             CHHHHHHHHHHTT-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGGGGCC
T ss_pred             CHHHHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHcCCCcCCC
Confidence            3568999999643 45799999988876             77888999999999999999999999  876

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=97.04  E-value=0.00027  Score=42.08  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      .-|.|+.|...+ ..||.+|...+.-             ...+...+|+||+..||..|++.
T Consensus         7 a~I~ri~k~~~~-~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~   67 (68)
T d1htaa_           7 APIGRIIKNAGA-ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM   67 (68)
T ss_dssp             HHHHHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            468899998855 5799999987765             67788999999999999999875

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0025  Score=39.56  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=41.3

Q ss_pred             HHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           27 YIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        27 YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      =|.|+.|+.-|+ ..||++|...|..             ...+...+|+||+..||..|+.-+
T Consensus         7 ~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~   69 (87)
T d1n1ja_           7 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTL   69 (87)
T ss_dssp             HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHc
Confidence            378999998776 5699999987766             567788999999999999999864

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=96.18  E-value=0.0013  Score=38.90  Aligned_cols=47  Identities=13%  Similarity=0.222  Sum_probs=39.5

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .-|.|+.|...+ ..||++|...|.-             ...+...+|+||+..||..|++
T Consensus         6 a~I~rI~k~~~~-~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_           6 APVDRLIRKAGA-ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             HHHHHHHHHTTC-SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHhCcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            468899998754 5899999987765             6677899999999999999974

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0043  Score=41.49  Aligned_cols=49  Identities=12%  Similarity=0.251  Sum_probs=42.2

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      =|.|+.|..-|+..||..|...|.-             ...+...+|+||+..||..|+.-+
T Consensus         9 ~I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~   70 (135)
T d1jfib_           9 AINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL   70 (135)
T ss_dssp             HHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc
Confidence            4789999999999999999887755             566778999999999999999854

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.81  E-value=0.0042  Score=38.68  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             HHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHHh
Q 037475           28 IFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRLV   75 (98)
Q Consensus        28 I~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrLl   75 (98)
                      |.|+.|+.-|+ ..||++|...|.-             ...+.-++|+||+..||..|+.-+
T Consensus         5 i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~   66 (89)
T d2bykb1           5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   66 (89)
T ss_dssp             HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence            67899988766 6799999987765             456778999999999999998754

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=95.55  E-value=0.0055  Score=39.41  Aligned_cols=55  Identities=18%  Similarity=0.218  Sum_probs=47.0

Q ss_pred             cchhHHHHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           20 SIKTYKIYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        20 r~esy~~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      ++-.|...|..+.....+|..+++.|+..+-.             ..++.+.||.||+++||+-|.|+
T Consensus        23 pk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~Larri   90 (95)
T d1tzyc_          23 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI   90 (95)
T ss_dssp             CHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHHHHHHHH
Confidence            35678999999999999999999999976644             55667899999999999999885

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0034  Score=37.12  Aligned_cols=45  Identities=11%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             HHHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHH
Q 037475           27 YIFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIV   72 (98)
Q Consensus        27 YI~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAv   72 (98)
                      =|.|++|.. || ..||++|.-.|.-             ...+..++|.||+.+||..||
T Consensus         7 rVkkimk~~-~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ai   65 (66)
T d1jfia_           7 RIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI   65 (66)
T ss_dssp             HHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTC
T ss_pred             HHHHHHhcC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh
Confidence            378899986 55 5689888877655             667778999999999998875

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.019  Score=34.41  Aligned_cols=46  Identities=20%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             HHHHhhhhcCC-CCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHHH
Q 037475           28 IFKVLNQIYLD-IGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVRL   74 (98)
Q Consensus        28 I~kVLKqVhpd-~gISskam~imns-------------~~La~~~kr~TltsreIqtAvrL   74 (98)
                      |.|++|. .|| ..||++|.-+|.-             ...+..++|.||+.+||..||.-
T Consensus         6 VkrImK~-~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~   65 (78)
T d1n1jb_           6 IKKIMKL-DEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   65 (78)
T ss_dssp             HHHHHTT-STTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHhc-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence            6788885 577 5578888877755             55667899999999999999863

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.033  Score=38.98  Aligned_cols=47  Identities=15%  Similarity=0.190  Sum_probs=36.7

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      .-|.|+||+.+ ...||+.|.--|-.             +..++.+++.+||++||+-|++
T Consensus       103 ~rv~rlLk~~~-a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~  162 (172)
T d1q9ca_         103 EKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC  162 (172)
T ss_dssp             HHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred             HHHHHHHHhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence            35788899885 44688776643322             7888899999999999999987

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.1  Score=31.95  Aligned_cols=46  Identities=13%  Similarity=0.292  Sum_probs=37.6

Q ss_pred             HHHHHhhhhcCCCCchHHHHHhh----hh---------ccccccCCCCCCChHHHHHHH
Q 037475           27 YIFKVLNQIYLDIGISSKAMGIM----NT---------SRLARYKKKPTITSREIQTIV   72 (98)
Q Consensus        27 YI~kVLKqVhpd~gISskam~im----ns---------~~La~~~kr~TltsreIqtAv   72 (98)
                      -+...++||-|+..|...+-+++    |.         ++||.+.+..||..+|||--.
T Consensus         8 ~L~eLv~~idp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~L   66 (74)
T d1h3ob_           8 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL   66 (74)
T ss_dssp             HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            35667899999999998876533    22         999999999999999999654

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.078  Score=34.43  Aligned_cols=46  Identities=24%  Similarity=0.208  Sum_probs=35.1

Q ss_pred             HHHHhhhhcCCCCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHH
Q 037475           28 IFKVLNQIYLDIGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        28 I~kVLKqVhpd~gISskam~------------imns-~~La~~~kr~TltsreIqtAvr   73 (98)
                      |.|.||+-+....|++.|--            |+.- ++.++.+++.-|++|+||.|+|
T Consensus        17 i~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair   75 (106)
T d1u35c1          17 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   75 (106)
T ss_dssp             HHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence            77888886666666665542            2222 7788899999999999999987

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=89.80  E-value=0.094  Score=34.05  Aligned_cols=48  Identities=21%  Similarity=0.215  Sum_probs=35.9

Q ss_pred             HHHHHHhhhhcCCCCchHHHHHhhhh-------------ccccccCCCCCCChHHHHHHHH
Q 037475           26 IYIFKVLNQIYLDIGISSKAMGIMNT-------------SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        26 ~YI~kVLKqVhpd~gISskam~imns-------------~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..|.|.||+-+-...|++.|---|-.             ++-++-+++.-||+|+||-|||
T Consensus        16 ~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir   76 (106)
T d1tzya_          16 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   76 (106)
T ss_dssp             HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence            35889999865555677665432222             6677899999999999999997

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=83.08  E-value=0.12  Score=31.70  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=19.9

Q ss_pred             ccccccCCCCCCChHHHHHHHH
Q 037475           52 SRLARYKKKPTITSREIQTIVR   73 (98)
Q Consensus        52 ~~La~~~kr~TltsreIqtAvr   73 (98)
                      ..++.+.+|.|||..||..|++
T Consensus        51 ~~~~~hakRKTvt~~DV~~Alk   72 (82)
T d2huec1          51 VTYTEHAKRKTVTAMDVVYALK   72 (82)
T ss_dssp             HHHHHHTTCSEECHHHHHHHTT
T ss_pred             HHHHHHhCCCcCCHHHHHHHHH
Confidence            6788899999999999999876

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=81.16  E-value=0.55  Score=29.90  Aligned_cols=53  Identities=21%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             HHHHhhhhcCC-CCchHHHHH------------hhhh-ccccccCCCCCCChHHHHHHHHHhchhHHHH
Q 037475           28 IFKVLNQIYLD-IGISSKAMG------------IMNT-SRLARYKKKPTITSREIQTIVRLVLLGELAK   82 (98)
Q Consensus        28 I~kVLKqVhpd-~gISskam~------------imns-~~La~~~kr~TltsreIqtAvrLlLPgeLaK   82 (98)
                      |.|.|+..+.- .-|++.|-=            |+.- .+-++-+++..||+|+||-|++  =-.||.+
T Consensus        17 v~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~--nD~EL~~   83 (103)
T d1f66c_          17 IHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR--GDEELDS   83 (103)
T ss_dssp             HHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH--HSHHHHH
T ss_pred             HHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc--CcHHHHH
Confidence            56677765432 235544432            2222 5567889999999999999988  2334443