Citrus Sinensis ID: 037504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
MAHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLTLPNFA
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccHHHHcccccHHHHHHHcccHHHHHHHHHHcccHHHccccccccHHHHHHHHcccHHHHHHHHHHcHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHccccccHHHHHHccHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccHHHHHHHcccHHHHHHHHHHccccccccEEEccccccHHHHHHHcccHHHHHHHHHHccccccEcccccccccHHHHHHHcccHHHHHHHHHccccHccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccccHHHcHHHcccccHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHcHHHHHHHHHcccccccEEEEccccccccHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mahsaplelhvysnppveeIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATmegneditmvpqddkdrmlpivgaaslghTEVVEFLYRETknslkdddCIELLVKLIETDSYETALHVLARKnltssnqnprGIFQRYFNLGAKAVENERALELVELLWENflfkypdliwkfdenghTIFHIAVSNRMREIFKFIFEISSVADLlfdskdkdgnnilhlagklpplnrlnIVSVAALQLQRELLWFQEVKKVVprkfaeeknndgltpgdlFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAaitvpggykegiGRLCLTLPNFA
Flexible Loop (DISEMBL)
mahsaplelhvysnppveeiRTRRLKLYRVALNgdwarakviydehKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAenldlakrnRIGCTALFYAAASGSVELVKATMEGNEDItmvpqddkdrMLPIVGAASLGHTEVVEFLYREtknslkddDCIELLVKLIETDSYETALHVLARknltssnqnprGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHlagklpplnrLNIVSVAALQLQRELLWFQEVKKVvprkfaeeknndgltpgdlFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLTLPNFA
Low Complexity Region (SEG)
MAHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLTLPNFA
Disordered region (IsUnstruct)
**********VY***PVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG**DITM******DRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFA*******LTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLTL****
Disordered Region (DISOPRED)
MAHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAE******************************NASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLT*P***
Disordered Region (DISEMBL)
MAHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLTLPNFA
Disordered Region (DISPRO)
******LEL*VYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYK*****LC*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHxxxxxxxxxxxxxxxxxxxxxNLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIGRLCLTLPNFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.777	0.522	0.269	2e-13
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.742	0.561	0.257	6e-10
Q99NH0	2603	Ankyrin repeat domain-con	yes	no	0.345	0.052	0.255	2e-06
Q5U312	978	Ankycorbin OS=Rattus norv	yes	no	0.214	0.086	0.372	3e-06
O75179	2603	Ankyrin repeat domain-con	no	no	0.345	0.052	0.248	5e-06
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.608	0.055	0.259	6e-06
Q5ZLC8	1073	Serine/threonine-protein	no	no	0.507	0.187	0.295	9e-06
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.608	0.122	0.255	9e-06
Q6F6B3	1849	Protein TANC1 OS=Rattus n	no	no	0.257	0.055	0.311	2e-05
Q0VGY8	1856	Protein TANC1 OS=Mus musc	no	no	0.257	0.054	0.293	2e-05

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 155/356 (43%), Gaps = 48/356 (13%)

Query: 45  EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA 104
           E +  I + +  LG+TAL  AA    +D VK+L+K    E+  +AK+NR G   L  AA 
Sbjct: 116 EIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRES--IAKKNRSGYDPLHIAAI 173

Query: 105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCI 164
            G   +V+  ++   D T+          P+V AA  GHTEVV  L  +  N L+     
Sbjct: 174 QGHHAIVEVLLD--HDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLE----- 226

Query: 165 ELLVKLIETDSYETALHVLARKN--------LTSSNQNPRGIFQRYFNLGAKAVENERAL 216
                 I   + + ALH+ AR+         L+   Q  R I ++       AV+ + + 
Sbjct: 227 ------ISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSS- 279

Query: 217 ELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK 276
           E+V+LL    L   P ++ + D++ +T  H+A   +  EI + +    S+ D   ++  +
Sbjct: 280 EVVKLL----LDADPAIVMQPDKSCNTALHVATRKKRAEIVELLL---SLPDTNANTLTR 332

Query: 277 DGNNILHLAGKLP----------PLNRLNIVSVAALQLQRELL--WFQEVKKVVPRKFAE 324
           D    L +A  LP           L R   +    L   R+ L     ++K  V  +  +
Sbjct: 333 DHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQ 392

Query: 325 EKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGG 380
            K  +         KE  +L ++G   + +  +S  +VA L  TV F A  TVPGG
Sbjct: 393 TKRTNKNVHN--ISKELRKLHREG---INNATNSVTVVAVLFATVAFAAIFTVPGG 443

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 148/354 (41%), Gaps = 60/354 (16%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G+TAL+VAA     D VK L+K   ++++    + + G  A   AA +G+++++   +E 
Sbjct: 56  GETALYVAAEYGYTDMVKILMKH--SDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEA 113

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
           N +++      K   L    AAS GH E+V FL          D  ++L    I   + +
Sbjct: 114 NPELSFTFDSSKTTALHT--AASQGHGEIVCFLL---------DKGVDLAA--IARSNGK 160

Query: 178 TALHVLARKNLT----SSNQNPRGIFQRYFNLGAKAVE---NERALELVELLWENFLFKY 230
           TALH  AR   T       +   G+  R    G  A+      +  E+V++L E      
Sbjct: 161 TALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME----AD 216

Query: 231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPP 290
             LI   D  G+T  HIAV     EI + + +   V+ +  +   K G   L +A K   
Sbjct: 217 GSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVN---KSGETALDIAEKTGL 273

Query: 291 LNRLNIVSVAALQLQRELLWFQEVKKVVP----RKFAEEKNNDGLTPGDLFIKEHEELKK 346
              + ++    +Q  R +   +  +KV P    RK  E       T  ++  + H +L++
Sbjct: 274 HEIVPLLQKIGMQNARSI---KPAEKVEPSGSSRKLKE-------TVSEIGHEVHTQLEQ 323

Query: 347 KGET-----------------WVKDNASSCMIVATLITTVVFGAAITVPGGYKE 383
            G T                  + +  +S  +VA LI TV F A   VPG Y +
Sbjct: 324 TGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTD 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 31   ALNGDWAR-AKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA 89
            A +G +A   +V+ D+  D     +    DTAL +AA      F + L+   K  ++D+ 
Sbjct: 1288 AASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIG--KGAHIDV- 1344

Query: 90   KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF 149
             RN+ G T L+ AA  G +++V+  ++   D+      D  ++ P++ A   GH +VV +
Sbjct: 1345 -RNKKGNTPLWLAANGGHLDVVQLLVQATADVDAA---DNRKITPLMAAFRKGHVKVVRY 1400

Query: 150  LYRETKNSLKDDDCIELLVKLIETD 174
            L +E      D +C+  +  + + +
Sbjct: 1401 LVKEVNQFPSDSECMRYIATITDKE 1425

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 58  GDTALHVAAAANRIDFVKKLVK-KMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
           G +ALH+AA     +++KKL++ K  AE++D      +G TAL YAAA GS++ V+   E
Sbjct: 86  GHSALHIAAKNGHPEYIKKLLQYKSPAESVD-----NLGKTALHYAAAQGSLQAVQVLCE 140

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
               I +    D D  +P++ A   GH+E   FL
Sbjct: 141 HKSPINL---KDLDGNIPLLVAIQNGHSEACHFL 171

Rattus norvegicus (taxid: 10116)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 31   ALNGDWAR-AKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA 89
            A +G +A   +V+ D+  D     +    DTAL +AA      F + L+   +  ++D+ 
Sbjct: 1292 AASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIG--RGAHIDV- 1348

Query: 90   KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF 149
             RN+ G T L+ AA  G +++V+  ++   D+      D  ++ P++ A   GH +VV +
Sbjct: 1349 -RNKKGNTPLWLAANGGHLDVVQLLVQAGADVDAA---DNRKITPLMAAFRKGHVKVVRY 1404

Query: 150  LYRETKNSLKDDDCIELLVKLIETD 174
            L +E      D +C+  +  + + +
Sbjct: 1405 LVKEVNQFPSDSECMRYIATITDKE 1429

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 125/297 (42%), Gaps = 56/297 (18%)

Query: 24  RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA 83
           RL    +A   D  +A  +  ++ D   DV ++ G T LH+AA    I+    L+ +  A
Sbjct: 202 RLPALHIAARKDDTKAAALLLQN-DNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAA 260

Query: 84  ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
             +D   RN I  T L  A+  G+  +VK  ++    I       +D + P+   A  GH
Sbjct: 261 --VDFTARNDI--TPLHVASKRGNANMVKLLLDRGAKIDA---KTRDGLTPLHCGARSGH 313

Query: 144 TEVVEFL-------YRETKNSL-------KDD--DCIELLVK---LIE--TDSYETALHV 182
            +VVE L         +TKN L       + D  +C++LL++    ++  T+ Y TALHV
Sbjct: 314 EQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHV 373

Query: 183 LAR-------KNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
            A        K L     NP       F     A +  R ++++EL     L K+   I 
Sbjct: 374 AAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNR-IKVMEL-----LLKHGASIQ 427

Query: 236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNI-----LHLAGK 287
              E+G T  H+A          F+  ++ V+ L+      +  N+     LH+A +
Sbjct: 428 AVTESGLTPIHVAA---------FMGHVNIVSQLMHHGASPNTTNVRGETALHMAAR 475

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 100/230 (43%), Gaps = 29/230 (12%)

Query: 60  TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
           T LHVAAA      V+ ++  +   N+     +R G TAL +A  SG +E+V   +  N+
Sbjct: 109 TPLHVAAANRATKCVEAIIPLLSTVNV----ADRTGRTALHHAVHSGHLEMVNLLL--NK 162

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLY-RETKNSLKDDDCIELLVKLIETDSYET 178
             ++   D KDR  PI  AA LGH EV++ L  R      KD     LL     +   E 
Sbjct: 163 GASLSTCDKKDRQ-PIHWAAFLGHLEVLKLLVARGADVMCKDKKGYTLLHTAAASGQIEV 221

Query: 179 ALHVLARKNLTSSNQNPRGIFQRYFN--LGAKAVENERALELVELLWENFLFKYPDLIWK 236
             H+L R  +     N  G    +    +G  AV NE             L  Y   + +
Sbjct: 222 VRHLL-RLGVEIDEPNSFGNTALHIACYMGQDAVANE-------------LVNYGANVNQ 267

Query: 237 FDENGHTIFHI-AVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
            +E G T  H  AVS       + +  +++ AD+ F S  K+G + LH+A
Sbjct: 268 PNEKGFTPLHFAAVSTNGALCLELL--VNNGADVNFQS--KEGKSPLHMA 313

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 56/297 (18%)

Query: 24  RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA 83
           RL    +A   D  +A  +  ++ D   DV ++ G T LH+AA    I+    L+ +  A
Sbjct: 185 RLPALHIAARKDDTKAAALLLQN-DTNADVESKSGFTPLHIAAHYGNINVATLLLNRAAA 243

Query: 84  ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
             +D   RN I  T L  A+  G+  +VK  ++    I       +D + P+   A  GH
Sbjct: 244 --VDFTARNDI--TPLHVASKRGNANMVKLLLDRGAKIDA---KTRDGLTPLHCGARSGH 296

Query: 144 TEVVEFL-------YRETKNSL-------KDD--DCIELLVKL-----IETDSYETALHV 182
            +VVE L         +TKN L       + D  +C++LL++        T+ Y TALHV
Sbjct: 297 EQVVEMLLDRSAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHV 356

Query: 183 LAR-------KNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
            A        K L     +P       F     A +  R + ++EL     L K+   I 
Sbjct: 357 AAHCGHYKVAKVLLDKKASPNAKALNGFTPLHIACKKNR-IRVMEL-----LLKHGASIQ 410

Query: 236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNI-----LHLAGK 287
              E+G T  H+A          F+  ++ V+ L+      +  N+     LH+A +
Sbjct: 411 AVTESGLTPIHVAA---------FMGHVNIVSQLMHHGASPNTTNVRGETALHMAAR 458

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 7/109 (6%)

Query: 42   IYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY 101
            + +EH+ E+    T  G+TAL  AA   +++  + L+++  A    +++ NR G   LF 
Sbjct: 1053 MAEEHEIEVNGTDTLWGETALTAAAGRGKLEICELLLERGAA----VSRANRRGVPPLFC 1108

Query: 102  AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
            AA  G  ++V+  ++   D+   P D + R  P++ AA  GH   VEFL
Sbjct: 1109 AARQGHWQVVQLLLDRGCDVN--PNDKQGRT-PLMVAACEGHLSTVEFL 1154

May be a scaffold component in the postsynaptic density.

Rattus norvegicus (taxid: 10116)

>sp|Q0VGY8|TANC1_MOUSE Protein TANC1 OS=Mus musculus GN=Tanc1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 42   IYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY 101
            + +EH+ E+    T  G+TAL  AA   +++  + L+++  A    +++ NR G   LF 
Sbjct: 1060 MAEEHEIEVNGTDTLWGETALTAAAGRGKVEICELLLERGAA----VSRANRRGVPPLFC 1115

Query: 102  AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
            AA  G  ++V+  ++   D+ +    DK    P++ A+  GH   VEFL
Sbjct: 1116 AARQGHWQVVRLLLDRGCDVNL---SDKQGRTPLMVASCEGHLSTVEFL 1161

May be a scaffold component in the postsynaptic density.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
224120488	610	predicted protein [Populus trichocarpa]	0.898	0.583	0.419	4e-78
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.962	0.482	0.397	1e-74
297737987	1855	unnamed protein product [Vitis vinifera]	0.954	0.203	0.395	2e-72
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.982	0.229	0.373	2e-71
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.904	0.594	0.407	5e-71
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.891	0.626	0.422	7e-71
297738255	532	unnamed protein product [Vitis vinifera]	0.896	0.667	0.407	2e-70
147810947	561	hypothetical protein VITISV_017115 [Viti	0.904	0.638	0.419	4e-69
356532648	739	PREDICTED: uncharacterized protein LOC10	0.901	0.483	0.375	7e-69
224136692	743	predicted protein [Populus trichocarpa]	0.883	0.471	0.386	4e-68

>gi|224120488|ref|XP_002331060.1| predicted protein [Populus trichocarpa] gi|222872990|gb|EEF10121.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 178/424 (41%), Positives = 239/424 (56%), Gaps = 68/424 (16%)

Query: 21  RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK 80
           R R L+LY+ AL+GDW  A+ IY     E+   IT+ G+TALH+AAAA    FVK+LV  
Sbjct: 46  RKRHLQLYQAALSGDWDTAEGIYKLCPGEVNARITKRGETALHIAAAAEHTHFVKQLVGM 105

Query: 81  MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAAS 140
           M  E L  A R+  G TA  +AA SG   L K  M+   D+ M     +  +LPI  A  
Sbjct: 106 MSIEAL--AYRSSAGNTAFCFAAISGVEALAKVMMDKKPDLAMT--RGRGNLLPIYMATL 161

Query: 141 LGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE---------------------TA 179
           LGH  +V +LY ETK  L D D I+LLV LI +D Y+                     TA
Sbjct: 162 LGHRGMVSYLYDETKEQLTDGDRIKLLVALINSDIYDVAWKMLKEHRGLAYARDEHQLTA 221

Query: 180 LHVLARKNLTSSN---QNPRGIFQRYFNLGAKAVE-----NERALELVELLWENFLFK-- 229
           LH  ++K+   SN   Q+P G + +  N   K  +     +++AL+L++ LWE  +    
Sbjct: 222 LHAFSQKSCMPSNVVDQSPPGFWNKCLNPCFKLAQMKKLMHKQALDLIQYLWEQVVLLDD 281

Query: 230 --------------------------------YPDLIWKFDENGHTIFHIAVSNRMREIF 257
                                           YP+LI+K D+N ++IFHIA+ NR  +I 
Sbjct: 282 STISSQIGKPWPLIFTAAERGNLDLLTILIRLYPELIFKVDQNTYSIFHIAILNRHEDIL 341

Query: 258 KFIFEISSVADLLFDSKDKDGNNILHLAGK-LPPLNRLNIVSVAALQLQRELLWFQEVKK 316
           K I++I S+ +++   KD++GNN+LHLA K L   +RLN +  AALQLQRELLWF+EVKK
Sbjct: 342 KMIYQIGSIKNVMTIYKDREGNNMLHLAAKVLESPSRLNAIPGAALQLQRELLWFEEVKK 401

Query: 317 VVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAIT 376
           VV  +  EEKN  G TPG LFI++H +L K+GE W++D A SCM+VATLI TVVF AA T
Sbjct: 402 VVQPRHIEEKNFHGKTPGALFIEQHRDLMKEGEQWMRDTADSCMLVATLIATVVFAAAFT 461

Query: 377 VPGG 380
           VPGG
Sbjct: 462 VPGG 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/453 (39%), Positives = 248/453 (54%), Gaps = 72/453 (15%)

Query: 3   HSAPLELHVYSNPPVEEIRTRRLKLYRV----ALNGDWARAKVIYDEHKDEIGDVITRLG 58
           HS PL    YS     EIR+  LK Y +    ALNGDW  AK   + +   +   ITR  
Sbjct: 150 HSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRS 209

Query: 59  DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN 118
           +TALH+AA A    FV++LVK MK +  DLA +N++G TAL +AAASG   + +  +  N
Sbjct: 210 ETALHIAAGARHTRFVEELVKLMKPD--DLALQNKVGNTALCFAAASGITRIAEVMVNKN 267

Query: 119 EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYE 177
            ++ M+       + P+  AA +GH ++V +LY  T+ ++L  +D I LLV  I  + ++
Sbjct: 268 RELPMI--RGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFD 325

Query: 178 ---------------------TALHVLARKNLTSSNQNPRGIFQR--YFNLGAKAVENER 214
                                TALHVLARK L   + +  GI+ R  Y   G K+V +++
Sbjct: 326 VALHMLHEDPELAMARDGNGDTALHVLARKPLAFYSGSQLGIWHRCIYSFPGFKSVYDKK 385

Query: 215 -----ALELVELLWENFLF-----------------------------------KYPDLI 234
                ALELV+ LW+  L                                     YPDLI
Sbjct: 386 LMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLI 445

Query: 235 WKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRL 294
           WK ++   TIFH+AV++R  +IF  I+EI +  D +   KD+  NN+LHLAGKL P NRL
Sbjct: 446 WKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRL 505

Query: 295 NIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKD 354
            I S AA QLQREL WF+EV+K++   + E KN  G TP  LF +EH++L ++GE W+KD
Sbjct: 506 KIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKD 565

Query: 355 NASSCMIVATLITTVVFGAAITVPGGYKEGIGR 387
            ASSCM+VATLI TV+F AA +VPGG  +  GR
Sbjct: 566 TASSCMVVATLIATVMFAAAFSVPGGNDDDTGR 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 170/430 (39%), Positives = 241/430 (56%), Gaps = 52/430 (12%)

Query: 3   HSAPLELHVYSNPPVEEIRTRRLKLYRV----ALNGDWARAKVIYDEHKDEIGDVITRLG 58
           HS PL    YS     EIR+  LK Y +    ALNGDW  AK   + +   +   ITR  
Sbjct: 150 HSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRS 209

Query: 59  DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN 118
           +TALH+AA A    FV++LVK MK +  DLA +N++G TAL +AAASG   + +  +  N
Sbjct: 210 ETALHIAAGARHTRFVEELVKLMKPD--DLALQNKVGNTALCFAAASGITRIAEVMVNKN 267

Query: 119 EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYE 177
            ++ M+       + P+  AA +GH ++V +LY  T+ ++L  +D I LLV  I  + ++
Sbjct: 268 RELPMI--RGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFD 325

Query: 178 TALHVLARKNLTSSNQNPRGI-----FQRYFNLGAKAVENERALELVELLWENFLF---- 228
            ALH+L      +  ++   I     F+  ++   K + + +ALELV+ LW+  L     
Sbjct: 326 VALHMLHEDPELAMARDGASIHVIPGFKSVYD---KKLMHIQALELVQQLWDKILSLDHD 382

Query: 229 -------------------------------KYPDLIWKFDENGHTIFHIAVSNRMREIF 257
                                           YPDLIWK ++   TIFH+AV++R  +IF
Sbjct: 383 PKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIF 442

Query: 258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKV 317
             I+EI +  D +   KD+  NN+LHLAGKL P NRL I S AA QLQREL WF+EV+K+
Sbjct: 443 NLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKI 502

Query: 318 VPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITV 377
           +   + E KN  G TP  LF +EH++L ++GE W+KD ASSCM+VATLI TV+F AA +V
Sbjct: 503 IQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSV 562

Query: 378 PGGYKEGIGR 387
           PGG  +  GR
Sbjct: 563 PGGNDDDTGR 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 187/501 (37%), Positives = 255/501 (50%), Gaps = 112/501 (22%)

Query: 3   HSAPLELHVYSNPPVEEIRTRRLKLYRV----ALNGDWARAKVIYDEHKDEIGDVITRLG 58
           HS PL    YS     EIR+  LK Y +    ALNGDW  AK   + +   +   ITR  
Sbjct: 150 HSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRS 209

Query: 59  DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN 118
           +TALH+AA A    FV++LVK MK +  DLA +N++G TAL +AAASG   + +  +  N
Sbjct: 210 ETALHIAAGARHTRFVEELVKLMKPD--DLALQNKVGNTALCFAAASGITRIAEVMVNKN 267

Query: 119 EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYE 177
            ++ M+       + P+  AA +GH ++V +LY  T+ ++L  +D I LLV  I  + ++
Sbjct: 268 RELPMI--RGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFD 325

Query: 178 ---------------------TALHVLARKNLT--SSNQNPRGIF--------------- 199
                                TALHVLARK L   S     RG+F               
Sbjct: 326 VALHMLHEDPELAMARDGNGDTALHVLARKPLAFYSGRARQRGVFLLYSATKGEVRLCLN 385

Query: 200 ------------------QRYFNL------GAKAVENER-----ALELVELLWENFLF-- 228
                             Q YF L      G K+V +++     ALELV+ LW+  L   
Sbjct: 386 VIRSLCSASTHVFYXFNSQTYFGLLPHAVPGFKSVYDKKLMHIQALELVQQLWDKILSLD 445

Query: 229 ---------------------------------KYPDLIWKFDENGHTIFHIAVSNRMRE 255
                                             YPDLIWK ++   TIFH+AV++R  +
Sbjct: 446 HDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEK 505

Query: 256 IFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVK 315
           IF  I+EI +  D +   KD+  NN+LHLAGKL P NRL I S AA QLQREL WF+EV+
Sbjct: 506 IFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVE 565

Query: 316 KVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAI 375
           K++   + E KN  G TP  LF +EH++L ++GE W+KD ASSCM+VATLI TV+F AA 
Sbjct: 566 KIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAF 625

Query: 376 TVPGGYKEGIGR-LCLTLPNF 395
           +VPGG  +  GR + LT  +F
Sbjct: 626 SVPGGNDDDTGRPIFLTKKSF 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 173/425 (40%), Positives = 243/425 (57%), Gaps = 67/425 (15%)

Query: 25  LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE 84
           + LYR A+ GDW  AK I++     +   IT  GDT LH+AAAA  + FV+++VK M+ E
Sbjct: 51  IPLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPE 110

Query: 85  NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT 144
           +L+L  +N+   TA ++AAA+G V + KA ++ NE + M+     D M P+  AA LGH+
Sbjct: 111 DLEL--KNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMI--RAYDEMTPLHVAALLGHS 166

Query: 145 EVVEFLYRETKN-SLKDDDCIELLVKLIETDSY---------------------ETALHV 182
           E+V +LY +T +  L   D ++LL   I TD Y                     ETALH+
Sbjct: 167 EMVWYLYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHL 226

Query: 183 LARKNLTSSNQNPRGIFQRYFN-LGAKAVENE------RALELVELLWENFLFK------ 229
           LARK    S  +   I+    N +  K VE++      ++L+LV+ LW+  + +      
Sbjct: 227 LARKPSAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEIL 286

Query: 230 ----------------------------YPDLIWKFDENGHTIFHIAVSNRMREIFKFIF 261
                                       YPDLIW+ D++  +IFHIAV +R   IF  I+
Sbjct: 287 DLIRSPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIY 346

Query: 262 EISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRK 321
           EI S+ DL+  +KD++ NNILHLAG+L P  + NIV  AALQ+QRELLWF+EV+K+V   
Sbjct: 347 EIGSMKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPS 406

Query: 322 FAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGY 381
           F E KN DG TP DLF KEH++L K+GE W++  A+  M+VATLI TVVF AA+TVPGG 
Sbjct: 407 FRERKNRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGS 466

Query: 382 KEGIG 386
            +  G
Sbjct: 467 NQDTG 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 163/386 (42%), Positives = 225/386 (58%), Gaps = 33/386 (8%)

Query: 25  LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE 84
           + LY  A+ GDW  A+ I+      +   IT+  DT LH+AAAA  + FV+++VK M+ +
Sbjct: 57  IPLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVEEMVKMMEPK 116

Query: 85  NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT 144
           +L+L  +N+   TAL +AAASG V + +  ++ NE++ M+       M+P+  AA LGH+
Sbjct: 117 DLEL--QNKYSNTALCFAAASGIVRIAEVMVKKNENLPMI--QGGGGMIPLHMAALLGHS 172

Query: 145 EVVEFLYRETKNS-LKDDDCIELLVKLIETDSY---------------------ETALHV 182
           E+V +LY +T +  L   D + LL   I TD Y                     ETALH+
Sbjct: 173 EMVRYLYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDENDETALHL 232

Query: 183 LARKNLTSSNQNPRGIFQRYFN--LGAKAVENERALELVELLWENFLFKYPDLIWKFDEN 240
           LARK    S  +   ++  +    L   A E    + L EL+       YPDLIW+ D +
Sbjct: 233 LARKPSAFSGGDQLHMWNTFITSPLLLVAAELGNTVFLTELVGS-----YPDLIWEADND 287

Query: 241 GHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVA 300
             TIFHIAV +R   IF  I+EI S+ DL+   KD + NN+LHLAG+  PL + NIVS A
Sbjct: 288 NRTIFHIAVLHRRESIFNLIYEIGSMKDLIVPYKDDNDNNMLHLAGRKAPLPQRNIVSGA 347

Query: 301 ALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCM 360
           ALQ+QRELLWF+EV+K++   + E KN DG TP DLF KEH+ L K GE W++  A+  M
Sbjct: 348 ALQMQRELLWFKEVEKIMLPTYRERKNKDGKTPRDLFTKEHKNLMKDGEKWMRGTAAQSM 407

Query: 361 IVATLITTVVFGAAITVPGGYKEGIG 386
           +VATLI TVVF AA TVPGG  +  G
Sbjct: 408 LVATLIATVVFAAAFTVPGGSNQDTG 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738255|emb|CBI27456.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/422 (40%), Positives = 242/422 (57%), Gaps = 67/422 (15%)

Query: 25  LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE 84
           + LYR A+ GDW  AK I++     +   IT  GDT LH+AAAA  + FV+++VK M+ E
Sbjct: 51  IPLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPE 110

Query: 85  NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT 144
           +L+L  +N+   TA ++AAA+G V + KA ++ NE + M+     D M P+  AA LGH+
Sbjct: 111 DLEL--KNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRA--YDEMTPLHVAALLGHS 166

Query: 145 EVVEFLYRETKN-SLKDDDCIELLVKLIETDSY---------------------ETALHV 182
           E+V +LY +T +  L   D ++LL   I TD Y                     ETALH+
Sbjct: 167 EMVWYLYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHL 226

Query: 183 LARKNLTSSNQNPRGIFQRYFN-LGAKAVENE------RALELVELLWENFLFK------ 229
           LARK    S  +   I+    N +  K VE++      ++L+LV+ LW+  + +      
Sbjct: 227 LARKPSAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEIL 286

Query: 230 ----------------------------YPDLIWKFDENGHTIFHIAVSNRMREIFKFIF 261
                                       YPDLIW+ D++  +IFHIAV +R   IF  I+
Sbjct: 287 DLIRSPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIY 346

Query: 262 EISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRK 321
           EI S+ DL+  +KD++ NNILHLAG+L P  + NIV  AALQ+QRELLWF+EV+K+V   
Sbjct: 347 EIGSMKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPS 406

Query: 322 FAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGY 381
           F E KN DG TP DLF KEH++L K+GE W++  A+  M+VATLI TVVF AA+TVPGG 
Sbjct: 407 FRERKNRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGS 466

Query: 382 KE 383
            +
Sbjct: 467 NQ 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810947|emb|CAN70012.1| hypothetical protein VITISV_017115 [Vitis vinifera]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 171/408 (41%), Positives = 238/408 (58%), Gaps = 50/408 (12%)

Query: 25  LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE 84
           + LYR A+ GDW  AK I++     +   IT  GDT LH+AAAA  + FV+++VK M+ E
Sbjct: 51  IPLYRAAMKGDWKTAKGIFEMFPAAVRLTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPE 110

Query: 85  NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT 144
           +L+L  +N+   TA ++AAA+G V + KA  + NE + M+     D M P+  AA LGH+
Sbjct: 111 DLEL--KNQYSNTAFWFAAAAGIVGIAKAMXKKNEILPMIRA--YDEMTPLHVAALLGHS 166

Query: 145 EVVEFLYRETKN-SLKDDDCIELLVKLIETDSY---------------------ETALHV 182
           E+V +LY +T +  L   D ++LL   I TD Y                     ETALH+
Sbjct: 167 EMVWYLYNKTDHEXLTVSDWVKLLNACISTDLYDVALDISSHHPTLAVERDGNGETALHL 226

Query: 183 LARKNLTSSNQNPRGIF------QRYFNLGAKAVENERALELVELLWE------------ 224
           LARK    S  +   I+       + F+L    V  +   E+++L+              
Sbjct: 227 LARKPSAFSGGDQLHIWNTVINSSKLFSLSFVEVIVQPHSEILDLIRSPSPLLLVAAELG 286

Query: 225 NFLFK------YPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDG 278
           N +F       YPDLIW+ D++  +IFHIAV +R   IF  I+EI S+ DL+  +KD++ 
Sbjct: 287 NTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEIGSMKDLIVPNKDEND 346

Query: 279 NNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFI 338
           NNILHLAG+L P  + NIV  AALQ+QRELLWF+EV+K+V   F E KN DG TP DLF 
Sbjct: 347 NNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRERKNRDGETPWDLFT 406

Query: 339 KEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIG 386
           KEH++L K+GE W++  A+  M+VATLI TVVF AA+TVPGG  +  G
Sbjct: 407 KEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTG 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 164/437 (37%), Positives = 243/437 (55%), Gaps = 80/437 (18%)

Query: 6   PLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVA 65
           P+ LH+Y            L LYR +L GDW +A    + H      +I+R  +TALH++
Sbjct: 188 PMNLHMY------------LPLYRASLKGDWEKANEFLNLHPGAENAMISRGWETALHIS 235

Query: 66  AAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVP 125
           A A R  FV++LVK+M+  +L++  +N+   TAL +AAASG  ++ K  ++ N ++ ++ 
Sbjct: 236 AGARRTKFVEELVKRMRTTDLEI--QNKDNNTALCFAAASGVTKIAKLMVDRNRNLPVI- 292

Query: 126 QDDKDRMLPIVGAASLGHTEVVEFLYRETKNS-LKDDDCIELLVKLIETDSY-------- 176
               + + P+  A  LG  ++V +LY  T +  LK +D   LL+  I TD Y        
Sbjct: 293 -RGSEGVTPLYIATLLGQRDMVWYLYSVTNHEILKTEDYFSLLIAAISTDLYDFALHVLE 351

Query: 177 -------------ETALHVLARKNLTSSNQNPRGIFQR--YFNLGAKAVE-----NERAL 216
                        ETALHVLA+K  + ++    GI++R  Y   G +AV+     N +AL
Sbjct: 352 CQPQLATYHGLNGETALHVLAKKPSSFTSGIQLGIWERCIYPLPGFEAVQKKKTLNAQAL 411

Query: 217 ELVELLWE-----------------------------------NFLFKYPDLIWKFDENG 241
           +LV+ LWE                                     L+ YPDL+WK D   
Sbjct: 412 KLVQRLWELIVSSDEIQHGDLIKSPLSRPLFIAAESGIPEIVIELLYSYPDLLWKVDGQN 471

Query: 242 HTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAA 301
            ++FHIA+ +R  +IF  I++I +  DL+   +D + +NILHLAGKL P  +L++VS AA
Sbjct: 472 RSLFHIAIMHRQEKIFNLIYDIGAHKDLITSYRDNNNHNILHLAGKLAPSEQLHVVSGAA 531

Query: 302 LQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMI 361
           LQ+QRELLWF+EV+K++   F E K++ G TP  LF +EH+EL K+GE W+K+ ASSCM+
Sbjct: 532 LQMQRELLWFKEVEKIIQPLFKEIKDSQGRTPQMLFTEEHKELAKEGEKWLKNTASSCML 591

Query: 362 VATLITTVVFGAAITVP 378
           VATLITTV+F A  TVP
Sbjct: 592 VATLITTVMFAAIFTVP 608

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 227/417 (54%), Gaps = 67/417 (16%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL 86
           LY+ A+ GDW +A   +  H   I   IT+  DT LH+AA A    FV+++VK M   +L
Sbjct: 195 LYQAAMKGDWEKADEFFKSHPGAINVRITKEMDTVLHIAAGAKHTKFVEEVVKSMTGTDL 254

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
            L  RN+   TAL YAAASG  ++ +  +  N ++ M+   +   + P+  AA  GH ++
Sbjct: 255 TL--RNKYNNTALCYAAASGVTKIAEMMVSKNRNLPMM--RNNRGVTPLYIAALFGHKDM 310

Query: 147 VEFLYRETKNS-LKDDDCIELLVKLIETDSY---------------------ETALHVLA 184
           V +LY  T +  L  DD I LL+  I TD +                     ETALHVLA
Sbjct: 311 VWYLYSVTSDEYLTRDDYIGLLIATISTDLFDVALSIIQHQPELAIQRDLNGETALHVLA 370

Query: 185 RKNLTSSNQNPRGIFQRYFNL--GAKAVENER-----ALELVELLWENFLF--------- 228
           RK+   ++++  G + R+     G KAV +++      LELV+L WE  L          
Sbjct: 371 RKSSAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWEQVLLLDDCQIAEL 430

Query: 229 -------------------------KYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI 263
                                     YPDLIWK +E   +IFHIAV++R  +IF  I +I
Sbjct: 431 LASPSQPLFVAAEFGIVEFITALIRSYPDLIWKVNEQSRSIFHIAVAHRQEKIFSLINDI 490

Query: 264 SSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFA 323
            +  D++   KD +  NILHLAG + P ++LN++S AALQ+QRELLWF+EV+K V     
Sbjct: 491 GAHKDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQRELLWFKEVEKNVQPSLK 550

Query: 324 EEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGG 380
           E ++ +G TP  LF +EH  L K+GE W+K+ ASSCM++ATLITTV+F A  TVPGG
Sbjct: 551 EMRDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVMFAAIFTVPGG 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.813	0.560	0.345	8.4e-42
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.406	0.463	0.493	2e-40
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.398	0.236	0.420	2.9e-37
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.409	0.259	0.414	4.4e-37
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.373	0.245	0.422	8.3e-31
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.439	0.617	0.381	1.8e-23
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.805	0.540	0.271	1.2e-13
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.767	0.500	0.260	5.6e-12
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.767	0.580	0.258	2.2e-10
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.848	0.507	0.233	2e-09

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 118/342 (34%), Positives = 186/342 (54%)

Query:    58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             G+T L  AAA   I+  + L+  ++ +  D++    +  T +  AA  G  E+V+     
Sbjct:   120 GNTPLSFAAALGDIETAEMLINMIR-DLPDISNEKTM--TPIHIAALYGHGEMVQYLFSK 176

Query:   118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN-SLKDDDCIELLVK-LIETDS 175
                 T + +D  D+        +L HT +   +Y    +  L   + ++L  K L    +
Sbjct:   177 ----TSI-KDLNDQQY-----LNLFHTMISADIYGVFADVPLWMLERVDLYRKELALYPN 226

Query:   176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
                ALH+LARK    S+++   +FQ+  +  +  + +   L  VE+L    +  + DL+W
Sbjct:   227 SNKALHLLARKTSAISHKSQLNLFQQVAS--SWLLFDAAELGNVEIL-VILIRSHLDLLW 283

Query:   236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNN-ILHLAGKLPPLNRL 294
               D N  T+FH+A   R   IF  I+E+  + DL+   K+K   + +LHL  +LPP+NR 
Sbjct:   284 IVDNNNRTLFHVAALYRHENIFSLIYELGGIKDLIASYKEKQSKDTLLHLVARLPPMNRQ 343

Query:   295 NIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKD 354
              + S AAL +Q+ELLWF+ VK++VPR + E KN  G    D+F ++HE L+K+GE W+K+
Sbjct:   344 QVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGELAHDIFTEQHENLRKEGERWMKE 403

Query:   355 NASSCMIVATLITTVVFGAAITVPGGYKE-GIGRLCLTLPNF 395
              A++CM+ ATLI TVVF AAIT+PGG  + G     L  PNF
Sbjct:   404 TATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNF 445

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 82/166 (49%), Positives = 117/166 (70%)

Query:   216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKD 275
             LEL+ +L    +  YPDLIW  D    ++FHIA  NR  +IF  I+E+ ++ DL+   K+
Sbjct:    44 LELLLIL----IRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKE 99

Query:   276 KDGN-NILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPG 334
             K+ N N+LHL  +LPP NRL +VS AALQ+QRE+LW++ VK++VPR + + KN       
Sbjct:   100 KESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAH 159

Query:   335 DLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGG 380
             DLF KEH+ L+K+GE W+K+ A++C++V+TLI TVVF AA T+PGG
Sbjct:   160 DLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGG 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.9e-37, Sum P(2) = 2.9e-37
 Identities = 69/164 (42%), Positives = 98/164 (59%)

Query:   218 LVELLWENFLFKYPDLIWKF-DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK 276
             LVE++  N      +L+W     +  T+F +AV  R  ++F  ++ +     LL   KD 
Sbjct:   375 LVEMIRNN-----SELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDC 429

Query:   277 DGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDL 336
             DGN +LHLAG   P ++L+ V  A LQLQREL WF+EV+++ P    E  N +  TP ++
Sbjct:   430 DGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEI 489

Query:   337 FIKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGG 380
             F KEH+ L+++ E W+KD A SC +VA LI TV F A  TVPGG
Sbjct:   490 FTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGG 533

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
 Identities = 70/169 (41%), Positives = 100/169 (59%)

Query:   218 LVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
             LVE++  N      +L+W    +  T+F+ AV  R  ++F  ++ +     L    KD D
Sbjct:   336 LVEMIKNN-----SELLWSTGTS--TLFNTAVQVRQEKVFSLLYGLGDRKYLFLADKDSD 388

Query:   278 GNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLF 337
             GN++LHLAG  PP  +L  V  A LQ+QREL WF+E++++VP    E  N + LTP ++F
Sbjct:   389 GNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIF 448

Query:   338 IKEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEGIG 386
              KEHE ++ + E W+KD A SC +VA LI TV F A  TVPGG  +  G
Sbjct:   449 RKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSG 497

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 8.3e-31, Sum P(2) = 8.3e-31
 Identities = 63/149 (42%), Positives = 90/149 (60%)

Query:   233 LIWKFDE-NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPL 291
             L+W  +  +G  +F +AV  +  +IF  I  +      L  S DK  NNILH+AG+L   
Sbjct:   320 LLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHIAGRLSTP 379

Query:   292 NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETW 351
             ++L+ +S AAL++QRE  WF+EV+ +V  +   +KN D  TP  +F   HE L+K+GE W
Sbjct:   380 DQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEW 439

Query:   352 VKDNASSCMIVATLITTVVFGAAITVPGG 380
             +K  A++C  VA LI TV F A  TVPGG
Sbjct:   440 MKYTATACSFVAALIATVTFQAIFTVPGG 468

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 69/181 (38%), Positives = 101/181 (55%)

Query:     3 HSAPLELHVYSNPPVEE-IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTA 61
             H +PL  +V  N   ++ +R + ++LY+ AL GDW  A  I  E K  I   IT   +T 
Sbjct:    67 HHSPLH-NVQRNFSCDDKLRAKGVQLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETV 125

Query:    62 LHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDI 121
             LH+A AA    FV+ L+  +  E+ DLA RN  G TAL +AAASG VE+ K  +E N+D+
Sbjct:   126 LHIAVAAKHEGFVRNLLGSL--ESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDL 183

Query:   122 TMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETAL 180
              M+    K    PI  AA  GH E+V++LY+ T+     D++ + L   +I  D Y  ++
Sbjct:   184 PMIRGGGKTT--PIHMAALFGHGEMVKYLYKNTRFREFNDEEFVNLFHAVISADIYVRSI 241

Query:   181 H 181
             H
Sbjct:   242 H 242

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 100/369 (27%), Positives = 162/369 (43%)

Query:    32 LNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKR 91
             L+G+   A+V   E +  I + +  LG+TAL  AA    +D VK+L+K    E++  AK+
Sbjct:   105 LSGEEFDAEVA--EIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESI--AKK 160

Query:    92 NRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY 151
             NR G   L  AA  G   +V+  ++   D T+          P+V AA  GHTEVV  L 
Sbjct:   161 NRSGYDPLHIAAIQGHHAIVEVLLD--HDATLSQTFGPSNATPLVSAAMRGHTEVVNQLL 218

Query:   152 RETKNSLKDDDCIELLVKLIETDSYETALHVLARKN--------LTSSNQNPRGIFQRYF 203
              +  N L+           I   + + ALH+ AR+         L+   Q  R I ++  
Sbjct:   219 SKAGNLLE-----------ISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQ 267

Query:   204 NLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI 263
                  AV+ + + E+V+LL    L   P ++ + D++ +T  H+A   +  EI + +   
Sbjct:   268 TALHMAVKGQSS-EVVKLL----LDADPAIVMQPDKSCNTALHVATRKKRAEIVELLL-- 320

Query:   264 SSVADLLFDSKDKDGNNILHLAGKLPP----------LNRLNIVSVAALQLQRELL--WF 311
              S+ D   ++  +D    L +A  LP           L R   +    L   R+ L    
Sbjct:   321 -SLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTV 379

Query:   312 QEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVF 371
              ++K  V  +  + K  +         KE  +L ++G   + +  +S  +VA L  TV F
Sbjct:   380 TQIKNDVHIQLEQTKRTNKNVHN--ISKELRKLHREG---INNATNSVTVVAVLFATVAF 434

Query:   372 GAAITVPGG 380
              A  TVPGG
Sbjct:   435 AAIFTVPGG 443

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
 Identities = 89/342 (26%), Positives = 150/342 (43%)

Query:    54 ITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKA 113
             +  LG+T L  AA    ID VK+L+     E+L   ++N  G  AL  A + G   +V+ 
Sbjct:   139 VNELGETPLFTAAEKGNIDVVKELLPYTTIESL--MQKNLSGFDALHIACSQGHRSIVQL 196

Query:   114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIET 173
              +E    ++      +    P+V AA+ GH+EVV  L        KD   +E     I  
Sbjct:   197 LLEHEPQLSKTVA--QSNATPLVSAATRGHSEVVNELLA------KDSSLLE-----ISR 243

Query:   174 DSYETALHVLARKN-----LTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLF 228
              + + ALH+ AR+       T  +++P+ + +R    G  ++    A++ V       L 
Sbjct:   244 SNGKNALHLAARQGHVDIVRTLLDKDPQ-LARRTDKKGQTSLH--MAVKGVSSQVVRLLL 300

Query:   229 KY-PDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI--SSVADLLFDSKDK-D-GNNILH 283
             +  P ++   D+ G+T+ HIA   +  EI   + ++  ++V  L  D K   D    + H
Sbjct:   301 RADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTH 360

Query:   284 L--AGKLPP-LNRLNIVSVAALQLQRELL--WFQEVKKVVPRKFAEEKNNDGLTPGDLFI 338
                  ++   L+R   +    L   R+ L     E+KK V  +  + +  +    G    
Sbjct:   361 SEETAEIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDG--IA 418

Query:   339 KEHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGG 380
             KE  +L + G   + +  +S  +VA L  TV F A  TVPGG
Sbjct:   419 KELRKLHRAG---INNATNSVTVVAVLFATVAFAAIFTVPGG 457

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 89/344 (25%), Positives = 146/344 (42%)

Query:    58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             G+TAL+VAA     D VK L+K   ++++    + + G  A   AA +G+++++   +E 
Sbjct:    56 GETALYVAAEYGYTDMVKILMKH--SDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEA 113

Query:   118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
             N +++      K   L    AAS GH E+V FL          D  ++L    I   + +
Sbjct:   114 NPELSFTFDSSKTTALHT--AASQGHGEIVCFLL---------DKGVDLAA--IARSNGK 160

Query:   178 TALHVLARKNLT----SSNQNPRGIFQRYFNLGAKAVE---NERALELVELLWENFLFKY 230
             TALH  AR   T       +   G+  R    G  A+      +  E+V++L E      
Sbjct:   161 TALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME----AD 216

Query:   231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIF---EISSVA-----DLLFDSKDKDG-NNI 281
               LI   D  G+T  HIAV     EI + +    E+S VA     +   D  +K G + I
Sbjct:   217 GSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEI 276

Query:   282 LHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDL--FIK 339
             + L  K+   N  +I     ++        +E    +  +   +    G T  ++    K
Sbjct:   277 VPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAK 336

Query:   340 EHEELKKKGETWVKDNASSCMIVATLITTVVFGAAITVPGGYKE 383
                ++  +G   + +  +S  +VA LI TV F A   VPG Y +
Sbjct:   337 RVNKMHTEG---LNNAINSTTLVAILIATVAFAAIFNVPGQYTD 377

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 87/372 (23%), Positives = 167/372 (44%)

Query:    27 LYRVALNGDWARAKVIYDEHKDEIGDVITRL---GDTALHVAAAANRIDFVKKLVKKMKA 83
             L+  A  G+ ++ K +     DE+ +++++    G+T L+ AA       V++++K M  
Sbjct:   155 LHIAARTGNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVEEMLKHMDL 214

Query:    84 ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
             E   +A RN  G      AA  G +E++K  +E   ++ M    D      +  AA+ GH
Sbjct:   215 ETASIAARN--GFDPFHVAAKQGHLEVLKILLETFPNLAMTT--DLSCTTALHTAATQGH 270

Query:   144 TEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYF 203
              +VV  L     N          L K+ + +  +TALH  AR       +  + +  +  
Sbjct:   271 IDVVNLLLETDSN----------LAKIAKNNG-KTALHSAARMGHV---EVVKSLIGKDP 316

Query:   204 NLGAKA-VENERALEL-VELLWENFLFKY--PDL-IWKFDEN-GHTIFHIAVSNRMREIF 257
             ++G +   + + AL + V+   +  + +   PD+ +   ++N G+T  HIA +N+ R   
Sbjct:   317 SIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIA-TNKGR--I 373

Query:   258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKV 317
             K +  + S   +  +  +K G+  L ++ K+     ++++  A     ++L   Q   K 
Sbjct:   374 KIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNPAKQ 433

Query:   318 VPRKFAEEKNN------DGLTPGDLFIKEHEELKKKGETWVKDNASSCMIVATLITTVVF 371
             + +  ++ K+            G    K  + LKK   + + +  +S  +VA LI TV F
Sbjct:   434 LKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAF 493

Query:   372 GAAITVPGGYKE 383
              A  T+PG Y+E
Sbjct:   494 AAIFTIPGQYEE 505

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	396
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-12
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 19/136 (13%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           +     G T LH+AA+   ++ VK L++       D+  ++  G T L  AA +G +E+V
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIV 56

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLI 171
           K  +E   D+      DKD   P+  AA  G+ +VV+ L       LK    +       
Sbjct: 57  KLLLEKGADVNAR---DKDGNTPLHLAARNGNLDVVKLL-------LKHGADVN-----A 101

Query: 172 ETDSYETALHVLARKN 187
                 T LH+ A+  
Sbjct: 102 RDKDGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL 86
           L+  A NG     K++ +   D   +     G T LH+AA    ++ VK L++K      
Sbjct: 11  LHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLLLEK----GA 64

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
           D+  R++ G T L  AA +G++++VK  ++   D+      DKD   P+  AA  GH EV
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR---DKDGRTPLHLAAKNGHLEV 121

Query: 147 VEFL 150
           V+ L
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 351 WVKDNASSCMIVATLITTVVFGAAITVPGGYKE 383
           W++   +S ++VATLI TV F A  T PGGY +
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQ 35

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL 86
           L+  A NG+    K++ ++  D +    T   DTALH+AA    ++ VK L++       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD-VNLGDT---DTALHLAARNGNLEIVKLLLEHGA---- 52

Query: 87  DLAKRNRIGCTALFYAAASGSVELVK 112
           D+  +++ G TAL  AA +G++E+VK
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVK 78

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 62  LHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDI 121
           LH+AA    ++ VK L++K      D+   +    TAL  AA +G++E+VK  +E   D+
Sbjct: 1   LHLAAKNGNLELVKLLLEK----GADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADV 54

Query: 122 TMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
                 DKD    +  AA  G+ E+V+ L
Sbjct: 55  NAK---DKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK 112
           G TALH AA + R++ VK L++K     +D+ + +  G TAL  AA +G++E++K
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK----GVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 50/159 (31%)

Query: 128 DKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARK 186
           D+D   P+  AAS GH EVV+ L             +E    +   D+   T LH+    
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLL-------------LENGADVNAKDNDGRTPLHL---- 46

Query: 187 NLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFH 246
                                 A +N   LE+V+LL      +    +   D++G+T  H
Sbjct: 47  ----------------------AAKNGH-LEIVKLL-----LEKGADVNARDKDGNTPLH 78

Query: 247 IAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           +A  N   ++ K +  +   AD+  +++DKDG   LHLA
Sbjct: 79  LAARNGNLDVVKLL--LKHGADV--NARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 52  DVITRLGDTALHVAAAANR-----IDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASG 106
           +     GDT LH+AA         I+  K L++   A+      R+  G T L +AA +G
Sbjct: 100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNG 158

Query: 107 SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDDCI 164
             ++V+  +E   D       +   +  +  AA  G  E+V+ L       + LK +   
Sbjct: 159 DADIVELLLEAGADPN---SRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEG 215

Query: 165 ELLVKLIETDS 175
                + + + 
Sbjct: 216 VANANVSKRNI 226

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 45  EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA 102
           EH     +     G+T LH+AA    ++ V+ L+K      +DL  R+  G TAL  A
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP----GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 97  TALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           TAL  AA SG +ELVK  +E   DI      D+D    +  AA  G+ EV++ L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRT---DEDGNTALHIAAENGNLEVLKLL 53

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.99
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.98
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
PF13606	30	Ank_3: Ankyrin repeat	98.86
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.85
PF13606	30	Ank_3: Ankyrin repeat	98.84
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
PF13962	113	PGG: Domain of unknown function	98.81
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
KOG0522	560	consensus Ankyrin repeat protein [General function	98.72
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.72
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.66
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.63
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.5
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.28
KOG0511	516	consensus Ankyrin repeat protein [General function	98.18
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.18
KOG0511	516	consensus Ankyrin repeat protein [General function	98.15
KOG2384	223	consensus Major histocompatibility complex protein	98.09
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.07
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.07
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.07
KOG2384	223	consensus Major histocompatibility complex protein	97.92
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.07
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.82
KOG2505	591	consensus Ankyrin repeat protein [General function	96.17
KOG2505	591	consensus Ankyrin repeat protein [General function	96.0
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.96
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.22
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.67
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.25
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.95
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.96

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.5e-40  Score=313.85  Aligned_cols=282  Identities=13%  Similarity=0.109  Sum_probs=196.6

Q ss_pred             ccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcC--CHHHHHHHHHHhh
Q 037504            6 PLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAAN--RIDFVKKLVKKMK   82 (396)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~   82 (396)
                      .+++++..+++.. ++..|.||||+|+..|+.++++.||+. |++++.+ |..|.||||+|+..+  ..+++++|++.| 
T Consensus        54 iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~-d~~g~TpLh~A~~~~~~~~e~v~lLl~~G-  130 (446)
T PHA02946         54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNAC-DKQHKTPLYYLSGTDDEVIERINLLVQYG-  130 (446)
T ss_pred             HHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCCchHHHHHHHHHcC-
Confidence            4555665554433 466677777777777777777766653 6777666 677777777766654  356677777766 


Q ss_pred             hcccchhc-ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcC--CHHHHHHHHhhcc-cCC
Q 037504           83 AENLDLAK-RNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLG--HTEVVEFLYRETK-NSL  158 (396)
Q Consensus        83 ~~~~d~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~--~~~~v~~Ll~~~~-~~~  158 (396)
                       +++  +. .|..|.|||| |+..|+.+++++|++.|++   ++.+|..|+||||+|+..+  +.+++++|++.|+ .+.
T Consensus       131 -adi--n~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad---~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        131 -AKI--NNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE---ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             -CCc--ccccCCCCCcHHH-HHHCCChHHHHHHHhcccc---ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence             554  53 4666777775 4455667777777777766   4445566777777666543  3466777777666 444


Q ss_pred             CCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCccccccc
Q 037504          159 KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD  238 (396)
Q Consensus       159 ~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d  238 (396)
                      .+.+|             .||||+|+..+..                         ..++++.++      .+.++|.+|
T Consensus       204 ~d~~G-------------~TpLH~Aa~~~~~-------------------------~~~iv~lLl------~gadin~~d  239 (446)
T PHA02946        204 PDHDG-------------NTPLHIVCSKTVK-------------------------NVDIINLLL------PSTDVNKQN  239 (446)
T ss_pred             cCCCC-------------CCHHHHHHHcCCC-------------------------cHHHHHHHH------cCCCCCCCC
Confidence            55555             8999999987521                         244554433      367899999


Q ss_pred             CCCCcHHHHHHHcCc-HHHHHHHHhhccccc----------------ccccccc-CCCCchhhhhhcCCCCCcccccc--
Q 037504          239 ENGHTIFHIAVSNRM-REIFKFIFEISSVAD----------------LLFDSKD-KDGNNILHLAGKLPPLNRLNIVS--  298 (396)
Q Consensus       239 ~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~----------------~~~n~~d-~~g~TpLh~A~~~~~~~~~~~l~--  298 (396)
                      ..|+||||+|+..++ .+++++|+++|++..                .+++..+ ..|.||||+|+..|+.+++++|.  
T Consensus       240 ~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~  319 (446)
T PHA02946        240 KFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN  319 (446)
T ss_pred             CCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999988 489999999987420                0122332 46889999999999999999984  


Q ss_pred             ----chhHhHHHHHHHHHHHhhhc-chhhhhhhcCCCCCchhhHHHHhH
Q 037504          299 ----VAALQLQRELLWFQEVKKVV-PRKFAEEKNNDGLTPGDLFIKEHE  342 (396)
Q Consensus       299 ----~~~~~~~~~l~~~~~v~~l~-~~~~~~~~~~~g~tpl~~a~~~~~  342 (396)
                          .++++.+...++.+.++.++ +|++++.+ .+|.||+++|.+...
T Consensus       320 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~  367 (446)
T PHA02946        320 DIICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNN  367 (446)
T ss_pred             CCccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCC
Confidence                36788888777777777766 78999986 589999999987543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-41  Score=263.03  Aligned_cols=217  Identities=20%  Similarity=0.217  Sum_probs=185.4

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      +.++.+.+++.....-|+.++++.+-.++.+.|.+|+||||+||..|+.+++++|++.   +++.+|.+|..|+||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ---PNVKPDDKDDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc---CCCCCCCccccCCchhhhh
Confidence            4678888999988889999999877778888677999999999999999999999984   6666799999999999999


Q ss_pred             HHcCCHHHHHHHHhc-CCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHH
Q 037504          103 AASGSVELVKATMEG-NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      +..|+.++|+.|+.+ |+++   +..++.|+||||||+..|+.+++++|++.|+                          
T Consensus        80 ~s~g~~evVk~Ll~r~~adv---na~tn~G~T~LHyAagK~r~eIaqlLle~ga--------------------------  130 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADV---NATTNGGQTCLHYAAGKGRLEIAQLLLEKGA--------------------------  130 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCc---ceecCCCcceehhhhcCChhhHHHHHHhcCC--------------------------
Confidence            999999999999999 8984   4455679999999999999999999998775                          


Q ss_pred             HHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHH
Q 037504          182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIF  261 (396)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  261 (396)
                                                                         .++.+|..|.||||.|+..|+.+++++|+
T Consensus       131 ---------------------------------------------------~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen  131 ---------------------------------------------------LIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             ---------------------------------------------------CCcccccccCchhHHHHhccchhhHHHHH
Confidence                                                               35667888999999999999999999999


Q ss_pred             hhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          262 EISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       262 ~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      ..|+.    +|.+|+.|+||||.|.-.|+.+...+|                   ..+|++++..|++| ||+.++.-+.
T Consensus       160 ~~~a~----~n~qDk~G~TpL~~al~e~~~d~a~lL-------------------V~~gAd~~~edke~-t~~~~a~~~l  215 (226)
T KOG4412|consen  160 SQGAP----LNTQDKYGFTPLHHALAEGHPDVAVLL-------------------VRAGADTDREDKEG-TALRIACNEL  215 (226)
T ss_pred             hcCCC----CCcccccCccHHHHHHhccCchHHHHH-------------------HHhccceeeccccC-chHHHHHHHH
Confidence            99988    889999999999999777777766554                   56889999999988 9988877655


Q ss_pred             HHHHH
Q 037504          342 EELKK  346 (396)
Q Consensus       342 ~~~~~  346 (396)
                      .+..+
T Consensus       216 ~~alk  220 (226)
T KOG4412|consen  216 LEALK  220 (226)
T ss_pred             HHHHH
Confidence            44443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-40  Score=316.45  Aligned_cols=263  Identities=21%  Similarity=0.250  Sum_probs=218.5

Q ss_pred             CCCccccccccCCC--cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            3 HSAPLELHVYSNPP--VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         3 h~~~~~~~~~~~~~--~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      +.+.++.++..++.  ...+..|.||||.|+..|+.++|++|++. |++++.. +..|.||||.|+..|+.+++++|++.
T Consensus        13 d~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~-~~~~~t~L~~A~~~~~~~iv~~Ll~~   90 (434)
T PHA02874         13 DIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHI-NTKIPHPLLTAIKIGAHDIIKLLIDN   90 (434)
T ss_pred             CHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            44456666654332  23566789999999999999999999975 8999987 88999999999999999999999988


Q ss_pred             hhh-------------------cccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc
Q 037504           81 MKA-------------------ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL  141 (396)
Q Consensus        81 ~~~-------------------~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~  141 (396)
                      |..                   ..+|++.+|..|.||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..
T Consensus        91 g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad---~n~~d~~g~tpLh~A~~~  167 (434)
T PHA02874         91 GVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD---VNIEDDNGCYPIHIAIKH  167 (434)
T ss_pred             CCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHC
Confidence            721                   1124578899999999999999999999999999999   555677999999999999


Q ss_pred             CCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHH
Q 037504          142 GHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVE  220 (396)
Q Consensus       142 ~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (396)
                      |+.+++++|++.++ .+..+..|             .||||+|+..|                           ..++++
T Consensus       168 ~~~~iv~~Ll~~g~~~n~~~~~g-------------~tpL~~A~~~g---------------------------~~~iv~  207 (434)
T PHA02874        168 NFFDIIKLLLEKGAYANVKDNNG-------------ESPLHNAAEYG---------------------------DYACIK  207 (434)
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCC-------------CCHHHHHHHcC---------------------------CHHHHH
Confidence            99999999999998 55666666             89999999988                           356776


Q ss_pred             HHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCC-CCCccccccc
Q 037504          221 LLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLP-PLNRLNIVSV  299 (396)
Q Consensus       221 ~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~-~~~~~~~l~~  299 (396)
                      ++++     .+.+++.++..|.||||+|+..+. +++++|+ .|++    +|.+|..|+||||+|+..+ +.+++++|  
T Consensus       208 ~Ll~-----~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~----in~~d~~G~TpLh~A~~~~~~~~iv~~L--  274 (434)
T PHA02874        208 LLID-----HGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS----INDQDIDGSTPLHHAINPPCDIDIIDIL--  274 (434)
T ss_pred             HHHh-----CCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC----CCCcCCCCCCHHHHHHhcCCcHHHHHHH--
Confidence            6654     567788888999999999998765 5666666 5777    7889999999999999875 56777766  


Q ss_pred             hhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          300 AALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       300 ~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                                       +..|++++.+|..|+||+++|.+.
T Consensus       275 -----------------l~~gad~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        275 -----------------LYHKADISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             -----------------HHCcCCCCCCCCCCCCHHHHHHHh
Confidence                             668899999999999999999764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-40  Score=318.00  Aligned_cols=263  Identities=15%  Similarity=0.141  Sum_probs=225.4

Q ss_pred             CCccccccccCCCcc-cccccchHHHHHHHcC---CHHHHHHHHHhCccccccccCCCCchHHHHHHHcC-CHHHHHHHH
Q 037504            4 SAPLELHVYSNPPVE-EIRTRRLKLYRVALNG---DWARAKVIYDEHKDEIGDVITRLGDTALHVAAAAN-RIDFVKKLV   78 (396)
Q Consensus         4 ~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll   78 (396)
                      .+++++++..+++.. .+..|.||||+|+..|   +.++++.|++. |++++.+ +..|.||||+|+..| +.+++++|+
T Consensus        27 ~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~-~~~g~TpLh~A~~~~~~~~iv~lLl  104 (471)
T PHA03095         27 VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAP-ERCGFTPLHLYLYNATTLDVIKLLI  104 (471)
T ss_pred             HHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCcHHHHHHHH
Confidence            356777887776555 5778999999999999   99999999975 9999998 889999999999999 599999999


Q ss_pred             HHhhhcccchhcccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcC--CHHHHHHHHhhc
Q 037504           79 KKMKAENLDLAKRNRIGCTALFYAA--ASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLG--HTEVVEFLYRET  154 (396)
Q Consensus        79 ~~~~~~~~d~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~--~~~~v~~Ll~~~  154 (396)
                      +.|  +++  +.+|..|+||||+|+  ..++.+++++|+++|++   ++..|..|.||||+|+..+  +.+++++|++.|
T Consensus       105 ~~g--a~i--n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad---~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        105 KAG--ADV--NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD---VNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HcC--CCC--CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            998  777  999999999999999  55688999999999999   5566779999999998876  689999999999


Q ss_pred             c-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcc
Q 037504          155 K-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDL  233 (396)
Q Consensus       155 ~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~  233 (396)
                      + ....+..|             .||||+++.....                         ..++++.++     ..+.+
T Consensus       178 ~~~~~~d~~g-------------~t~Lh~~~~~~~~-------------------------~~~i~~~Ll-----~~g~~  214 (471)
T PHA03095        178 ADVYAVDDRF-------------RSLLHHHLQSFKP-------------------------RARIVRELI-----RAGCD  214 (471)
T ss_pred             CCCcccCCCC-------------CCHHHHHHHHCCC-------------------------cHHHHHHHH-----HcCCC
Confidence            8 33345556             8999998875311                         244555544     46888


Q ss_pred             cccccCCCCcHHHHHHHcCcH--HHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHH
Q 037504          234 IWKFDENGHTIFHIAVSNRMR--EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWF  311 (396)
Q Consensus       234 i~~~d~~g~t~Lh~A~~~~~~--~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~  311 (396)
                      ++.+|..|+||||+|+..|+.  .+++.|++.|++    +|.+|..|+||||+|+..|+.+++++|              
T Consensus       215 ~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d----in~~d~~g~TpLh~A~~~~~~~~v~~L--------------  276 (471)
T PHA03095        215 PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS----INARNRYGQTPLHYAAVFNNPRACRRL--------------  276 (471)
T ss_pred             CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH--------------
Confidence            999999999999999999864  688999999999    899999999999999999999888887              


Q ss_pred             HHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          312 QEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       312 ~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                           +..|++++.+|.+|+||+++|....
T Consensus       277 -----L~~gad~n~~~~~g~tpl~~A~~~~  301 (471)
T PHA03095        277 -----IALGADINAVSSDGNTPLSLMVRNN  301 (471)
T ss_pred             -----HHcCCCCcccCCCCCCHHHHHHHhC
Confidence                 7789999999999999999998643

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=325.93  Aligned_cols=279  Identities=18%  Similarity=0.144  Sum_probs=222.7

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      +|..++++|+..+++.. .+..|.||||+|+..|+.++|+.|++. |++++.. +..|.||||+|+..|+.+++++|++.
T Consensus       156 ~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~  233 (682)
T PHA02876        156 DELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNII-ALDDLSVLECAVDSKNIDTIKAIIDN  233 (682)
T ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            56778888998887665 677899999999999999999999985 8999888 89999999999999999999888765


Q ss_pred             hhh-------------------------cccchhcccCCCCcHHHHHHHcCCH-HHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           81 MKA-------------------------ENLDLAKRNRIGCTALFYAAASGSV-ELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        81 ~~~-------------------------~~~d~~~~d~~g~tpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..                         ...+++..|..|.||||+|+..++. +++++|++.|++   ++.+|..|.||
T Consensus       234 ~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad---in~~d~~g~Tp  310 (682)
T PHA02876        234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD---VNAKNIKGETP  310 (682)
T ss_pred             CCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC---CCCcCCCCCCH
Confidence            411                         1123477788899999999999986 689999999998   55667789999


Q ss_pred             HHHHHhcC-CHHHHHHHHhhcc-cCCCCcchhHHHHHHhhcc---------------------chhhHHHHHHhcCCCCC
Q 037504          135 IVGAASLG-HTEVVEFLYRETK-NSLKDDDCIELLVKLIETD---------------------SYETALHVLARKNLTSS  191 (396)
Q Consensus       135 Lh~A~~~~-~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~---------------------~~~t~L~~a~~~~~~~~  191 (396)
                      ||+|+..| ..+++++|+..|+ .+..+..|.++||.+...+                     .|.||||+|+..+    
T Consensus       311 Lh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~----  386 (682)
T PHA02876        311 LYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN----  386 (682)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcC----
Confidence            99999998 5899999999988 6677788877777765421                     2467777777766    


Q ss_pred             CCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCc-HHHHHHHHhhccccccc
Q 037504          192 NQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRM-REIFKFIFEISSVADLL  270 (396)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~  270 (396)
                                             ..++++.++     ..+.+++..+..|.||||+|+..++ ..++++|+++|++    
T Consensus       387 -----------------------~~~iv~~Ll-----~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad----  434 (682)
T PHA02876        387 -----------------------NVVIINTLL-----DYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN----  434 (682)
T ss_pred             -----------------------CHHHHHHHH-----HCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC----
Confidence                                   355665554     3567777778888888888876554 4567888888887    


Q ss_pred             cccccCCCCchhhhhhcCC-CCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          271 FDSKDKDGNNILHLAGKLP-PLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       271 ~n~~d~~g~TpLh~A~~~~-~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                      +|.+|..|+||||+|+..+ +.+++++|                   +..|++++.+|..|.||+++|.+.
T Consensus       435 in~~d~~G~TpLh~Aa~~~~~~~iv~lL-------------------l~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        435 VNSKNKDLSTPLHYACKKNCKLDVIEML-------------------LDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCcCCCCCChHHHHHHHhCCcHHHHHHH-------------------HHCCCCCCCCCCCCCCHHHHHHHh
Confidence            7788888888888888765 45666665                   668999999999999999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.7e-39  Score=315.88  Aligned_cols=280  Identities=12%  Similarity=0.026  Sum_probs=217.3

Q ss_pred             CCCccccccccC-CCcc-c-ccccchHHHHHHH--cCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCC--HHHHH
Q 037504            3 HSAPLELHVYSN-PPVE-E-IRTRRLKLYRVAL--NGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANR--IDFVK   75 (396)
Q Consensus         3 h~~~~~~~~~~~-~~~~-~-~~~g~t~Lh~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~   75 (396)
                      +.+.+++|+..+ ++.. . +..|.||||.|+.  .++.++++.|++. |++++.+ |..|.||||+|+..|+  .++|+
T Consensus       154 ~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~k-D~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        154 DLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQ-NNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCCCHHHHH
Confidence            446788899887 5544 3 7889999999865  4678999999975 9999998 9999999999999995  58999


Q ss_pred             HHHHHhhhcccchhcccCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhcC
Q 037504           76 KLVKKMKAENLDLAKRNRIGCTALFYA-------------------------------------AASGSVELVKATMEGN  118 (396)
Q Consensus        76 ~Ll~~~~~~~~d~~~~d~~g~tpLh~A-------------------------------------~~~g~~~~v~~Ll~~g  118 (396)
                      +|++.|  +++  +.+|..|+||||+|                                     ++.|+.+++++|+++|
T Consensus       232 lLLe~G--ADV--N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        232 KIIELG--GDM--DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHcC--CCC--CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            999999  777  99999999999975                                     4457889999999999


Q ss_pred             CCCccccCCCCCCCcHHHHHHh--cCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCC
Q 037504          119 EDITMVPQDDKDRMLPIVGAAS--LGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNP  195 (396)
Q Consensus       119 ~~~~~~~~~d~~g~tpLh~A~~--~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~  195 (396)
                      ++   ++.+|..|+||||+|+.  .++.+++++|++.|+ .+..+..|             +||||+|+.......    
T Consensus       308 Ad---IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G-------------~TPLH~A~~~lav~~----  367 (764)
T PHA02716        308 VK---LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIG-------------NTVLHTYLSMLSVVN----  367 (764)
T ss_pred             Cc---eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCC-------------CCHHHHHHHhhhhhc----
Confidence            99   56678899999999764  467899999999998 56677777             788888765321000    


Q ss_pred             cchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHH----HHcCcHHHHHHHHhhcccc----
Q 037504          196 RGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIA----VSNRMREIFKFIFEISSVA----  267 (396)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A----~~~~~~~~v~~Ll~~g~~~----  267 (396)
                           .+.. ..   ......++++.|++     .+++++.+|..|+||||.+    ...++.+++++|++.|+..    
T Consensus       368 -----~ld~-~~---~~~~~~eVVklLL~-----~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~  433 (764)
T PHA02716        368 -----ILDP-ET---DNDIRLDVIQCLIS-----LGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKH  433 (764)
T ss_pred             -----cccc-cc---cccChHHHHHHHHH-----CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhh
Confidence                 0000 00   00113566766653     6889999999999999943    2346789999998865310    


Q ss_pred             -----------------------------------------------------ccccccccCCCCchhhhhhcCCCCCcc
Q 037504          268 -----------------------------------------------------DLLFDSKDKDGNNILHLAGKLPPLNRL  294 (396)
Q Consensus       268 -----------------------------------------------------~~~~n~~d~~g~TpLh~A~~~~~~~~~  294 (396)
                                                                           ...+|.+|..|+||||+|+..|+.+++
T Consensus       434 ~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v  513 (764)
T PHA02716        434 RILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANI  513 (764)
T ss_pred             hhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccch
Confidence                                                                 001356688999999999999887655


Q ss_pred             -----ccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          295 -----NIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       295 -----~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                           ++|                   +..|++++.+|++|+|||++|.+.+
T Consensus       514 ~~e~~k~L-------------------L~~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        514 VMDSFVYL-------------------LSIQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             hHHHHHHH-------------------HhCCCCCcccCCCCCCHHHHHHHcC
Confidence                 555                   6689999999999999999999755

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-39  Score=324.28  Aligned_cols=280  Identities=16%  Similarity=0.111  Sum_probs=211.9

Q ss_pred             CCCCccccccccCCC--cccccccchHHHHHH------------------------------------------------
Q 037504            2 AHSAPLELHVYSNPP--VEEIRTRRLKLYRVA------------------------------------------------   31 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~--~~~~~~g~t~Lh~A~------------------------------------------------   31 (396)
                      ||.++|+.++..+|.  ...+..|.||||+|+                                                
T Consensus        52 g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~  131 (682)
T PHA02876         52 RQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISG  131 (682)
T ss_pred             HhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            688888998888775  346777889999666                                                


Q ss_pred             ----------------------HcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchh
Q 037504           32 ----------------------LNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA   89 (396)
Q Consensus        32 ----------------------~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~   89 (396)
                                            ..|+.++++.|++. |++++.+ |..|+||||+|+..|+.++|++|++.|  +++  +
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~-Gadvn~~-d~~G~TpLh~Aa~~G~~~iv~~LL~~G--ad~--n  205 (682)
T PHA02876        132 NDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG-GADVNAK-DIYCITPIHYAAERGNAKMVNLLLSYG--ADV--N  205 (682)
T ss_pred             CcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCC--CCc--C
Confidence                                  55778888888875 9999988 999999999999999999999999998  777  8


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc--------------------------cccCCCCCCCcHHHHHHhcCC
Q 037504           90 KRNRIGCTALFYAAASGSVELVKATMEGNEDIT--------------------------MVPQDDKDRMLPIVGAASLGH  143 (396)
Q Consensus        90 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~--------------------------~~~~~d~~g~tpLh~A~~~~~  143 (396)
                      ..+..|.||||+|+..|+.+++++|++.++++.                          .++..|..|.||||+|+..++
T Consensus       206 ~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~  285 (682)
T PHA02876        206 IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPS  285 (682)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            899999999999999999988888776655432                          144556688999999999888


Q ss_pred             H-HHHHHHHhhcc-cCCCCcchhHHHHHHhhccc---------------------hhhHHHHHHhcCCCCCCCCCcchhh
Q 037504          144 T-EVVEFLYRETK-NSLKDDDCIELLVKLIETDS---------------------YETALHVLARKNLTSSNQNPRGIFQ  200 (396)
Q Consensus       144 ~-~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~---------------------~~t~L~~a~~~~~~~~~~~~~~~~~  200 (396)
                      . +++++|++.++ .+..+.+|.||||.+...+.                     +.||||+|+..+.            
T Consensus       286 ~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~------------  353 (682)
T PHA02876        286 LSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR------------  353 (682)
T ss_pred             HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCC------------
Confidence            5 58888888888 56677778655555544331                     2455555554331            


Q ss_pred             hhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCc
Q 037504          201 RYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNN  280 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~T  280 (396)
                                    ..++++.+     ...+.+++.+|..|+||||+|+..|+.+++++|+++|++    ++..+..|.|
T Consensus       354 --------------~~~iv~lL-----l~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad----~~~~~~~g~T  410 (682)
T PHA02876        354 --------------NKDIVITL-----LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD----IEALSQKIGT  410 (682)
T ss_pred             --------------cHHHHHHH-----HHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCCc
Confidence                          12333322     346777788888888888888888888888888888887    6777778888


Q ss_pred             hhhhhhcCCCC-CccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          281 ILHLAGKLPPL-NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       281 pLh~A~~~~~~-~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      |||+|+..++. .++++|                   +..|++++.+|..|+||||+|+...
T Consensus       411 ~Lh~A~~~~~~~~~vk~L-------------------l~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        411 ALHFALCGTNPYMSVKTL-------------------IDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             hHHHHHHcCCHHHHHHHH-------------------HhCCCCCCcCCCCCChHHHHHHHhC
Confidence            88888765542 223333                   4579999999999999999998753

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-40  Score=256.04  Aligned_cols=192  Identities=24%  Similarity=0.330  Sum_probs=171.1

Q ss_pred             cccccccCC---CcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhh
Q 037504            7 LELHVYSNP---PVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA   83 (396)
Q Consensus         7 ~~~~~~~~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~   83 (396)
                      ++-+..+.+   +...|.+|+||||+||..|+.+++++|+++.+..+|.+ |..||||||+||..|+.|+|+.|+.+   
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~~evVk~Ll~r---   94 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGNDEVVKELLNR---   94 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCcHHHHHHHhcC---
Confidence            344444544   45567799999999999999999999998878889998 99999999999999999999999998   


Q ss_pred             cccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcch
Q 037504           84 ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDC  163 (396)
Q Consensus        84 ~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g  163 (396)
                      +..|+|+.++.|+||||||+..|.++|+++|+++|+.   ++.+|+.|+||||.|+.-|..+++++|+..++        
T Consensus        95 ~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~---i~~kD~~~qtplHRAAavGklkvie~Li~~~a--------  163 (226)
T KOG4412|consen   95 SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL---IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA--------  163 (226)
T ss_pred             CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC---CcccccccCchhHHHHhccchhhHHHHHhcCC--------
Confidence            3445599999999999999999999999999999988   77889999999999999999999999998765        


Q ss_pred             hHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCc
Q 037504          164 IELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHT  243 (396)
Q Consensus       164 ~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t  243 (396)
                                                                                           .+|..|+.|+|
T Consensus       164 ---------------------------------------------------------------------~~n~qDk~G~T  174 (226)
T KOG4412|consen  164 ---------------------------------------------------------------------PLNTQDKYGFT  174 (226)
T ss_pred             ---------------------------------------------------------------------CCCcccccCcc
Confidence                                                                                 36678999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhc
Q 037504          244 IFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK  287 (396)
Q Consensus       244 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~  287 (396)
                      |||.|...|+.++..+|+++|++    ++..|++| ||+-.|+.
T Consensus       175 pL~~al~e~~~d~a~lLV~~gAd----~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  175 PLHHALAEGHPDVAVLLVRAGAD----TDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHHHhccCchHHHHHHHhccc----eeeccccC-chHHHHHH
Confidence            99999888999999999999999    78899999 99887754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-39  Score=312.24  Aligned_cols=248  Identities=20%  Similarity=0.192  Sum_probs=224.9

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHH-----HHHcCCHHHHHHHHHHhhhcccchhcc
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHV-----AAAANRIDFVKKLVKKMKAENLDLAKR   91 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~d~~~~   91 (396)
                      ...+..+.||||.|+..|+.++|+.|++. |++++.. +..|.||||+     |+..|+.+++++|++.|  +++  +..
T Consensus        29 ~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g--a~i--~~~  102 (480)
T PHA03100         29 DYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG--ANV--NAP  102 (480)
T ss_pred             hhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHHHHHHCC--CCC--CCC
Confidence            34677899999999999999999999986 8999888 8899999999     99999999999999998  777  999


Q ss_pred             cCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcC--CHHHHHHHHhhcc-cCCCCcchhHH
Q 037504           92 NRIGCTALFYAA--ASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLG--HTEVVEFLYRETK-NSLKDDDCIEL  166 (396)
Q Consensus        92 d~~g~tpLh~A~--~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~--~~~~v~~Ll~~~~-~~~~~~~g~~~  166 (396)
                      |..|.||||+|+  ..|+.+++++|+++|++   ++..+..|.||||+|+..|  +.+++++|++.|+ .+..+..|   
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g---  176 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGAN---VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYG---  176 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCC---
Confidence            999999999999  99999999999999999   5566779999999999999  9999999999998 45555566   


Q ss_pred             HHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCC-----
Q 037504          167 LVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENG-----  241 (396)
Q Consensus       167 l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g-----  241 (396)
                                .||||+|+..|                           ..++++.+++     .+.+++..+..|     
T Consensus       177 ----------~tpL~~A~~~~---------------------------~~~iv~~Ll~-----~ga~~~~~~~~~~~~~~  214 (480)
T PHA03100        177 ----------YTPLHIAVEKG---------------------------NIDVIKFLLD-----NGADINAGDIETLLFTI  214 (480)
T ss_pred             ----------CCHHHHHHHhC---------------------------CHHHHHHHHH-----cCCCccCCCCCCCcHHH
Confidence                      89999999988                           3677776664     577888888888     


Q ss_pred             -CcHHHHHHHcCc--HHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhc
Q 037504          242 -HTIFHIAVSNRM--REIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVV  318 (396)
Q Consensus       242 -~t~Lh~A~~~~~--~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~  318 (396)
                       .||||+|+..++  .+++++|+++|++    +|.+|..|.||||+|+..|+.+++++|                   +.
T Consensus       215 ~~t~l~~a~~~~~~~~~iv~~Ll~~g~d----in~~d~~g~TpL~~A~~~~~~~iv~~L-------------------l~  271 (480)
T PHA03100        215 FETPLHIAACYNEITLEVVNYLLSYGVP----INIKDVYGFTPLHYAVYNNNPEFVKYL-------------------LD  271 (480)
T ss_pred             HHhHHHHHHHhCcCcHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH-------------------HH
Confidence             999999999999  9999999999999    899999999999999999999988887                   77


Q ss_pred             chhhhhhhcCCCCCchhhHHHHh
Q 037504          319 PRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       319 ~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      .|++++.+|..|.||+++|.+..
T Consensus       272 ~gad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        272 LGANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             cCCCCCccCCCCCcHHHHHHHhC
Confidence            89999999999999999998643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=281.66  Aligned_cols=225  Identities=16%  Similarity=0.160  Sum_probs=191.6

Q ss_pred             CccccccccCCCcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhc
Q 037504            5 APLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE   84 (396)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   84 (396)
                      +++++|...++ ...|..|.||||+|+..|+.++++.|++. +++++..   +|+||||+|+..|+.+++++|++.|  +
T Consensus        13 ~~~~~Lis~~a-~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~G--a   85 (284)
T PHA02791         13 QLKSFLSSKDA-FKADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLFSG--M   85 (284)
T ss_pred             HHHHHHHhCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHCC--C
Confidence            35677777666 45788999999999999999999999975 7877754   4789999999999999999999988  7


Q ss_pred             ccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCC-cHHHHHHhcCCHHHHHHHHhhcccCCCCcch
Q 037504           85 NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRM-LPIVGAASLGHTEVVEFLYRETKNSLKDDDC  163 (396)
Q Consensus        85 ~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g  163 (396)
                      ++  +.+|..|+||||+|+..|+.+++++|+++|+++   +.++..|+ ||||+|+..|+.+++++|+++++.......|
T Consensus        86 dv--n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi---n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g  160 (284)
T PHA02791         86 DD--SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL---MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL  160 (284)
T ss_pred             CC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc---CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccC
Confidence            76  899999999999999999999999999999994   45566775 8999999999999999999987522211234


Q ss_pred             hHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCc
Q 037504          164 IELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHT  243 (396)
Q Consensus       164 ~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t  243 (396)
                                   .||||+|++.|                           ..++++.|++     ++++++.+|..|.|
T Consensus       161 -------------~TpLh~Aa~~g---------------------------~~eiv~lLL~-----~gAd~n~~d~~g~t  195 (284)
T PHA02791        161 -------------LSCIHITIKNG---------------------------HVDMMILLLD-----YMTSTNTNNSLLFI  195 (284)
T ss_pred             -------------ccHHHHHHHcC---------------------------CHHHHHHHHH-----CCCCCCcccCCCCC
Confidence                         89999999999                           3677776653     68889999999998


Q ss_pred             H-HHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          244 I-FHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       244 ~-Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      | ||+|+..|+.+++++|+++|++    +|.+|.+| |||      ++.|++++|
T Consensus       196 ~~L~~Aa~~~~~e~v~lLl~~Ga~----in~~~~~~-~~l------~~~e~~~~l  239 (284)
T PHA02791        196 PDIKLAIDNKDLEMLQALFKYDIN----IYSVNLEN-VLL------DDAEIAKMI  239 (284)
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC----CccCcccC-ccC------CCHHHHHHH
Confidence            7 9999999999999999999999    89999955 776      666777776

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=296.41  Aligned_cols=241  Identities=19%  Similarity=0.195  Sum_probs=212.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      ..|+.|+..|+.+.++.|++..+..++.. +..|.||||.|+..|+.++|++|++.|  +++  +..+..|.||||+|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~--n~~~~~~~t~L~~A~~   77 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIKHG--ADI--NHINTKIPHPLLTAIK   77 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC--CCCCCCCCCHHHHHHH
Confidence            46899999999999999999878878877 888999999999999999999999998  776  8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCc--------------------cccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcch
Q 037504          105 SGSVELVKATMEGNEDIT--------------------MVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDC  163 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~--------------------~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g  163 (396)
                      .|+.+++++|+++|+++.                    .++.+|..|.||||+|+..|+.+++++|++.|+ .+..+.+|
T Consensus        78 ~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g  157 (434)
T PHA02874         78 IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG  157 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCC
Confidence            999999999999887642                    144567789999999999999999999999998 56666777


Q ss_pred             hHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCc
Q 037504          164 IELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHT  243 (396)
Q Consensus       164 ~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t  243 (396)
                                   .||||+|+..+                           ..++++.+++     .+..++..|..|+|
T Consensus       158 -------------~tpLh~A~~~~---------------------------~~~iv~~Ll~-----~g~~~n~~~~~g~t  192 (434)
T PHA02874        158 -------------CYPIHIAIKHN---------------------------FFDIIKLLLE-----KGAYANVKDNNGES  192 (434)
T ss_pred             -------------CCHHHHHHHCC---------------------------cHHHHHHHHH-----CCCCCCCCCCCCCC
Confidence                         89999999988                           4677776664     57788899999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhh
Q 037504          244 IFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFA  323 (396)
Q Consensus       244 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~  323 (396)
                      |||+|+..|+.+++++|++.|++    ++.++..|.||||+|+..+. +.                    ++.+..++++
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g~~----i~~~~~~g~TpL~~A~~~~~-~~--------------------i~~Ll~~~~i  247 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHGNH----IMNKCKNGFTPLHNAIIHNR-SA--------------------IELLINNASI  247 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC----CcCCCCCCCCHHHHHHHCCh-HH--------------------HHHHHcCCCC
Confidence            99999999999999999999999    88999999999999998764 22                    2235578899


Q ss_pred             hhhcCCCCCchhhHHHH
Q 037504          324 EEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       324 ~~~~~~g~tpl~~a~~~  340 (396)
                      +.+|..|+||||+|...
T Consensus       248 n~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        248 NDQDIDGSTPLHHAINP  264 (434)
T ss_pred             CCcCCCCCCHHHHHHhc
Confidence            99999999999999874

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-38  Score=302.74  Aligned_cols=240  Identities=17%  Similarity=0.155  Sum_probs=203.6

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHH
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL   99 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpL   99 (396)
                      ...+.||||+|+..|+.++|+.|++. |++++.+ |..|.||||+||..|+.+++++|++.+  ...  +.  ..+.+|+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~~--~~~--~~--~~~~~~l  105 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRSI--NKC--SV--FYTLVAI  105 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHCccHhHHHHHHHHH--hcc--cc--ccchhhH
Confidence            44678999999999999999999985 8999988 999999999999999999999999987  433  22  5678999


Q ss_pred             HHHHHcCCHH---------------------------------HHHHHHhcCCCCccccCCCCC-CCcHHHHHHhcCCHH
Q 037504          100 FYAAASGSVE---------------------------------LVKATMEGNEDITMVPQDDKD-RMLPIVGAASLGHTE  145 (396)
Q Consensus       100 h~A~~~g~~~---------------------------------~v~~Ll~~g~~~~~~~~~d~~-g~tpLh~A~~~~~~~  145 (396)
                      |.|+..++.+                                 ++++|+++|++   ++..|.. |.||||+|+..|+.+
T Consensus       106 ~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad---in~~~~~~g~tpLh~A~~~~~~~  182 (477)
T PHA02878        106 KDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD---INMKDRHKGNTALHYATENKDQR  182 (477)
T ss_pred             HHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC---CCccCCCCCCCHHHHHHhCCCHH
Confidence            9998887654                                 55666667777   4455666 999999999999999


Q ss_pred             HHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHH
Q 037504          146 VVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE  224 (396)
Q Consensus       146 ~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  224 (396)
                      ++++|++.|+ .+..+..|             .||||+|++.+                           ..++++.+++
T Consensus       183 iv~~Ll~~gad~n~~d~~g-------------~tpLh~A~~~~---------------------------~~~iv~~Ll~  222 (477)
T PHA02878        183 LTELLLSYGANVNIPDKTN-------------NSPLHHAVKHY---------------------------NKPIVHILLE  222 (477)
T ss_pred             HHHHHHHCCCCCCCcCCCC-------------CCHHHHHHHhC---------------------------CHHHHHHHHH
Confidence            9999999998 55566667             89999999988                           3667776654


Q ss_pred             HHHHhCCcccccccCCCCcHHHHHHHc-CcHHHHHHHHhhccccccccccccC-CCCchhhhhhcCCCCCccccccchhH
Q 037504          225 NFLFKYPDLIWKFDENGHTIFHIAVSN-RMREIFKFIFEISSVADLLFDSKDK-DGNNILHLAGKLPPLNRLNIVSVAAL  302 (396)
Q Consensus       225 ~ll~~~~~~i~~~d~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~n~~d~-~g~TpLh~A~~~~~~~~~~~l~~~~~  302 (396)
                           .+.+++.+|..|+||||+|+.. ++.+++++|+++|++    +|.++. .|.||||+|+  ++.+++++|     
T Consensus       223 -----~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad----vn~~~~~~g~TpLh~A~--~~~~~v~~L-----  286 (477)
T PHA02878        223 -----NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD----VNAKSYILGLTALHSSI--KSERKLKLL-----  286 (477)
T ss_pred             -----cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC----CCccCCCCCCCHHHHHc--cCHHHHHHH-----
Confidence                 6888999999999999999976 689999999999999    888886 8999999994  455666665     


Q ss_pred             hHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          303 QLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       303 ~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                                    +..|++++.+|..|.||+++|.+.
T Consensus       287 --------------l~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        287 --------------LEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             --------------HHCCCCCCCcCCCCCCHHHHHHHH
Confidence                          668999999999999999999864

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.7e-38  Score=297.56  Aligned_cols=240  Identities=18%  Similarity=0.120  Sum_probs=212.2

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      .+++||.|+..|+.++++.|++. |++++.. +..|.||||+|+..|+.+++++|++.|  +++  +..+..+.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~--~~~~~~~~t~L~~A   75 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFE-IYDGISPIKLAMKFRDSEAIKLLMKHG--AIP--DVKYPDIESELHDA   75 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCC--CCc--cccCCCcccHHHHH
Confidence            46899999999999999999985 8999987 889999999999999999999999998  665  77888899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHH
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      +..|+.+++++|++.|++....  .+..|.||||+|+..|+.+++++|++.|+ .+..+..|             .||||
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g-------------~tpLh  140 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFADDV--FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK-------------FSPLH  140 (413)
T ss_pred             HHCCCHHHHHHHHHcCCccccc--ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC-------------CCHHH
Confidence            9999999999999999875333  34489999999999999999999999998 55666666             89999


Q ss_pred             HHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHH
Q 037504          182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIF  261 (396)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  261 (396)
                      +|+..|                           ..++++.+++     .+.+++.+|..|+||||+|+..|+.+++++|+
T Consensus       141 ~A~~~~---------------------------~~~~v~~Ll~-----~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll  188 (413)
T PHA02875        141 LAVMMG---------------------------DIKGIELLID-----HKACLDIEDCCGCTPLIIAMAKGDIAICKMLL  188 (413)
T ss_pred             HHHHcC---------------------------CHHHHHHHHh-----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999988                           3567776654     57789999999999999999999999999999


Q ss_pred             hhccccccccccccCCC-CchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhh---cCCCCCchhhH
Q 037504          262 EISSVADLLFDSKDKDG-NNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEK---NNDGLTPGDLF  337 (396)
Q Consensus       262 ~~g~~~~~~~n~~d~~g-~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~---~~~g~tpl~~a  337 (396)
                      ++|++    ++..+..| .||+|+|+..++.+++++|                   +..|++++..   +..|.||++++
T Consensus       189 ~~ga~----~n~~~~~~~~t~l~~A~~~~~~~iv~~L-------------------l~~gad~n~~~~~~~~~~t~l~~~  245 (413)
T PHA02875        189 DSGAN----IDYFGKNGCVAALCYAIENNKIDIVRLF-------------------IKRGADCNIMFMIEGEECTILDMI  245 (413)
T ss_pred             hCCCC----CCcCCCCCCchHHHHHHHcCCHHHHHHH-------------------HHCCcCcchHhhcCCCchHHHHHH
Confidence            99999    78888877 4899999999999999888                   7788888765   67789999876


Q ss_pred             H
Q 037504          338 I  338 (396)
Q Consensus       338 ~  338 (396)
                      .
T Consensus       246 ~  246 (413)
T PHA02875        246 C  246 (413)
T ss_pred             H
Confidence            4

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-38  Score=276.95  Aligned_cols=223  Identities=15%  Similarity=0.064  Sum_probs=189.2

Q ss_pred             cCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHH
Q 037504           33 NGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK  112 (396)
Q Consensus        33 ~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~  112 (396)
                      .++.++++.|++. +++  .. |.+|+||||+|+..|+.+++++|++.|  +++  +.+  +|.||||+|+..|+.++++
T Consensus         9 ~~~~~~~~~Lis~-~a~--~~-D~~G~TpLh~Aa~~g~~eiv~~Ll~~g--a~~--n~~--d~~TpLh~Aa~~g~~eiV~   78 (284)
T PHA02791          9 WKSKQLKSFLSSK-DAF--KA-DVHGHSALYYAIADNNVRLVCTLLNAG--ALK--NLL--ENEFPLHQAATLEDTKIVK   78 (284)
T ss_pred             cCHHHHHHHHHhC-CCC--CC-CCCCCcHHHHHHHcCCHHHHHHHHHCc--CCC--cCC--CCCCHHHHHHHCCCHHHHH
Confidence            4567788888774 663  44 899999999999999999999999998  665  554  4789999999999999999


Q ss_pred             HHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCC
Q 037504          113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSS  191 (396)
Q Consensus       113 ~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~  191 (396)
                      +|+++|++   ++.+|..|+||||+|+..|+.+++++|++.++ .+..+..|+            .||||+|+..+    
T Consensus        79 lLL~~Gad---vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~------------~TpL~~Aa~~g----  139 (284)
T PHA02791         79 ILLFSGMD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW------------KTSFYHAVMLN----  139 (284)
T ss_pred             HHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCC------------cHHHHHHHHcC----
Confidence            99999999   56677899999999999999999999999998 444555441            48999999988    


Q ss_pred             CCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCccccccc-CCCCcHHHHHHHcCcHHHHHHHHhhccccccc
Q 037504          192 NQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD-ENGHTIFHIAVSNRMREIFKFIFEISSVADLL  270 (396)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~  270 (396)
                                             ..+++++|++.    .+..   .| ..|.||||+|+++|+.+++++|+++|++    
T Consensus       140 -----------------------~~eivk~LL~~----~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd----  185 (284)
T PHA02791        140 -----------------------DVSIVSYFLSE----IPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTS----  185 (284)
T ss_pred             -----------------------CHHHHHHHHhc----CCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCCC----
Confidence                                   36777777653    2222   23 3589999999999999999999999999    


Q ss_pred             cccccCCCCch-hhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHH
Q 037504          271 FDSKDKDGNNI-LHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFI  338 (396)
Q Consensus       271 ~n~~d~~g~Tp-Lh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~  338 (396)
                      +|.+|..|.|| ||+|+..|+.+++++|                   +.+|++++.+|..| ||++.+.
T Consensus       186 ~n~~d~~g~t~~L~~Aa~~~~~e~v~lL-------------------l~~Ga~in~~~~~~-~~l~~~e  234 (284)
T PHA02791        186 TNTNNSLLFIPDIKLAIDNKDLEMLQAL-------------------FKYDINIYSVNLEN-VLLDDAE  234 (284)
T ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHH-------------------HHCCCCCccCcccC-ccCCCHH
Confidence            88999999987 9999999999999988                   88999999999955 9997764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=298.55  Aligned_cols=269  Identities=22%  Similarity=0.255  Sum_probs=174.6

Q ss_pred             cccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcc
Q 037504            7 LELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN   85 (396)
Q Consensus         7 ~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~   85 (396)
                      ++.++..++... .+.++.+|+|+|+..|+.++++.|++. ++++|.. |..|.||||+||..++.|..+.|++.|  ++
T Consensus       104 i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~-de~~~TpLh~A~~~~~~E~~k~Li~~~--a~  179 (929)
T KOG0510|consen  104 IQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLE-DENGFTPLHLAARKNKVEAKKELINKG--AD  179 (929)
T ss_pred             HHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHh-cCCcccc-ccCCCchhhHHHhcChHHHHHHHHhcC--CC
Confidence            444454444333 345555666666666666666555553 4555555 555666666666666666555555555  44


Q ss_pred             cchhcccCCCCcHHHHHHHcCCHHHHHHHHh-----cCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc--cC-
Q 037504           86 LDLAKRNRIGCTALFYAAASGSVELVKATME-----GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK--NS-  157 (396)
Q Consensus        86 ~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~--~~-  157 (396)
                      +  -..|.+|++|+|.|+++|..++++..+.     ++..   ++-.+..+.||||.|+..|+.++++..|+.++  .. 
T Consensus       180 ~--~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~---in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~  254 (929)
T KOG0510|consen  180 P--CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH---INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADV  254 (929)
T ss_pred             C--CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc---cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchh
Confidence            3  4455555555555555555555555554     3333   22223345555555555555555555554443  00 


Q ss_pred             -------------CCCcchhHHHHHHhhccc--------------------hhhHHHHHHhcCCCCCCCCCcchhhhhhh
Q 037504          158 -------------LKDDDCIELLVKLIETDS--------------------YETALHVLARKNLTSSNQNPRGIFQRYFN  204 (396)
Q Consensus       158 -------------~~~~~g~~~l~~~~~~~~--------------------~~t~L~~a~~~~~~~~~~~~~~~~~~~~~  204 (396)
                                   ..|.+|.+|||++...+.                    +.||||.|++.|                 
T Consensus       255 ~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg-----------------  317 (929)
T KOG0510|consen  255 QLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYG-----------------  317 (929)
T ss_pred             hhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcc-----------------
Confidence                         123444444444443322                    189999999988                 


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccc--cccCCCCchh
Q 037504          205 LGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD--SKDKDGNNIL  282 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n--~~d~~g~TpL  282 (396)
                                ..+.++.+++   .......|..|-.|+||||.|++.|+..++++|++.|++.   .+  ..|.+|+|||
T Consensus       318 ----------~~ntv~rLL~---~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~---~~~~e~D~dg~TaL  381 (929)
T KOG0510|consen  318 ----------RINTVERLLQ---ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF---LNMSEADSDGNTAL  381 (929)
T ss_pred             ----------cHHHHHHHHh---CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh---hcccccccCCchhh
Confidence                      4666666665   2566678899999999999999999999999999999983   22  5699999999


Q ss_pred             hhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhh
Q 037504          283 HLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDL  336 (396)
Q Consensus       283 h~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~  336 (396)
                      |+|+..|+..++++|                   +.+|+++..+|+.|+|++++
T Consensus       382 H~Aa~~g~~~av~~L-------------------i~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  382 HLAAKYGNTSAVQKL-------------------ISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hHHHHhccHHHHHHH-------------------HHcCCceeeccccccccccc
Confidence            999999999888887                   78999999999999999984

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-37  Score=304.05  Aligned_cols=276  Identities=13%  Similarity=0.077  Sum_probs=194.1

Q ss_pred             CCCccccccccCCCcc-cccccchHHHHHHHcCC--HHHHHHHHHhCccccccccCCCCchHHHHH--------------
Q 037504            3 HSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGD--WARAKVIYDEHKDEIGDVITRLGDTALHVA--------------   65 (396)
Q Consensus         3 h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A--------------   65 (396)
                      +.+++++|+..+++.. ++..|.||||+|+..|+  .++|+.||+. |++++.+ |..|+||||+|              
T Consensus       191 ~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~k-D~~G~TPLh~Ai~~a~n~~~EIvki  268 (764)
T PHA02716        191 DIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMK-CVNGMSPIMTYIINIDNINPEITNI  268 (764)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHhhhccCHHHHHH
Confidence            4468899998887665 67889999999999995  4899999975 9999998 99999999975              


Q ss_pred             -----------------------HHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH--cCCHHHHHHHHhcCCC
Q 037504           66 -----------------------AAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA--SGSVELVKATMEGNED  120 (396)
Q Consensus        66 -----------------------~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~g~~  120 (396)
                                             +..|+.+++++|++.|  +++  +.+|..|+||||+|+.  .++.+++++|+++|++
T Consensus       269 Lie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G--AdI--N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD  344 (764)
T PHA02716        269 YIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG--VKL--HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND  344 (764)
T ss_pred             HHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC--Cce--eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC
Confidence                                   3457888999999988  776  9999999999999864  4689999999999999


Q ss_pred             CccccCCCCCCCcHHHHHHh--------------cCCHHHHHHHHhhcc-cCCCCcchhHHHHHHh--hcc-chhhHHHH
Q 037504          121 ITMVPQDDKDRMLPIVGAAS--------------LGHTEVVEFLYRETK-NSLKDDDCIELLVKLI--ETD-SYETALHV  182 (396)
Q Consensus       121 ~~~~~~~d~~g~tpLh~A~~--------------~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~--~~~-~~~t~L~~  182 (396)
                         ++.+|..|+||||+|+.              .++.+++++|++.|+ .+..+..|+|||+.+.  ... .....+.+
T Consensus       345 ---IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvkl  421 (764)
T PHA02716        345 ---LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDC  421 (764)
T ss_pred             ---CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHH
Confidence               66678899999999875              368999999999999 6677888855554211  100 00111111


Q ss_pred             HHhcCCCCCCCCCcchhhhhhhccchh-hhhHH----------------------HHHHHHHHHHHHHHhCCcccccccC
Q 037504          183 LARKNLTSSNQNPRGIFQRYFNLGAKA-VENER----------------------ALELVELLWENFLFKYPDLIWKFDE  239 (396)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------------~~~~~~~ll~~ll~~~~~~i~~~d~  239 (396)
                      ....+........ .....+.+.+... ..+..                      ..+++..     +......++..|.
T Consensus       422 Lis~~~~~~~~~~-~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~ii~~~nvN~~D~  495 (764)
T PHA02716        422 LISDKVLNMVKHR-ILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHC-----AIIERYNNAVCET  495 (764)
T ss_pred             HHhCcchhhhhhh-hhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHH-----HHHhhccccccCC
Confidence            1111100000000 0000000000000 00000                      0011111     1112345788899


Q ss_pred             CCCcHHHHHHHcCcH-----HHHHHHHhhccccccccccccCCCCchhhhhhcCCCC-----Cccccc
Q 037504          240 NGHTIFHIAVSNRMR-----EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPL-----NRLNIV  297 (396)
Q Consensus       240 ~g~t~Lh~A~~~~~~-----~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~-----~~~~~l  297 (396)
                      .|+||||+|+..|+.     +++++|++.|++    +|.+|++|+||||+|+++|+.     +++++|
T Consensus       496 ~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD----IN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~L  559 (764)
T PHA02716        496 SGMTPLHVSIISHTNANIVMDSFVYLLSIQYN----INIPTKNGVTPLMLTMRNNRLSGHQWYIVKNI  559 (764)
T ss_pred             CCCCHHHHHHHcCCccchhHHHHHHHHhCCCC----CcccCCCCCCHHHHHHHcCCccccHHHHHHHH
Confidence            999999999999876     456999999999    899999999999999999987     666666

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-37  Score=303.88  Aligned_cols=299  Identities=15%  Similarity=0.081  Sum_probs=209.2

Q ss_pred             ccCCCcccccccchHHHHHHHc---CCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCC------------------
Q 037504           12 YSNPPVEEIRTRRLKLYRVALN---GDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANR------------------   70 (396)
Q Consensus        12 ~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~------------------   70 (396)
                      ...++..+|.+|+||||+|+..   |+.++|+.||+. |++++.+ +..|+||||+|+..|+                  
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~-~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~   98 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHK-NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS   98 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCcccc-CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC
Confidence            3334444588899999987555   779999999874 8888877 8889999998887665                  


Q ss_pred             -----------------HHHHHHHHHHhhhcccchhcccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCC
Q 037504           71 -----------------IDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA--ASGSVELVKATMEGNEDITMVPQDDKDR  131 (396)
Q Consensus        71 -----------------~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~g~~~~~~~~~d~~g  131 (396)
                                       .++|++|++.|  +++  +.+|..|+||||+|+  ..|+.+++++|+++|++++..+..+..|
T Consensus        99 n~~~~~~~~~~a~~~~~~e~vk~Ll~~G--adi--n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g  174 (661)
T PHA02917         99 NINDFNIFSYMKSKNVDVDLIKVLVEHG--FDL--SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYG  174 (661)
T ss_pred             CCCCcchHHHHHhhcCCHHHHHHHHHcC--CCC--CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccc
Confidence                             34455555555  554  888888999998543  4678999999999998865333333334


Q ss_pred             -----------CcHHHHHHh-----------cCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccc-------------
Q 037504          132 -----------MLPIVGAAS-----------LGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDS-------------  175 (396)
Q Consensus       132 -----------~tpLh~A~~-----------~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~-------------  175 (396)
                                 .||||+|+.           +++.+++++|++.|+ .+..+.+|.+|||.+...+.             
T Consensus       175 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        175 YAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             cccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence                       489998875           457889999998888 66777888888887775443             


Q ss_pred             ------------hhhHHHHHHhcCCCCCC--CCCcchhhhhhhccchhh---------------------h-------h-
Q 037504          176 ------------YETALHVLARKNLTSSN--QNPRGIFQRYFNLGAKAV---------------------E-------N-  212 (396)
Q Consensus       176 ------------~~t~L~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------~-------~-  212 (396)
                                  +.+|+++|+..++....  ....++++.+.+.|....                     .       + 
T Consensus       255 d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (661)
T PHA02917        255 DNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHI  334 (661)
T ss_pred             cccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHH
Confidence                        13556666532211000  011223333333332100                     0       0 


Q ss_pred             ------H--HHHHHHHHHHH-------------------------HHHHhCCcccccccCCCCcHHHHHHHcC-------
Q 037504          213 ------E--RALELVELLWE-------------------------NFLFKYPDLIWKFDENGHTIFHIAVSNR-------  252 (396)
Q Consensus       213 ------~--~~~~~~~~ll~-------------------------~ll~~~~~~i~~~d~~g~t~Lh~A~~~~-------  252 (396)
                            .  ...++++.|++                         .++...+++++..+.+|+||||.|++.+       
T Consensus       335 l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~  414 (661)
T PHA02917        335 LIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY  414 (661)
T ss_pred             HHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh
Confidence                  0  01224444333                         3445567766777778999999997543       


Q ss_pred             ----------------cHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhh
Q 037504          253 ----------------MREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKK  316 (396)
Q Consensus       253 ----------------~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~  316 (396)
                                      ..+++++|+++|++    +|.+|..|+||||+|+..++.+++++|                   
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd----IN~kd~~G~TpLh~Aa~~~~~~~v~~L-------------------  471 (661)
T PHA02917        415 TYTYKKGLCDMSYACPILSTINICLPYLKD----INMIDKRGETLLHKAVRYNKQSLVSLL-------------------  471 (661)
T ss_pred             hhhhhhccchhhhhhhhHHHHHHHHHCCCC----CCCCCCCCcCHHHHHHHcCCHHHHHHH-------------------
Confidence                            35678999999999    899999999999999999998888777                   


Q ss_pred             hcchhhhhhhcCCCCCchhhHHH
Q 037504          317 VVPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       317 l~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                      +..|++++.+|..|.|||++|..
T Consensus       472 l~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        472 LESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHH
Confidence            77999999999999999999985

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.8e-38  Score=302.90  Aligned_cols=246  Identities=20%  Similarity=0.234  Sum_probs=218.1

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHH-----HHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHH--HcCCHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYR-----VALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAA--AANRIDF   73 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~-----A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~   73 (396)
                      +|.+++++++..+.+.. .+..|.||||+     |+..|+.++++.|++. |++++.. +..|.||||+|+  ..|+.++
T Consensus        46 ~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~-d~~g~tpL~~A~~~~~~~~~i  123 (480)
T PHA03100         46 RNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAP-DNNGITPLLYAISKKSNSYSI  123 (480)
T ss_pred             CCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCC-CCCCCchhhHHHhcccChHHH
Confidence            56778999998876554 56778999999     9999999999999985 8999877 999999999999  9999999


Q ss_pred             HHHHHHHhhhcccchhcccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 037504           74 VKKLVKKMKAENLDLAKRNRIGCTALFYAAASG--SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY  151 (396)
Q Consensus        74 v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll  151 (396)
                      +++|++.|  +++  +.+|..|.||||+|+..|  +.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+
T Consensus       124 v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d---in~~d~~g~tpL~~A~~~~~~~iv~~Ll  196 (480)
T PHA03100        124 VEYLLDNG--ANV--NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD---INAKNRYGYTPLHIAVEKGNIDVIKFLL  196 (480)
T ss_pred             HHHHHHcC--CCC--CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC---cccccCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999998  776  899999999999999999  99999999999999   5566779999999999999999999999


Q ss_pred             hhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhC
Q 037504          152 RETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKY  230 (396)
Q Consensus       152 ~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~  230 (396)
                      +.|+ ....+..|.++++.       .||||+|+..++.                         ..++++.+++     .
T Consensus       197 ~~ga~~~~~~~~~~~~~~~-------~t~l~~a~~~~~~-------------------------~~~iv~~Ll~-----~  239 (480)
T PHA03100        197 DNGADINAGDIETLLFTIF-------ETPLHIAACYNEI-------------------------TLEVVNYLLS-----Y  239 (480)
T ss_pred             HcCCCccCCCCCCCcHHHH-------HhHHHHHHHhCcC-------------------------cHHHHHHHHH-----c
Confidence            9998 55555666555554       7999999998821                         1566766654     5


Q ss_pred             CcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       231 ~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      +.+++.+|..|.||||+|+..|+.+++++|+++|++    +|.+|..|.||||+|+..++.+++++|
T Consensus       240 g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad----~n~~d~~g~tpl~~A~~~~~~~iv~~L  302 (480)
T PHA03100        240 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN----PNLVNKYGDTPLHIAILNNNKEIFKLL  302 (480)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCcHHHHHHHhCCHHHHHHH
Confidence            788999999999999999999999999999999998    889999999999999999999999888

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.4e-37  Score=290.53  Aligned_cols=218  Identities=17%  Similarity=0.141  Sum_probs=183.5

Q ss_pred             cchHHHHHHH--cCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           23 RRLKLYRVAL--NGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        23 g~t~Lh~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      +.++||.++.  .++.++|+.|++. |++++.+ |..|.||||+|+..|+.++|++|+++|  +++  +.+|..|+||||
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~-d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adi--n~~d~~g~TpLh  110 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHR-GYSPNET-DDDGNYPLHIASKINNNRIVAMLLTHG--ADP--NACDKQHKTPLY  110 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHC-cCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCc--CCC--CCCCCCCCCHHH
Confidence            4689998764  4467899999975 9999998 999999999999999999999999998  777  999999999999


Q ss_pred             HHHHcC--CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchh
Q 037504          101 YAAASG--SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYE  177 (396)
Q Consensus       101 ~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~  177 (396)
                      +|+..+  ..+++++|+++|++++.  ..|..|.|||| |+..++.+++++|++.++ .+..+..|             +
T Consensus       111 ~A~~~~~~~~e~v~lLl~~Gadin~--~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G-------------~  174 (446)
T PHA02946        111 YLSGTDDEVIERINLLVQYGAKINN--SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFG-------------K  174 (446)
T ss_pred             HHHHcCCchHHHHHHHHHcCCCccc--ccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCC-------------C
Confidence            998866  48999999999999532  34668999998 666799999999999998 66677777             8


Q ss_pred             hHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcC--cHH
Q 037504          178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNR--MRE  255 (396)
Q Consensus       178 t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~--~~~  255 (396)
                      ||||+|+..++.                         ..++++.++     ..+.+++.+|.+|+||||+|+..+  +.+
T Consensus       175 t~Lh~A~~~~~~-------------------------~~~~v~~Ll-----~~Gadin~~d~~G~TpLH~Aa~~~~~~~~  224 (446)
T PHA02946        175 NHIHRHLMSDNP-------------------------KASTISWMM-----KLGISPSKPDHDGNTPLHIVCSKTVKNVD  224 (446)
T ss_pred             CHHHHHHHhcCC-------------------------CHHHHHHHH-----HcCCCCcccCCCCCCHHHHHHHcCCCcHH
Confidence            999998875521                         234555544     468899999999999999999986  789


Q ss_pred             HHHHHHhhccccccccccccCCCCchhhhhhcCCCC-Cccccc
Q 037504          256 IFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPL-NRLNIV  297 (396)
Q Consensus       256 ~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~-~~~~~l  297 (396)
                      ++++|+. |++    +|.+|..|+||||+|++.++. +++++|
T Consensus       225 iv~lLl~-gad----in~~d~~G~TpLh~A~~~~~~~~~~~~L  262 (446)
T PHA02946        225 IINLLLP-STD----VNKQNKFGDSPLTLLIKTLSPAHLINKL  262 (446)
T ss_pred             HHHHHHc-CCC----CCCCCCCCCCHHHHHHHhCChHHHHHHH
Confidence            9999985 888    899999999999999999874 555544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-37  Score=291.35  Aligned_cols=281  Identities=20%  Similarity=0.213  Sum_probs=206.6

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCC
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGC   96 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~   96 (396)
                      ...|..|++|||.|+.....+.++.|++. |++.+.. +.++.+|||+|+..|+.+.++.|++++  .++  |..|..|.
T Consensus        82 ~a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~-n~~~~aplh~A~~~~~~s~L~~Ll~~~--~dv--nl~de~~~  155 (929)
T KOG0510|consen   82 YAKDSADNTPLHAAVEYNQGDKIQVLLSY-GADTPLR-NLNKNAPLHLAADSGNYSCLKLLLDYG--ADV--NLEDENGF  155 (929)
T ss_pred             hhhhcccCchhHHHhhcchHHHHHHHHhc-CCCCChh-hhhccCchhhccccchHHHHHHHHHhc--CCc--cccccCCC
Confidence            34688899999999999999999999986 9999888 999999999999999999999999998  666  99999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhh-----cc-cCCCCcchhHHHHHH
Q 037504           97 TALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE-----TK-NSLKDDDCIELLVKL  170 (396)
Q Consensus        97 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-----~~-~~~~~~~g~~~l~~~  170 (396)
                      ||||.||..++.|..+.|++.|++   +...|.+|.+|+|.|+..|..++.+..+..     .. .+..+..+       
T Consensus       156 TpLh~A~~~~~~E~~k~Li~~~a~---~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~-------  225 (929)
T KOG0510|consen  156 TPLHLAARKNKVEAKKELINKGAD---PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEK-------  225 (929)
T ss_pred             chhhHHHhcChHHHHHHHHhcCCC---CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCC-------
Confidence            999999999999988999999999   667788999999999999999999999982     22 44556666       


Q ss_pred             hhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH-HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHH
Q 037504          171 IETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE-RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAV  249 (396)
Q Consensus       171 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~  249 (396)
                            .+|||.|+..|+.       ...+...+.++...... ......+           ..+|..|++|.||||+|+
T Consensus       226 ------~~pLhlAve~g~~-------e~lk~~L~n~~~~a~~~~~~~~q~k-----------elv~~~d~dg~tpLH~a~  281 (929)
T KOG0510|consen  226 ------ATPLHLAVEGGDI-------EMLKMCLQNGKKIADVQLDAMQQEK-----------ELVNDEDNDGCTPLHYAA  281 (929)
T ss_pred             ------CcchhhhhhcCCH-------HHHHHHHhCccccchhhhHHHHHHH-----------HHhhcccccCCchHHHHH
Confidence                  5666666666632       23333333322211110 0011111           124556666777777777


Q ss_pred             HcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccc---------------hhHhHHHHHHHHHHH
Q 037504          250 SNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSV---------------AALQLQRELLWFQEV  314 (396)
Q Consensus       250 ~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~---------------~~~~~~~~l~~~~~v  314 (396)
                      +.|++++++.|+..|++    ++.+++++.||||.||.+|+...++-|..               +++++++.-++.+.+
T Consensus       282 r~G~~~svd~Ll~~Ga~----I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~  357 (929)
T KOG0510|consen  282 RQGGPESVDNLLGFGAS----INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVV  357 (929)
T ss_pred             HcCChhHHHHHHHcCCc----ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHH
Confidence            77777777777776666    66666667777777776666655554321               445555555555555


Q ss_pred             hhhc-chhhhh---hhcCCCCCchhhHHHHh
Q 037504          315 KKVV-PRKFAE---EKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       315 ~~l~-~~~~~~---~~~~~g~tpl~~a~~~~  341 (396)
                      +.|+ .|++..   ..|.+|.||||+|...+
T Consensus       358 qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  358 QLLLNKGALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             HHHHhcChhhhcccccccCCchhhhHHHHhc
Confidence            5555 567665   55999999999998754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=279.69  Aligned_cols=211  Identities=24%  Similarity=0.317  Sum_probs=179.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc-CCCCcHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN-RIGCTALF  100 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d-~~g~tpLh  100 (396)
                      .....++.|++.|+++.|+.+++..+.+++.. |.+|-|+||.||.+++.+++++|+++|  +++  |..+ .-+.||||
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~g--adv--n~~gG~l~stPLH  117 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRLDVARYLISHG--ADV--NAIGGVLGSTPLH  117 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcHHHHHHHHHcC--CCc--cccCCCCCCCcch
Confidence            34678899999999999999999878899888 889999999999999999999999999  777  7777 67899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHH
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETAL  180 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L  180 (396)
                      ||+++|+..+|++|+++|+|   +..+|.+|.||||+|++.|+.-.+-+|+..++                         
T Consensus       118 WAar~G~~~vv~lLlqhGAd---pt~~D~~G~~~lHla~~~~~~~~vayll~~~~-------------------------  169 (600)
T KOG0509|consen  118 WAARNGHISVVDLLLQHGAD---PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA-------------------------  169 (600)
T ss_pred             HHHHcCcHHHHHHHHHcCCC---CceecCCCCcHHHHHHHhCchHHHHHHHHhcc-------------------------
Confidence            99999999999999999999   55667799999999999999999998887653                         


Q ss_pred             HHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHH
Q 037504          181 HVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFI  260 (396)
Q Consensus       181 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~L  260 (396)
                                                                          +++.+|.+|+||||+|+.+|....++.|
T Consensus       170 ----------------------------------------------------d~d~~D~~grTpLmwAaykg~~~~v~~L  197 (600)
T KOG0509|consen  170 ----------------------------------------------------DIDLRDNNGRTPLMWAAYKGFALFVRRL  197 (600)
T ss_pred             ----------------------------------------------------cCCCcCCCCCCHHHHHHHhcccHHHHHH
Confidence                                                                4667788888888888888877768888


Q ss_pred             Hhhcccccccccccc-CCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHH
Q 037504          261 FEISSVADLLFDSKD-KDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       261 l~~g~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                      ++.|+.    ++.+| .+|+||||+|+..|+.+++.++                   +..+++.+.+|.+|+||+++|.+
T Consensus       198 L~f~a~----~~~~d~~~g~TpLHwa~~~gN~~~v~Ll-------------------~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  198 LKFGAS----LLLTDDNHGNTPLHWAVVGGNLTAVKLL-------------------LEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             HHhccc----ccccccccCCchHHHHHhcCCcceEehh-------------------hhcCCcccccccCCCCHHHHHHH
Confidence            888887    66666 7888888888888888887743                   33457778888888888888865


Q ss_pred             H
Q 037504          340 E  340 (396)
Q Consensus       340 ~  340 (396)
                      .
T Consensus       255 ~  255 (600)
T KOG0509|consen  255 R  255 (600)
T ss_pred             h
Confidence            5

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=293.41  Aligned_cols=240  Identities=18%  Similarity=0.131  Sum_probs=208.2

Q ss_pred             CCCccccccccCCCcc-cccccchHHHHHHHcC-CHHHHHHHHHhCccccccccCCCCchHHHHHH--HcCCHHHHHHHH
Q 037504            3 HSAPLELHVYSNPPVE-EIRTRRLKLYRVALNG-DWARAKVIYDEHKDEIGDVITRLGDTALHVAA--AANRIDFVKKLV   78 (396)
Q Consensus         3 h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll   78 (396)
                      +.+++++++..+++.. .+..|.||||+|+..| ..++++.|++. |++++.+ +..|.||||+|+  ..++.+++++|+
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga~in~~-~~~g~tpLh~a~~~~~~~~~iv~~Ll  139 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA-GADVNAK-DKVGRTPLHVYLSGFNINPKVIRLLL  139 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHhhCCcCCHHHHHHHH
Confidence            5677888998887666 5778999999999999 59999988875 9999998 999999999999  567899999999


Q ss_pred             HHhhhcccchhcccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc--CCHHHHHHHHhhc
Q 037504           79 KKMKAENLDLAKRNRIGCTALFYAAASG--SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL--GHTEVVEFLYRET  154 (396)
Q Consensus        79 ~~~~~~~~d~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~~  154 (396)
                      +.|  +++  +.+|..|.||||+|+..+  +.+++++|+++|+++.   ..|..|.||||+++..  ++.+++++|++.|
T Consensus       140 ~~g--ad~--~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~---~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g  212 (471)
T PHA03095        140 RKG--ADV--NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY---AVDDRFRSLLHHHLQSFKPRARIVRELIRAG  212 (471)
T ss_pred             HcC--CCC--CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC
Confidence            998  776  999999999999998866  6899999999999954   4477999999999875  7789999999999


Q ss_pred             c-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcc
Q 037504          155 K-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDL  233 (396)
Q Consensus       155 ~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~  233 (396)
                      + .+..+..|             .||||+|+..++.                         ...+++.+     ...+.+
T Consensus       213 ~~~~~~d~~g-------------~tpLh~Aa~~~~~-------------------------~~~~v~~l-----l~~g~d  249 (471)
T PHA03095        213 CDPAATDMLG-------------NTPLHSMATGSSC-------------------------KRSLVLPL-----LIAGIS  249 (471)
T ss_pred             CCCcccCCCC-------------CCHHHHHHhcCCc-------------------------hHHHHHHH-----HHcCCC
Confidence            8 66677777             8999999998721                         11233333     346888


Q ss_pred             cccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccccc
Q 037504          234 IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVS  298 (396)
Q Consensus       234 i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~  298 (396)
                      +|.+|..|+||||+|+..|+.+++++|+++|++    +|.+|..|+||||+|+..|+.+++..|.
T Consensus       250 in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad----~n~~~~~g~tpl~~A~~~~~~~~v~~LL  310 (471)
T PHA03095        250 INARNRYGQTPLHYAAVFNNPRACRRLIALGAD----INAVSSDGNTPLSLMVRNNNGRAVRAAL  310 (471)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999    8899999999999999999999998874

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-36  Score=290.70  Aligned_cols=264  Identities=14%  Similarity=0.104  Sum_probs=205.8

Q ss_pred             CCccccccccCCCcccccccchHHHHHHHcC--CHHHHHHHHHhCccccccccCCCCchHHHHHHHcC------CHHHHH
Q 037504            4 SAPLELHVYSNPPVEEIRTRRLKLYRVALNG--DWARAKVIYDEHKDEIGDVITRLGDTALHVAAAAN------RIDFVK   75 (396)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~~v~   75 (396)
                      .+++++|+..+++......|.||||.++..+  +.++|+.||+. |+++|.+ + .+.||||.|+..+      +.++++
T Consensus        16 ~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~~iv~   92 (494)
T PHA02989         16 KNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYK-G-YIETPLCAVLRNREITSNKIKKIVK   92 (494)
T ss_pred             HHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCC-C-CCCCcHHHHHhccCcchhhHHHHHH
Confidence            3567888888876665467999998766554  68999999985 9999987 4 6799999998754      578999


Q ss_pred             HHHHHhhhcccchhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc--CCHHHHHHH
Q 037504           76 KLVKKMKAENLDLAKRNRIGCTALFYAAAS---GSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL--GHTEVVEFL  150 (396)
Q Consensus        76 ~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~--~~~~~v~~L  150 (396)
                      +|++.|  +++  +.+|..|.||||.|+..   |+.+++++|+++|++++  +.+|..|+||||+|+..  ++.+++++|
T Consensus        93 ~Ll~~G--adi--n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin--~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         93 LLLKFG--ADI--NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN--DVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHCC--CCC--CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc--cccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            999999  777  99999999999988765   68999999999999942  45677999999998764  689999999


Q ss_pred             Hhhcc-cCC-CCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 037504          151 YRETK-NSL-KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLF  228 (396)
Q Consensus       151 l~~~~-~~~-~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  228 (396)
                      ++.|+ ... .+..|             .||||+|++.+..                       ....++++.|++    
T Consensus       167 l~~Gadi~~~~~~~g-------------~tpL~~a~~~~~~-----------------------~~~~~iv~~Ll~----  206 (494)
T PHA02989        167 LSFGVNLFEKTSLYG-------------LTPMNIYLRNDID-----------------------VISIKVIKYLIK----  206 (494)
T ss_pred             HHcCCCccccccccC-------------CChHHHHHhcccc-----------------------cccHHHHHHHHh----
Confidence            99998 332 34455             7899988775411                       113566666553    


Q ss_pred             hCCcccccccCCCCcHHHHHHHcC------cHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhH
Q 037504          229 KYPDLIWKFDENGHTIFHIAVSNR------MREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAAL  302 (396)
Q Consensus       229 ~~~~~i~~~d~~g~t~Lh~A~~~~------~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~  302 (396)
                       .|.+++.+|..|.||||.++..+      ..+++++|+. |++    +|.+|..|+||||+|+..++.+++++|     
T Consensus       207 -~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad----vn~~d~~G~TpL~~Aa~~~~~~~v~~L-----  275 (494)
T PHA02989        207 -KGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK----INKKDKKGFNPLLISAKVDNYEAFNYL-----  275 (494)
T ss_pred             -CCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC----CCCCCCCCCCHHHHHHHhcCHHHHHHH-----
Confidence             57778888888888888776543      4567776654 577    788888888888888888888877776     


Q ss_pred             hHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          303 QLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       303 ~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                                    +..|++++.+|..|+|||++|.+..
T Consensus       276 --------------L~~Gadin~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        276 --------------LKLGDDIYNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             --------------HHcCCCccccCCCCCCHHHHHHHcC
Confidence                          6678888888888888888887643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-35  Score=282.64  Aligned_cols=245  Identities=16%  Similarity=0.151  Sum_probs=199.5

Q ss_pred             CCCccccccccCCCcccccccchHHHHHHHcC------CHHHHHHHHHhCccccccccCCCCchHHHHHHHc---CCHHH
Q 037504            3 HSAPLELHVYSNPPVEEIRTRRLKLYRVALNG------DWARAKVIYDEHKDEIGDVITRLGDTALHVAAAA---NRIDF   73 (396)
Q Consensus         3 h~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~   73 (396)
                      |.+++++|+..+++......+.||||.|+..+      ..++++.|++. |++++.+ |..|.||||.|+..   |+.++
T Consensus        49 ~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~-d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         49 KIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKF-GADINLK-TFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             ChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHhcccCcHHH
Confidence            56889999999988775556899999998765      46789988875 9999998 99999999988765   68999


Q ss_pred             HHHHHHHhhhcccchhcccCCCCcHHHHHHHc--CCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcC----CHHHH
Q 037504           74 VKKLVKKMKAENLDLAKRNRIGCTALFYAAAS--GSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLG----HTEVV  147 (396)
Q Consensus        74 v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~----~~~~v  147 (396)
                      +++|+++|  ++++ +.+|..|+||||+|+..  ++.+++++|+++|++++..  .+..|.||||+|+..+    +.+++
T Consensus       127 v~~Ll~~G--adin-~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~--~~~~g~tpL~~a~~~~~~~~~~~iv  201 (494)
T PHA02989        127 LRFLLSKG--INVN-DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK--TSLYGLTPMNIYLRNDIDVISIKVI  201 (494)
T ss_pred             HHHHHHCC--CCcc-cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc--ccccCCChHHHHHhcccccccHHHH
Confidence            99999998  5540 57899999999998764  6899999999999995432  4568999999998764    89999


Q ss_pred             HHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHH
Q 037504          148 EFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENF  226 (396)
Q Consensus       148 ~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  226 (396)
                      ++|++.|+ .+..+..+             .+|||.++..+...                     .....+++++++   
T Consensus       202 ~~Ll~~Ga~vn~~~~~~-------------~t~l~~~~~~~~~~---------------------~~~~~~il~~l~---  244 (494)
T PHA02989        202 KYLIKKGVNIETNNNGS-------------ESVLESFLDNNKIL---------------------SKKEFKVLNFIL---  244 (494)
T ss_pred             HHHHhCCCCccccCCcc-------------ccHHHHHHHhchhh---------------------cccchHHHHHHH---
Confidence            99999998 44455455             67777766543110                     011234444332   


Q ss_pred             HHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccccc
Q 037504          227 LFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVS  298 (396)
Q Consensus       227 l~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~  298 (396)
                         .+.++|.+|..|+||||+|+..|+.+++++|+++|++    +|.+|..|+||||+|+..++.++++.|.
T Consensus       245 ---~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad----in~~d~~G~TpL~~A~~~~~~~iv~~LL  309 (494)
T PHA02989        245 ---KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD----IYNVSKDGDTVLTYAIKHGNIDMLNRIL  309 (494)
T ss_pred             ---hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence               2478999999999999999999999999999999999    8999999999999999999999888763

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=274.85  Aligned_cols=233  Identities=15%  Similarity=0.116  Sum_probs=200.7

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||.+++++|+..+++.. .+..|.||||+|+..|+.++++.|++. |++++.. +..+.||||+|+..|+.+++++|++.
T Consensus        13 g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~   90 (413)
T PHA02875         13 GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVK-YPDIESELHDAVEEGDVKAVEELLDL   90 (413)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccc-CCCcccHHHHHHHCCCHHHHHHHHHc
Confidence            67888999998876554 456899999999999999999999985 8888776 78899999999999999999999999


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCC
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLK  159 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~  159 (396)
                      |  ... .+..+..|.||||+|+..|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|++.++ .+..
T Consensus        91 ~--~~~-~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~  164 (413)
T PHA02875         91 G--KFA-DDVFYKDGMTPLHLATILKKLDIMKLLIARGAD---PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE  164 (413)
T ss_pred             C--Ccc-cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Confidence            8  443 245677899999999999999999999999999   45566789999999999999999999999998 5566


Q ss_pred             CcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC
Q 037504          160 DDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE  239 (396)
Q Consensus       160 ~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~  239 (396)
                      +..|             .||||+|+..|                           ..++++.+++     .+.+++..+.
T Consensus       165 d~~g-------------~TpL~~A~~~g---------------------------~~eiv~~Ll~-----~ga~~n~~~~  199 (413)
T PHA02875        165 DCCG-------------CTPLIIAMAKG---------------------------DIAICKMLLD-----SGANIDYFGK  199 (413)
T ss_pred             CCCC-------------CCHHHHHHHcC---------------------------CHHHHHHHHh-----CCCCCCcCCC
Confidence            7777             89999999988                           3677776654     5788888888


Q ss_pred             CC-CcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          240 NG-HTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       240 ~g-~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                      .| .||+|+|+..|+.+++++|+++|++.++ ++..+.+|.|||++++..
T Consensus       200 ~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~-~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        200 NGCVAALCYAIENNKIDIVRLFIKRGADCNI-MFMIEGEECTILDMICNM  248 (413)
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCcCcch-HhhcCCCchHHHHHHHhh
Confidence            77 5899999999999999999999999654 344578899999988654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-35  Score=282.72  Aligned_cols=271  Identities=17%  Similarity=0.178  Sum_probs=187.9

Q ss_pred             ccccccccCCCcccccccchHHHHHHH--cCCHHHHHHHHHhCccccccccCCCCchHHHHHHHc-----CCHHHHHHHH
Q 037504            6 PLELHVYSNPPVEEIRTRRLKLYRVAL--NGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAA-----NRIDFVKKLV   78 (396)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll   78 (396)
                      .+++++....+.+. ..|.|+++.+..  .++.++|+.|++. |++++.. |..|.||||.|+..     ++.+++++|+
T Consensus        20 ~v~~ll~~~~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll   96 (489)
T PHA02798         20 TVKLLIKSCNPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILI   96 (489)
T ss_pred             HHHHHHhcCChhhh-cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHHHHHH
Confidence            45566654433332 446676654443  3478888888874 8888887 88888888888764     6688888888


Q ss_pred             HHhhhcccchhcccCCCCcHHHHHHHcC---CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCC---HHHHHHHHh
Q 037504           79 KKMKAENLDLAKRNRIGCTALFYAAASG---SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH---TEVVEFLYR  152 (396)
Q Consensus        79 ~~~~~~~~d~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~---~~~v~~Ll~  152 (396)
                      +.|  +++  |.+|..|+||||+|+..+   +.+++++|+++|++   ++.+|..|.||||+|+..++   .+++++|++
T Consensus        97 ~~G--adi--N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         97 ENG--ADI--NKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD---TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HCC--CCC--CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC---ccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            887  766  888888888888888875   67888888888888   55667788888888888887   888888888


Q ss_pred             hcc-cCCC-CcchhHHHHHHhhcc---chhhHHHHHHhcCCCCCCCCCcchhh---hhhhccchhhhhHHHHHHHHHHHH
Q 037504          153 ETK-NSLK-DDDCIELLVKLIETD---SYETALHVLARKNLTSSNQNPRGIFQ---RYFNLGAKAVENERALELVELLWE  224 (396)
Q Consensus       153 ~~~-~~~~-~~~g~~~l~~~~~~~---~~~t~L~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~  224 (396)
                      .|+ .+.. +..|.+++|.+....   .....+.+...+|.........+...   .+.....  .......+++..+  
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~i~~~l--  245 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLY--DNKRFKKNILDFI--  245 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHh--hcccchHHHHHHH--
Confidence            887 3333 346778887665432   11234445555553211111110000   0000000  0000112233222  


Q ss_pred             HHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccccc
Q 037504          225 NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVS  298 (396)
Q Consensus       225 ~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~  298 (396)
                         .. +.++|.+|..|+||||+|+.+|+.+++++|+++|++    +|.+|..|+||||+|+..++.+++..|.
T Consensus       246 ---~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd----in~~d~~G~TpL~~A~~~~~~~iv~~lL  311 (489)
T PHA02798        246 ---FS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD----INIITELGNTCLFTAFENESKFIFNSIL  311 (489)
T ss_pred             ---Hh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc----ccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence               22 478999999999999999999999999999999999    8999999999999999999998888773

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-35  Score=283.33  Aligned_cols=250  Identities=16%  Similarity=0.138  Sum_probs=187.9

Q ss_pred             CHHHHHHHHHhCccccccccCCCCchHHHHHHH--cCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHc-----CC
Q 037504           35 DWARAKVIYDEHKDEIGDVITRLGDTALHVAAA--ANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAAS-----GS  107 (396)
Q Consensus        35 ~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~-----g~  107 (396)
                      ..+.|+.|++. + +++..  ..|.|+++.+..  .++.++|++|++.|  +++  +.+|..|.||||+|+..     ++
T Consensus        17 ~~~~v~~ll~~-~-~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~G--adv--n~~d~~g~TpL~~~~~n~~~~~~~   88 (489)
T PHA02798         17 KLSTVKLLIKS-C-NPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLG--ANV--NGLDNEYSTPLCTILSNIKDYKHM   88 (489)
T ss_pred             cHHHHHHHHhc-C-Chhhh--cccchHHHHHHhCCCCCHHHHHHHHHCC--CCC--CCCCCCCCChHHHHHHhHHhHHhH
Confidence            36789999964 3 34433  457787764443  45899999999999  777  99999999999999864     67


Q ss_pred             HHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcC---CHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHH
Q 037504          108 VELVKATMEGNEDITMVPQDDKDRMLPIVGAASLG---HTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVL  183 (396)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~---~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a  183 (396)
                      .+++++|+++|++   ++.+|..|.||||+|+..+   +.+++++|++.|+ .+..+.+|.             ||||+|
T Consensus        89 ~~iv~~Ll~~Gad---iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~-------------tpL~~a  152 (489)
T PHA02798         89 LDIVKILIENGAD---INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGF-------------TMLQVY  152 (489)
T ss_pred             HHHHHHHHHCCCC---CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCC-------------cHHHHH
Confidence            9999999999999   6667889999999999875   7899999999999 677888884             555555


Q ss_pred             HhcCCCCCCCCCcchhhhhhhccch----------hhhh--------HHHHHHHHHHHHHHHHhCCcccccccCCCCcHH
Q 037504          184 ARKNLTSSNQNPRGIFQRYFNLGAK----------AVEN--------ERALELVELLWENFLFKYPDLIWKFDENGHTIF  245 (396)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~L  245 (396)
                      ++.++.    ...+.++.+.+.+..          ++.|        ....+++++++     ..|..++..+..|.+++
T Consensus       153 ~~~~~~----~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li-----~~Ga~i~~~~~~~~~~~  223 (489)
T PHA02798        153 LQSNHH----IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFV-----DNGFIINKENKSHKKKF  223 (489)
T ss_pred             HHcCCc----chHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHH-----HCCCCcccCCccccchH
Confidence            544420    001122222221111          0001        11245666555     46788888888899987


Q ss_pred             H-------HHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhc
Q 037504          246 H-------IAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVV  318 (396)
Q Consensus       246 h-------~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~  318 (396)
                      +       ++...++.+++.+|+. +++    +|.+|..|+||||+|+..++.+++++|                   +.
T Consensus       224 ~~~l~~l~~~~~~~~~~i~~~l~~-~~d----vN~~d~~G~TPL~~A~~~~~~~~v~~L-------------------L~  279 (489)
T PHA02798        224 MEYLNSLLYDNKRFKKNILDFIFS-YID----INQVDELGFNPLYYSVSHNNRKIFEYL-------------------LQ  279 (489)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHh-cCC----CCCcCcCCccHHHHHHHcCcHHHHHHH-------------------HH
Confidence            7       2345567788888766 577    899999999999999999999988887                   77


Q ss_pred             chhhhhhhcCCCCCchhhHHHHh
Q 037504          319 PRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       319 ~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      .|++++.+|..|+|||++|.+..
T Consensus       280 ~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        280 LGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             cCCcccccCCCCCcHHHHHHHcC
Confidence            99999999999999999998754

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=277.63  Aligned_cols=235  Identities=17%  Similarity=0.118  Sum_probs=194.4

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHH-
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVK-   79 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-   79 (396)
                      ||.+++++|+..+++.. .+..|.||||+||..|+.+.++.|+.. +....   ...+.+||+.|+..|+.++++.|+. 
T Consensus        48 g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-~~~~~---~~~~~~~l~~a~~~~~~ei~~~Ll~~  123 (477)
T PHA02878         48 RNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCS---VFYTLVAIKDAFNNRNVEIFKIILTN  123 (477)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHH-Hhccc---cccchhhHHHHHHcCCHHHHHHHHhC
Confidence            67788999998886654 688899999999999999999999986 33222   2567899999999988776666554 


Q ss_pred             --------------------------------HhhhcccchhcccCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCccccC
Q 037504           80 --------------------------------KMKAENLDLAKRNRI-GCTALFYAAASGSVELVKATMEGNEDITMVPQ  126 (396)
Q Consensus        80 --------------------------------~~~~~~~d~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~  126 (396)
                                                      .|  +++  +.+|.. |.||||+|+..|+.+++++|+++|++   ++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g--adi--n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad---~n~  196 (477)
T PHA02878        124 RYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG--ADI--NMKDRHKGNTALHYATENKDQRLTELLLSYGAN---VNI  196 (477)
T ss_pred             cccCcccCcHHHHhhccchhhHHHHHHHHHHHcC--CCC--CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC---CCC
Confidence                                            33  444  888888 99999999999999999999999999   556


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhc
Q 037504          127 DDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNL  205 (396)
Q Consensus       127 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~  205 (396)
                      .|..|.||||+|+..|+.+++++|++.|+ .+..+..|             .||||+|+..+.                 
T Consensus       197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g-------------~TpLh~A~~~~~-----------------  246 (477)
T PHA02878        197 PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCG-------------NTPLHISVGYCK-----------------  246 (477)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC-------------CCHHHHHHHhcC-----------------
Confidence            67799999999999999999999999998 66677777             899999997531                 


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhCCcccccccC-CCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhh
Q 037504          206 GAKAVENERALELVELLWENFLFKYPDLIWKFDE-NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHL  284 (396)
Q Consensus       206 ~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~  284 (396)
                               ..++++.+++     .+.+++.++. .|+||||+|  .++.+++++|+++|++    +|.+|..|+||||+
T Consensus       247 ---------~~~iv~~Ll~-----~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad----in~~d~~g~TpL~~  306 (477)
T PHA02878        247 ---------DYDILKLLLE-----HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGAD----INSLNSYKLTPLSS  306 (477)
T ss_pred             ---------CHHHHHHHHH-----cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCC----CCCcCCCCCCHHHH
Confidence                     3566766654     5788888875 899999999  5678999999999999    89999999999999


Q ss_pred             hhcCC-CCCccccc
Q 037504          285 AGKLP-PLNRLNIV  297 (396)
Q Consensus       285 A~~~~-~~~~~~~l  297 (396)
                      |+..+ ..++.++|
T Consensus       307 A~~~~~~~~~~~~l  320 (477)
T PHA02878        307 AVKQYLCINIGRIL  320 (477)
T ss_pred             HHHHcCccchHHHH
Confidence            99754 34444443

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-34  Score=272.06  Aligned_cols=263  Identities=14%  Similarity=0.052  Sum_probs=181.2

Q ss_pred             CCcccccccchHHHHHHHcC---CHHHHHHHHHhCccccccccCCCCchHHHHHHHcC--CHHHHHHHHHHhhhcccchh
Q 037504           15 PPVEEIRTRRLKLYRVALNG---DWARAKVIYDEHKDEIGDVITRLGDTALHVAAAAN--RIDFVKKLVKKMKAENLDLA   89 (396)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~d~~   89 (396)
                      .+-.+|..|.||||+|+..|   +.++|+.||+ +|++++.+ |..|+||||+|+..+  +.|+|++|++.|  ++.+.+
T Consensus        33 in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~k-D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~--~~~~~~  108 (672)
T PHA02730         33 LSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCR-NNEGLTPLGVYSKRKYVKSQIVHLLISSY--SNASNE  108 (672)
T ss_pred             hhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCccc-CCCCCChHHHHHHcCCCcHHHHHHHHhcC--CCCCcc
Confidence            33457788999999999997   5999999996 59999998 999999999999977  799999999998  544447


Q ss_pred             cccCCCCcHHHHHHH--cCCHHHHHHHHh-cCCCCccccC-CC-CCCCcHHHHHHhcCCHHHHHHHHhhcc-cC------
Q 037504           90 KRNRIGCTALFYAAA--SGSVELVKATME-GNEDITMVPQ-DD-KDRMLPIVGAASLGHTEVVEFLYRETK-NS------  157 (396)
Q Consensus        90 ~~d~~g~tpLh~A~~--~g~~~~v~~Ll~-~g~~~~~~~~-~d-~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~------  157 (396)
                      ..+..+.+|||.++.  +++.+++++|++ .+.+++.... .+ ..|.+|++++...++.++|++|++.|+ +.      
T Consensus       109 ~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~  188 (672)
T PHA02730        109 LTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRS  188 (672)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccc
Confidence            788888899998888  889999999996 6667543322 11 268899999999999999999999998 31      


Q ss_pred             --CCCcchhHHHHHHh-h-------------------------ccchhhHHHHHHh--cCCCCCC---------------
Q 037504          158 --LKDDDCIELLVKLI-E-------------------------TDSYETALHVLAR--KNLTSSN---------------  192 (396)
Q Consensus       158 --~~~~~g~~~l~~~~-~-------------------------~~~~~t~L~~a~~--~~~~~~~---------------  192 (396)
                        ...+.+.+.|+..+ .                         +..|.||||++..  .++.+..               
T Consensus       189 ~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        189 CMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             ccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence              22233445555222 2                         1234899986332  2222000               


Q ss_pred             -----------------------CCCcchhhhhhhccchh------------hh-h--------HH----HHHHHHHH--
Q 037504          193 -----------------------QNPRGIFQRYFNLGAKA------------VE-N--------ER----ALELVELL--  222 (396)
Q Consensus       193 -----------------------~~~~~~~~~~~~~~~~~------------~~-~--------~~----~~~~~~~l--  222 (396)
                                             .....+++.+.+.+.+.            .. .        ..    ...+++.+  
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                   00011111122111110            00 0        00    00111111  


Q ss_pred             ------------HHHHHHhCCcccccccCCCCcHHHHHHHcCc----HHHHHHHHhhccccccccccccCCCCchhhh
Q 037504          223 ------------WENFLFKYPDLIWKFDENGHTIFHIAVSNRM----REIFKFIFEISSVADLLFDSKDKDGNNILHL  284 (396)
Q Consensus       223 ------------l~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~  284 (396)
                                  +-++|..+|+++|.. ..|.||||+|+..++    .+++++|+++|++.+  +|.+|..|.||||.
T Consensus       349 ~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d--IN~kd~~G~T~Lh~  423 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMA--INHVSNNGRLCMYG  423 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcc--ccccccCCCchHhH
Confidence                        123445678999985 799999999998875    899999999998433  78999999999994

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=254.96  Aligned_cols=142  Identities=26%  Similarity=0.361  Sum_probs=119.9

Q ss_pred             CCCCccccccccCCCccccc-ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVEEIR-TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||.+++++|+..++.+.... ...|||--||..|+.++||+|++ +++|++.. |..|.|+||+||..|+.+++++|++.
T Consensus        95 GHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~Ia-nrhGhTcLmIa~ykGh~~I~qyLle~  172 (615)
T KOG0508|consen   95 GHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIA-NRHGHTCLMIACYKGHVDIAQYLLEQ  172 (615)
T ss_pred             CcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCccc-ccCCCeeEEeeeccCchHHHHHHHHh
Confidence            78888999988887766544 34589999999999999999986 48888888 88999999999999999999999998


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhh
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE  153 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~  153 (396)
                      |  +++  |.++..|+|+||.|+..|+++++++|+.+|+.+.    .|..|.|||..|+..|+.++|++|++.
T Consensus       173 g--ADv--n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~----~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  173 G--ADV--NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID----VDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             C--CCc--chhcccCchHHHhhhhcccHHHHHHHHhCCceee----ecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            8  776  8899999999999999999999999999988753    256799999999999999999988853

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.8e-33  Score=266.12  Aligned_cols=306  Identities=11%  Similarity=0.020  Sum_probs=201.4

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcC--CHHHHHHHHHhC-ccccccccCCCCchHHHHHHH--cCCHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNG--DWARAKVIYDEH-KDEIGDVITRLGDTALHVAAA--ANRIDFVK   75 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g--~~~~v~~ll~~~-~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~   75 (396)
                      +|.+++++|+..+++.. +|..|.||||+|+..|  +.++|+.|++.. +++++.. +..+++|||.++.  .++.++|+
T Consensus        55 ~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-~~~~d~~l~~y~~s~n~~~~~vk  133 (672)
T PHA02730         55 TDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT-SNINDFDLYSYMSSDNIDLRLLK  133 (672)
T ss_pred             CcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc-cccCCchHHHHHHhcCCcHHHHH
Confidence            46789999999998766 7889999999999977  799999999762 3444655 6778889888888  78889999


Q ss_pred             HHHHHhhhcccchhccc-----CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCCcH-HHHH------H
Q 037504           76 KLVKKMKAENLDLAKRN-----RIGCTALFYAAASGSVELVKATMEGNEDITMV----PQDDKDRMLP-IVGA------A  139 (396)
Q Consensus        76 ~Ll~~~~~~~~d~~~~d-----~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~----~~~d~~g~tp-Lh~A------~  139 (396)
                      +|++.+ ..++  +...     ..|.+|+++++..++.++|++|+++|++++-.    ...|..+.+| ||++      .
T Consensus       134 ~Li~~~-~~~~--~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~  210 (672)
T PHA02730        134 YLIVDK-RIRP--SKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRES  210 (672)
T ss_pred             HHHHhc-CCCh--hhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhh
Confidence            999633 1333  3332     26788888888888888888888888885311    1223334433 3322      2


Q ss_pred             hcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccch-hhHHHHHHh--------------------------------
Q 037504          140 SLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSY-ETALHVLAR--------------------------------  185 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~-~t~L~~a~~--------------------------------  185 (396)
                      ..++.+++++|+++|+ .+.++.+|+||||.......+ .....+..+                                
T Consensus       211 ~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (672)
T PHA02730        211 ESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTP  290 (672)
T ss_pred             hccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhccc
Confidence            3456677777777776 455666777777632211100 000000000                                


Q ss_pred             -------------cCCC--------------------------------------------CCC-CCCcchhhhhhhccc
Q 037504          186 -------------KNLT--------------------------------------------SSN-QNPRGIFQRYFNLGA  207 (396)
Q Consensus       186 -------------~~~~--------------------------------------------~~~-~~~~~~~~~~~~~~~  207 (396)
                                   .+..                                            ... ....++++.+.+.|+
T Consensus       291 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA  370 (672)
T PHA02730        291 YNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA  370 (672)
T ss_pred             CCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC
Confidence                         0000                                            000 011122222222222


Q ss_pred             h--------hhhhHH--------HHHHHHHHHHHHHHhCCc--ccccccCCCCcHHHH---HHHcC---------cHHHH
Q 037504          208 K--------AVENER--------ALELVELLWENFLFKYPD--LIWKFDENGHTIFHI---AVSNR---------MREIF  257 (396)
Q Consensus       208 ~--------~~~~~~--------~~~~~~~ll~~ll~~~~~--~i~~~d~~g~t~Lh~---A~~~~---------~~~~v  257 (396)
                      .        ++.|..        ..++++.|++     .++  +++.+|.+|.||||.   |...+         ..+++
T Consensus       371 dIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs-----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv  445 (672)
T PHA02730        371 TMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVE-----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF  445 (672)
T ss_pred             CCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHH-----cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHH
Confidence            2        122211        1455655553     444  689999999999994   33332         23579


Q ss_pred             HHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcC-CCCCchhh
Q 037504          258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNN-DGLTPGDL  336 (396)
Q Consensus       258 ~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~-~g~tpl~~  336 (396)
                      ++|+++|++    +|.+|..|+||||+|+..++.+++++|                   +.+|++++.+|+ .|.||+++
T Consensus       446 k~LIs~GAD----INakD~~G~TPLh~Aa~~~~~eive~L-------------------I~~GAdIN~~d~~~g~TaL~~  502 (672)
T PHA02730        446 DILSKYMDD----IDMIDNENKTLLYYAVDVNNIQFARRL-------------------LEYGASVNTTSRSIINTAIQK  502 (672)
T ss_pred             HHHHhcccc----hhccCCCCCCHHHHHHHhCCHHHHHHH-------------------HHCCCCCCCCCCcCCcCHHHH
Confidence            999999999    999999999999999999998888887                   779999999997 59999999


Q ss_pred             HHH
Q 037504          337 FIK  339 (396)
Q Consensus       337 a~~  339 (396)
                      |..
T Consensus       503 Aa~  505 (672)
T PHA02730        503 SSY  505 (672)
T ss_pred             HHH
Confidence            976

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=5.2e-34  Score=283.87  Aligned_cols=310  Identities=20%  Similarity=0.194  Sum_probs=202.3

Q ss_pred             CCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHh
Q 037504            3 HSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKM   81 (396)
Q Consensus         3 h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   81 (396)
                      +..++++++..+..+. .+..|.+|||.|+..|+.++++.++.. ++.++.. +..|.||||.|+..+..+++++|++.|
T Consensus       221 ri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~-ga~~~~~-~vr~~tplh~AA~~~~~e~~~~ll~~g  298 (1143)
T KOG4177|consen  221 RIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQH-GASVNVS-TVRGETPLHMAARAGQVEVCKLLLQNG  298 (1143)
T ss_pred             ccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhc-ccccCcc-cccccCcchhhhccchhhhHhhhhccC
Confidence            4456677777766555 677788888888888888888887764 7778777 888888888888888888888888876


Q ss_pred             hhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc------------------------------ccCCCCCC
Q 037504           82 KAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITM------------------------------VPQDDKDR  131 (396)
Q Consensus        82 ~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~------------------------------~~~~d~~g  131 (396)
                        +++  ..++....||+|.|.+.|+.++++++++.++.++.                              ....+..|
T Consensus       299 --a~~--~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~  374 (1143)
T KOG4177|consen  299 --ADV--LAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKG  374 (1143)
T ss_pred             --ccc--ccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccC
Confidence              444  44444444444444444444444444444333110                              22233456


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccc--------------------hhhHHHHHHhcCC-C
Q 037504          132 MLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDS--------------------YETALHVLARKNL-T  189 (396)
Q Consensus       132 ~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~--------------------~~t~L~~a~~~~~-~  189 (396)
                      +||+|.|+.+|..+++++++..++ .+.....|.+++|.+...+.                    |.||+|+|+..|. .
T Consensus       375 ~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~  454 (1143)
T KOG4177|consen  375 FTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYL  454 (1143)
T ss_pred             CcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHh
Confidence            666666666666666666666666 45555566666654433211                    2666666666651 1


Q ss_pred             CCCC------------C--------------Ccchhhhhhhcc--------c-hhhhhHHHHHHHHHHHHHHHHhCCccc
Q 037504          190 SSNQ------------N--------------PRGIFQRYFNLG--------A-KAVENERALELVELLWENFLFKYPDLI  234 (396)
Q Consensus       190 ~~~~------------~--------------~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~ll~~ll~~~~~~i  234 (396)
                      ....            .              ..+.+..+.+..        . ....|.....-..... ..+...+..+
T Consensus       455 ~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~-~~l~~~ga~v  533 (1143)
T KOG4177|consen  455 QIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA-KILLEHGANV  533 (1143)
T ss_pred             hhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH-HHHhhcCCce
Confidence            0000            0              000011111110        0 0001111111111111 1335678889


Q ss_pred             ccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHH
Q 037504          235 WKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEV  314 (396)
Q Consensus       235 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v  314 (396)
                      +.++..|.||||+|+.+|+.++|++|+++|++    ++.+|+.|+||||.||..|+.+++.+|                 
T Consensus       534 ~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd----v~ak~~~G~TPLH~Aa~~G~~~i~~LL-----------------  592 (1143)
T KOG4177|consen  534 DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD----VNAKDKLGYTPLHQAAQQGHNDIAELL-----------------  592 (1143)
T ss_pred             ehhcccccchHHHHHhcCCchHHHHhhhCCcc----ccccCCCCCChhhHHHHcChHHHHHHH-----------------
Confidence            99999999999999999999999999999999    899999999999999999999988887                 


Q ss_pred             hhhcchhhhhhhcCCCCCchhhHHHHhH
Q 037504          315 KKVVPRKFAEEKNNDGLTPGDLFIKEHE  342 (396)
Q Consensus       315 ~~l~~~~~~~~~~~~g~tpl~~a~~~~~  342 (396)
                        +.+|+++|..|.+|.|||++|.....
T Consensus       593 --lk~GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  593 --LKHGASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             --HHcCCCCCcccccCcchhHHHHHhcc
Confidence              77999999999999999999987543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=223.20  Aligned_cols=176  Identities=14%  Similarity=0.150  Sum_probs=136.5

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcC--CHHHHHHHHHHhhhcccchhccc-CCCCc
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAAN--RIDFVKKLVKKMKAENLDLAKRN-RIGCT   97 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~d~~~~d-~~g~t   97 (396)
                      ..+.||||.|+..|+.++|+.|++.    ++.. |..|.||||+|+..+  +.+++++|++.|  +++  +.++ ..|.|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g--adv--n~~~~~~g~T   89 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-NDLYETPIFSCLEKDKVNVEILKFLIENG--ADV--NFKTRDNNLS   89 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhcc-CccCCCHHHHHHHcCCCCHHHHHHHHHCC--CCC--CccCCCCCCC
Confidence            3457888888888888888888753    3444 777888888888754  788888888877  666  7776 46888


Q ss_pred             HHHHHHHc---CCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHh--cCCHHHHHHHHhhcccCCCCcchhHHHHHHhh
Q 037504           98 ALFYAAAS---GSVELVKATMEGNEDITMVPQDDKDRMLPIVGAAS--LGHTEVVEFLYRETKNSLKDDDCIELLVKLIE  172 (396)
Q Consensus        98 pLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~--~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~  172 (396)
                      |||+|+..   ++.+++++|+++|++   ++.+|..|.||||+|+.  .++.+++++|++.|+                 
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gad---in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga-----------------  149 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSS---ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV-----------------  149 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC-----------------
Confidence            88887653   467888888888888   45566678888888765  356777777775543                 


Q ss_pred             ccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHH-HHHc
Q 037504          173 TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHI-AVSN  251 (396)
Q Consensus       173 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~-A~~~  251 (396)
                                                                                  +++.+|.+|.||||. |+..
T Consensus       150 ------------------------------------------------------------din~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859        150 ------------------------------------------------------------SFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             ------------------------------------------------------------CcccccCCCCcHHHHHHHhc
Confidence                                                                        466788899999995 5667


Q ss_pred             CcHHHHHHHHhhccccccccccccCCCCchhhhhhcCC
Q 037504          252 RMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLP  289 (396)
Q Consensus       252 ~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~  289 (396)
                      ++.+++++|+++|++    ++.+|..|.||||+|..++
T Consensus       170 ~~~~iv~~Ll~~Gad----i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGID----INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhhh
Confidence            899999999999999    8899999999999998765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=3.3e-32  Score=271.06  Aligned_cols=259  Identities=23%  Similarity=0.272  Sum_probs=222.9

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      ..+..|.||+|.|+..|..+.++.++.+ +.+++.. ++.|.||||.|+..++..+|+.+++.+  ++.  +..+..|+|
T Consensus       369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~-gk~gvTplh~aa~~~~~~~v~l~l~~g--A~~--~~~~~lG~T  442 (1143)
T KOG4177|consen  369 QAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSA-GKNGVTPLHVAAHYGNPRVVKLLLKRG--ASP--NAKAKLGYT  442 (1143)
T ss_pred             cccccCCcchhhhcccCchhHHHhhhhc-cCCcccC-CCCCcceeeehhhccCcceEEEEeccC--CCh--hhHhhcCCC
Confidence            3577889999999999999999888876 8888888 899999999999999999999999988  776  889999999


Q ss_pred             HHHHHHHcC-CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhc--
Q 037504           98 ALFYAAASG-SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIET--  173 (396)
Q Consensus        98 pLh~A~~~g-~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~--  173 (396)
                      |+|+|+..| ..+++..+++.|.+++   .....|.||||+|+..|+.++++.|++.++ .+.....+.+++|.+...  
T Consensus       443 ~lhvaa~~g~~~~~~~~l~~~g~~~n---~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  443 PLHVAAKKGRYLQIARLLLQYGADPN---AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             hhhhhhhcccHhhhhhhHhhcCCCcc---hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh
Confidence            999999999 8899999999999854   334579999999999999999999998886 555666777777665433  


Q ss_pred             ------------------cchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 037504          174 ------------------DSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW  235 (396)
Q Consensus       174 ------------------~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~  235 (396)
                                        +.+.||||.|+.+|                           .+.+|++|++     ++++++
T Consensus       520 v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g---------------------------~v~~VkfLLe-----~gAdv~  567 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTGRGYTPLHVAVHYG---------------------------NVDLVKFLLE-----HGADVN  567 (1143)
T ss_pred             HHHHHHHhhcCCceehhcccccchHHHHHhcC---------------------------CchHHHHhhh-----CCcccc
Confidence                              23489999999998                           4788888775     689999


Q ss_pred             cccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHh
Q 037504          236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVK  315 (396)
Q Consensus       236 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~  315 (396)
                      .+++.|+||||.||..|+.+++.+|+++|++    +|..|.+|.||||+|+..|+.++++.+                  
T Consensus       568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----vna~d~~g~TpL~iA~~lg~~~~~k~l------------------  625 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----VNAADLDGFTPLHIAVRLGYLSVVKLL------------------  625 (1143)
T ss_pred             ccCCCCCChhhHHHHcChHHHHHHHHHcCCC----CCcccccCcchhHHHHHhcccchhhHH------------------
Confidence            9999999999999999999999999999999    899999999999999999999999887                  


Q ss_pred             hhcchhh-----hhhhcCCCCCchhhHHHH
Q 037504          316 KVVPRKF-----AEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       316 ~l~~~~~-----~~~~~~~g~tpl~~a~~~  340 (396)
                       +..++.     ....+.+|.+|.++..+.
T Consensus       626 -~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  626 -KVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             -HhccCccccccchhhhhcccChhhHHHHh
Confidence             455555     778899999999997653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.2e-31  Score=247.65  Aligned_cols=198  Identities=23%  Similarity=0.240  Sum_probs=171.3

Q ss_pred             CCCCcccccccc-CC-CcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 037504            2 AHSAPLELHVYS-NP-PVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVK   79 (396)
Q Consensus         2 ~h~~~~~~~~~~-~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~   79 (396)
                      |+.+.++.++.+ +. ..+.|++|.|+||+||.+++++++++|+++ |+++|..-..-+.||||+|+++|+..+|.+|++
T Consensus        55 G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq  133 (600)
T KOG0509|consen   55 GELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ  133 (600)
T ss_pred             chHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHH
Confidence            344455666665 32 344677999999999999999999999985 999999955889999999999999999999999


Q ss_pred             HhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCC
Q 037504           80 KMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLK  159 (396)
Q Consensus        80 ~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~  159 (396)
                      +|  +++  +.+|.+|.||||+|++.|+.-.|-+|+.+|++   ++.+|.+|+||||+|+..|....+..|+..++    
T Consensus       134 hG--Adp--t~~D~~G~~~lHla~~~~~~~~vayll~~~~d---~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a----  202 (600)
T KOG0509|consen  134 HG--ADP--TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD---IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA----  202 (600)
T ss_pred             cC--CCC--ceecCCCCcHHHHHHHhCchHHHHHHHHhccc---CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc----
Confidence            99  877  99999999999999999999999999999988   77789999999999999999887888887665    


Q ss_pred             CcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCccccccc-
Q 037504          160 DDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD-  238 (396)
Q Consensus       160 ~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d-  238 (396)
                                                                                               .++..| 
T Consensus       203 -------------------------------------------------------------------------~~~~~d~  209 (600)
T KOG0509|consen  203 -------------------------------------------------------------------------SLLLTDD  209 (600)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     233344 


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       239 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                      ..|+||||+|+..|+.+++.+|++.|++    .+.+|.+|.||+.+|..+
T Consensus       210 ~~g~TpLHwa~~~gN~~~v~Ll~~g~~~----~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  210 NHGNTPLHWAVVGGNLTAVKLLLEGGAD----LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccCCchHHHHHhcCCcceEehhhhcCCc----ccccccCCCCHHHHHHHh
Confidence            8899999999999999999977777787    778899999999999776

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=6.9e-31  Score=249.71  Aligned_cols=281  Identities=14%  Similarity=0.098  Sum_probs=203.1

Q ss_pred             ccccccchHHHH-HHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHH-cCCHHHHHHHHHHhhhccc---------
Q 037504           18 EEIRTRRLKLYR-VALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAA-ANRIDFVKKLVKKMKAENL---------   86 (396)
Q Consensus        18 ~~~~~g~t~Lh~-A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~---------   86 (396)
                      ..+.+|.+++|+ |...|++|+|+.|++. |+++|.+ +..|.||||+|+. .++.|++++|++.|...+.         
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~-~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~  143 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSI-KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKII  143 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccc-cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchh
Confidence            456667778874 5667899999999985 9999988 7779999999965 6999999999999932111         


Q ss_pred             -----------------------chhcccCCCCcHHHHHHHcC-------CHHHHHHHHhcCCCCccccCCCCCCCcHHH
Q 037504           87 -----------------------DLAKRNRIGCTALFYAAASG-------SVELVKATMEGNEDITMVPQDDKDRMLPIV  136 (396)
Q Consensus        87 -----------------------d~~~~d~~g~tpLh~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh  136 (396)
                                             -+|..|..|.||||+|+..+       +.+++++|+++|++   ++..|..|.||||
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~---~~~~d~~g~t~l~  220 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE---MRYYTYREHTTLY  220 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC---cCccCCCCChHHH
Confidence                                   13466778999999999999       89999999999999   6667778999999


Q ss_pred             HHHhcC--CHHHHHHHHhhcccCCCCcchhHHHHH--------------------Hhhccch------------------
Q 037504          137 GAASLG--HTEVVEFLYRETKNSLKDDDCIELLVK--------------------LIETDSY------------------  176 (396)
Q Consensus       137 ~A~~~~--~~~~v~~Ll~~~~~~~~~~~g~~~l~~--------------------~~~~~~~------------------  176 (396)
                      +|+.+.  +.|++++|++..- ...+.  ...|.-                    .+..+..                  
T Consensus       221 ~~~~~~~i~~ei~~~L~~~~~-~~~~~--~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~  297 (631)
T PHA02792        221 YYVDKCDIKREIFDALFDSNY-SGNEL--MNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISS  297 (631)
T ss_pred             HHHHcccchHHHHHHHHhccc-cccch--HhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHH
Confidence            999999  8899999987432 11111  111111                    1111100                  


Q ss_pred             ---------hhHHHHHHhcCCCCCCCCCcchhhhhhhccchhh-----------hhHHHHHHHHHHHHHHHHhCCccccc
Q 037504          177 ---------ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAV-----------ENERALELVELLWENFLFKYPDLIWK  236 (396)
Q Consensus       177 ---------~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ll~~ll~~~~~~i~~  236 (396)
                               +-.||.-.+.+     ....+.++.+.+.|....           ......++++.|+     ..|++++.
T Consensus       298 ~~~~~~~~~q~~l~~Yl~~~-----~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLI-----s~GADIN~  367 (631)
T PHA02792        298 ILKRYTDSIQDLLSEYVSYH-----TVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYIL-----KNGNVVVE  367 (631)
T ss_pred             HHHHHhHHHHHHHHHHHhcC-----CccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHH-----HcCCchhh
Confidence                     11222222222     123344444444444311           1112344554443     56888999


Q ss_pred             ccCCC--CcHHHHHHHcCcH---HHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHH
Q 037504          237 FDENG--HTIFHIAVSNRMR---EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWF  311 (396)
Q Consensus       237 ~d~~g--~t~Lh~A~~~~~~---~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~  311 (396)
                      +|.+|  .||||+|+.....   +++++|+++|++    +|.+|..|+||||+|+..++.+++++|              
T Consensus       368 kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD----IN~kD~~G~TPLh~Aa~~~n~eivelL--------------  429 (631)
T PHA02792        368 DDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD----INKIDKHGRSILYYCIESHSVSLVEWL--------------  429 (631)
T ss_pred             hcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc----cccccccCcchHHHHHHcCCHHHHHHH--------------
Confidence            98775  6999998876654   468899999999    899999999999999999998888887              


Q ss_pred             HHHhhhcchhhhhhhcCCCCCchhhHHH
Q 037504          312 QEVKKVVPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       312 ~~v~~l~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                           +.+|++++.+|..|+||+++|..
T Consensus       430 -----Ls~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        430 -----IDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             -----HHCCCCCCCcCCCCCCHHHHHHH
Confidence                 77899999999999999999864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=222.21  Aligned_cols=177  Identities=21%  Similarity=0.211  Sum_probs=149.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCccccCCC-CCC
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASG--SVELVKATMEGNEDITMVPQDD-KDR  131 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d-~~g  131 (396)
                      ...+.||||+|+..|+.++|+.|++..       +..|..|.||||+|+..+  +.+++++|+++|++++   .++ ..|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~-------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn---~~~~~~g   87 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV-------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN---FKTRDNN   87 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh-------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC---ccCCCCC
Confidence            466899999999999999999999753       667889999999999854  8999999999999954   444 379


Q ss_pred             CcHHHHHHhc---CCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccch
Q 037504          132 MLPIVGAASL---GHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAK  208 (396)
Q Consensus       132 ~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~  208 (396)
                      .||||+|+..   ++.+++++|+++|+                                                     
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~ga-----------------------------------------------------  114 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGS-----------------------------------------------------  114 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCC-----------------------------------------------------
Confidence            9999998754   36777777776554                                                     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHH--cCcHHHHHHHHhhccccccccccccCCCCchhhh-h
Q 037504          209 AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVS--NRMREIFKFIFEISSVADLLFDSKDKDGNNILHL-A  285 (396)
Q Consensus       209 ~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~--~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~-A  285 (396)
                                              +++.+|..|.||||+|+.  .++.+++++|+++|++    ++.+|..|+||||. |
T Consensus       115 ------------------------din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----in~~d~~g~t~Lh~~a  166 (209)
T PHA02859        115 ------------------------SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----FLNKDFDNNNILYSYI  166 (209)
T ss_pred             ------------------------CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----cccccCCCCcHHHHHH
Confidence                                    467788999999999986  4689999999999999    88999999999996 5


Q ss_pred             hcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          286 GKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       286 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      +..++.+++++|                   +..|++++.+|..|+||+++|..+.
T Consensus       167 ~~~~~~~iv~~L-------------------l~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        167 LFHSDKKIFDFL-------------------TSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HhcCCHHHHHHH-------------------HHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            667787887776                   6689999999999999999997543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.8e-29  Score=247.27  Aligned_cols=223  Identities=17%  Similarity=0.131  Sum_probs=178.1

Q ss_pred             HHHHHHHHHhCccccccccCCCCchHHHHHHHc---CCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCH----
Q 037504           36 WARAKVIYDEHKDEIGDVITRLGDTALHVAAAA---NRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSV----  108 (396)
Q Consensus        36 ~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~----  108 (396)
                      ++.|++|+. ++..++.. |.+|+||||+|+..   |+.++|++||+.|  +++  +.+|..|.||||+|+..|+.    
T Consensus        12 ~~~~~~l~~-~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v--~~~~~~g~TpL~~Aa~~g~~~v~~   85 (661)
T PHA02917         12 LDELKQMLR-DRDPNDTR-NQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNP--LHKNWRQLTPLEEYTNSRHVKVNK   85 (661)
T ss_pred             HHHHHHHHh-ccCccccc-CCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCc--cccCCCCCCHHHHHHHcCChhHHH
Confidence            467888997 47777776 99999999998665   8899999999998  777  89999999999999999985    


Q ss_pred             HHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHH--h
Q 037504          109 ELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLA--R  185 (396)
Q Consensus       109 ~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~--~  185 (396)
                      ++++.|++.+...+ +  .  ...+++|+|+..++.+++++|++.|+ .+.++.+|             .||||.++  .
T Consensus        86 ~~~~~Ll~~~~~~n-~--~--~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g-------------~T~L~~~~a~~  147 (661)
T PHA02917         86 DIAMALLEATGYSN-I--N--DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENH-------------RSVIENYVMTD  147 (661)
T ss_pred             HHHHHHHhccCCCC-C--C--CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCC-------------ccHHHHHHHcc
Confidence            45678887654321 2  2  23477888999999999999999999 66777778             89998654  3


Q ss_pred             cCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC---CC-----------CcHHHHHHH-
Q 037504          186 KNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE---NG-----------HTIFHIAVS-  250 (396)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~---~g-----------~t~Lh~A~~-  250 (396)
                      .+                           ..++++.|++     .|++++..|.   .|           .||||+|+. 
T Consensus       148 ~~---------------------------~~eivklLi~-----~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~  195 (661)
T PHA02917        148 DP---------------------------VPEIIDLFIE-----NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIIS  195 (661)
T ss_pred             CC---------------------------CHHHHHHHHH-----cCCCccccccccccccccccccccccccHHHHHHhh
Confidence            44                           4678877764     5777876553   34           599999986 


Q ss_pred             ----------cCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCC--CccccccchhHhHHHHHHHHHHHhhhc
Q 037504          251 ----------NRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPL--NRLNIVSVAALQLQRELLWFQEVKKVV  318 (396)
Q Consensus       251 ----------~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~--~~~~~l~~~~~~~~~~l~~~~~v~~l~  318 (396)
                                +++.+++++|+++|++    +|.+|.+|+||||+|++.|+.  +++++                    |.
T Consensus       196 ~~~~~~~~~~~~~~eiv~~Li~~Gad----vn~~d~~G~TpLh~A~~~g~~~~eivk~--------------------Li  251 (661)
T PHA02917        196 HLYSESDTRAYVRPEVVKCLINHGIK----PSSIDKNYCTALQYYIKSSHIDIDIVKL--------------------LM  251 (661)
T ss_pred             cccccccccccCcHHHHHHHHHCCCC----cccCCCCCCcHHHHHHHcCCCcHHHHHH--------------------HH
Confidence                      4688999999999999    899999999999999999986  45555                    44


Q ss_pred             chhhhh----hhcCCCCCchhhHH
Q 037504          319 PRKFAE----EKNNDGLTPGDLFI  338 (396)
Q Consensus       319 ~~~~~~----~~~~~g~tpl~~a~  338 (396)
                      .|++++    ..|..|.||++++.
T Consensus       252 ~g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        252 KGIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             hCCcccccccccCcccccchHHHH
Confidence            576654    46667888888776

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.7e-29  Score=229.14  Aligned_cols=210  Identities=18%  Similarity=0.150  Sum_probs=173.4

Q ss_pred             HHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchh------cccCCCCcHHHHHHH
Q 037504           31 ALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA------KRNRIGCTALFYAAA  104 (396)
Q Consensus        31 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~------~~d~~g~tpLh~A~~  104 (396)
                      ..+.-.+++..++-.+|.+++.. +.+|     +|+..+..|++++|+++|  +++  +      .++..++|+||+++.
T Consensus        56 ~~~~~~~~~~~~~~~~~~~i~~~-~~~~-----~~~~~~~k~~~~~l~s~~--~~~--~~~~~~~~~~~~~~~~L~~~~~  125 (437)
T PHA02795         56 PICDPVDVLYDYFRIHRDNIDQY-IVDR-----LFAYITYKDIISALVSKN--YME--DIFSIIIKNCNSVQDLLLYYLS  125 (437)
T ss_pred             ccCCHHHHHHHHHHHcCcchhhh-hhhh-----HHhhcchHHHHHHHHhcc--ccc--chhhhhhhccccccHHHHHHHH
Confidence            33455666655555679999887 6666     999999999999999999  776  5      688889999999999


Q ss_pred             --cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHH
Q 037504          105 --SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHV  182 (396)
Q Consensus       105 --~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~  182 (396)
                        .|+.++|++|+++|++++   ..  ++.||||.|+..++.+++++|+++|+....  .+.++++..    .+.+++|.
T Consensus       126 n~~n~~eiV~~LI~~GADIn---~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n--~~~~~l~~~----~~~t~l~~  194 (437)
T PHA02795        126 NAYVEIDIVDFMVDHGAVIY---KI--ECLNAYFRGICKKESSVVEFILNCGIPDEN--DVKLDLYKI----IQYTRGFL  194 (437)
T ss_pred             hcCCCHHHHHHHHHCCCCCC---CC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccc--cccchhhhh----hccchhHH
Confidence              899999999999999954   44  668999999999999999999999972221  122222211    12688999


Q ss_pred             HHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh
Q 037504          183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE  262 (396)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  262 (396)
                      |+..+                           ..++++.++     .+++++|.+|..|+||||+|+..|+.+++++|++
T Consensus       195 a~~~~---------------------------~~eIve~LI-----s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~  242 (437)
T PHA02795        195 VDEPT---------------------------VLEIYKLCI-----PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLE  242 (437)
T ss_pred             HHhcC---------------------------HHHHHHHHH-----hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            98877                           467777665     4688999999999999999999999999999999


Q ss_pred             hccccccccccccCCCCchhhhhhcCCC--------CCccccc
Q 037504          263 ISSVADLLFDSKDKDGNNILHLAGKLPP--------LNRLNIV  297 (396)
Q Consensus       263 ~g~~~~~~~n~~d~~g~TpLh~A~~~~~--------~~~~~~l  297 (396)
                      +|++    +|.+|..|+||||+|+..|+        .+++++|
T Consensus       243 ~GAd----IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelL  281 (437)
T PHA02795        243 NGAN----VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEIL  281 (437)
T ss_pred             CCCC----CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHH
Confidence            9999    89999999999999999985        3677766

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=218.72  Aligned_cols=215  Identities=20%  Similarity=0.246  Sum_probs=177.8

Q ss_pred             HHHHcCCHHHHHHHHHhCc-ccc---ccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhccc------chhcccCCCCcH
Q 037504           29 RVALNGDWARAKVIYDEHK-DEI---GDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL------DLAKRNRIGCTA   98 (396)
Q Consensus        29 ~A~~~g~~~~v~~ll~~~~-~~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~------d~~~~d~~g~tp   98 (396)
                      .|++.|....+..|+.... .++   -.. ..+|.|||-+||++||.++|++|+++. .+++      ..+-....|-+|
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~-~~~g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGE-VQNGGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhcc-ccCCCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCch
Confidence            6788888877777765422 111   112 467889999999999999999999965 1222      123345678899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYE  177 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~  177 (396)
                      |..|+..||+++|+.|+++|++   ++.......|||-.||..|+.+++++|+++++ ..+.+..|             .
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~---VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhG-------------h  151 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGAS---VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHG-------------H  151 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCc---cccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCC-------------C
Confidence            9999999999999999999988   55555578899999999999999999999999 67777777             8


Q ss_pred             hHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHH
Q 037504          178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIF  257 (396)
Q Consensus       178 t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v  257 (396)
                      |.||+|+.+|                           ..++++++++     .++++|.++..|+|+||.++..|+.+++
T Consensus       152 TcLmIa~ykG---------------------------h~~I~qyLle-----~gADvn~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  152 TCLMIACYKG---------------------------HVDIAQYLLE-----QGADVNAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             eeEEeeeccC---------------------------chHHHHHHHH-----hCCCcchhcccCchHHHhhhhcccHHHH
Confidence            9999999999                           3688888876     4889999999999999999999999999


Q ss_pred             HHHHhhccccccccccccCCCCchhhhhhcCCCCCcccccc
Q 037504          258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVS  298 (396)
Q Consensus       258 ~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~  298 (396)
                      ++|+++|+..     .+|..|.|||..|+..|+.++|..|.
T Consensus       200 q~Ll~~ga~i-----~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  200 QLLLKHGAKI-----DVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHHhCCcee-----eecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999983     35778999999999999999998874

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=226.56  Aligned_cols=236  Identities=15%  Similarity=0.157  Sum_probs=171.7

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHH-cCCHHHHHHHHHhCccccc----------------------------
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVAL-NGDWARAKVIYDEHKDEIG----------------------------   51 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~-~g~~~~v~~ll~~~~~~~~----------------------------   51 (396)
                      ++.+++++|+..+++.. .+..|.+|||+|+. .|+.|++++||+. |+++.                            
T Consensus        83 ~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  161 (631)
T PHA02792         83 IDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQITRAEYYNWDDELDD  161 (631)
T ss_pred             ccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhcccccccchhhhccc
Confidence            56788999999988775 45557899999966 6999999999986 65421                            


Q ss_pred             --------cccCCCCchHHHHHHHcC-------CHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcC--CHHHHHHH
Q 037504           52 --------DVITRLGDTALHVAAAAN-------RIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASG--SVELVKAT  114 (396)
Q Consensus        52 --------~~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g--~~~~v~~L  114 (396)
                              .. |..|.||||+|+..+       +.++++.|+++|  +++  +.+|..|.||||+|+...  ..|++++|
T Consensus       162 ~~~~~~i~~~-~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g--~~~--~~~d~~g~t~l~~~~~~~~i~~ei~~~L  236 (631)
T PHA02792        162 YDYDYTTDYD-DRMGKTVLYYYIITRSQDGYATSLDVINYLISHE--KEM--RYYTYREHTTLYYYVDKCDIKREIFDAL  236 (631)
T ss_pred             cccccccccC-CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC--CCc--CccCCCCChHHHHHHHcccchHHHHHHH
Confidence                    22 566999999999999       899999999998  777  889999999999999988  77888888


Q ss_pred             HhcCCCCc-------------------ccc---------------------CC---------------------------
Q 037504          115 MEGNEDIT-------------------MVP---------------------QD---------------------------  127 (396)
Q Consensus       115 l~~g~~~~-------------------~~~---------------------~~---------------------------  127 (396)
                      ++..-...                   .++                     ..                           
T Consensus       237 ~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~  316 (631)
T PHA02792        237 FDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSY  316 (631)
T ss_pred             HhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhc
Confidence            76422000                   000                     00                           


Q ss_pred             ----------------C---CCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcC
Q 037504          128 ----------------D---KDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKN  187 (396)
Q Consensus       128 ----------------d---~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~  187 (396)
                                      +   .....+++.|+..|+.+++++|+++|+ .+.++.+|.           +.||||+|+...
T Consensus       317 ~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~-----------~~TpLh~A~~n~  385 (631)
T PHA02792        317 HTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNII-----------NIMPLFPTLSIH  385 (631)
T ss_pred             CCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCC-----------ChhHHHHHHHhc
Confidence                            0   012334555555666666666666665 222333221           157777765543


Q ss_pred             CCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcccc
Q 037504          188 LTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA  267 (396)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  267 (396)
                                              .....++++.+     ..+++++|.+|..|+||||+|+..++.+++++|+++|++ 
T Consensus       386 ------------------------~~~v~~IlklL-----Is~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD-  435 (631)
T PHA02792        386 ------------------------ESDVLSILKLC-----KPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD-  435 (631)
T ss_pred             ------------------------cHhHHHHHHHH-----HhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC-
Confidence                                    11122333333     457889999999999999999999999999999999999 


Q ss_pred             ccccccccCCCCchhhhhhc
Q 037504          268 DLLFDSKDKDGNNILHLAGK  287 (396)
Q Consensus       268 ~~~~n~~d~~g~TpLh~A~~  287 (396)
                         +|.+|..|+||||+|+.
T Consensus       436 ---IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        436 ---INITTKYGSTCIGICVI  452 (631)
T ss_pred             ---CCCcCCCCCCHHHHHHH
Confidence               89999999999999975

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.7e-26  Score=234.34  Aligned_cols=178  Identities=17%  Similarity=0.172  Sum_probs=151.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..+.++||.||..|+.++++.|++.|  .++  |.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|.||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~--n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad---in~~d~~G~Tp  594 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAK--LDP--DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN---VHIRDANGNTA  594 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCC--CCC--CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC---CCCcCCCCCCH
Confidence            556789999999999999999999988  666  88999999999999999999999999999998   55667789999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHH
Q 037504          135 IVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENER  214 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ||+|+..|+.+++++|++.++. .....+             .++||.|+..|                           
T Consensus       595 L~~A~~~g~~~iv~~L~~~~~~-~~~~~~-------------~~~L~~Aa~~g---------------------------  633 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHFASI-SDPHAA-------------GDLLCTAAKRN---------------------------  633 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhcCcc-cCcccC-------------chHHHHHHHhC---------------------------
Confidence            9999999999999999977652 222233             68899999988                           


Q ss_pred             HHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCC-CchhhhhhcCC
Q 037504          215 ALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDG-NNILHLAGKLP  289 (396)
Q Consensus       215 ~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g-~TpLh~A~~~~  289 (396)
                      ..++++.+++     .+.++|.+|.+|+||||+|+..|+.+++++|+++|++    ++..|..| .||++++....
T Consensus       634 ~~~~v~~Ll~-----~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd----v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        634 DLTAMKELLK-----QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD----VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC----CCCCCCCCCCCHHHHHHHHH
Confidence            3566666653     5788999999999999999999999999999999999    88899988 99999886543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.6e-26  Score=210.21  Aligned_cols=185  Identities=12%  Similarity=-0.029  Sum_probs=159.0

Q ss_pred             HHHHcCCHHHHHHHHHhCccccc------cccCCCCchHHHHHHH--cCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           29 RVALNGDWARAKVIYDEHKDEIG------DVITRLGDTALHVAAA--ANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        29 ~A~~~g~~~~v~~ll~~~~~~~~------~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      +|+..+..++++.|+.. +++++      .+ +..++|+||+|+.  .|+.++|++|+++|  +++  +.+  ++.||||
T Consensus        83 ~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~-~~~~~~~L~~~~~n~~n~~eiV~~LI~~G--ADI--n~~--~~~t~lh  154 (437)
T PHA02795         83 LFAYITYKDIISALVSK-NYMEDIFSIIIKN-CNSVQDLLLYYLSNAYVEIDIVDFMVDHG--AVI--YKI--ECLNAYF  154 (437)
T ss_pred             HHhhcchHHHHHHHHhc-ccccchhhhhhhc-cccccHHHHHHHHhcCCCHHHHHHHHHCC--CCC--CCC--CCCCHHH
Confidence            99999999999988875 88877      55 7889999999999  89999999999999  887  664  4589999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccC---CCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccch
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQ---DDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSY  176 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~---~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~  176 (396)
                      +|+..++.+++++|+++|++......   .+..+.|++|.|+..++.+++++|+++|+ .+..+..|             
T Consensus       155 ~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G-------------  221 (437)
T PHA02795        155 RGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGG-------------  221 (437)
T ss_pred             HHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCC-------------
Confidence            99999999999999999985321111   11347899999999999999999999998 66677777             


Q ss_pred             hhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcC----
Q 037504          177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNR----  252 (396)
Q Consensus       177 ~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~----  252 (396)
                      .||||+|+..|                           ..++++.|+     ..|++++.+|..|+||||+|+..|    
T Consensus       222 ~TpLh~Aa~~g---------------------------~~eiVelLL-----~~GAdIN~~d~~G~TpLh~Aa~~g~~~~  269 (437)
T PHA02795        222 RTLLYRAIYAG---------------------------YIDLVSWLL-----ENGANVNAVMSNGYTCLDVAVDRGSVIA  269 (437)
T ss_pred             CCHHHHHHHcC---------------------------CHHHHHHHH-----HCCCCCCCcCCCCCCHHHHHHHcCCccc
Confidence            89999999998                           356776665     468999999999999999999998    


Q ss_pred             ----cHHHHHHHHhhccc
Q 037504          253 ----MREIFKFIFEISSV  266 (396)
Q Consensus       253 ----~~~~v~~Ll~~g~~  266 (396)
                          +.+++++|+++|++
T Consensus       270 ~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        270 RRETHLKILEILLREPLS  287 (437)
T ss_pred             ccccHHHHHHHHHhCCCC
Confidence                46999999999998

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-26  Score=216.48  Aligned_cols=245  Identities=22%  Similarity=0.218  Sum_probs=190.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCc------------cccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc
Q 037504           25 LKLYRVALNGDWARAKVIYDEHK------------DEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN   92 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~------------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d   92 (396)
                      +-|..|+..|+.+.+..+|+..+            ..++.. |.+|.|+||.|+.+|+.+++++|++.-  +-+  +..|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalhha~Lng~~~is~llle~e--a~l--dl~d   79 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLHHAVLNGQNQISKLLLDYE--ALL--DLCD   79 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHHHHHhcCchHHHHHHhcch--hhh--hhhh
Confidence            45677888888888888887421            234455 788888899998888888888888875  544  7777


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHh
Q 037504           93 RIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLI  171 (396)
Q Consensus        93 ~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~  171 (396)
                      ..|.+|||+|+..|+.+++++|+.++..   .+.....|.||||.|+++|+.+++.+|+.+++ ..+.+..+        
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~---~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~--------  148 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDI---LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSK--------  148 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccC---CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCccc--------
Confidence            8888889998888888888888888854   44555678888999888888888888888888 44455555        


Q ss_pred             hccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHH-----HHhCCcccccccCCCCcHHH
Q 037504          172 ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENF-----LFKYPDLIWKFDENGHTIFH  246 (396)
Q Consensus       172 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l-----l~~~~~~i~~~d~~g~t~Lh  246 (396)
                           .|+|.+|++.|                           ..++++.++..-     +..-+  -..++-.+-+|||
T Consensus       149 -----~t~ldlA~qfg---------------------------r~~Vvq~ll~~~~~~~~~~~~~--~~~~~~~~~~plH  194 (854)
T KOG0507|consen  149 -----ETVLDLASRFG---------------------------RAEVVQMLLQKKFPVQSSLRVG--DIKRPFPAIYPLH  194 (854)
T ss_pred             -----ccHHHHHHHhh---------------------------hhHHHHHHhhhccchhhcccCC--CCCCCCCCcCCcc
Confidence                 78888888888                           344444444321     11112  2345677899999


Q ss_pred             HHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhh
Q 037504          247 IAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEK  326 (396)
Q Consensus       247 ~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~  326 (396)
                      .|+++|+.++++.|+..|.+    +|...+. -|+||-|+..|..+++.+|                   +..|.+.+++
T Consensus       195 laakngh~~~~~~ll~ag~d----in~~t~~-gtalheaalcgk~evvr~l-------------------l~~gin~h~~  250 (854)
T KOG0507|consen  195 LAAKNGHVECMQALLEAGFD----INYTTED-GTALHEAALCGKAEVVRFL-------------------LEIGINTHIK  250 (854)
T ss_pred             hhhhcchHHHHHHHHhcCCC----ccccccc-chhhhhHhhcCcchhhhHH-------------------Hhhccccccc
Confidence            99999999999999999999    7766655 4999999999999999888                   7788889999


Q ss_pred             cCCCCCchhhHHHHhHH
Q 037504          327 NNDGLTPGDLFIKEHEE  343 (396)
Q Consensus       327 ~~~g~tpl~~a~~~~~~  343 (396)
                      |.+|+|.|++..+....
T Consensus       251 n~~~qtaldil~d~~~~  267 (854)
T KOG0507|consen  251 NQHGQTALDIIIDLQEN  267 (854)
T ss_pred             cccchHHHHHHHhcchh
Confidence            99999999998765443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=3.9e-27  Score=189.53  Aligned_cols=237  Identities=21%  Similarity=0.168  Sum_probs=195.1

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHH
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL   99 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpL   99 (396)
                      +..|...+-.+.+.|+.+.++..+.-.+..+... +.+|+.++|.|+-.|+...++.+|..+  +..  |..+-.+.+|+
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t-~p~g~~~~~v~ap~~s~~k~sttltN~--~rg--nevs~~p~s~~  133 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDET-DPEGWSALLVAAPCGSVDKVSTTLTNG--ARG--NEVSLMPWSPL  133 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCC-CchhhhhhhhcCCCCCcceeeeeeccc--ccC--CccccccCChh
Confidence            4456666777888888888777665434334444 788999999999999999999999988  666  88899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhh
Q 037504          100 FYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYET  178 (396)
Q Consensus       100 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t  178 (396)
                      .+++...+++.+..|.+.-     ++..|+.|+|||.||+..|++++|+||++.|+ +..-.+..             .+
T Consensus       134 slsVhql~L~~~~~~~~n~-----VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~r-------------es  195 (296)
T KOG0502|consen  134 SLSVHQLHLDVVDLLVNNK-----VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYR-------------ES  195 (296)
T ss_pred             hHHHHHHHHHHHHHHhhcc-----ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhh-------------hh
Confidence            9999999999888887654     55668899999999999999999999999999 44443333             79


Q ss_pred             HHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHH
Q 037504          179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFK  258 (396)
Q Consensus       179 ~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~  258 (396)
                      +|.+|++.|                           ..++++.+++     +..++|..|-+|-|||-+|++.|+.++++
T Consensus       196 ALsLAt~gg---------------------------ytdiV~lLL~-----r~vdVNvyDwNGgTpLlyAvrgnhvkcve  243 (296)
T KOG0502|consen  196 ALSLATRGG---------------------------YTDIVELLLT-----REVDVNVYDWNGGTPLLYAVRGNHVKCVE  243 (296)
T ss_pred             hHhHHhcCC---------------------------hHHHHHHHHh-----cCCCcceeccCCCceeeeeecCChHHHHH
Confidence            999999998                           5788877664     56779999999999999999999999999


Q ss_pred             HHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchh
Q 037504          259 FIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGD  335 (396)
Q Consensus       259 ~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~  335 (396)
                      .|+..|++    ++..|..|++++.+|+..|+. +|+..                   +.+.++..-+|+.-+||+|
T Consensus       244 ~Ll~sGAd----~t~e~dsGy~~mdlAValGyr-~Vqqv-------------------ie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  244 SLLNSGAD----VTQEDDSGYWIMDLAVALGYR-IVQQV-------------------IEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHhcCCC----cccccccCCcHHHHHHHhhhH-HHHHH-------------------HHHHHHHHhhcccCCCCCC
Confidence            99999999    889999999999999999985 44333                   3345667777888888875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=8.1e-26  Score=230.88  Aligned_cols=192  Identities=16%  Similarity=0.216  Sum_probs=160.5

Q ss_pred             CCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHH
Q 037504           69 NRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVE  148 (396)
Q Consensus        69 g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~  148 (396)
                      ...++-..+.+.+  .    ...+..+.++||.||..|+.++++.|++.|++   ++..|..|.||||+|+..|+.++++
T Consensus       505 ~~l~v~~ll~~~~--~----~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d---~n~~d~~G~TpLh~Aa~~g~~~~v~  575 (823)
T PLN03192        505 HDLNVGDLLGDNG--G----EHDDPNMASNLLTVASTGNAALLEELLKAKLD---PDIGDSKGRTPLHIAASKGYEDCVL  575 (823)
T ss_pred             ccccHHHHHhhcc--c----ccCCccchhHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcChHHHHH
Confidence            3445555555543  1    23445678999999999999999999999999   5667889999999999999999999


Q ss_pred             HHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 037504          149 FLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFL  227 (396)
Q Consensus       149 ~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll  227 (396)
                      +|+++|+ .+..+.+|             .||||+|+..|                        +   .++++.+++   
T Consensus       576 ~Ll~~gadin~~d~~G-------------~TpL~~A~~~g------------------------~---~~iv~~L~~---  612 (823)
T PLN03192        576 VLLKHACNVHIRDANG-------------NTALWNAISAK------------------------H---HKIFRILYH---  612 (823)
T ss_pred             HHHhcCCCCCCcCCCC-------------CCHHHHHHHhC------------------------C---HHHHHHHHh---
Confidence            9999998 56677777             89999999998                        3   455655543   


Q ss_pred             HhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHH
Q 037504          228 FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRE  307 (396)
Q Consensus       228 ~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~  307 (396)
                        .+...  ....|.++||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..|+.+++++|          
T Consensus       613 --~~~~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----in~~d~~G~TpLh~A~~~g~~~iv~~L----------  674 (823)
T PLN03192        613 --FASIS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLN----VDSEDHQGATALQVAMAEDHVDMVRLL----------  674 (823)
T ss_pred             --cCccc--CcccCchHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCCcHHHHHHH----------
Confidence              23322  235678999999999999999999999999    899999999999999999999999888          


Q ss_pred             HHHHHHHhhhcchhhhhhhcCCC-CCchhhHHH
Q 037504          308 LLWFQEVKKVVPRKFAEEKNNDG-LTPGDLFIK  339 (396)
Q Consensus       308 l~~~~~v~~l~~~~~~~~~~~~g-~tpl~~a~~  339 (396)
                               +.+|++++.+|..| .||++++..
T Consensus       675 ---------l~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        675 ---------IMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             ---------HHcCCCCCCCCCCCCCCHHHHHHH
Confidence                     77999999999998 999998754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.1e-25  Score=228.74  Aligned_cols=236  Identities=18%  Similarity=0.150  Sum_probs=173.9

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHh-CccccccccCCCCchHHH-HHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDE-HKDEIGDVITRLGDTALH-VAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~-~~~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      -..+..+++.|++.|+.+.++.+++. .+.++|.. |..|+|||| .|+..++.++++.|++.+  .      ++..|.|
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~g--~------~~~~G~T   84 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNLS--C------RGAVGDT   84 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhCC--C------CCCcChH
Confidence            34568999999999999999999974 26778877 899999999 899999999999999987  2      5778999


Q ss_pred             HHHHHHHcC---CHHHHHHHHhcCCCC------c-cccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHH
Q 037504           98 ALFYAAASG---SVELVKATMEGNEDI------T-MVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIEL  166 (396)
Q Consensus        98 pLh~A~~~g---~~~~v~~Ll~~g~~~------~-~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~  166 (396)
                      |||.|+..+   ...+++.+...+.+.      + .....+..|.||||+|+..|+.+++++|+++|+ .+.... +...
T Consensus        85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~-~~~~  163 (743)
T TIGR00870        85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC-GDFF  163 (743)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC-Cchh
Confidence            999998732   223445555444321      0 011223469999999999999999999999998 332211 1110


Q ss_pred             HHHH--hhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcH
Q 037504          167 LVKL--IETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTI  244 (396)
Q Consensus       167 l~~~--~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~  244 (396)
                      ....  -....+.+|||+|+..+                           ..++++.++     .+|++++.+|..|+||
T Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~~---------------------------~~~iv~lLl-----~~gadin~~d~~g~T~  211 (743)
T TIGR00870       164 VKSQGVDSFYHGESPLNAAACLG---------------------------SPSIVALLS-----EDPADILTADSLGNTL  211 (743)
T ss_pred             hcCCCCCcccccccHHHHHHHhC---------------------------CHHHHHHHh-----cCCcchhhHhhhhhHH
Confidence            0000  00123589999999888                           356666554     4788999999999999


Q ss_pred             HHHHHHcC---------cHHHHHHHHhhccccc---cccccccCCCCchhhhhhcCCCCCccccc
Q 037504          245 FHIAVSNR---------MREIFKFIFEISSVAD---LLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       245 Lh~A~~~~---------~~~~v~~Ll~~g~~~~---~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ||+|+..+         ...+.+++++.++...   .+.+..|.+|.||||+|+..|+.++++++
T Consensus       212 Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       212 LHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            99999986         2346667776665521   11266899999999999999999998877

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=6e-25  Score=199.20  Aligned_cols=232  Identities=21%  Similarity=0.229  Sum_probs=184.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      -.+..|+..|+.+.|..||.. ++.++.. +.+|.|+||-+|...+.+||++|++.|  +++  |..|..|+||||.|+.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~-n~DglTalhq~~id~~~e~v~~l~e~g--a~V--n~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLC-NVDGLTALHQACIDDNLEMVKFLVENG--ANV--NAQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCcccc-CCccchhHHHHHhcccHHHHHHHHHhc--CCc--cccccccCCcchhhcc
Confidence            456778999999999999975 7788888 999999999999999999999999999  888  9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHH
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLA  184 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~  184 (396)
                      .|+..++++|+++|+++..+   +.+|..|+.++......+++..-......++                      . ++
T Consensus       116 cg~~~i~~~li~~gA~~~av---Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~i----------------------e-a~  169 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAV---NSDGNMPYDLAEDEATLDVLETEMARQGIDI----------------------E-AA  169 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhc---cCCCCCccccccCcchhHHHHHHHHHhcccH----------------------H-HH
Confidence            99999999999999996544   4468888888776655555544433222111                      0 11


Q ss_pred             hcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhc
Q 037504          185 RKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEIS  264 (396)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  264 (396)
                      +.-                          ....+++.+...  ...+...+..+..|.|.||+|+.+|..++.++|+.+|
T Consensus       170 R~~--------------------------~e~~ml~D~~q~--l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  170 RKA--------------------------EEQTMLDDARQW--LNAGAELDARHARGATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             hhh--------------------------hHHHHHHHHHHH--HhccccccccccccchHHHHHHhhhHHHHHHHHHHhc
Confidence            100                          011111111111  1256666777777999999999999999999999999


Q ss_pred             cccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHH
Q 037504          265 SVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       265 ~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                      .+    ++.+|.+|+||||.|+.-|..+.+.+|                   ..++++.+.+.+.|.||+++|.+
T Consensus       222 ~~----~~~~D~dgWtPlHAAA~Wg~~~~~elL-------------------~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  222 YS----VNIKDYDGWTPLHAAAHWGQEDACELL-------------------VEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cC----cccccccCCCcccHHHHhhhHhHHHHH-------------------HHhhcccchhhhcCCCCccchhh
Confidence            99    899999999999999999998888766                   66899999999999999999876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=6.4e-25  Score=205.79  Aligned_cols=221  Identities=23%  Similarity=0.205  Sum_probs=183.4

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      .+|.+|.|+||.|+.+|+.++++.|++. .+.++.. |..|.+|||+|+..|+.++|+.++.++  ..+  |..+..|.|
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~-d~kg~~plhlaaw~g~~e~vkmll~q~--d~~--na~~~e~~t  117 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLC-DTKGILPLHLAAWNGNLEIVKMLLLQT--DIL--NAVNIENET  117 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhh-hccCcceEEehhhcCcchHHHHHHhcc--cCC--CcccccCcC
Confidence            3677999999999999999999988875 6777777 799999999999999999999999997  555  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccch
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSY  176 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~  176 (396)
                      |||.|+..||.+++.+|+.+|++.   ...+..+.|+|-+|++.|..++++.|++..- .......|     .-...-..
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp---~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~-----~~~~~~~~  189 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADP---FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVG-----DIKRPFPA  189 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCc---cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCC-----CCCCCCCC
Confidence            999999999999999999999994   4456689999999999999999999998732 11111111     01111223


Q ss_pred             hhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHH
Q 037504          177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREI  256 (396)
Q Consensus       177 ~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~  256 (396)
                      -+|||+|+++|                        |   .++++.+     ...|.++|....+| |+||.|+.+|..++
T Consensus       190 ~~plHlaakng------------------------h---~~~~~~l-----l~ag~din~~t~~g-talheaalcgk~ev  236 (854)
T KOG0507|consen  190 IYPLHLAAKNG------------------------H---VECMQAL-----LEAGFDINYTTEDG-TALHEAALCGKAEV  236 (854)
T ss_pred             cCCcchhhhcc------------------------h---HHHHHHH-----HhcCCCcccccccc-hhhhhHhhcCcchh
Confidence            79999999999                        4   3444444     35788899888877 89999999999999


Q ss_pred             HHHHHhhccccccccccccCCCCchhhhhhcCC
Q 037504          257 FKFIFEISSVADLLFDSKDKDGNNILHLAGKLP  289 (396)
Q Consensus       257 v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~  289 (396)
                      |++|++.|..    ...+|.+|.|+|.+-....
T Consensus       237 vr~ll~~gin----~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  237 VRFLLEIGIN----THIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hhHHHhhccc----cccccccchHHHHHHHhcc
Confidence            9999999999    6789999999999876543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=5.9e-25  Score=177.02  Aligned_cols=210  Identities=22%  Similarity=0.228  Sum_probs=182.4

Q ss_pred             cCCCcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc
Q 037504           13 SNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN   92 (396)
Q Consensus        13 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d   92 (396)
                      ...+.+.+..|.++++.|+-+|+.+.+...|.. ++..|.. +-.+++|+.+++...+++++..+.+.    .+  |..|
T Consensus        86 ~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnev-s~~p~s~~slsVhql~L~~~~~~~~n----~V--N~~D  157 (296)
T KOG0502|consen   86 PDAIDETDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEV-SLMPWSPLSLSVHQLHLDVVDLLVNN----KV--NACD  157 (296)
T ss_pred             CCCCCCCCchhhhhhhhcCCCCCcceeeeeecc-cccCCcc-ccccCChhhHHHHHHHHHHHHHHhhc----cc--cCcc
Confidence            345566788899999999999999999888864 8888888 88999999999999999888777764    35  9999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHh
Q 037504           93 RIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLI  171 (396)
Q Consensus        93 ~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~  171 (396)
                      ..|.|||.||++.|++++|++|++.|+++..+   .+...|+|.+|+..|..++|++|+.++. .+.-+.+|        
T Consensus       158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l---gk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNG--------  226 (296)
T KOG0502|consen  158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL---GKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNG--------  226 (296)
T ss_pred             ccCchHhHHHHhcCchHHHHHHHHcCCChhhh---hhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCC--------
Confidence            99999999999999999999999999996533   4478899999999999999999999998 67777777        


Q ss_pred             hccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHc
Q 037504          172 ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSN  251 (396)
Q Consensus       172 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~  251 (396)
                           -|||-+|++.+                        |   .++++.++     ..+++++..+..|++++..|+..
T Consensus       227 -----gTpLlyAvrgn------------------------h---vkcve~Ll-----~sGAd~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  227 -----GTPLLYAVRGN------------------------H---VKCVESLL-----NSGADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             -----CceeeeeecCC------------------------h---HHHHHHHH-----hcCCCcccccccCCcHHHHHHHh
Confidence                 89999999988                        3   55666555     46899999999999999999999


Q ss_pred             CcHHHHHHHHhhccccccccccccCCCCchhh
Q 037504          252 RMREIFKFIFEISSVADLLFDSKDKDGNNILH  283 (396)
Q Consensus       252 ~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh  283 (396)
                      |.. +|+..+++-++    .+.+|..-.||+|
T Consensus       270 Gyr-~Vqqvie~h~l----kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  270 GYR-IVQQVIEKHAL----KLCQDSEKRTPLH  296 (296)
T ss_pred             hhH-HHHHHHHHHHH----HHhhcccCCCCCC
Confidence            987 88888887777    6788999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=210.24  Aligned_cols=284  Identities=18%  Similarity=0.170  Sum_probs=206.9

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||-+.+++++.++++++ +|..|.+||.+|+..|+..+|..|++. .++++...|..++|+|-+||..|+.++|++||..
T Consensus       768 gh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~  846 (2131)
T KOG4369|consen  768 GHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA  846 (2131)
T ss_pred             ccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCCCcchHHHHHHHh
Confidence            68888999999988877 789999999999999999999999975 7888888899999999999999999999999999


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCC-
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSL-  158 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~-  158 (396)
                      |  ++-  ..++....|||.+|...|.+++++.|+..|+.++. ..-.+.|-.||++|..+|+.+.++.|++.+. .+. 
T Consensus       847 g--ank--ehrnvsDytPlsla~Sggy~~iI~~llS~GseInS-rtgSklgisPLmlatmngh~~at~~ll~~gsdiNaq  921 (2131)
T KOG4369|consen  847 G--ANK--EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINS-RTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQ  921 (2131)
T ss_pred             h--ccc--cccchhhcCchhhhcCcchHHHHHHHhhccccccc-ccccccCcchhhhhhhccccHHHHHHhcccchhccc
Confidence            8  554  67788889999999999999999999999988653 2334578899999999999999999999887 211 


Q ss_pred             CCcchhHHHHHHh--------------------hccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHH
Q 037504          159 KDDDCIELLVKLI--------------------ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL  218 (396)
Q Consensus       159 ~~~~g~~~l~~~~--------------------~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (396)
                      ...+.++.|-.++                    ....|.|||+-++..|                           .+++
T Consensus       922 IeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgG---------------------------yvdv  974 (2131)
T KOG4369|consen  922 IETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGG---------------------------YVDV  974 (2131)
T ss_pred             cccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCC---------------------------cccc
Confidence            1222211111110                    1122344444444444                           1222


Q ss_pred             HHHHHHHHHHhCCccccccc--CCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccc
Q 037504          219 VELLWENFLFKYPDLIWKFD--ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI  296 (396)
Q Consensus       219 ~~~ll~~ll~~~~~~i~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~  296 (396)
                      =+.|     ...+++.|..-  ..-.|+|-+++..|+.++|+.|+...+.    +..++++|+|+|.+|+..|+...+.+
T Consensus       975 g~~l-----i~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at----v~v~NkkG~T~Lwla~~Gg~lss~~i 1045 (2131)
T KOG4369|consen  975 GNLL-----IAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT----VRVPNKKGCTVLWLASAGGALSSCPI 1045 (2131)
T ss_pred             chhh-----hhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc----eecccCCCCcccchhccCCccccchH
Confidence            2222     23344444332  2334556666666666666666655555    66789999999999999999888877


Q ss_pred             ccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHH-HhHHHHH
Q 037504          297 VSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIK-EHEELKK  346 (396)
Q Consensus       297 l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~-~~~~~~~  346 (396)
                      |                   +.+++|++..|+.-.|++..|.+ .|.++++
T Consensus      1046 l-------------------~~~~ad~d~qdnr~~S~~maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1046 L-------------------VSSVADADQQDNRTNSRTMAAFRKGHFAIVK 1077 (2131)
T ss_pred             H-------------------hhcccChhhhhcccccccHHHHHhchhheec
Confidence            7                   67888999999888888887654 4445444

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=9e-23  Score=207.43  Aligned_cols=240  Identities=19%  Similarity=0.152  Sum_probs=161.2

Q ss_pred             CCCcccccccc--CCCcc-cccccchHHH-HHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 037504            3 HSAPLELHVYS--NPPVE-EIRTRRLKLY-RVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLV   78 (396)
Q Consensus         3 h~~~~~~~~~~--~~~~~-~~~~g~t~Lh-~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll   78 (396)
                      +.+.++.++..  +.+.. .|..|.|||| .|+..++.++++.|++. +.    . +..|.||||.|+.. ..+.++.++
T Consensus        29 ~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~-~~~G~T~Lh~A~~~-~~~~v~~ll  101 (743)
T TIGR00870        29 DLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----R-GAVGDTLLHAISLE-YVDAVEAIL  101 (743)
T ss_pred             CHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----C-CCcChHHHHHHHhc-cHHHHHHHH
Confidence            34455555555  33333 5788999999 78888888888888765 54    3 78899999999873 333333333


Q ss_pred             HHhhh--cc------c-c-hhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccC-----------CCCCCCcHHHH
Q 037504           79 KKMKA--EN------L-D-LAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQ-----------DDKDRMLPIVG  137 (396)
Q Consensus        79 ~~~~~--~~------~-d-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~-----------~d~~g~tpLh~  137 (396)
                      .....  .+      + + ....+..|.||||+|+..|+.++|++|+++|++++....           ....|.||||.
T Consensus       102 ~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~  181 (743)
T TIGR00870       102 LHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNA  181 (743)
T ss_pred             HHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHH
Confidence            32200  11      0 0 012235799999999999999999999999999763211           12368999999


Q ss_pred             HHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH-HH
Q 037504          138 AASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE-RA  215 (396)
Q Consensus       138 A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  215 (396)
                      |+..|+.+++++|++.++ .+..+..|             +||||+|+..+....                .   .. ..
T Consensus       182 Aa~~~~~~iv~lLl~~gadin~~d~~g-------------~T~Lh~A~~~~~~~~----------------~---~~~l~  229 (743)
T TIGR00870       182 AACLGSPSIVALLSEDPADILTADSLG-------------NTLLHLLVMENEFKA----------------E---YEELS  229 (743)
T ss_pred             HHHhCCHHHHHHHhcCCcchhhHhhhh-------------hHHHHHHHhhhhhhH----------------H---HHHHH
Confidence            999999999999999997 44455566             899999888651100                0   00 01


Q ss_pred             HHHHHHHHHHHHHhCCccc----ccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhc
Q 037504          216 LELVELLWENFLFKYPDLI----WKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK  287 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~  287 (396)
                      ..+.+.+++. +. .....    +..|.+|.||||+|+..|+.+++++|++.+..    ........+.|.+++..
T Consensus       230 ~~~~~~l~~l-l~-~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~----~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       230 CQMYNFALSL-LD-KLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK----QKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHHH-Hh-ccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh----cceeeccCcchHhHhhh
Confidence            1122222221 11 11222    56789999999999999999999999997766    33445566777776654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=167.41  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=64.7

Q ss_pred             ccccccccCCCCchHHHHHHHcCCH----HHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHH---HHHHHHhcCC
Q 037504           47 KDEIGDVITRLGDTALHVAAAANRI----DFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVE---LVKATMEGNE  119 (396)
Q Consensus        47 ~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~---~v~~Ll~~g~  119 (396)
                      +.+++.. +.++.++||.||+.|+.    +++++|++.+  ..+  +.+|..|+||||+|+..|+.+   ++++|+++|+
T Consensus        10 ~~~~~~~-~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g--~~~--~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga   84 (166)
T PHA02743         10 NLGAVEI-DEDEQNTFLRICRTGNIYELMEVAPFISGDG--HLL--HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA   84 (166)
T ss_pred             chHHhhh-ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc--hhh--hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC
Confidence            4555555 56677777777777776    4444555555  444  667777777777777776644   3677777777


Q ss_pred             CCccccCCC-CCCCcHHHHHHhcCCHHHHHHHHh
Q 037504          120 DITMVPQDD-KDRMLPIVGAASLGHTEVVEFLYR  152 (396)
Q Consensus       120 ~~~~~~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~  152 (396)
                      +   ++.+| ..|.||||+|+..++.+++++|++
T Consensus        85 d---in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         85 D---INARELGTGNTLLHIAASTKNYELAEWLCR  115 (166)
T ss_pred             C---CCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            7   34444 367777777777777777777763

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=167.73  Aligned_cols=130  Identities=16%  Similarity=0.134  Sum_probs=115.7

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHh-----CccccccccCCCCchHHHHHHHcCC----HHHHHHHHHHhhhcccch
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDE-----HKDEIGDVITRLGDTALHVAAAANR----IDFVKKLVKKMKAENLDL   88 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~-----~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~d~   88 (396)
                      .++..|.||||+|++.|+.++++.|+..     .+++++.+ |..|+||||+|+..|+    .+++++|++.|  +++  
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g--adi--   90 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIELG--ADI--   90 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHcC--CCC--
Confidence            4577899999999999999999988642     36788888 8999999999999999    58899999988  776  


Q ss_pred             hcccC-CCCcHHHHHHHcCCHHHHHHHHh-cCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           89 AKRNR-IGCTALFYAAASGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        89 ~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +.+|. .|.||||+|+..++.+++++|++ .|++   ++.+|..|+||||+|+..++.+++++|++.++
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            88885 89999999999999999999997 5888   55567799999999999999999999999876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=5.2e-23  Score=177.74  Aligned_cols=159  Identities=22%  Similarity=0.265  Sum_probs=105.1

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc-----CCHHHHHHHHhhcccCCCCcch
Q 037504           89 AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL-----GHTEVVEFLYRETKNSLKDDDC  163 (396)
Q Consensus        89 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~-----~~~~~v~~Ll~~~~~~~~~~~g  163 (396)
                      |..|.+|+|+||||+..+++++|+.|++.|..-  ++.+++-|+||+++++..     .+.++|..|...|..+.+... 
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~--VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ-  338 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCD--VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQ-  338 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCccc--ccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhh-
Confidence            455666666666666666666666666665432  555555666666665542     345566666666553332211 


Q ss_pred             hHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCc
Q 037504          164 IELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHT  243 (396)
Q Consensus       164 ~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t  243 (396)
                                 .|+|+|++|+.+|                           ..++++.|+     .+++++|.+|.+|.|
T Consensus       339 -----------~gQTALMLAVSHG---------------------------r~d~vk~LL-----acgAdVNiQDdDGST  375 (452)
T KOG0514|consen  339 -----------HGQTALMLAVSHG---------------------------RVDMVKALL-----ACGADVNIQDDDGST  375 (452)
T ss_pred             -----------hcchhhhhhhhcC---------------------------cHHHHHHHH-----HccCCCccccCCccH
Confidence                       1256666666666                           345554443     467788888899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhh-ccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          244 IFHIAVSNRMREIFKFIFEI-SSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       244 ~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      +|++|+.+|+.|++++||.. ++|    +-..|.+|-|+|.+|...|+.||.-+|
T Consensus       376 ALMCA~EHGhkEivklLLA~p~cd----~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  376 ALMCAAEHGHKEIVKLLLAVPSCD----ISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             HHhhhhhhChHHHHHHHhccCccc----ceeecCCCchhhhhHHhcCchHHHHHH
Confidence            99999999999999988865 444    667888899999999999988876555

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=6.3e-22  Score=163.13  Aligned_cols=128  Identities=16%  Similarity=0.119  Sum_probs=111.2

Q ss_pred             cccccchHHHHHHHcCCHHHHH----HHHHhCccccccccCCCCchHHHHHHHcCCHHH---HHHHHHHhhhcccchhcc
Q 037504           19 EIRTRRLKLYRVALNGDWARAK----VIYDEHKDEIGDVITRLGDTALHVAAAANRIDF---VKKLVKKMKAENLDLAKR   91 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~----~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~~~d~~~~   91 (396)
                      .+..+.++||.||+.|+.+.++    .|+ ..+.+++.. |..|+||||+|+..|+.+.   +++|++.|  +++  +.+
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G--adi--n~~   89 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMG--ADI--NAR   89 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcC--CCC--CCC
Confidence            4567788999999999985544    444 458888877 8999999999999998654   88999998  777  888


Q ss_pred             c-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           92 N-RIGCTALFYAAASGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        92 d-~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      | ..|.||||+|+..|+.+++++|++ .|++   +..+|..|.||||+|+..++.+++++|++.++
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8 589999999999999999999995 7998   55567799999999999999999999999998

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=161.10  Aligned_cols=132  Identities=16%  Similarity=0.239  Sum_probs=110.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHh--hhcccchhcccCCCCcHHHHHHHcCC----HHHHHHHHhcCCCCccccCCC
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKM--KAENLDLAKRNRIGCTALFYAAASGS----VELVKATMEGNEDITMVPQDD  128 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~d~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~~~~~~~~~d  128 (396)
                      +..|.||||+|++.|+.++++.|+...  .....+++.+|..|.||||+|+..|+    .+++++|++.|++   ++.++
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---in~~~   94 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---INAQE   94 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---CCCCC
Confidence            788999999999999999999987532  00123348999999999999999998    5899999999999   45555


Q ss_pred             C-CCCcHHHHHHhcCCHHHHHHHHhh-cccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhcc
Q 037504          129 K-DRMLPIVGAASLGHTEVVEFLYRE-TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG  206 (396)
Q Consensus       129 ~-~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~  206 (396)
                      . .|+||||+|+..++.+++++|+.. ++                                                   
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~---------------------------------------------------  123 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGI---------------------------------------------------  123 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------------------------------------------------
Confidence            3 899999999999999999999863 32                                                   


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccc
Q 037504          207 AKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       207 ~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  266 (396)
                                                +++.+|.+|+||||+|+..++.+++++|++.++.
T Consensus       124 --------------------------~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        124 --------------------------DLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             --------------------------CCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                      3456678899999999999999999999988765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=6.9e-22  Score=170.81  Aligned_cols=163  Identities=26%  Similarity=0.301  Sum_probs=124.2

Q ss_pred             cccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH-----cCCHHHHHHHHhcCCCCccc
Q 037504           50 IGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA-----SGSVELVKATMEGNEDITMV  124 (396)
Q Consensus        50 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~-----~g~~~~v~~Ll~~g~~~~~~  124 (396)
                      +|.. |.+|+|+||||+.++++++|+.||+.|   -.|++.+|+.|+||+++|+.     ..+.++|..|..-| +++.-
T Consensus       261 VNla-DsNGNTALHYsVSHaNF~VV~~LLDSg---vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK  335 (452)
T KOG0514|consen  261 VNLA-DSNGNTALHYAVSHANFDVVSILLDSG---VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK  335 (452)
T ss_pred             hhhh-cCCCCeeeeeeecccchHHHHHHhccC---cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh
Confidence            3445 788888888888888888888888876   33458888888888888764     24567777777765 43433


Q ss_pred             cCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhh
Q 037504          125 PQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYF  203 (396)
Q Consensus       125 ~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~  203 (396)
                      ..+  .|+|+|++|+.+|+.++|+.||.+++ .++.|.+|             .|+|++|+++|                
T Consensus       336 AsQ--~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDG-------------STALMCA~EHG----------------  384 (452)
T KOG0514|consen  336 ASQ--HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDG-------------STALMCAAEHG----------------  384 (452)
T ss_pred             hhh--hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCc-------------cHHHhhhhhhC----------------
Confidence            333  78888888888888888888888888 77777777             78888888888                


Q ss_pred             hccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhh
Q 037504          204 NLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI  263 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  263 (396)
                              |   .++++.|+    ....+++...|.+|.|+|.+|...|+.+|.-+|..+
T Consensus       385 --------h---kEivklLL----A~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  385 --------H---KEIVKLLL----AVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             --------h---HHHHHHHh----ccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence                    2   45554443    456778888999999999999999999998888654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.86  E-value=1.5e-22  Score=195.91  Aligned_cols=263  Identities=17%  Similarity=0.129  Sum_probs=211.6

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhc-ccCCCCcH
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAK-RNRIGCTA   98 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~-~d~~g~tp   98 (396)
                      ..+-.|+|-.||..|+.|+|+.|+.+ |+++..+ |+.|.+||.+|+-.||..+|+.|+...  +++  +. .|+.+.|+
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~r-ganiehr-dkkgf~plImaatagh~tvV~~llk~h--a~v--eaQsdrtkdt~  827 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVR-GANIEHR-DKKGFVPLIMAATAGHITVVQDLLKAH--ADV--EAQSDRTKDTM  827 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHh-ccccccc-ccccchhhhhhcccCchHHHHHHHhhh--hhh--hhhcccccCce
Confidence            33457899999999999999999976 8999888 999999999999999999999999986  555  54 57889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCC--CCcchhHHHHHHhhccc
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSL--KDDDCIELLVKLIETDS  175 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~--~~~~g~~~l~~~~~~~~  175 (396)
                      |.+||..|+.++|++||..|++   -..++-...|||-+|...|+.+++..|+..|. .+.  -.+-|            
T Consensus       828 lSlacsggr~~vvelLl~~gan---kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklg------------  892 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGAN---KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLG------------  892 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhcc---ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccC------------
Confidence            9999999999999999999998   44555688999999999999999999999997 222  11223            


Q ss_pred             hhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccc-cCCCCcHHHHHHHcCcH
Q 037504          176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF-DENGHTIFHIAVSNRMR  254 (396)
Q Consensus       176 ~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~-d~~g~t~Lh~A~~~~~~  254 (396)
                       -.||.+|..+|                        |...   ++.+     ...+.+||.. ..+-+|+|-+|+..|..
T Consensus       893 -isPLmlatmng------------------------h~~a---t~~l-----l~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  893 -ISPLMLATMNG------------------------HQAA---TLSL-----LQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             -cchhhhhhhcc------------------------ccHH---HHHH-----hcccchhccccccccccceeeccccCcc
Confidence             78999999999                        3222   2222     2346666654 45677888888888888


Q ss_pred             HHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccccc---------------chhHhHHHHHHHHHHHhhhcc
Q 037504          255 EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVS---------------VAALQLQRELLWFQEVKKVVP  319 (396)
Q Consensus       255 ~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~---------------~~~~~~~~~l~~~~~v~~l~~  319 (396)
                      +++.+||.+.++    +..+-+.|.|||.-++..|.+++=.+|.               ++++.+.++-++.+.|..++.
T Consensus       940 evv~lLLa~~an----vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen  940 EVVFLLLAAQAN----VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred             hHHHHHHHHhhh----hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC
Confidence            888888888777    6778888888888888888887776662               245555666666777777775


Q ss_pred             -hhhhhhhcCCCCCchhhHHHH
Q 037504          320 -RKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       320 -~~~~~~~~~~g~tpl~~a~~~  340 (396)
                       .+-+..+|++|.|+|.+|+..
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~~G 1037 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLASAG 1037 (2131)
T ss_pred             CccceecccCCCCcccchhccC
Confidence             478999999999999998754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=8.9e-22  Score=160.76  Aligned_cols=130  Identities=15%  Similarity=0.125  Sum_probs=106.4

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHH----hCccccccccCCCCchHHHHHHHcCCH---HHHHHHHHHhhhcccchhc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYD----EHKDEIGDVITRLGDTALHVAAAANRI---DFVKKLVKKMKAENLDLAK   90 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~d~~~   90 (396)
                      ..+..|.||||+|++.|+...+..+..    ..+..++.. |.+|.||||+|+..|+.   +++++|++.|  +++  +.
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g--adi--n~   86 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWG--ADI--NG   86 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcC--CCc--cc
Confidence            357789999999999998533221111    112223445 88999999999999987   4688999998  776  88


Q ss_pred             cc-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           91 RN-RIGCTALFYAAASGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        91 ~d-~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +| ..|.||||+|+..|+.+++++|++ .|++   ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88 489999999999999999999998 4888   55667799999999999999999999999886

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=158.38  Aligned_cols=132  Identities=14%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcc---cchhcccCCCCcHHHHHHHcCCH---HHHHHHHhcCCCCccccCCC
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAEN---LDLAKRNRIGCTALFYAAASGSV---ELVKATMEGNEDITMVPQDD  128 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~d~~~~d~~g~tpLh~A~~~g~~---~~v~~Ll~~g~~~~~~~~~d  128 (396)
                      |.+|.||||+|++.|+.  +.++...+...+   ..++.+|.+|.||||+|+..|+.   +++++|++.|++   ++.+|
T Consensus        14 d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---in~~~   88 (154)
T PHA02736         14 DIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---INGKE   88 (154)
T ss_pred             CCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC---ccccC
Confidence            78899999999999984  344333321011   11356789999999999999987   468999999999   55555


Q ss_pred             -CCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccc
Q 037504          129 -KDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGA  207 (396)
Q Consensus       129 -~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~  207 (396)
                       ..|.||||+|+..++.+++++|+...                                                     
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~-----------------------------------------------------  115 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQP-----------------------------------------------------  115 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCC-----------------------------------------------------
Confidence             48999999999999999999998631                                                     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcccc
Q 037504          208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA  267 (396)
Q Consensus       208 ~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  267 (396)
                                             +.+++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       116 -----------------------g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        116 -----------------------GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             -----------------------CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                                   2235667889999999999999999999999999984

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.2e-20  Score=167.37  Aligned_cols=151  Identities=12%  Similarity=0.095  Sum_probs=92.6

Q ss_pred             CCCCchH-HHHHHHcCCHHHHHHHHHHhhhcccchhcc----cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCC-C
Q 037504           55 TRLGDTA-LHVAAAANRIDFVKKLVKKMKAENLDLAKR----NRIGCTALFYAAASGSVELVKATMEGNEDITMVPQD-D  128 (396)
Q Consensus        55 ~~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-d  128 (396)
                      |..|.|+ ||.|+..|+.+++++|++.|  +++  +.+    +..|.||||+|+..++.+++++|+++|++++   .+ +
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~G--Adi--N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN---~~~~  101 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLG--ADP--EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN---RYAE  101 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCC--CCc--cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC---cccC
Confidence            4444443 45555566777777777776  555  554    3467777777777777777777777777633   22 2


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccc
Q 037504          129 KDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGA  207 (396)
Q Consensus       129 ~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~  207 (396)
                      ..|.||||+|+..++.+++++|++.|+ .+..+..|             .||||+|++.+.                   
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G-------------~TpL~~A~~~~~-------------------  149 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDM-------------VTPIELALMICN-------------------  149 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-------------CCHHHHHHHhCC-------------------
Confidence            356777777777777777777777766 44455555             667777666541                   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcc
Q 037504          208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS  265 (396)
Q Consensus       208 ~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  265 (396)
                              .+++. ++      .+.   ..+..+.+|++++   ++.+++++|++++.
T Consensus       150 --------~~~~~-~~------~~~---~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        150 --------NFLAF-MI------CDN---EISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             --------hhHHH-Hh------cCC---cccccccChhhhh---ccHHHHHHHHHHHH
Confidence                    11111 10      111   2356677788865   46788899988876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=3.8e-20  Score=143.92  Aligned_cols=142  Identities=22%  Similarity=0.245  Sum_probs=121.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      -.+.+|+..+....|+.||+.....+|.+ |.+|.||||-|+++|+.+||+.|+..|  ++.  +.+...|+||||-||.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~~g--An~--~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLLSG--ANK--EAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHHHHHHcc--CCc--ccccccCccchhhhhc
Confidence            35679999999999999999988888988 999999999999999999999999998  777  9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCC-HHHHHHHHhhcc--cCCCCcchhHHHHHHhhccchhhHHH
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH-TEVVEFLYRETK--NSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~-~~~v~~Ll~~~~--~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      .++.+++-.|+++|+|   ++......+||||+|+...+ ...+.+|+....  .......+             .||+.
T Consensus       140 WnN~~va~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~e-------------eta~~  203 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLE-------------ETAFD  203 (228)
T ss_pred             ccchhHHHHHHhccCc---ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCcc-------------chHHH
Confidence            9999999999999999   55566678999999998765 456677766554  23333444             78888


Q ss_pred             HHHhcC
Q 037504          182 VLARKN  187 (396)
Q Consensus       182 ~a~~~~  187 (396)
                      +|.+.+
T Consensus       204 iARRT~  209 (228)
T KOG0512|consen  204 IARRTS  209 (228)
T ss_pred             HHHHhh
Confidence            887765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=1.8e-20  Score=145.75  Aligned_cols=143  Identities=20%  Similarity=0.105  Sum_probs=117.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchh
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE  177 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~  177 (396)
                      -+-||+..+.+.-|+.|++..++.  ++.+|.+|.||||.|+.+|+.++++.|+..++                      
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~--vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA----------------------  121 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANH--VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA----------------------  121 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccc--ccccccccccHHHHHHhcCchHHHHHHHHccC----------------------
Confidence            467889999999999999888875  88889999999999999999999998887665                      


Q ss_pred             hHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHH
Q 037504          178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIF  257 (396)
Q Consensus       178 t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v  257 (396)
                                                                             +.+.+...|+||||.||..++.+++
T Consensus       122 -------------------------------------------------------n~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen  122 -------------------------------------------------------NKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             -------------------------------------------------------CcccccccCccchhhhhcccchhHH
Confidence                                                                   2445677899999999999999999


Q ss_pred             HHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhH
Q 037504          258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLF  337 (396)
Q Consensus       258 ~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a  337 (396)
                      .+|+.+|+|    ||+..+...||||+||...+......+                 -......++..++..+.||+++|
T Consensus       147 ~~LLqhgaD----VnA~t~g~ltpLhlaa~~rn~r~t~~~-----------------Ll~dryi~pg~~nn~eeta~~iA  205 (228)
T KOG0512|consen  147 GRLLQHGAD----VNAQTKGLLTPLHLAAGNRNSRDTLEL-----------------LLHDRYIHPGLKNNLEETAFDIA  205 (228)
T ss_pred             HHHHhccCc----ccccccccchhhHHhhcccchHHHHHH-----------------HhhccccChhhhcCccchHHHHH
Confidence            999999999    899999999999999988764322111                 00224567788999999999999


Q ss_pred             HHH
Q 037504          338 IKE  340 (396)
Q Consensus       338 ~~~  340 (396)
                      .+.
T Consensus       206 RRT  208 (228)
T KOG0512|consen  206 RRT  208 (228)
T ss_pred             HHh
Confidence            764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=7e-20  Score=162.50  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=107.5

Q ss_pred             hcccCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCccccC-CCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCC-Ccchh
Q 037504           89 AKRNRIGCT-ALFYAAASGSVELVKATMEGNEDITMVPQ-DDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLK-DDDCI  164 (396)
Q Consensus        89 ~~~d~~g~t-pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~-~~~g~  164 (396)
                      ..+|..|.| +||.|++.|+.+++++|+++|++++.... .|..|.||||+|+..++.+++++|+++|+ .+.. +..| 
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g-  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK-  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC-
Confidence            556777776 45666777889999999999998553221 24579999999999999999999999888 3332 2345 


Q ss_pred             HHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcH
Q 037504          165 ELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTI  244 (396)
Q Consensus       165 ~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~  244 (396)
                                  .||||+|+..+                           ..++++.++     ..+++++.+|..|.||
T Consensus       105 ------------~TpLh~Aa~~~---------------------------~~eivklLL-----~~GAdin~kd~~G~Tp  140 (300)
T PHA02884        105 ------------ITPLYISVLHG---------------------------CLKCLEILL-----SYGADINIQTNDMVTP  140 (300)
T ss_pred             ------------CCHHHHHHHcC---------------------------CHHHHHHHH-----HCCCCCCCCCCCCCCH
Confidence                        78888888777                           355555554     4577888888888888


Q ss_pred             HHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          245 FHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       245 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ||+|++.++.+++..+..  .       ..+..+.+|++++   ++.+++++|
T Consensus       141 L~~A~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~---~n~ei~~~L  181 (300)
T PHA02884        141 IELALMICNNFLAFMICD--N-------EISNFYKHPKKIL---INFDILKIL  181 (300)
T ss_pred             HHHHHHhCChhHHHHhcC--C-------cccccccChhhhh---ccHHHHHHH
Confidence            888888777777655542  2       1356677788765   245555554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=3.1e-20  Score=168.80  Aligned_cols=204  Identities=20%  Similarity=0.196  Sum_probs=156.6

Q ss_pred             CcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCC
Q 037504           16 PVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIG   95 (396)
Q Consensus        16 ~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g   95 (396)
                      +...+.+|.|+||.++...+.++|+++++. +++||.. |..|+||||.|+..|+..++++|+..|  +++  -..|.+|
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~-d~e~wtPlhaaascg~~~i~~~li~~g--A~~--~avNsdg  139 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQ-DNEGWTPLHAAASCGYLNIVEYLIQHG--ANL--LAVNSDG  139 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHh-cCCcccc-ccccCCcchhhcccccHHHHHHHHHhh--hhh--hhccCCC
Confidence            355688899999999999999999999986 9999999 999999999999999999999999999  777  8889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCCcHHHHHHhcCC---HHHHHHHHhhcc-cCCCCcchhHHHHHH
Q 037504           96 CTALFYAAASGSVELVKATMEG-NEDITMVPQDDKDRMLPIVGAASLGH---TEVVEFLYRETK-NSLKDDDCIELLVKL  170 (396)
Q Consensus        96 ~tpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~tpLh~A~~~~~---~~~v~~Ll~~~~-~~~~~~~g~~~l~~~  170 (396)
                      ..|+-.+...-..+++..-... |.++              -.+-....   .+-+...+..|. .+.....|       
T Consensus       140 ~~P~dl~e~ea~~~~l~~~~~r~gi~i--------------ea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG-------  198 (527)
T KOG0505|consen  140 NMPYDLAEDEATLDVLETEMARQGIDI--------------EAARKAEEQTMLDDARQWLNAGAELDARHARG-------  198 (527)
T ss_pred             CCccccccCcchhHHHHHHHHHhcccH--------------HHHhhhhHHHHHHHHHHHHhcccccccccccc-------
Confidence            9998887655444444333321 2221              11111111   111223333555 44444445       


Q ss_pred             hhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHH
Q 037504          171 IETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVS  250 (396)
Q Consensus       171 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~  250 (396)
                            .|.||.|+.+|                           +.++...|+     ..+..++.+|.+|+||||.|+.
T Consensus       199 ------~T~lHvAaa~G---------------------------y~e~~~lLl-----~ag~~~~~~D~dgWtPlHAAA~  240 (527)
T KOG0505|consen  199 ------ATALHVAAANG---------------------------YTEVAALLL-----QAGYSVNIKDYDGWTPLHAAAH  240 (527)
T ss_pred             ------chHHHHHHhhh---------------------------HHHHHHHHH-----HhccCcccccccCCCcccHHHH
Confidence                  78889988888                           455555443     4577889999999999999999


Q ss_pred             cCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          251 NRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       251 ~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                      .|+.+++++|+++|++    ++.+.+.|.|||.+|...
T Consensus       241 Wg~~~~~elL~~~ga~----~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  241 WGQEDACELLVEHGAD----MDAKTKMGETPLDVADEE  274 (527)
T ss_pred             hhhHhHHHHHHHhhcc----cchhhhcCCCCccchhhh
Confidence            9999999999999999    788999999999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=3.7e-20  Score=155.49  Aligned_cols=66  Identities=24%  Similarity=0.372  Sum_probs=46.9

Q ss_pred             chhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           87 DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        87 d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |+|.-|..|.+||||||+.|+..+++.|+.+|+.+   +..+.-..||||+|+..|+.++|+.|++..+
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarv---n~tnmgddtplhlaaahghrdivqkll~~ka   91 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV---NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA   91 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhccccc---ccccCCCCcchhhhhhcccHHHHHHHHHHhc
Confidence            44777777777777777777777777777777774   3334455677777777777777777776544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=7.3e-18  Score=124.06  Aligned_cols=85  Identities=34%  Similarity=0.518  Sum_probs=65.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcC
Q 037504           27 LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASG  106 (396)
Q Consensus        27 Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g  106 (396)
                      ||+|++.|+.++++.|++. +.+++.     |+||||+|+..|+.+++++|++.|  +++  +.+|..|+||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL-----GNTALHYAAENGNLEIVKLLLENG--ADI--NSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTT--TCT--T-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhc--ccc--cccCCCCCCHHHHHHHcC
Confidence            6888888888888888874 554432     778888888888888888888877  665  778888888888888888


Q ss_pred             CHHHHHHHHhcCCCC
Q 037504          107 SVELVKATMEGNEDI  121 (396)
Q Consensus       107 ~~~~v~~Ll~~g~~~  121 (396)
                      +.+++++|+++|+++
T Consensus        71 ~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   71 NLEIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHHHTTT-T
T ss_pred             CHHHHHHHHHcCCCC
Confidence            888888888888874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.4e-17  Score=129.40  Aligned_cols=123  Identities=32%  Similarity=0.428  Sum_probs=111.3

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHH
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL   99 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpL   99 (396)
                      +..|.||||.|+..|+.++++.|++. +.+.+.. +..|.||||+|+..++.+++++|++.+  ..+  +..+..|.||+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~--~~~~~~~~~~l   77 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKG--ADV--NARDKDGNTPL   77 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCc--cccCCCCCCHH
Confidence            46799999999999999999999975 6666666 889999999999999999999999998  655  88889999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 037504          100 FYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY  151 (396)
Q Consensus       100 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll  151 (396)
                      |+|+..++.+++++|++++.+   ++..|..|.||+++|...++.+++++|+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999977   5556778999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=2.7e-18  Score=144.34  Aligned_cols=113  Identities=23%  Similarity=0.256  Sum_probs=90.6

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCC
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGC   96 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~   96 (396)
                      ...|+.|.+|||+||+.|+..+|+.||.+ |+.+|.. +....||||+|+..||-++|+.|++..  +++  |..|..|+
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~r-garvn~t-nmgddtplhlaaahghrdivqkll~~k--adv--navnehgn  101 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSRK--ADV--NAVNEHGN  101 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhc-ccccccc-cCCCCcchhhhhhcccHHHHHHHHHHh--ccc--chhhccCC
Confidence            33566788888888888888888888875 8888877 777788888888888888888888876  666  88888888


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH
Q 037504           97 TALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA  138 (396)
Q Consensus        97 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A  138 (396)
                      |||||||..|.-.+++-|+..|+.++ +.  +++|.|||.-|
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~-ic--nk~g~tpldka  140 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVN-IC--NKKGMTPLDKA  140 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceee-ec--ccCCCCchhhh
Confidence            88888888888888888888888754 33  33788888766

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=2.6e-17  Score=121.09  Aligned_cols=83  Identities=34%  Similarity=0.505  Sum_probs=76.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc
Q 037504           62 LHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL  141 (396)
Q Consensus        62 Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~  141 (396)
                      ||+|++.|+.+++++|++.+  .++  +.    |+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~--~~~--~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG--ADI--NL----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT--STT--TS----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCc--CCC--CC----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHc
Confidence            79999999999999999987  666  33    89999999999999999999999999   556677999999999999


Q ss_pred             CCHHHHHHHHhhcc
Q 037504          142 GHTEVVEFLYRETK  155 (396)
Q Consensus       142 ~~~~~v~~Ll~~~~  155 (396)
                      |+.+++++|+++|+
T Consensus        70 ~~~~~~~~Ll~~g~   83 (89)
T PF12796_consen   70 GNLEIVKLLLEHGA   83 (89)
T ss_dssp             THHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHcCC
Confidence            99999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=1.9e-17  Score=158.00  Aligned_cols=205  Identities=21%  Similarity=0.242  Sum_probs=131.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhC--------ccccccccCCCCchHHHHHHHc---CCHHHHHHHHHHhhhcccchh---
Q 037504           24 RLKLYRVALNGDWARAKVIYDEH--------KDEIGDVITRLGDTALHVAAAA---NRIDFVKKLVKKMKAENLDLA---   89 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~--------~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~d~~---   89 (396)
                      +.++..|...+..+.+..++...        -.+++.+ ...|.|+||.|..+   ++.++++.|++..  +.+ +|   
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~--p~l-ind~~  177 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIF--PKL-INDIY  177 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHh--HHH-hhhhh
Confidence            37888888888888887777542        1455555 67899999999874   5568999999876  333 12   


Q ss_pred             -cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc------CCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcc
Q 037504           90 -KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVP------QDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDD  162 (396)
Q Consensus        90 -~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~  162 (396)
                       .....|+||||+|+.+.+.++|++|++.|||++...      ..|..+.                       ....+..
T Consensus       178 ~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~-----------------------rk~T~Y~  234 (782)
T KOG3676|consen  178 TSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKAS-----------------------RKSTNYT  234 (782)
T ss_pred             hhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccccccc-----------------------ccccCCc
Confidence             234679999999999999999999999999954210      0010000                       0000001


Q ss_pred             hhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCC
Q 037504          163 CIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH  242 (396)
Q Consensus       163 g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~  242 (396)
                      |        .-..|+.||.+||-.+                           ..++++.+++     ++++++.+|..|+
T Consensus       235 G--------~~YfGEyPLSfAAC~n---------------------------q~eivrlLl~-----~gAd~~aqDS~GN  274 (782)
T KOG3676|consen  235 G--------YFYFGEYPLSFAACTN---------------------------QPEIVRLLLA-----HGADPNAQDSNGN  274 (782)
T ss_pred             c--------eeeeccCchHHHHHcC---------------------------CHHHHHHHHh-----cCCCCCccccCCC
Confidence            1        0011255555555443                           2444444432     4566777777777


Q ss_pred             cHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          243 TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       243 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      |.||..+.+-..++..+++++|+..  +...+|+.|-|||-+|++.|..++.+.+
T Consensus       275 TVLH~lVi~~~~~My~~~L~~ga~~--l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  275 TVLHMLVIHFVTEMYDLALELGANA--LEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCc--cccccccCCCChHHHHHHhhhHHHHHHH
Confidence            7777777776677777777777762  2445677777777777777776665544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-16  Score=151.36  Aligned_cols=130  Identities=21%  Similarity=0.216  Sum_probs=110.3

Q ss_pred             cccccchHHHHHHHc---CCHHHHHHHHHhCcccccccc---CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcc-
Q 037504           19 EIRTRRLKLYRVALN---GDWARAKVIYDEHKDEIGDVI---TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKR-   91 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~~---~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~-   91 (396)
                      +...|.|.||.|..+   ++.++++.||+..+..+|..-   ...|.||||+|+.+.+.++|++|++.|  +++  +.+ 
T Consensus       139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~g--ADV--~aRa  214 (782)
T KOG3676|consen  139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAG--ADV--HARA  214 (782)
T ss_pred             ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcC--Cch--hhHh
Confidence            477899999999874   456889999998876665432   366999999999999999999999998  666  331 


Q ss_pred             ----------------------cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHH
Q 037504           92 ----------------------NRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF  149 (396)
Q Consensus        92 ----------------------d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~  149 (396)
                                            -..|..||-+||..++.+|+++|+++|+|   ++.+|..|+|.||..+..-..++-.+
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd---~~aqDS~GNTVLH~lVi~~~~~My~~  291 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD---PNAQDSNGNTVLHMLVIHFVTEMYDL  291 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC---CCccccCCChHHHHHHHHHHHHHHHH
Confidence                                  12578999999999999999999999999   77889999999999999988888888


Q ss_pred             HHhhcc
Q 037504          150 LYRETK  155 (396)
Q Consensus       150 Ll~~~~  155 (396)
                      +++.++
T Consensus       292 ~L~~ga  297 (782)
T KOG3676|consen  292 ALELGA  297 (782)
T ss_pred             HHhcCC
Confidence            888876

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=4.4e-16  Score=122.12  Aligned_cols=93  Identities=33%  Similarity=0.465  Sum_probs=81.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      |..|.||||+|+..|+.+++++|++.+  ...  +.++..|.||||+|+..++.+++++|++.+++   ++..+..|.||
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~--~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~   76 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENG--ADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTP   76 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcC--CCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCH
Confidence            677999999999999999999999988  655  77888999999999999999999999999976   34445688999


Q ss_pred             HHHHHhcCCHHHHHHHHhhc
Q 037504          135 IVGAASLGHTEVVEFLYRET  154 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~  154 (396)
                      +|+|+..++.+++++|++.+
T Consensus        77 l~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcC
Confidence            99999999999999998765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=2.3e-16  Score=109.68  Aligned_cols=103  Identities=22%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      --+.+++.+|..+.|+..... |.++|..  ..|++|||+|+.+|+++++++|+..|  +++  +.+|.+|.|||--|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iG--A~i--~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI--YGGRTPLHYAADYGQLSILEFLISIG--ANI--QDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH--hCCcccchHhhhcchHHHHHHHHHhc--ccc--CCccccCCcHHHHHHH
Confidence            346789999999999999876 7888876  58999999999999999999999999  888  9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHH
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVG  137 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~  137 (396)
                      .||.+||++|++.|++-. +...  +|.+.+..
T Consensus        77 EGH~~cVklLL~~GAdrt-~~~P--dG~~~~ea  106 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRT-IHAP--DGTALIEA  106 (117)
T ss_pred             HhhHHHHHHHHHcCcccc-eeCC--CchhHHhh
Confidence            999999999999999843 4444  67665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=9.1e-15  Score=127.37  Aligned_cols=128  Identities=26%  Similarity=0.321  Sum_probs=115.1

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCC-----HHHHHHHHHHhhhc--ccchhcc
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANR-----IDFVKKLVKKMKAE--NLDLAKR   91 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~~~--~~d~~~~   91 (396)
                      .+..+.+++|.++..++.+.++.++.. +.+++.+ +..|.||||+|+..|+     .+++++|++.|  +  +. .+.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g--~~~~~-~~~~  143 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAG--ADLDV-NNLR  143 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHcC--CCCCC-cccc
Confidence            455588999999999999999888875 8888777 9999999999999999     99999999998  5  22 3677


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhc
Q 037504           92 NRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET  154 (396)
Q Consensus        92 d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~  154 (396)
                      |..|.||||+|+..|+.+++++|++.|++   +...+..|.|++++|+..++.++++.++..+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999   5555779999999999999999999999865

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=8.3e-15  Score=101.97  Aligned_cols=99  Identities=23%  Similarity=0.324  Sum_probs=86.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      --+.+++++|..+-|+..+..|  .++  |..- .|++|||+|+-.|+++++++|+..|++   ++.+|+.|-|||..|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g--~nV--n~~~-ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG--LNV--NEIY-GGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc--ccH--HHHh-CCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHH
Confidence            3467889999999999999887  555  6554 799999999999999999999999999   7888999999999999


Q ss_pred             hcCCHHHHHHHHhhcc-cCCCCcchhHH
Q 037504          140 SLGHTEVVEFLYRETK-NSLKDDDCIEL  166 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~~~-~~~~~~~g~~~  166 (396)
                      ..||.++|++|++.|+ .....++|.+.
T Consensus        76 wEGH~~cVklLL~~GAdrt~~~PdG~~~  103 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADRTIHAPDGTAL  103 (117)
T ss_pred             HHhhHHHHHHHHHcCcccceeCCCchhH
Confidence            9999999999999999 66677787443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.3e-13  Score=120.12  Aligned_cols=95  Identities=28%  Similarity=0.348  Sum_probs=79.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCC-----HHHHHHHHhcCC--CCccccCC
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGS-----VELVKATMEGNE--DITMVPQD  127 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~g~--~~~~~~~~  127 (396)
                      +..+.+++|.++..+..+++++++..+  .++  +.+|..|.||||+|+..++     .+++++|++.|+  +.  ...+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~--~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~--~~~~  143 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASG--ADV--NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV--NNLR  143 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcC--CCc--ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC--cccc
Confidence            566889999999999999888888887  665  8888999999999999988     899999999988  33  4455


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          128 DKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       128 d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |..|.||||+|+..|+.+++++|++.++
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~  171 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGA  171 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCC
Confidence            7789999999999998888888887665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=9.5e-15  Score=96.49  Aligned_cols=52  Identities=29%  Similarity=0.381  Sum_probs=33.9

Q ss_pred             CCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhh
Q 037504          230 YPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA  285 (396)
Q Consensus       230 ~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A  285 (396)
                      .+.+++.+|..|+||||+|+++|+.+++++|++.|++    ++.+|+.|+||||+|
T Consensus         5 ~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    5 GPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----CCCCcCCCCCHHHhC
Confidence            4578999999999999999999999999999999999    899999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=3.5e-14  Score=93.30  Aligned_cols=54  Identities=33%  Similarity=0.546  Sum_probs=24.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM  115 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  115 (396)
                      |+||||+|++.|+.+++++|++.+  .++  +.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~--~di--n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG--ADI--NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT--SGT--T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC--CCC--CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345555555555555555555544  333  555555555555555555555555543

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=5.7e-14  Score=127.46  Aligned_cols=120  Identities=24%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHc
Q 037504           26 KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAAS  105 (396)
Q Consensus        26 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~  105 (396)
                      .|.-|+..|.+++|+.++.+ -.|.... +..|-|+||-|+..||.+||++||+.|  +++  |..|.+|+||||+|+..
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~g--anV--Na~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGHYEIVKFLIEFG--ANV--NAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcchhHHHHHHHhcC--Ccc--cCccCCCCchhhhhhhc
Confidence            45568888999999988875 4555555 788999999999999999999999988  777  99999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH--hcCCHHHHHHHHhh
Q 037504          106 GSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA--SLGHTEVVEFLYRE  153 (396)
Q Consensus       106 g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~--~~~~~~~v~~Ll~~  153 (396)
                      +++.+++.|++.|+.+....-.  ++.|+..-+-  ..|..++.+||...
T Consensus       627 Nnv~~ckqLVe~GaavfAsTlS--DmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFASTLS--DMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             CchHHHHHHHhccceEEeeecc--cccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999999886433333  6777776553  45778888888643

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=9.3e-14  Score=91.28  Aligned_cols=54  Identities=39%  Similarity=0.592  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY  151 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll  151 (396)
                      |+||||+|++.|+.+++++|+++|.+   ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d---in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD---INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG---TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999999   5555789999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=1.9e-13  Score=136.35  Aligned_cols=106  Identities=21%  Similarity=0.235  Sum_probs=92.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      ..|+.|+..|+.+.++.|++. |++++.+ |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~G--adv--n~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFG--ADP--TLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCC--CCC--CCCCCCCCCHHHHHHH
Confidence            468999999999999999975 8999988 999999999999999999999999998  777  9999999999999999


Q ss_pred             cCCHHHHHHHHhc-------CCCCccccCCCCCCCcHHHHHH
Q 037504          105 SGSVELVKATMEG-------NEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus       105 ~g~~~~v~~Ll~~-------g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      .|+.+++++|+++       |++.   +..+..|.+|+..+.
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~---~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANA---KPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCC---CccccCCCCccchhh
Confidence            9999999999998       7663   334446666655443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=4.5e-13  Score=113.05  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=109.3

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchh-cccCCCCcHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA-KRNRIGCTALFY  101 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~-~~d~~g~tpLh~  101 (396)
                      -.+||..++-.|+.+.+..||+. -..+|.. |..|+|||..|+..|+.++|+.||+.|  +++  | .++..+.||||+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~~g--aDv--N~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLELG--ADV--NDKQHGTLYTPLMF   85 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHHhC--CCc--CcccccccccHHHH
Confidence            36899999999999999999986 5567888 999999999999999999999999999  777  5 456778999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          102 AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |+.+|+.++.++|++.|+....++   .-|+|+-..|+.-|+.++|..+-.+-.
T Consensus        86 AALSGn~dvcrllldaGa~~~~vN---svgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARMYLVN---SVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             HHHcCCchHHHHHHhccCcccccc---chhhhHHHHHHHhcchHHHHHHhcccc
Confidence            999999999999999999965554   369999999999999999988755443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=6.6e-14  Score=92.45  Aligned_cols=47  Identities=30%  Similarity=0.434  Sum_probs=16.9

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH
Q 037504           89 AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA  138 (396)
Q Consensus        89 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A  138 (396)
                      +.+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            55555555555555555555555555555555   333344555555544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.40  E-value=8.9e-13  Score=131.56  Aligned_cols=87  Identities=30%  Similarity=0.274  Sum_probs=81.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      +.|+.|+..|+.+.++.|++.|  +++  +.+|..|.||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G--adi--n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG--ADP--NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCC--CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHH
Confidence            3588999999999999999988  776  99999999999999999999999999999999   5667889999999999


Q ss_pred             hcCCHHHHHHHHhh
Q 037504          140 SLGHTEVVEFLYRE  153 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~  153 (396)
                      ..|+.+++++|+++
T Consensus       157 ~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        157 ENGFREVVQLLSRH  170 (664)
T ss_pred             HCCcHHHHHHHHhC
Confidence            99999999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=1.6e-12  Score=118.14  Aligned_cols=104  Identities=25%  Similarity=0.233  Sum_probs=87.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHh
Q 037504           61 ALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAAS  140 (396)
Q Consensus        61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~  140 (396)
                      .|.-|+..|.+++|+.++..-  .+.  ...|..|.|+||-|+..||.+||++||+.|++   ++..|.+||||||+|+.
T Consensus       553 LLLDaaLeGEldlVq~~i~ev--~Dp--SqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEV--TDP--SQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAAS  625 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhh--cCC--CCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhh
Confidence            345688999999999999876  454  77899999999999999999999999999999   77889999999999999


Q ss_pred             cCCHHHHHHHHhhcc-cCC-CCcchhHHHHHHh
Q 037504          141 LGHTEVVEFLYRETK-NSL-KDDDCIELLVKLI  171 (396)
Q Consensus       141 ~~~~~~v~~Ll~~~~-~~~-~~~~g~~~l~~~~  171 (396)
                      .++..+++.|++.|+ ... .-.++.|+...|-
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcc
Confidence            999999999999998 322 3345544444433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=1.5e-11  Score=104.07  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=98.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHH
Q 037504           57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIV  136 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh  136 (396)
                      .-..||..++..|..+-...||+.-  .++  |.+|..|.|||..|+..|+.++|++|++.|+|++.  .++..+.||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~v--r~v--n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~--~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTV--RQV--NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND--KQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHh--hhh--hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc--ccccccccHHH
Confidence            4578999999999999999999875  556  99999999999999999999999999999999753  45668999999


Q ss_pred             HHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcC
Q 037504          137 GAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKN  187 (396)
Q Consensus       137 ~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~  187 (396)
                      +|+..|+.++.++|++.|+ ....+.-|             +|+-.+|+..|
T Consensus        85 FAALSGn~dvcrllldaGa~~~~vNsvg-------------rTAaqmAAFVG  123 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMYLVNSVG-------------RTAAQMAAFVG  123 (396)
T ss_pred             HHHHcCCchHHHHHHhccCccccccchh-------------hhHHHHHHHhc
Confidence            9999999999999999999 44555555             88999999988

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.99  E-value=1.7e-09  Score=99.58  Aligned_cols=122  Identities=18%  Similarity=0.194  Sum_probs=104.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcC
Q 037504           27 LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASG  106 (396)
Q Consensus        27 Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g  106 (396)
                      |..|+..+++--+++.... |.++..+ +.+-.|.||+|+..|+-++|+|||+++.+ .+ ++..|..|.|+||-|+..+
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~-el-ld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPS-EL-LDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCH-HH-HHHHhhhhhHHHHHHHHhc
Confidence            6778888887666666655 5555555 88899999999999999999999999933 33 5888999999999999999


Q ss_pred             CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          107 SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       107 ~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +-.++++|++.|+.   +...|..|.||-..|-+.|+.+.+.||-++..
T Consensus       946 ~r~vc~~lvdagas---l~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             chHHHHHHHhcchh---heecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            99999999999999   66678899999999999999999999876543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.98  E-value=5.3e-10  Score=100.82  Aligned_cols=92  Identities=27%  Similarity=0.254  Sum_probs=58.2

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      .++..++.+|+..|++..++.+.-+ +.|++.+ |.+.+|+||+|+..|+.+++++|++..   .+|++.+|..|+|||-
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~---kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ-GMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNAC---KVDPDPKDRWGRTPLD  578 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh-ccccccc-ccccchhheeecccCceeHHHHHHHHH---cCCCChhhccCCCcch
Confidence            3445566666666666666666654 6666666 666666666666666666666666663   4445666666666666


Q ss_pred             HHHHcCCHHHHHHHHhc
Q 037504          101 YAAASGSVELVKATMEG  117 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~  117 (396)
                      -|..-+|.+++++|-+.
T Consensus       579 dA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhHhcCcHHHHHHHHHH
Confidence            66666666666666554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=1.5e-10  Score=110.94  Aligned_cols=89  Identities=20%  Similarity=0.286  Sum_probs=81.8

Q ss_pred             HhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccC-CCCchhhhhhcCCCCCccccccchhHhHHH
Q 037504          228 FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK-DGNNILHLAGKLPPLNRLNIVSVAALQLQR  306 (396)
Q Consensus       228 ~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~-~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~  306 (396)
                      ..++..+|.+|..|+|+||+|+..+..+++++|+.+|+|    ++.+|+ .|+||||.|..+|+++++-+|         
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid----v~vqD~ESG~taLHRaiyyG~idca~lL---------  105 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID----VFVQDEESGYTALHRAIYYGNIDCASLL---------  105 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce----eeeccccccchHhhHhhhhchHHHHHHH---------
Confidence            346677899999999999999999999999999999999    889997 599999999999999988777         


Q ss_pred             HHHHHHHHhhhcchhhhhhhcCCCCCchhhHHH
Q 037504          307 ELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       307 ~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                                |.+|+.+.++|++|..||+...+
T Consensus       106 ----------L~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  106 ----------LSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ----------HhcCCceEEecccCCCHHHHHhh
Confidence                      77999999999999999998776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.86  E-value=3.1e-09  Score=59.74  Aligned_cols=28  Identities=39%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 037504           94 IGCTALFYAAASGSVELVKATMEGNEDI  121 (396)
Q Consensus        94 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~  121 (396)
                      +|+||||+|++.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4778888888888888888888877774

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.85  E-value=2.3e-09  Score=102.96  Aligned_cols=99  Identities=20%  Similarity=0.280  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHhCcccc-ccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccC-CCCcHHHHHHHcCCHHHH
Q 037504           34 GDWARAKVIYDEHKDEI-GDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNR-IGCTALFYAAASGSVELV  111 (396)
Q Consensus        34 g~~~~v~~ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~-~g~tpLh~A~~~g~~~~v  111 (396)
                      +....++-++++...+. |.+ |..|+|+||+|+..|..+++++||++|  .++  +.+|. .|.||||-|+..|+++++
T Consensus        28 s~~Nqlk~F~~k~c~n~anik-D~~GR~alH~~~S~~k~~~l~wLlqhG--idv--~vqD~ESG~taLHRaiyyG~idca  102 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIK-DRYGRTALHIAVSENKNSFLRWLLQHG--IDV--FVQDEESGYTALHRAIYYGNIDCA  102 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHH-HhhccceeeeeeccchhHHHHHHHhcC--cee--eeccccccchHhhHhhhhchHHHH
Confidence            33334555665544443 334 777888888888888888888888877  554  77764 477888888888888888


Q ss_pred             HHHHhcCCCCccccCCCCCCCcHHHHHHh
Q 037504          112 KATMEGNEDITMVPQDDKDRMLPIVGAAS  140 (396)
Q Consensus       112 ~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~  140 (396)
                      -+|+.+|+.   +..+|++|.+||..-++
T Consensus       103 ~lLL~~g~S---L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  103 SLLLSKGRS---LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHhcCCc---eEEecccCCCHHHHHhh
Confidence            888888776   45556678888777665

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=3.4e-09  Score=59.53  Aligned_cols=27  Identities=41%  Similarity=0.569  Sum_probs=26.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhhccc
Q 037504          240 NGHTIFHIAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       240 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  266 (396)
                      +|+||||+||++|+.+++++|+++|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            589999999999999999999999998

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=5.8e-09  Score=60.45  Aligned_cols=33  Identities=21%  Similarity=0.444  Sum_probs=30.4

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhhccccccccccccC
Q 037504          240 NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK  276 (396)
Q Consensus       240 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~  276 (396)
                      +|+||||+|+++|+.+++++|+++|++    ++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD----INARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC----TTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC----CCCCCC
Confidence            589999999999999999999999999    777764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13962 PGG: Domain of unknown function

Probab=98.81  E-value=3.7e-09  Score=80.71  Aligned_cols=45  Identities=47%  Similarity=0.775  Sum_probs=39.5

Q ss_pred             hHHHhhhhchhHHHHHHHHHHHHHhhhcCCCCcCCC---CCcccc-cCC
Q 037504          349 ETWVKDNASSCMIVATLITTVVFGAAITVPGGYKEG---IGRLCL-TLP  393 (396)
Q Consensus       349 ~~~~~~~~~~~~~~~~liatv~f~a~~~~pgg~~~~---~g~~~l-~~~  393 (396)
                      ++|+++.+++.+++++||||++|+++++||||+.++   .|.|++ ..|
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~   49 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKP   49 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhcccc
Confidence            368999999999999999999999999999999664   688888 344

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.2e-08  Score=92.23  Aligned_cols=95  Identities=23%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +.++..++.+|++.|.+..++.+.-.|  .++  +.+|.+.+|+||+|+..|+++++++|++.... + .+.+|.+|+||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g--~D~--~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv-~-~~~kDRw~rtP  576 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG--MDL--ETKDYDDRTALHVAAAEGHVEVVKFLLNACKV-D-PDPKDRWGRTP  576 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc--ccc--cccccccchhheeecccCceeHHHHHHHHHcC-C-CChhhccCCCc
Confidence            456778999999999999999988887  676  99999999999999999999999999987432 1 66778899999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcc
Q 037504          135 IVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |.-|...++.+++++|-+...
T Consensus       577 lDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHhc
Confidence            999999999999999987654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.72  E-value=3.5e-08  Score=90.85  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             HHHHHHcCCHHHHHHHHHh-CccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHc
Q 037504           27 LYRVALNGDWARAKVIYDE-HKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAAS  105 (396)
Q Consensus        27 Lh~A~~~g~~~~v~~ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~  105 (396)
                      ||+++...+.+.....+.. ....++.. |..|.||||+|+..|+.+.++.|+..+  +++  ..+|..|++|||.|+..
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~-D~~g~TpLhlAV~Lg~~~~a~~Ll~a~--Adv--~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRR-DPPGRTPLHLAVRLGHVEAARILLSAG--ADV--SIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccc-cCCCCccHHHHHHhcCHHHHHHHHhcC--CCc--cccccccccHHHHHHHc
Confidence            5555555444444332221 12233333 444555555555555555555555544  333  44555555555555555


Q ss_pred             CCHHHHHHHHhc
Q 037504          106 GSVELVKATMEG  117 (396)
Q Consensus       106 g~~~~v~~Ll~~  117 (396)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            555544444443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.72  E-value=4e-08  Score=89.34  Aligned_cols=85  Identities=22%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHc
Q 037504           26 KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAAS  105 (396)
Q Consensus        26 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~  105 (396)
                      .||-.++.|+.+....||.. |+++|...-..|.||||.|++.|+..-+++|+-.|  +++  +..|..|+||+-+|-..
T Consensus       136 QLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG--AD~--~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG--ADP--GAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhcc--CCC--CCCCCCCCcHHHHHHhc
Confidence            46666666666666666654 66666554455666666666666666666666666  555  66666666666666666


Q ss_pred             CCHHHHHHHH
Q 037504          106 GSVELVKATM  115 (396)
Q Consensus       106 g~~~~v~~Ll  115 (396)
                      ||.++.+.|+
T Consensus       211 gH~~laeRl~  220 (669)
T KOG0818|consen  211 GHHELAERLV  220 (669)
T ss_pred             CchHHHHHHH
Confidence            6665555444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.69  E-value=7.2e-08  Score=87.75  Aligned_cols=87  Identities=22%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhcccchhccc-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           61 ALHVAAAANRIDFVKKLVKKMKAENLDLAKRN-RIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      -||-.++.|+.++.-.||..|  +++  |..+ ..|.||||+|++.|+.-=+++|.-+|+|   +...|.+|+||+.+|-
T Consensus       136 QLhasvRt~nlet~LRll~lG--A~~--N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLG--AQA--NFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcc--ccc--CCCCcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHH
Confidence            489999999999999999999  666  6554 4699999999999999999999999999   6777889999999999


Q ss_pred             hcCCHHHHHHHHhhc
Q 037504          140 SLGHTEVVEFLYRET  154 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~~  154 (396)
                      ..||.++.+-|++..
T Consensus       209 ~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  209 QGGHHELAERLVEIQ  223 (669)
T ss_pred             hcCchHHHHHHHHHH
Confidence            999999998887754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=2.5e-08  Score=57.74  Aligned_cols=28  Identities=39%  Similarity=0.546  Sum_probs=18.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 037504           94 IGCTALFYAAASGSVELVKATMEGNEDI  121 (396)
Q Consensus        94 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~  121 (396)
                      +|+||||+|+..|+.+++++|+++|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            3666777777777777777777766663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.66  E-value=4.2e-08  Score=90.62  Aligned_cols=99  Identities=24%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             CCcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCC
Q 037504           15 PPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI   94 (396)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~   94 (396)
                      .-..++.+.+|.||+|+..|+-++|+++|+..+..+....|..|.|+||.|+..++-.++++|++.|  +.+  ...|..
T Consensus       891 ~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag--asl--~ktd~k  966 (1004)
T KOG0782|consen  891 SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG--ASL--RKTDSK  966 (1004)
T ss_pred             ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc--hhh--eecccC
Confidence            3344677789999999999999999999998776665555899999999999999999999999998  777  899999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhc
Q 037504           95 GCTALFYAAASGSVELVKATMEG  117 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~  117 (396)
                      |.||-.-|-+.|..+...||-.+
T Consensus       967 g~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  967 GKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             CCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999999754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.63  E-value=7.3e-08  Score=89.30  Aligned_cols=91  Identities=24%  Similarity=0.181  Sum_probs=77.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc
Q 037504           62 LHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL  141 (396)
Q Consensus        62 Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~  141 (396)
                      |.-|+....+..+-+||.+|....++-...+.+|+|+||+||+.|++.+.++|+=+|+|   +..+|..|.|+|.||-+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d---v~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD---VMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc---ceecccCCchhhhhHhhc
Confidence            45677777788888899988555553345677889999999999999999999999999   667788999999999999


Q ss_pred             CCHHHHHHHHhhcc
Q 037504          142 GHTEVVEFLYRETK  155 (396)
Q Consensus       142 ~~~~~v~~Ll~~~~  155 (396)
                      |..+++.+|+.+|.
T Consensus       705 ~sqec~d~llq~gc  718 (749)
T KOG0705|consen  705 GSQECIDVLLQYGC  718 (749)
T ss_pred             ccHHHHHHHHHcCC
Confidence            99999999999998

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=2.2e-07  Score=85.72  Aligned_cols=91  Identities=22%  Similarity=0.301  Sum_probs=74.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      -|||.++.....+-....+.......  ++.+|..|+||||+|+..|+.+.++.|+..|++   +..+++.||+|||.|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~--id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLV--IDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAV   96 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhce--eccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHH
Confidence            45999998888776655444332234  489999999999999999999999999999999   5667779999999999


Q ss_pred             hcCCHHHHHHHHhhcc
Q 037504          140 SLGHTEVVEFLYRETK  155 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~~~  155 (396)
                      ..|+.+++..++.+..
T Consensus        97 ~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   97 STGNEQIITEVLRHLK  112 (560)
T ss_pred             HcCCHHHHHHHHHHhH
Confidence            9999988887776654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.50  E-value=3.1e-07  Score=85.26  Aligned_cols=91  Identities=25%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccc---cccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDE---IGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY  101 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~  101 (396)
                      .-|.-|+...++..+..||.. |..   .+...+.+|+|+||+||+.|++.+.++|+=.|  .++  ..+|..|+|+|.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg--~dv--~~rda~g~t~l~y  700 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG--VDV--MARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC--ccc--eecccCCchhhhh
Confidence            456778888888888888864 432   23344677899999999999999999999877  655  9999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC
Q 037504          102 AAASGSVELVKATMEGNED  120 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~  120 (396)
                      |-+.|..+|+..|+++|..
T Consensus       701 ar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             HhhcccHHHHHHHHHcCCC
Confidence            9999999999999999975

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.38  E-value=1.2e-06  Score=85.50  Aligned_cols=136  Identities=17%  Similarity=0.166  Sum_probs=103.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHH
Q 037504           56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPI  135 (396)
Q Consensus        56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpL  135 (396)
                      ..+.--.-.|+..|+...|+..++......+++|.+|.-|+++|+.|..+.+.+++++|++++..   .       ..+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---~-------gdAL   92 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---E-------GDAL   92 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc---c-------chHH
Confidence            34455567899999999999999886334466699999999999999999999999999998765   2       3479


Q ss_pred             HHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          136 VGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       136 h~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      .+|+..|..+.|++++.+.....                    -++.+                                
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~--------------------~~~~~--------------------------------  120 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAP--------------------YLERS--------------------------------  120 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccc--------------------hhccc--------------------------------
Confidence            99999999999999998765110                    00000                                


Q ss_pred             HHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccc
Q 037504          216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVAD  268 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~  268 (396)
                                     .+.-...-.-+-|||.+||..++.|++++|+++|+...
T Consensus       121 ---------------~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  121 ---------------GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ---------------cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                           00001112346899999999999999999999999843

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.28  E-value=3.4e-06  Score=82.44  Aligned_cols=123  Identities=22%  Similarity=0.219  Sum_probs=99.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCc---cccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHK---DEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      ..+.-....|+..|+...|+..++...   .++|.. |.-|+++|++|+.+.+.|++++|+++.    +  ..     ..
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~~~----~--~~-----gd   90 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLDTS----S--EE-----GD   90 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhcCc----c--cc-----ch
Confidence            344556779999999999999998644   366777 999999999999999999999999974    2  22     35


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcc-------ccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITM-------VPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~-------~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +|-+|++.|..++|+.++.+-.....       -...-..+.|||.+|+..++.|++++|+.+|+
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            89999999999999999987544210       00111247799999999999999999999998

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.18  E-value=3.8e-06  Score=74.38  Aligned_cols=55  Identities=22%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHh
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKM   81 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   81 (396)
                      --|++||+.|+.+.|+.|++. |.++|.. |....+||.+|+..||.++|++|++.|
T Consensus        38 ~elceacR~GD~d~v~~LVet-gvnVN~v-D~fD~spL~lAsLcGHe~vvklLLenG   92 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET-GVNVNAV-DRFDSSPLYLASLCGHEDVVKLLLENG   92 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh-CCCcchh-hcccccHHHHHHHcCcHHHHHHHHHcC
Confidence            345666666666666666663 6666666 666666666666666666666666666

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.18  E-value=1.6e-06  Score=86.43  Aligned_cols=130  Identities=19%  Similarity=0.106  Sum_probs=99.0

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      ..-.|.+.+|+++..++.-.+..+++..+...... |.+|.-.+|+ |..++.+.+-+++... ...+  +.+|..|+||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hf-ca~lg~ewA~ll~~~~-~~ai--~i~D~~G~tp  644 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHF-CAALGYEWAFLPISAD-GVAI--DIRDRNGWTP  644 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhH-hhhcCCceeEEEEeec-cccc--ccccCCCCcc
Confidence            45678999999999999999999998533333333 7778888888 5555666555555431 1444  9999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccc---cCCCCCCCcHHHHHHhcCCHHHHHHHHhh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMV---PQDDKDRMLPIVGAASLGHTEVVEFLYRE  153 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~  153 (396)
                      ||||+..|+..++..|++.|++...+   ...+..|.|+-.+|..+|+..+.-+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999888764332   22334689999999999999988888665

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=5.7e-06  Score=73.31  Aligned_cols=86  Identities=22%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCC-CCCcHHHH
Q 037504           59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDK-DRMLPIVG  137 (396)
Q Consensus        59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~tpLh~  137 (396)
                      .--|.+||+.|..+.|++|++.|  .++  |.+|....+||.+|+..||.++|++|+++|+-    ..+|. .|..++. 
T Consensus        37 f~elceacR~GD~d~v~~LVetg--vnV--N~vD~fD~spL~lAsLcGHe~vvklLLenGAi----C~rdtf~G~RC~Y-  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG--VNV--NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI----CSRDTFDGDRCHY-  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC--CCc--chhhcccccHHHHHHHcCcHHHHHHHHHcCCc----ccccccCcchhhh-
Confidence            55689999999999999999988  776  99999999999999999999999999999985    23332 4555544 


Q ss_pred             HHhcCCHHHHHHHHhhcc
Q 037504          138 AASLGHTEVVEFLYRETK  155 (396)
Q Consensus       138 A~~~~~~~~v~~Ll~~~~  155 (396)
                      ++.+.+  +=+.|++..-
T Consensus       108 gaLnd~--IR~mllsydi  123 (516)
T KOG0511|consen  108 GALNDR--IRRMLLSYDI  123 (516)
T ss_pred             hhhhHH--HHHHHHHHHH
Confidence            433332  3345665543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.09  E-value=7.5e-06  Score=65.77  Aligned_cols=65  Identities=26%  Similarity=0.269  Sum_probs=50.4

Q ss_pred             hhcccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           88 LAKRNRIGCTALFYAAASGSVELVKATMEGN-EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        88 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +|.+|..|+|||+.|+..|+.+.+.+|+++| +.   +...|..|.+++.+|-+.|..+++..|.+...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---VGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCccc---ccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4788888888888888888888888888888 44   55556688888888888888888888877654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.07  E-value=2.8e-06  Score=84.86  Aligned_cols=132  Identities=19%  Similarity=0.065  Sum_probs=98.2

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhh-cc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhc
Q 037504          128 DKDRMLPIVGAASLGHTEVVEFLYRE-TK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNL  205 (396)
Q Consensus       128 d~~g~tpLh~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~  205 (396)
                      ...|+|-+|+++..++.-.++.+++. +. ...-+.+|             .-.+|+++..|..                
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~-------------qgV~hfca~lg~e----------------  621 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDG-------------QGVIHFCAALGYE----------------  621 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccC-------------CChhhHhhhcCCc----------------
Confidence            34789999999999999999988886 44 33344555             5566666665522                


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccc--cccCCCCchhh
Q 037504          206 GAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD--SKDKDGNNILH  283 (396)
Q Consensus       206 ~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n--~~d~~g~TpLh  283 (396)
                                  ....++    ...+..++.+|..|+||||||+.+|+..++..|++.|++...+.+  ..+-.|.|+-.
T Consensus       622 ------------wA~ll~----~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~  685 (975)
T KOG0520|consen  622 ------------WAFLPI----SADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD  685 (975)
T ss_pred             ------------eeEEEE----eecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh
Confidence                        111111    235677999999999999999999999999999999888654333  33456999999


Q ss_pred             hhhcCCCCCccccccchhHhH
Q 037504          284 LAGKLPPLNRLNIVSVAALQL  304 (396)
Q Consensus       284 ~A~~~~~~~~~~~l~~~~~~~  304 (396)
                      +|...|+..+..+|++.++..
T Consensus       686 la~s~g~~gia~~lse~~L~~  706 (975)
T KOG0520|consen  686 LARANGHKGIAGYLSEKALSA  706 (975)
T ss_pred             hhhcccccchHHHHhhhHHHH
Confidence            999999999988887765443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.07  E-value=2.6e-06  Score=85.44  Aligned_cols=79  Identities=16%  Similarity=0.206  Sum_probs=73.2

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhc
Q 037504          239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVV  318 (396)
Q Consensus       239 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~  318 (396)
                      ..|.|+||.|+..+...++++|++.|++    +|.+|..|+||||.+...|+...+..+                   +.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~----vn~~d~~g~~plh~~~~~g~~~~~~~l-------------------l~  710 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD----VNALDSKGRTPLHHATASGHTSIACLL-------------------LK  710 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc----chhhhccCCCcchhhhhhcccchhhhh-------------------cc
Confidence            4689999999999999999999999999    899999999999999999998888776                   67


Q ss_pred             chhhhhhhcCCCCCchhhHHHH
Q 037504          319 PRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       319 ~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                      .+++.+..+.+|++|+++|.+.
T Consensus       711 ~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  711 RGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             ccccccccCccCcchhhHHhhh
Confidence            8999999999999999998643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.07  E-value=3.9e-06  Score=84.15  Aligned_cols=89  Identities=25%  Similarity=0.278  Sum_probs=77.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHH
Q 037504           56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPI  135 (396)
Q Consensus        56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpL  135 (396)
                      ..|.|+||.|+..|..-+++.|++.|  +++  |.+|..|+||||.+...|+...+..|+++|++   ....+..|.+||
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g--a~v--n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~---~~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG--ADV--NALDSKGRTPLHHATASGHTSIACLLLKRGAD---PNAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC--Ccc--hhhhccCCCcchhhhhhcccchhhhhcccccc---ccccCccCcchh
Confidence            45799999999999999999999999  777  99999999999999999999999999999999   455566899999


Q ss_pred             HHHHhcCCHHHHHHHH
Q 037504          136 VGAASLGHTEVVEFLY  151 (396)
Q Consensus       136 h~A~~~~~~~~v~~Ll  151 (396)
                      ++|....+.+++-++.
T Consensus       727 ~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  727 DIAMEAANADIVLLLR  742 (785)
T ss_pred             hHHhhhccccHHHHHh
Confidence            9998776666555443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.92  E-value=1.9e-05  Score=63.49  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             ccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 037504           47 KDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNED  120 (396)
Q Consensus        47 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  120 (396)
                      +.++|.+ |..|+|||+.|+..|+.+.|.+|+..| .+.  +...|..|.+++.+|-+.|..+.++.|-+.-.+
T Consensus         2 e~~in~r-D~fgWTalmcaa~eg~~eavsyllgrg-~a~--vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINAR-DAFGWTALMCAAMEGSNEAVSYLLGRG-VAF--VGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccch-hhhcchHHHHHhhhcchhHHHHHhccC-ccc--ccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3567888 999999999999999999999999997 223  488999999999999999999999999887544

>smart00248 ANK ankyrin repeats

Probab=97.07  E-value=0.001  Score=36.10  Aligned_cols=26  Identities=38%  Similarity=0.579  Sum_probs=17.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC
Q 037504           95 GCTALFYAAASGSVELVKATMEGNED  120 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~  120 (396)
                      |.||+|+|+..++.++++.|++++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55666666666666666666666654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.82  E-value=0.0019  Score=34.96  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhhccc
Q 037504          240 NGHTIFHIAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       240 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  266 (396)
                      .|.||+|+|+..++.+++++|++.|.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999998876

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.17  E-value=0.0053  Score=57.03  Aligned_cols=66  Identities=27%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhhhcccch--hcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           71 IDFVKKLVKKMKAENLDL--AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        71 ~~~v~~Ll~~~~~~~~d~--~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      ...+++|.+.+..-+.++  ...+..-.|+||+|+..|.-++|.+||+.|+|   ...+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D---p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD---PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC---chhcccCCCCcccccc
Confidence            556777777662222222  33455567999999999999999999999988   5567779999999887

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.00  E-value=0.0054  Score=56.97  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhh
Q 037504          239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAG  286 (396)
Q Consensus       239 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~  286 (396)
                      .--.|+||+|+..|..++|.+||+.|+|    +..+|..|.||..++.
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~D----p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCD----PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCC----chhcccCCCCcccccc
Confidence            3457999999999999999999999999    7789999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.96  E-value=0.047  Score=45.75  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=83.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCC----CCcHH
Q 037504           24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI----GCTAL   99 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~----g~tpL   99 (396)
                      .-.|--|+..-+.+.+..++..         -..-.++|-+|...+..+++.+|+.+-   ++  ..+|.-    +.--+
T Consensus       154 ~isledAV~AsN~~~i~~~Vtd---------KkdA~~Am~~si~~~K~dva~~lls~f---~f--t~~dv~~~~~~~ydi  219 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTD---------KKDAHQAMWLSIGNAKEDVALYLLSKF---NF--TKQDVASMEKELYDI  219 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcc---------hHHHHHHHHHHhcccHHHHHHHHHhhc---ce--ecchhhhcCcchhhH
Confidence            3456678887777777666643         123468899999999999999999874   32  333322    22234


Q ss_pred             HHHHH--cCCHHHHHHHHhcCC-CCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          100 FYAAA--SGSVELVKATMEGNE-DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       100 h~A~~--~g~~~~v~~Ll~~g~-~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      -++..  ..+..++++.+++|- +++..-.+-++|.|-|.-|.++++.+++.+|+++|+
T Consensus       220 eY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  220 EYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            44443  347789999999984 433333344589999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.22  E-value=0.071  Score=44.70  Aligned_cols=119  Identities=12%  Similarity=0.157  Sum_probs=74.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCC----CCcchhHHHHHHhhcc
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL----KDDDCIELLVKLIETD  174 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~----~~~~g~~~l~~~~~~~  174 (396)
                      |--|+...+.+-+.-++....          .-.+++-+++..+..+++-+|++.-...-    ....+           
T Consensus       157 ledAV~AsN~~~i~~~VtdKk----------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~-----------  215 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK----------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKE-----------  215 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH----------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcc-----------
Confidence            445666666666655553221          35678889998899999999998754111    11111           


Q ss_pred             chhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcH
Q 037504          175 SYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMR  254 (396)
Q Consensus       175 ~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~  254 (396)
                        ..-+.++...                         |.....++++++.+.+-.-.. ...+-+.|.|.|.-|+.+++.
T Consensus       216 --~ydieY~LS~-------------------------h~a~~kvL~~Fi~~Glv~vN~-~F~~~NSGdtMLDNA~Ky~~~  267 (284)
T PF06128_consen  216 --LYDIEYLLSE-------------------------HSASYKVLEYFINRGLVDVNK-KFQKVNSGDTMLDNAMKYKNS  267 (284)
T ss_pred             --hhhHHHHHhh-------------------------cCCcHHHHHHHHhccccccch-hhhccCCcchHHHhHHhcCcH
Confidence              1222332221                         333466777777654322221 223456799999999999999


Q ss_pred             HHHHHHHhhccc
Q 037504          255 EIFKFIFEISSV  266 (396)
Q Consensus       255 ~~v~~Ll~~g~~  266 (396)
                      +++.+|+++|+-
T Consensus       268 emi~~Llk~GA~  279 (284)
T PF06128_consen  268 EMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHHcCcc
Confidence            999999999995

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.67  E-value=2.5  Score=34.60  Aligned_cols=143  Identities=17%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             CCchHH-HHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHH
Q 037504           57 LGDTAL-HVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPI  135 (396)
Q Consensus        57 ~g~t~L-h~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpL  135 (396)
                      ....+| .-|+..+-..+++..-+..  .+     .-...++.+-.||+..+.++|++.-+   ++. +  .  +-.+-.
T Consensus        44 c~~~CLl~HAVk~nmL~ILqkyke~L--~~-----~~~~~q~LFElAC~~qkydiV~WI~q---nL~-i--~--~~~~iF  108 (192)
T PF03158_consen   44 CDMWCLLYHAVKYNMLSILQKYKEDL--EN-----ERYLNQELFELACEEQKYDIVKWIGQ---NLH-I--Y--NPEDIF  108 (192)
T ss_pred             CCHHHHHHHHHHcCcHHHHHHHHHHh--hc-----chhHHHHHHHHHHHHccccHHHHHhh---ccC-C--C--Cchhhh
Confidence            445554 4577888888887776654  11     12345678888999999999999832   221 1  1  334456


Q ss_pred             HHHHhcCCHHHHH----HHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhh
Q 037504          136 VGAASLGHTEVVE----FLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVE  211 (396)
Q Consensus       136 h~A~~~~~~~~v~----~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (396)
                      -.|....+.++..    +++++.. +..+.+....+         ..-|..|+.+|                        
T Consensus       109 dIA~~~kDlsLyslGY~l~~~~~~-~~~~~d~~~ll---------~~hl~~a~~kg------------------------  154 (192)
T PF03158_consen  109 DIAFAKKDLSLYSLGYKLLFNRMM-SEHNEDPTSLL---------TQHLEKAAAKG------------------------  154 (192)
T ss_pred             hhhhhccchhHHHHHHHHHHhhcc-cccccCHHHHH---------HHHHHHHHHCC------------------------
Confidence            6777777766532    1222211 11111111111         35567777777                        


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh
Q 037504          212 NERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE  262 (396)
Q Consensus       212 ~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  262 (396)
                         .+..+.+.++     ++..++      .+.|-.|+.+++.+++.+++.
T Consensus       155 ---ll~F~letlk-----ygg~~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  155 ---LLPFVLETLK-----YGGNVD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             ---CHHHHHHHHH-----cCCccc------HHHHHHHHHhhHHHHHHHhhc
Confidence               3455444443     444333      288999999999999888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.25  E-value=0.59  Score=32.56  Aligned_cols=20  Identities=30%  Similarity=0.296  Sum_probs=9.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhc
Q 037504           98 ALFYAAASGSVELVKATMEG  117 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~  117 (396)
                      .+..|+...+-+++++|++.
T Consensus        35 ~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHHh
Confidence            34444444444444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.95  E-value=1.2  Score=30.93  Aligned_cols=49  Identities=12%  Similarity=0.239  Sum_probs=40.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHh
Q 037504           24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKM   81 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   81 (396)
                      ...+..|+..|+.|+++..++...  +    +   ..++..|+...+-+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~--~----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK--P----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc--c----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            356899999999999999886521  1    2   67899999999999999999973

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.96  E-value=5.5  Score=32.69  Aligned_cols=45  Identities=22%  Similarity=0.405  Sum_probs=32.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR  152 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~  152 (396)
                      |.+|+..|-+.-+...+++|.++         ..++|-.|+.+++..++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~---------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNV---------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc---------cHHHHHHHHHhhHHHHHHHhhc
Confidence            56777777777777777777662         2267778888888777777653

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	396
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-04
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-04

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA+   ++ V+ L+K       D+   +  G T L  AAA+G +E+V+  ++ 
Sbjct: 47  GYTPLHLAASNGHLEIVEVLLKN----GADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
             D+      D D   P+  AA  GH E+VE L +
Sbjct: 103 GADVNAY---DNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 24  RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA 83
           R  L+  A NG     K++ +   D   +   + G T LH+AA    ++ VK L++    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 84  ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
              D+  +++ G T L  AA +G +E+VK  +E   D+      DK+   P+  AA  GH
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGH 113
Query: 144 TEVVEFL 150
            EVV+ L
Sbjct: 114 LEVVKLL 120

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA    ++ VK L++       D+  +++ G T L  AA +G +E+VK  +E 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK+   P+  AA  GH EVV+ L
Sbjct: 58  GADVN---AKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA    ++ V+ L+K       D+  +++ G T L  AA  G +E+V+  ++ 
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKA----GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
             D+      DKD   P+  AA  GH E+VE L +
Sbjct: 91  GADVNA---KDKDGYTPLHLAAREGHLEIVEVLLK 122

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 26  KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
           +L   A NG+  R K + +   D   +     G T LH AA     + VK L+ K     
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHYAAKEGHKEIVKLLISK----G 60
Query: 86  LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
            D+  ++  G T L YAA  G  E+VK  +    D+      D D   P+  AA  GH E
Sbjct: 61  ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA---KDSDGRTPLHYAAKEGHKE 117
Query: 146 VVEFL 150
           +V+ L
Sbjct: 118 IVKLL 122

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA +  ++ V+ L+K       D+   +  G T L  AA  G +E+V+  ++ 
Sbjct: 47  GTTPLHLAAYSGHLEIVEVLLK----HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
             D+  +   D D M P+  AA  G+ E+VE L +
Sbjct: 103 GADVNAM---DSDGMTPLHLAAKWGYLEIVEVLLK 134

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 56  RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM 115
            +G T LH+AA    ++ V+ L+K     N D    + +G T L  AA  G +E+V+  +
Sbjct: 45  HVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD----DSLGVTPLHLAADRGHLEVVEVLL 100
Query: 116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
           +   D+     +D +   P+  AA++GH E+VE L + 
Sbjct: 101 KNGADVN---ANDHNGFTPLHLAANIGHLEIVEVLLKH 135

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 26  KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
           +L   A NG+  R K + +   D   +     G T LH AA     + VK L+ K     
Sbjct: 7   RLIEAAENGNKDRVKDLLENGADP--NASDSDGRTPLHYAAENGHKEIVKLLLSK----G 60
Query: 86  LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
            D   ++  G T L YAA +G  E+VK  +    D       D D   P+  AA  GH E
Sbjct: 61  ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKE 117
Query: 146 VVEFL 150
           +V+ L
Sbjct: 118 IVKLL 122

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 26  KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
           +L   A NG+  R K + +   D   +     G T LH AA     + VK L+ K     
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHHAAENGHKEVVKLLISK----G 60
Query: 86  LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
            D+  ++  G T L +AA +G  E+VK  +    D+      D D   P+  AA  GH E
Sbjct: 61  ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA---KDSDGRTPLHHAAENGHKE 117
Query: 146 VVEFL 150
           VV+ L
Sbjct: 118 VVKLL 122

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           GDT LH+AA    ++ V+ L+K       D+   +  G T L  AA  G +E+V+  ++ 
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKN----GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
             D+     DD     P+  AA  GH E+VE L +
Sbjct: 103 GADVN---ADDTIGSTPLHLAADTGHLEIVEVLLK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	396
2rfa_A	232	Transient receptor potential cation channel subfa	4e-18
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-11
2etb_A	256	Transient receptor potential cation channel subfam	3e-10
2etb_A	256	Transient receptor potential cation channel subfam	7e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-07
2pnn_A	273	Transient receptor potential cation channel subfa	6e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.9 bits (203), Expect = 4e-18
 Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 63/258 (24%)

Query: 57  LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
           + ++ L +AA  N +  + KL+K       ++ +R  +G TAL  AA   ++E     ME
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 117 GNEDITMVPQDDKDRMLPIVG------AASLGHTEVVEFL--YRETKNSLKDDDCIELLV 168
              ++   P   +       G      A    +  +V  L     + ++ +    +    
Sbjct: 59  AAPELVFEPMTSELY----EGQTALHIAVINQNVNLVRALLARGASVSA-RATGSVFHYR 113

Query: 169 KLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE---N 225
                   E  L   A                              + E+V LL E   +
Sbjct: 114 PHNLIYYGEHPLSFAACVG---------------------------SEEIVRLLIEHGAD 146

Query: 226 FLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE--ISSVAD----LLFDSKDKDGN 279
                   I   D  G+T+ HI +    +     ++   +S         L    +  G 
Sbjct: 147 --------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL 198

Query: 280 NILHLAGKLPPLNRLNIV 297
               LAG       + + 
Sbjct: 199 TPFKLAGV---EGNIVMF 213

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 11/114 (9%)

Query: 44  DEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA 103
                     +   G+  L  AA     + V+ L++   A   D+  ++ +G T L    
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GA---DIRAQDSLGNTVLHILI 162

Query: 104 ASGSVELVKATMEG----NEDI---TMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              +              +      ++    +   + P   A   G+  + + L
Sbjct: 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 49/276 (17%), Positives = 81/276 (29%), Gaps = 65/276 (23%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           GDT LH+A     +  V +LV   +    +L   N +  T L  A  +    +V+  +  
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
                 +   D+        A        +  L         D +               
Sbjct: 69  GASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE--------ARNYDGL 117

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
           TALHV                          AV  E   E V+LL    L +  D+    
Sbjct: 118 TALHV--------------------------AVNTEC-QETVQLL----LERGADIDAVD 146

Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV 297
            ++G +    AV N    + + +  +   A++  +++   G++ LH A        L +V
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLL--LQHGANV--NAQMYSGSSALHSASG---RGLLPLV 199

Query: 298 SVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                      L                KN    TP
Sbjct: 200 ---------RTLVRSGADS-------SLKNCHNDTP 219

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.6 bits (169), Expect = 2e-13
 Identities = 42/203 (20%), Positives = 65/203 (32%), Gaps = 48/203 (23%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TA H+A        ++ L+       LDL  RN  G TAL  A  +   E V+  +E 
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             DI     D K    P++ A       +V+ L       L+    +             
Sbjct: 139 GADIDA--VDIKSGRSPLIHAVENNSLSMVQLL-------LQHGANVN------AQMYSG 183

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            +ALH  + + L                           L LV  L    +    D    
Sbjct: 184 SSALHSASGRGL---------------------------LPLVRTL----VRSGAD-SSL 211

Query: 237 FDENGHTIFHIAVSNRMREIFKF 259
            + +  T   +A S R+ +I + 
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.5 bits (166), Expect = 4e-13
 Identities = 43/242 (17%), Positives = 74/242 (30%), Gaps = 66/242 (27%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           D+   L  T LH+A        V+ LV    A        +R G TA   A    S   +
Sbjct: 40  DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GA---SPMALDRHGQTAAHLACEHRSPTCL 95

Query: 112 K------ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIE 165
           +      A    + +       + D +  +  A +    E V+ L             +E
Sbjct: 96  RALLDSAAPGTLDLEAR-----NYDGLTALHVAVNTECQETVQLL-------------LE 137

Query: 166 LLVKLIETDSY--ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLW 223
               +   D     + L                            AVEN   L +V+LL 
Sbjct: 138 RGADIDAVDIKSGRSPLIH--------------------------AVENNS-LSMVQLL- 169

Query: 224 ENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILH 283
              L    ++  +   +G +  H A    +  + + +  + S AD     K+   +  L 
Sbjct: 170 ---LQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTL--VRSGADS--SLKNCHNDTPLM 221

Query: 284 LA 285
           +A
Sbjct: 222 VA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G + L  A   N +  V+ L++       ++  +   G +AL  A+  G + LV+  +  
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQH----GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D ++    +     P++ A S    +++   
Sbjct: 206 GADSSLK---NCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 54/165 (32%)

Query: 128 DKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKL-----IETDSYETALHV 182
           D+D   P+  A   G+   V  L             + L  +      I  +  +T LH+
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRL-------------VNLFQQGGRELDIYNNLRQTPLHL 52

Query: 183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH 242
                L                             +V LL    +      +   D +G 
Sbjct: 53  AVITTL---------------------------PSVVRLL----VTAGASPMAL-DRHGQ 80

Query: 243 TIFHIAVSNRMREIFKFIFEISSVADLLFD--SKDKDGNNILHLA 285
           T  H+A  +R     + +  + S A    D  +++ DG   LH+A
Sbjct: 81  TAAHLACEHRSPTCLRAL--LDSAAPGTLDLEARNYDGLTALHVA 123

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.2 bits (186), Expect = 8e-16
 Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 54/229 (23%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             T LH AA  NRID VK  + K  A  +D      +  T L +A   G + +V   M+ 
Sbjct: 42  NVTLLHWAAINNRIDLVKYYISK-GA-IVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKY 98

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             D +++   D +    I  AA  GHT +V +L             I     +   D   
Sbjct: 99  GADPSLI---DGEGCSCIHLAAQFGHTSIVAYL-------------IAKGQDVDMMDQNG 142

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            T L                            A     +++   LL    L     +   
Sbjct: 143 MTPLMW--------------------------AAYRTHSVDPTRLL----LTFNVSVNLG 172

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
              + +T  H AV      +   +  + + A++  D+++  G + L LA
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLL--LEAGANV--DAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 58  GDTALHVAAA-ANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
           G T L  AA   + +D  + L+      +++         TAL +A  +G+  ++   +E
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTF-NV-SVN-LGDKYHKNTALHWAVLAGNTTVISLLLE 198

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              ++      +      +  A    +  ++  L
Sbjct: 199 AGANVDAQ---NIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 57  LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
           L  T LH A     +  V +L+K   A   D +  +  GC+ +  AA  G   +V   + 
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKY-GA---DPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHT-EVVEFL 150
             +D+ M+   D++ M P++ AA   H+ +    L
Sbjct: 131 KGQDVDMM---DQNGMTPLMWAAYRTHSVDPTRLL 162

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 8e-16
 Identities = 52/306 (16%), Positives = 97/306 (31%), Gaps = 89/306 (29%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           ++ T  G T LH+AA    ++ V  L++K        A   + G T L  AA  G V + 
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEK----EASQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET----- 154
           +  +E +          K+ + P+  A    + ++V+ L               T     
Sbjct: 163 ELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 155 --KNSLKDDDCIELLVKL-----IETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGA 207
             +N +   +    L++       E+    T LH+ A++                     
Sbjct: 220 AKQNQV---EVARSLLQYGGSANAESVQGVTPLHLAAQEG-------------------- 256

Query: 208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
                    E+V LL    L K  +     +++G T  H+        +   +  I    
Sbjct: 257 -------HAEMVALL----LSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVL--IKHGV 302

Query: 268 DLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKN 327
            +  D+  + G   LH+A        + +V         + L   +            K 
Sbjct: 303 MV--DATTRMGYTPLHVASH---YGNIKLV---------KFLLQHQADV-------NAKT 341

Query: 328 NDGLTP 333
             G +P
Sbjct: 342 KLGYSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 1e-15
 Identities = 56/277 (20%), Positives = 88/277 (31%), Gaps = 76/277 (27%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +T LH+AA A   +  K L++  KA    +  + +   T L  AA  G   +VK  +E 
Sbjct: 47  VETPLHMAARAGHTEVAKYLLQN-KA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
           N +  +          P+  AA  GH E V  L             +E            
Sbjct: 103 NANPNLA---TTAGHTPLHIAAREGHVETVLAL-------------LEKEASQACMTKKG 146

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            T LHV A+                              + + ELL    L +       
Sbjct: 147 FTPLHVAAKYG---------------------------KVRVAELL----LERDAH-PNA 174

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI 296
             +NG T  H+AV +   +I K +  +         S   +G   LH+A K    N++ +
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLL--LPRGGSP--HSPAWNGYTPLHIAAK---QNQVEV 227

Query: 297 VSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                       L                ++  G+TP
Sbjct: 228 A---------RSLLQYGGSA-------NAESVQGVTP 248

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 4e-14
 Identities = 54/258 (20%), Positives = 81/258 (31%), Gaps = 70/258 (27%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           +   +   T LH AA     + VK L++     N +       G T L  AA  G VE V
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETV 129

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET----- 154
            A +E       +    K    P+  AA  G   V E L               T     
Sbjct: 130 LALLEKEASQACM---TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186

Query: 155 --KNSLKDDDCIELLVKL-----IETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGA 207
              N+L   D ++LL+           +  T LH+ A++N                    
Sbjct: 187 VHHNNL---DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ------------------- 224

Query: 208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
                   +E+   L    L        +    G T  H+A      E+   +  +S  A
Sbjct: 225 --------VEVARSL----LQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALL--LSKQA 269

Query: 268 DLLFDSKDKDGNNILHLA 285
           +   +  +K G   LHL 
Sbjct: 270 NG--NLGNKSGLTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 4e-14
 Identities = 47/277 (16%), Positives = 89/277 (32%), Gaps = 73/277 (26%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA  N+++  + L++            +  G T L  AA  G  E+V   +  
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQY----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             +  +    +K  + P+   A  GH  V + L             I+  V +  T    
Sbjct: 268 QANGNLG---NKSGLTPLHLVAQEGHVPVADVL-------------IKHGVMVDATTRMG 311

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            T LHV +                               ++LV+ L    L    D+  K
Sbjct: 312 YTPLHVASHYG---------------------------NIKLVKFL----LQHQADVNAK 340

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI 296
             + G++  H A      +I   +  + + A    +    DG   L +A +   L  +++
Sbjct: 341 -TKLGYSPLHQAAQQGHTDIVTLL--LKNGASP--NEVSSDGTTPLAIAKR---LGYISV 392

Query: 297 VSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                     ++L     +           +   ++ 
Sbjct: 393 T---------DVLKVVTDETSFV----LVSDKHRMSF 416

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 8e-14
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 56/239 (23%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           +  +  G T LH+AA     + V  L+ K      +    N+ G T L   A  G V + 
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSK----QANGNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLI 171
              ++    +       +    P+  A+  G+ ++V+FL             ++    + 
Sbjct: 295 DVLIKHGVMVDAT---TRMGYTPLHVASHYGNIKLVKFL-------------LQHQADVN 338

Query: 172 ETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKY 230
                  + LH                           A +     ++V LL    L   
Sbjct: 339 AKTKLGYSPLHQ--------------------------AAQQGH-TDIVTLL----LKNG 367

Query: 231 PDLIWKFDENGHTIFHIAVSNRMREIFKF-IFEISSVADLLFDSKDKDGNNILHLAGKL 288
                    +G T   IA       +           + +     DK   +      ++
Sbjct: 368 ASPNEV-SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV--LVSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.8 bits (172), Expect = 3e-13
 Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 52/243 (21%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LHVAA   ++   + L+++    +       + G T L  A    ++++VK  +  
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLER----DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
                       +   P+  AA     EV   L       L+            E+    
Sbjct: 202 GGSPHSP---AWNGYTPLHIAAKQNQVEVARSL-------LQYGGSAN-----AESVQGV 246

Query: 178 TALHVLARKN-------LTSSNQNPRGIFQRYFNLGAK--------AVENERALELVELL 222
           T LH+ A++        L S   N         NLG K          +    + + ++L
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANG--------NLGNKSGLTPLHLVAQEGH-VPVADVL 297

Query: 223 WENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNIL 282
               +     +       G+T  H+A      ++ KF+  +   AD+  ++K K G + L
Sbjct: 298 ----IKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFL--LQHQADV--NAKTKLGYSPL 348

Query: 283 HLA 285
           H A
Sbjct: 349 HQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 49/246 (19%), Positives = 74/246 (30%), Gaps = 74/246 (30%)

Query: 90  KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF 149
                G T L  A+  G + +VK  ++      +    +     P+  AA  GHTEV ++
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKY 65

Query: 150 LYRE--TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGA 207
           L +     N+ K  D              +T LH  AR                      
Sbjct: 66  LLQNKAKVNA-KAKD-------------DQTPLHCAARIG-------------------- 91

Query: 208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
                     +V+LL    L    +        GHT  HIA      E    +  +   A
Sbjct: 92  -------HTNMVKLL----LENNANPNLA-TTAGHTPLHIAAREGHVETVLAL--LEKEA 137

Query: 268 DLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKN 327
                   K G   LH+A K     ++ +          ELL  ++              
Sbjct: 138 SQ--ACMTKKGFTPLHVAAK---YGKVRVA---------ELLLERDAHP-------NAAG 176

Query: 328 NDGLTP 333
            +GLTP
Sbjct: 177 KNGLTP 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.2 bits (186), Expect = 8e-16
 Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 76/294 (25%)

Query: 57  LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
           + +  LH A   N    V++L+    +    L ++++ G   L ++ +  + E+    + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY 176
             E++ +    D     P   A S+G+ EVV+ LY        +           +  + 
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----------KITNQ 106

Query: 177 -ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
             T LH+   K                              E+ + L    +      + 
Sbjct: 107 GVTCLHLAVGKK---------------------------WFEVSQFL----IENGAS-VR 134

Query: 236 KFDENGHTIFHIAVSNRMREIFKFIFEISS-VADLLFDSKDKDGNNILHLAGKLPPLNRL 294
             D+      H A S    ++ + +       + +  + +DK G   L  A         
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELL--CGLGKSAV--NWQDKQGWTPLFHALA---EGHG 187

Query: 295 NIVSVAALQLQRELLWFQEVKKVVPRKFA--EEKNNDGLTPGDLFIKEHEELKK 346
           +            LL        V +  A  +  +N G       +  +E++KK
Sbjct: 188 DAA---------VLL--------VEKYGAEYDLVDNKGAKA--EDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.4 bits (158), Expect = 4e-12
 Identities = 37/209 (17%), Positives = 69/209 (33%), Gaps = 49/209 (23%)

Query: 50  IGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVE 109
           + D     G T  H+A +   ++ VK L  +    +L+  K    G T L  A      E
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN--KITNQGVTCLHLAVGKKWFE 121

Query: 110 LVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK 169
           + +  +E    + +    DK   +P+  AAS+G  +++E L    K+++           
Sbjct: 122 VSQFLIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVN---------- 168

Query: 170 LIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLF 228
               D    T L     +                              +   LL    + 
Sbjct: 169 --WQDKQGWTPLFHALAEG---------------------------HGDAAVLL----VE 195

Query: 229 KYPDLIWKFDENGHTIFHIAVSNRMREIF 257
           KY       D  G     +A++ ++++ F
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 51/292 (17%), Positives = 88/292 (30%), Gaps = 80/292 (27%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               +HVAA   + D V++L++      +    +NR GCTAL  A   G V+  K     
Sbjct: 20  NMEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIE--TDS 175
            E              PI  A     T++V                      L+E   + 
Sbjct: 76  GEVH-----SLWHGQKPIHLAVMANKTDLVVA--------------------LVEGAKER 110

Query: 176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERAL-----------ELVELLWE 224
            +    +L   +    N+              K  + + AL           E++++L  
Sbjct: 111 GQMPESLLNECDEREVNE---------IGSHVKHCKGQTALHWCVGLGPEYLEMIKIL-- 159

Query: 225 NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV---ADLLFDSKDKDGNNI 281
             +        K D+   T    A+  R RE    + +         L  D  +K GN+ 
Sbjct: 160 --VQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL--DYANKQGNSH 214

Query: 282 LHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
           LH A     +N  ++                 +           ++N+   P
Sbjct: 215 LHWAIL---INWEDVA---------MRFVEMGIDV-------NMEDNEHTVP 247

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 25/230 (10%), Positives = 69/230 (30%), Gaps = 41/230 (17%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAEN-LDLAKRNRIGCTALFYAAASGSVELVKATME 116
            +T L  A      + +  ++  + +++ L L   N+ G + L +A      ++    +E
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIEL-LVKLIETDS 175
              D+ M    D +  +P+  +       + + L ++T   L            L +   
Sbjct: 233 MGIDVNME---DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289

Query: 176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
           +   +   A  +                             E+++LL      +  D + 
Sbjct: 290 WLDFVPAAADPSK---------------------------QEVLQLL-----QEKLDEVV 317

Query: 236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           +    G              + +    ++  A +   ++ +       ++
Sbjct: 318 RSLNTGAGGAVKRKKKAAPAVKRMK--LAPSAPV--RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 68/232 (29%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G   +H+A  AN+ D V  LV+    E          G             E+ +     
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEG-AKER---------GQMPESLLNECDEREVNEIGSHV 133

Query: 118 NEDITMVPQDDKDRMLPIVGAASLG--HTEVVEFLYRE--TKNSLKDDDCIELLVKLIET 173
                            +     LG  + E+++ L +   +  + KD             
Sbjct: 134 K---------HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKAD---------- 173

Query: 174 DSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDL 233
              ET L                                    E ++L+ +    K    
Sbjct: 174 ---ETPLMRAMEFR---------------------------NREALDLMMDTVPSKSSLR 203

Query: 234 IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           +   ++ G++  H A+     ++      +    D+  + +D +    L+L+
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRF--VEMGIDV--NMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 26/244 (10%), Positives = 60/244 (24%), Gaps = 67/244 (27%)

Query: 58  GDTALHVAAAA--NRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM 115
           G TALH         ++ +K LV+   A       +++   T L  A    + E +   M
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQL-GA---SPTAKDKADETPLMRAMEFRNREALDLMM 193

Query: 116 EGNE-----DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKL 170
           +         +      +K     +  A  +   +V                 +E+ + +
Sbjct: 194 DTVPSKSSLRLDYA---NKQGNSHLHWAILINWEDVAMRF-------------VEMGIDV 237

Query: 171 IETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELL------- 222
              D+     L++  R                              + L + L       
Sbjct: 238 NMEDNEHTVPLYLSVRAA---------------------------MVLLTKELLQKTDVF 270

Query: 223 -WENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNI 281
             +   +     +             A     +E+ + +     + ++        G   
Sbjct: 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL--QEKLDEV--VRSLNTGAGG 326

Query: 282 LHLA 285
               
Sbjct: 327 AVKR 330

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 32/250 (12%), Positives = 59/250 (23%), Gaps = 82/250 (32%)

Query: 84  ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
             L+  K +      +  AA  G  + V+  +E     T+    ++     +  A   G 
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ---NRFGCTALHLACKFGC 65

Query: 144 TEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYF 203
            +  ++L    +                     +  +H+    N                
Sbjct: 66  VDTAKYLASVGEV--------------HSLWHGQKPIHLAVMAN---------------- 95

Query: 204 NLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI 263
                        +LV  L           +    E G     +      RE        
Sbjct: 96  -----------KTDLVVAL-----------VEGAKERGQMPESLLNECDERE-------- 125

Query: 264 SSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFA 323
             V ++    K   G   LH    L P   L ++         ++L              
Sbjct: 126 --VNEIGSHVKHCKGQTALHWCVGLGP-EYLEMI---------KILVQLGASP------- 166

Query: 324 EEKNNDGLTP 333
             K+    TP
Sbjct: 167 TAKDKADETP 176

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 36/299 (12%), Positives = 73/299 (24%), Gaps = 70/299 (23%)

Query: 43  YDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA 102
           YD +     + +                          ++       +        L + 
Sbjct: 46  YDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT----EPEPESPIKL-HT 100

Query: 103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDD 162
            A+GS  + +     + +I     D +     +   AS    E  E L            
Sbjct: 101 EAAGSYAITEPITRESVNII----DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 163 C-IELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVE 220
             +         D    T L +                                   LV 
Sbjct: 157 ADVN------AMDCDENTPLMLAVLAR---------------------------RRRLVA 183

Query: 221 LLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKF-IFEISSVADLLFDSKDKDGN 279
            L    +    D    ++++  +  H A +NR   +  + +       D+  +  D++G 
Sbjct: 184 YL----MKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI--EELDRNGM 236

Query: 280 NILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKK-----VVPRKFAEEKNNDGLTP 333
             L +          + V+ A      +LL    V+K            + +   G T 
Sbjct: 237 TALMIVAH---NEGRDQVASA------KLL----VEKGAKVDYDGAARKDSEKYKGRTA 282

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 48/285 (16%), Positives = 85/285 (29%), Gaps = 69/285 (24%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENL----DLAKRNRIGCTALFYAAASGSVELVKA 113
             T LH  A+ +  +  + L+     E +    D+   +    T L  A  +    LV  
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIET 173
            M+   D T+    +K     +  AA+     ++ ++     ++    D IE      E 
Sbjct: 185 LMKAGADPTIY---NKSERSALHQAAANRDFGMMVYMLN---STKLKGD-IE------EL 231

Query: 174 DSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE---NFLFK 229
           D    TAL ++A                               +   +LL E      + 
Sbjct: 232 DRNGMTALMIVAHNE------------------------GRDQVASAKLLVEKGAKVDYD 267

Query: 230 YPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV-ADLLFDSKDKDGNNILHLAGKL 288
                      G T  H A       I K++  +    ++   D +D+DG   + LA + 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYL--VGEKGSNK--DKQDEDGKTPIMLAAQ- 322

Query: 289 PPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
               R+ +V           L  Q           E  +    T 
Sbjct: 323 --EGRIEVV---------MYLIQQGASV-------EAVDATDHTA 349

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 72/244 (29%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK---AT 114
            +T L +A  A R   V  L+K   A   D    N+   +AL  AAA+    ++     +
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKA-GA---DPTIYNKSERSALHQAAANRDFGMMVYMLNS 221

Query: 115 MEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLV------ 168
            +   DI  +   D++ M  ++  A     + V                 +LLV      
Sbjct: 222 TKLKGDIEEL---DRNGMTALMIVAHNEGRDQVA--------------SAKLLVEKGAKV 264

Query: 169 ------KLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVEL 221
                 +         TALH  A+ +                            + +V+ 
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVS---------------------------NMPIVKY 297

Query: 222 LWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNI 281
           L    + +      K DE+G T   +A      E+  ++  I   A +  ++ D   +  
Sbjct: 298 L----VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL--IQQGASV--EAVDATDHTA 349

Query: 282 LHLA 285
             LA
Sbjct: 350 RQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 36/295 (12%), Positives = 81/295 (27%), Gaps = 80/295 (27%)

Query: 42  IYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY 101
           + +E K+            +L  A+    I   +  ++                      
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY-------------SLYPNPQ 67

Query: 102 AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDD 161
              +G+  L        +  T   + + +  + +   A+ G   + E +           
Sbjct: 68  GYGNGNDFLGDFNHTNLQIPT---EPEPESPIKLHTEAA-GSYAITEPI----------- 112

Query: 162 DCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVEL 221
                 V +I+     T LH +A  +                           + E  E 
Sbjct: 113 --TRESVNIIDPRHNRTVLHWIASNS---------------------------SAEKSED 143

Query: 222 LWENFLFKYPDL---IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDG 278
           L  +   +       +   D + +T   +AV  R R +  ++  + + AD      +K  
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL--MKAGADP--TIYNKSE 199

Query: 279 NNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
            + LH A          ++           +    +     +   EE + +G+T 
Sbjct: 200 RSALHQAAAN---RDFGMM---------VYM----LNSTKLKGDIEELDRNGMTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TALH AA  + +  VK LV +  +   +  K++  G T +  AA  G +E+V   ++ 
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGS---NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              +  V   D         A +  H  +V+  
Sbjct: 336 GASVEAV---DATDHTARQLAQANNHHNIVDIF 365

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.8 bits (185), Expect = 5e-15
 Identities = 44/285 (15%), Positives = 82/285 (28%), Gaps = 68/285 (23%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G   LH A +    +  + L+K        +   +    T L  AA+   VE+    +  
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKH----GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN----SLKDDDCIELL-----V 168
             D T+V   +      +  A +    E + + ++           D   ++       +
Sbjct: 147 GADPTLV---NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203

Query: 169 KLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLF 228
              +  S+ETALH                                   ++ ELL    L 
Sbjct: 204 NFKQPQSHETALHCAVASLHPKR------------------------KQVAELL----LR 235

Query: 229 KYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL 288
           K  ++  K +++  T  H+A      ++ + +      A +  ++ D  G   LH A   
Sbjct: 236 KGANVNEK-NKDFMTPLHVAAERAHNDVMEVL--HKHGAKM--NALDSLGQTALHRAAL- 289

Query: 289 PPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                L             LL                 +  G T 
Sbjct: 290 --AGHLQTC---------RLLLSYGSDP-------SIISLQGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.0 bits (175), Expect = 8e-14
 Identities = 45/282 (15%), Positives = 99/282 (35%), Gaps = 62/282 (21%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             T LH+AA  NR+  V+ L++   A   D+  +++ G   L  A + G  E+ +  ++ 
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQH-GA---DVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
              +  +   D  +  P+  AAS    EV   L             +         + + 
Sbjct: 114 GACVNAM---DLWQFTPLHEAASKNRVEVCSLL-------------LSHGADPTLVNCHG 157

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGA--KAVENERALELVELLWENFLFKYPDLI 234
           ++A+ +     L              F   +  +A       ++ +      L       
Sbjct: 158 KSAVDMAPTPELRE-------RLTYEFKGHSLLQAAREADLAKVKKT-----LALEIINF 205

Query: 235 WKFDENGHTIFHIAVSN---RMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPL 291
            +  ++  T  H AV++   + +++ + +  +   A++  + K+KD    LH+A +    
Sbjct: 206 KQ-PQSHETALHCAVASLHPKRKQVAELL--LRKGANV--NEKNKDFMTPLHVAAE---R 257

Query: 292 NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
              +++         E+L     K           ++ G T 
Sbjct: 258 AHNDVM---------EVLHKHGAKM-------NALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 56/293 (19%), Positives = 89/293 (30%), Gaps = 83/293 (28%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AA +   + +  L+  +     +    +    T L  AA    V +V+  ++ 
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNV---NCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
             D+      DK  ++P+  A S GH EV E L       LK   C+             
Sbjct: 81  GADVHAK---DKGGLVPLHNACSYGHYEVTELL-------LKHGACVN-----AMDLWQF 125

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
           T LH  A KN                            +E+  LL    L    D     
Sbjct: 126 TPLHEAASKN---------------------------RVEVCSLL----LSHGADPTLV- 153

Query: 238 DENGHTIFHIAVSNRMREIFKFIFE------------ISSVADLLF-----DSKDKDGNN 280
           + +G +   +A +  +RE   + F+            ++ V   L        + +    
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213

Query: 281 ILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
            LH A       R  +          ELL  +            EKN D +TP
Sbjct: 214 ALHCAVASLHPKRKQVA---------ELLLRKGANV-------NEKNKDFMTP 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 32/202 (15%), Positives = 51/202 (25%), Gaps = 64/202 (31%)

Query: 91  RNRIGCTALFYAAASG-SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF 149
                   L  AA SG   +L+      N +       D  +  P+  AA      +V+ 
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS---DGRKSTPLHLAAGYNRVRIVQL 76

Query: 150 LYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAK 208
           L             ++    +   D      LH                           
Sbjct: 77  L-------------LQHGADVHAKDKGGLVPLHNACSYGH-------------------- 103

Query: 209 AVENERALELVELLWE-----NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI 263
                   E+ ELL +     N            D    T  H A S    E+   +  +
Sbjct: 104 -------YEVTELLLKHGACVN----------AMDLWQFTPLHEAASKNRVEVCSLL--L 144

Query: 264 SSVADLLFDSKDKDGNNILHLA 285
           S  AD      +  G + + +A
Sbjct: 145 SHGADP--TLVNCHGKSAVDMA 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 6e-15
 Identities = 45/243 (18%), Positives = 77/243 (31%), Gaps = 34/243 (13%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           GDTALH+A       F+  L+    A +  L  +N +G TAL  AA  G    V+     
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL-YRETKNSLKDDDCIELLVKLIETDSY 176
              + +    ++     +  A  +        L      +     D      +    D+ 
Sbjct: 68  GAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAK--------------AVENERALELVELL 222
                V ++ N             R  +   +              AV ++   E+V LL
Sbjct: 125 HAPAAVDSQPN------PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD-AEMVRLL 177

Query: 223 WENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNIL 282
                    DL       G T  H+AV  +   + + +  + + AD    ++   G   L
Sbjct: 178 ----RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL--LKAGADP--TARMYGGRTPL 229

Query: 283 HLA 285
             A
Sbjct: 230 GSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 41/270 (15%), Positives = 62/270 (22%), Gaps = 79/270 (29%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           D+   LG TALH+AA       V+KL     A    +    R G TAL  A    +    
Sbjct: 39  DLQNDLGQTALHLAAILGEASTVEKLYAA-GA---GVLVAERGGHTALHLACRVRAHTCA 94

Query: 112 K--------ATMEGNEDITMVPQD--DKDRMLPIVGAASL-GHTEVVEFL---------- 150
                       + ++      QD        P    +      E               
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 151 --YRET-------KNSLKDDDCIELLVKL------IETDSYETALHVLARKNLTSSNQNP 195
                T              + + LL          E     T LH+             
Sbjct: 155 NYDGHTPLHVAVIHKDA---EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-------- 203

Query: 196 RGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMRE 255
                              A  ++ELL    L    D        G T    A+      
Sbjct: 204 -------------------AASVLELL----LKAGAD-PTARMYGGRTPLGSALLRPNPI 239

Query: 256 IFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           + + +   +  A         D  +    +
Sbjct: 240 LARLL--RAHGAPE--PEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+A  A     ++ L+K       D   R   G T L  A    +  L +     
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKA----GADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVE 148
                       D++ P   + S   ++  +
Sbjct: 248 GAPEPED---GGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 5/111 (4%)

Query: 40  KVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL 99
           +   D +  +  D           V +  N  +  +   +  +     L   N  G T L
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL---QLEAENYDGHTPL 162

Query: 100 FYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             A      E+V+   +   D+     +      P+  A       V+E L
Sbjct: 163 HVAVIHKDAEMVRLLRDAGADLNK--PEPTCGRTPLHLAVEAQAASVLELL 211

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 73.3 bits (181), Expect = 8e-15
 Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 64/296 (21%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +  L  A     +D V++L++   A N++  +    G T L  A      ++V+  +  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG-GA-NVN-FQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             D  +     K+   P + AA  G  ++++               +     + E D Y 
Sbjct: 62  GADPVLR---KKNGATPFLLAAIAGSVKLLKLF-------------LSKGADVNECDFYG 105

Query: 177 ETALHVLARKN-------LTS--SNQNPRGIFQRYFNLGAK--------AVENERALELV 219
            TA    A          L    +N N R   +       K        A E    +E++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVL 164

Query: 220 ELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE--ISSVADLLFDSKDKD 277
           ++L    L +    +   D  G      A+ +      + I    +   AD+  + + + 
Sbjct: 165 KIL----LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV--NVRGER 218

Query: 278 GNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
           G   L LA +      L +V         + L  QE  ++       + ++DG T 
Sbjct: 219 GKTPLILAVE---KKHLGLV---------QRLLEQEHIEI------NDTDSDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 46/239 (19%), Positives = 78/239 (32%), Gaps = 61/239 (25%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK----- 112
           G T   +AA A  +  +K  + K  A   D+ + +  G TA   AA  G V+ +K     
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSK-GA---DVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 113 -ATM-EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET---KNSLKDDDCIELL 167
            A +    +      +  K     ++ AA  GH EV++ L  E     N+  D+      
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMG---- 182

Query: 168 VKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFL 227
                      AL      +                       ++     +  LL    L
Sbjct: 183 ---------RNALIHALLSS-----------------------DDSDVEAITHLL----L 206

Query: 228 FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV-ADLLFDSKDKDGNNILHLA 285
               D +    E G T   +AV  +   + + +  +     ++  +  D DG   L LA
Sbjct: 207 DHGAD-VNVRGERGKTPLILAVEKKHLGLVQRL--LEQEHIEI--NDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.2 bits (129), Expect = 4e-08
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
           G  AL  A  ++    V+ +   +     D+  R   G T L  A     + LV+  +E 
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
            + +I      D D    ++ A  L   ++ E L
Sbjct: 242 EHIEINDT---DSDGKTALLLAVELKLKKIAELL 272

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 43/276 (15%), Positives = 84/276 (30%), Gaps = 67/276 (24%)

Query: 13  SNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRID 72
           S PP + ++  ++K++R     +      +Y E  D     IT + DT      +  R  
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDI--IYITDMSDTNWWKGTSKGRTG 59

Query: 73  FVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRM 132
            +       +AE+             L  AA  G++  ++  ++    +  +   DK   
Sbjct: 60  LIPSNYVAEQAES---------IDNPLHEAAKRGNLSWLRECLDNRVGVNGL---DKAGS 107

Query: 133 LPIVGAASLGHTEVVEFLYRET---KNSLKDDDCIELLVKLIETDSYETALHVLARKNLT 189
             +  A   GH ++VE L+ +     N  ++                +TALH  A K   
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNIELNQ-QNKL-------------GDTALHAAAWKG-- 151

Query: 190 SSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAV 249
                                      ++V+LL    L K        +      F +A 
Sbjct: 152 -------------------------YADIVQLL----LAKGAR-TDLRNIEKKLAFDMAT 181

Query: 250 SNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           +     + K      + A       + +       +
Sbjct: 182 NAACASLLKKK--QGTDAVR--TLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TAL+ A      D V+ L  +      +L ++N++G TAL  AA  G  ++V+  +  
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNI---ELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY-RETKNSLKD-DDCIELLVKLIETDS 175
                +    + ++ L    A +     +++     +   +L + +D ++          
Sbjct: 163 GARTDLR---NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS-----D 214

Query: 176 YETALH 181
            E   H
Sbjct: 215 LEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 27/209 (12%), Positives = 52/209 (24%), Gaps = 71/209 (33%)

Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLA 184
           P+  K   + +  A         + LY E  +             +  TD  +T      
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGD------------IIYITDMSDTNWWKGT 53

Query: 185 RKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTI 244
            K                               L+   +            +  E+    
Sbjct: 54  SKG---------------------------RTGLIPSNYVA----------EQAESIDNP 76

Query: 245 FHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQL 304
            H A         +    + +   +  +  DK G+  L+ A         +IV       
Sbjct: 77  LHEAAKRGNLSWLREC--LDNRVGV--NGLDKAGSTALYWACH---GGHKDIV------- 122

Query: 305 QRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
             E+L+ Q   ++       ++N  G T 
Sbjct: 123 --EMLFTQPNIEL------NQQNKLGDTA 143

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 6e-14
 Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 46/229 (20%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           GD+ LH+A          ++++++K +   L  +N +  T L  A  +   E+ +A +  
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             D  +    D     P+  A   G    V  L        +      L   L  T+   
Sbjct: 68  GCDPELR---DFRGNTPLHLACEQGCLASVGVL-------TQSCTTPHLHSILKATNYNG 117

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            T LH+ +                               L +VELL    +    D+  +
Sbjct: 118 HTCLHLASIHG---------------------------YLGIVELL----VSLGADVNAQ 146

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
              NG T  H+AV  +  ++   +  +   AD+  +     G +   L 
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLL--LKCGADV--NRVTYQGYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 55  TRLGDTALHVAAAANRIDFVKKLVKK--MKAENLDLAKRNRIGCTALFYAAASGSVELVK 112
              G+T LH+A     +  V  L +       +  L   N  G T L  A+  G + +V+
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             +    D+    Q+  +    +  A  L + ++V  L
Sbjct: 135 LLVSLGADVNA--QEPCNGRTALHLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+A+    +  V+ LV    A +++ A+    G TAL  A    + +LV   ++ 
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSL-GA-DVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDD 161
             D+  V         P         T + + L + T  +L+  
Sbjct: 174 GADVNRV---TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 45/157 (28%)

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
           ++ LH+                            E    +E++  +  +        +  
Sbjct: 9   DSFLHLAIIHE-----------------------EKALTMEVIRQVKGD-----LAFLNF 40

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI 296
            +    T  H+AV     EI + +  + +  D   + +D  GN  LHLA +      L  
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEAL--LGAGCDP--ELRDFRGNTPLHLACEQ---GCLAS 93

Query: 297 VSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
           V          +L        +     +  N +G T 
Sbjct: 94  V---------GVLTQSCTTPHLHSIL-KATNYNGHTC 120

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.4 bits (171), Expect = 8e-14
 Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 60/231 (25%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
             T L  AA  N ++ VK L+K   A    +  ++  G T L  AA  G  E+V+  +  
Sbjct: 44  QRTPLMEAAENNHLEAVKYLIKA-GA---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDDCIELLVKLIETD 174
           G  D+      D     P++ A    H ++V+ L       N  +D++            
Sbjct: 100 GQMDVNCQ---DDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEE----------- 144

Query: 175 SYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLI 234
                LH  A                               +++ E+L    L    DL 
Sbjct: 145 --NICLHWAAFSG---------------------------CVDIAEIL----LAAKCDLH 171

Query: 235 WKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
              + +G +  HIA      +       +S  +D+    K+K+G   L  A
Sbjct: 172 AV-NIHGDSPLHIAARENRYDCVVLF--LSRDSDV--TLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.4 bits (171), Expect = 9e-14
 Identities = 56/279 (20%), Positives = 95/279 (34%), Gaps = 79/279 (28%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             + LH AA A  +D    LV+   A   ++   +    T L  AA +  +E VK  ++ 
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQA-GA---NIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY---RETKNSLKDDDCIELLVKLIETD 174
              +      D +    +  AA  GH EVV++L    +   N  +DD             
Sbjct: 67  GALVDPK---DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDG------------ 110

Query: 175 SYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLI 234
              T +                                   ++LV+LL    L K  D I
Sbjct: 111 -GWTPMIWATEYK---------------------------HVDLVKLL----LSKGSD-I 137

Query: 235 WKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRL 294
              D   +   H A  +   +I + +  +++  DL   + +  G++ LH+A +    NR 
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEIL--LAAKCDL--HAVNIHGDSPLHIAAR---ENRY 190

Query: 295 NIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
           + V          L   ++            KN +G TP
Sbjct: 191 DCV---------VLFLSRDSDV-------TLKNKEGETP 213

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.5 bits (148), Expect = 1e-10
 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 73/251 (29%)

Query: 85  NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT 144
           +++    ++   + L  AA +G V++    ++   +I       +D+  P++ AA   H 
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHL 57

Query: 145 EVVEFLYRE--TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRY 202
           E V++L +     +  KD +               T LH+ A+K                
Sbjct: 58  EAVKYLIKAGALVDP-KDAE-------------GSTCLHLAAKKG--------------- 88

Query: 203 FNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE 262
                         E+V+ L    L      +   D+ G T    A   +  ++ K +  
Sbjct: 89  ------------HYEVVQYL----LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL-- 130

Query: 263 ISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKF 322
           +S  +D+  + +D + N  LH A        ++I          E+L   +         
Sbjct: 131 LSKGSDI--NIRDNEENICLHWAAF---SGCVDIA---------EILLAAKCDL------ 170

Query: 323 AEEKNNDGLTP 333
               N  G +P
Sbjct: 171 -HAVNIHGDSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 9e-10
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +  LH AA +  +D  + L+        DL   N  G + L  AA     + V   +  
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAA----KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           + D+T+    +K+   P+  A+          +
Sbjct: 200 DSDVTLK---NKEGETPLQCASLNSQVWSALQM 229

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.1 bits (174), Expect = 8e-14
 Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 23/282 (8%)

Query: 31  ALNGDWARAKVI-YDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA 89
           A+ G  +    +      DEI  VI      A  +AA    +  + +L +    E + + 
Sbjct: 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159

Query: 90  KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF 149
           +       A   AA +G + ++    E            ++       A   GH  V+ F
Sbjct: 160 QAE--NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217

Query: 150 LYR-----ETKNSLKDDDCIELLVKLIETDSYE-----TALHVLARKNLTSSNQNPRGIF 199
           L             + +   + +   I            A  +     +         + 
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 200 QRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKF 259
             Y         +E  L+ +  L      K          + + +  +A+    +     
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 260 IFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAA 301
           +  I SV             N  ++        RL++ +VA 
Sbjct: 338 LLSIPSV-------LALTKANNYYINET---GGRLDLRAVAL 369

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 55/307 (17%), Positives = 93/307 (30%), Gaps = 86/307 (28%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TALH A   + +D VK LV+   A   ++ + +  G   L  AA+ G +++ +  +  
Sbjct: 73  GLTALHQACIDDNVDMVKFLVEN-GA---NINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
              +  V   + +   P+  A      E+++          +  D              E
Sbjct: 129 GAHVGAV---NSEGDTPLDIAEEEAMEELLQNEVNR-----QGVDI-------------E 167

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
            A     R  L                            +  +      L        + 
Sbjct: 168 AARKEEERIML---------------------------RDARQW-----LNSGHINDVRH 195

Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV 297
            ++G T  H+A +    E+ K +  I +  D+  + KD DG   LH A       +    
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLL--IQARYDV--NIKDYDGWTPLHAAAH---WGKEEAC 248

Query: 298 SVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDL----FIKEHEELKKKGETWV- 352
                     +L              E  N  G T  D+     +   EEL+KK      
Sbjct: 249 ---------RILVENLCDM-------EAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292

Query: 353 -KDNASS 358
            K    S
Sbjct: 293 EKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 82/275 (29%)

Query: 60  TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
                A ++   + V +L+++  A   D+   N  G TAL  A    +V++VK  +E   
Sbjct: 42  AVFLAACSSGDTEEVLRLLER-GA---DINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY-ET 178
           +I    Q D +  +P+  AAS G+ ++ E+L             I     +   +S  +T
Sbjct: 98  NIN---QPDNEGWIPLHAAASCGYLDIAEYL-------------ISQGAHVGAVNSEGDT 141

Query: 179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD 238
            L +   +                              EL++             + +  
Sbjct: 142 PLDIAEEEA---------------------------MEELLQNE-----------VNRQG 163

Query: 239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVS 298
            +            +R+  +++   S   +       K G   LH+A          ++ 
Sbjct: 164 VDIEAARKEEERIMLRDARQWL--NSGHIND--VRHAKSGGTALHVAAAK---GYTEVL- 215

Query: 299 VAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                   +LL                K+ DG TP
Sbjct: 216 --------KLLIQARYDV-------NIKDYDGWTP 235

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 60/247 (24%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +  LH AA       VK L+       LD ++ +  G TAL+YA  SG+++ VK  ++ 
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFS----GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
           N  +                A  L    +V +   E  ++                    
Sbjct: 118 NWRLMF--YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-------------LL 162

Query: 178 TALHVLARKN-------LTSSNQNPRGIFQRYFNLGAK---------AVENERALELVEL 221
           + +H+  +         L     +         N             A++N+  +E+++ 
Sbjct: 163 SCIHITIKNGHVDMMILLLDYMTST--------NTNNSLLFIPDIKLAIDNKD-IEMLQA 213

Query: 222 LWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNI 281
           L++             D N ++     V     EI K I  I    +    S     +  
Sbjct: 214 LFKY------------DINIYSANLENVLLDDAEIAKMI--IEKHVEY--KSDSYTKDLD 257

Query: 282 LHLAGKL 288
           +    KL
Sbjct: 258 IVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 64/232 (27%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI-GCTALFYAAASGSVELVKATME 116
           G +A + A A N +  V  L+          A +N +     L  AA     ++VK  + 
Sbjct: 31  GHSASYYAIADNNVRLVCTLLNA-------GALKNLLENEFPLHQAATLEDTKIVKILLF 83

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY 176
              D +     D      +  A   G+ + V+               ++   +L+     
Sbjct: 84  SGLDDSQF---DDKGNTALYYAVDSGNMQTVKLF-------------VKKNWRLMFYGKT 127

Query: 177 --ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLI 234
             +T+ +     N                            + +V       L + P   
Sbjct: 128 GWKTSFYHAVMLN---------------------------DVSIVSYF----LSEIPSTF 156

Query: 235 WKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGN-NILHLA 285
                   +  HI + N   ++   +  +  +     ++ +       + LA
Sbjct: 157 --DLAILLSCIHITIKNGHVDMMILL--LDYMTST--NTNNSLLFIPDIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 62/223 (27%)

Query: 65  AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
                +   +K  +        D  K +  G +A +YA A  +V LV   +         
Sbjct: 6   RINTWKSKQLKSFLSSK-----DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--- 57

Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYRE--TKNSLKDDDCIELLVKLIETDSYETALHV 182
             +  +   P+  AA+L  T++V+ L       +   DD                TAL+ 
Sbjct: 58  --NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDK-------------GNTALYY 101

Query: 183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH 242
                                            ++ V+L     + K   L++       
Sbjct: 102 AVDSG---------------------------NMQTVKLF----VKKNWRLMFYGKTGWK 130

Query: 243 TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           T F+ AV      I  +   +S +             + +H+ 
Sbjct: 131 TSFYHAVMLNDVSIVSYF--LSEIPS---TFDLAILLSCIHIT 168

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.4 bits (166), Expect = 3e-13
 Identities = 43/243 (17%), Positives = 79/243 (32%), Gaps = 58/243 (23%)

Query: 45  EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA 104
                + +   R G+TALH+AA  +R D  K+L++   A   D   ++ +G T L  A +
Sbjct: 12  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SA---DANIQDNMGRTPLHAAVS 67

Query: 105 SGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDC 163
           + +  + +  +     D+        D   P++ AA L    ++E L             
Sbjct: 68  ADAQGVFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGMLEDL------------- 111

Query: 164 IELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELL 222
           I     +   D   ++ALH  A  N                            ++   +L
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVN---------------------------NVDAAVVL 144

Query: 223 WENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNIL 282
               L    +   + +    T   +A      E  K +  +   A+   D  D       
Sbjct: 145 ----LKNGANKDMQ-NNREETPLFLAAREGSYETAKVL--LDHFANR--DITDHMDRLPR 195

Query: 283 HLA 285
            +A
Sbjct: 196 DIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 37/227 (16%), Positives = 70/227 (30%), Gaps = 63/227 (27%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH A +A+     + L++  +A +LD   R   G T L  AA      +++  +  
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRN-RATDLD--ARMHDGTTPLILAARLAVEGMLEDLINS 114

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
           + D+  V   D      +  AA++ + +    L             ++        ++  
Sbjct: 115 HADVNAV---DDLGKSALHWAAAVNNVDAAVVL-------------LKNGANKDMQNNRE 158

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
           ET L + AR+                            + E  ++L    L  + +    
Sbjct: 159 ETPLFLAAREG---------------------------SYETAKVL----LDHFANRDIT 187

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILH 283
            D        IA      +I +          L     +   +  LH
Sbjct: 188 -DHMDRLPRDIAQERMHHDIVRL---------LD--EYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 70/208 (33%)

Query: 128 DKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDDCIELLVKLIETDSYETALHVLAR 185
           D+     +  AA    ++  + L       N  +D+                T LH    
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANI-QDNM-------------GRTPLHAAVS 67

Query: 186 KNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIF 245
            +                           A  + ++L  N   +  DL  +   +G T  
Sbjct: 68  AD---------------------------AQGVFQILIRN---RATDLDAR-MHDGTTPL 96

Query: 246 HIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQ 305
            +A    +  + + +  I+S AD+  ++ D  G + LH A     +N ++          
Sbjct: 97  ILAARLAVEGMLEDL--INSHADV--NAVDDLGKSALHWAAA---VNNVDAA-------- 141

Query: 306 RELLWFQEVKKVVPRKFAEEKNNDGLTP 333
             +L      K       + +NN   TP
Sbjct: 142 -VVLLKNGANK-------DMQNNREETP 161

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 65.5 bits (161), Expect = 6e-13
 Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 56/223 (25%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
              ++H  AA   +D +K+ ++K     ++  K +  G T L +A+A G +E V+  +E 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK-GDNLVN--KPDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             D  ++    K+R   +  A++ G+T++V  L             +E  V +   D   
Sbjct: 59  GADPHIL---AKERESALSLASTGGYTDIVGLL-------------LERDVDINIYDWNG 102

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            T L    R N                            ++ VE L    L +  DL  +
Sbjct: 103 GTPLLYAVRGN---------------------------HVKCVEAL----LARGADLTTE 131

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGN 279
             ++G+T   +AV+   R++ + I   + +  L     +    
Sbjct: 132 -ADSGYTPMDLAVALGYRKVQQVI--ENHILKL--FQSNLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.3 bits (124), Expect = 5e-08
 Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 73/241 (30%)

Query: 95  GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE- 153
              ++   AA G ++ +K  +   ++  +V + D+    P++ A++ G  E V FL    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 154 -TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN 212
              +     +              E+AL + +                            
Sbjct: 60  ADPHI-LAKE-------------RESALSLASTGG------------------------- 80

Query: 213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD 272
               ++V LL    L +  D+    D NG T    AV     +  + +  ++  ADL   
Sbjct: 81  --YTDIVGLL----LERDVDINIY-DWNGGTPLLYAVRGNHVKCVEAL--LARGADL--T 129

Query: 273 SKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLT 332
           ++   G   + LA  L       +          +++    +K         + N     
Sbjct: 130 TEADSGYTPMDLAVAL---GYRKVQ---------QVIENHILKL-------FQSNLVPAD 170

Query: 333 P 333
           P
Sbjct: 171 P 171

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 39/281 (13%), Positives = 76/281 (27%), Gaps = 86/281 (30%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             + +H AA       ++ L+ +       +        + L  A   G +  VK  ++ 
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQ-GW---AVNIITADHVSPLHEACLGGHLSCVKILLKH 114

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
              +  V     D   P+  A   G  + V  L             ++    +       
Sbjct: 115 GAQVNGV---TADWHTPLFNACVSGSWDCVNLL-------------LQHGASVQPESDLA 158

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE-----NFLFKYPD 232
           + +H  AR+                             +E V  L       +       
Sbjct: 159 SPIHEAARRG---------------------------HVECVNSLIAYGGNID------- 184

Query: 233 LIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLN 292
                  +  T  ++A  N+ R   K +  + S AD+   ++ K  ++ LH   +     
Sbjct: 185 ---HKISHLGTPLYLACENQQRACVKKL--LESGADV---NQGKGQDSPLHAVVR---TA 233

Query: 293 RLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
              +           LL              + KN +G  P
Sbjct: 234 SEELA---------CLLMDFGADT-------QAKNAEGKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 44/234 (18%), Positives = 71/234 (30%), Gaps = 57/234 (24%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           ++IT    + LH A     +  VK L+K   A    +        T LF A  SGS + V
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKH-GA---QVNGVTADWHTPLFNACVSGSWDCV 141

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLI 171
              ++    +    Q + D   PI  AA  GH E V  L       +     I+      
Sbjct: 142 NLLLQHGASV----QPESDLASPIHEAARRGHVECVNSL-------IAYGGNID-----H 185

Query: 172 ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYP 231
           +     T L++                                    V+ L    L    
Sbjct: 186 KISHLGTPLYLACENQ---------------------------QRACVKKL----LESGA 214

Query: 232 DLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           D+     +   +  H  V     E+   +  +   AD    +K+ +G   + L 
Sbjct: 215 DV--NQGKGQDSPLHAVVRTASEELACLL--MDFGADT--QAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 28/238 (11%), Positives = 54/238 (22%), Gaps = 77/238 (32%)

Query: 55  TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKAT 114
              G                  L+    +             + +  AA  G    ++  
Sbjct: 30  GMDGSKPAGPRDFPGIRLLSNPLMGDAVS-----------DWSPMHEAAIHGHQLSLRNL 78

Query: 115 MEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDDCIELLVKLIE 172
           +     + ++     D + P+  A   GH   V+ L  +    N     D          
Sbjct: 79  ISQGWAVNII---TADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTAD---------- 124

Query: 173 TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE-----NFL 227
              + T L                                  + + V LL +        
Sbjct: 125 ---WHTPLFNACVSG---------------------------SWDCVNLLLQHGASVQP- 153

Query: 228 FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
                     + +  +  H A      E    +  I+   ++  D K       L+LA
Sbjct: 154 ----------ESDLASPIHEAARRGHVECVNSL--IAYGGNI--DHKISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             T L++A    +   VKKL++   A +++   + +   + L     + S EL    M+ 
Sbjct: 190 LGTPLYLACENQQRACVKKLLES-GA-DVN---QGKGQDSPLHAVVRTASEELACLLMDF 244

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVV 147
             D       + +   P+           +
Sbjct: 245 GADTQAK---NAEGKRPVELVPPESPLAQL 271

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 42/243 (17%), Positives = 79/243 (32%), Gaps = 58/243 (23%)

Query: 45  EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA 104
                + +   R G+TALH+AA  +R D  K+L++     + D   ++ +G T L  A +
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVS 99

Query: 105 SGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDC 163
           + +  + +  +     D+        D   P++ AA L    ++E L             
Sbjct: 100 ADAQGVFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGMLEDL------------- 143

Query: 164 IELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELL 222
           I     +   D   ++ALH  A  N                            ++   +L
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVN---------------------------NVDAAVVL 176

Query: 223 WENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNIL 282
               L    +   + +    T   +A      E  K +  +   A+   D  D       
Sbjct: 177 ----LKNGANKDMQ-NNREETPLFLAAREGSYETAKVL--LDHFANR--DITDHMDRLPR 227

Query: 283 HLA 285
            +A
Sbjct: 228 DIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 6e-10
 Identities = 42/296 (14%), Positives = 77/296 (26%), Gaps = 99/296 (33%)

Query: 58  GDTALHVAA-------------AANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA 104
           G T L +A+               +    +   + +  A      + +R G TAL  AA 
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GAS--LHNQTDRTGETALHLAAR 66

Query: 105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDD 162
               +  K  +E + D  +    D     P+  A S     V + L   R T    +  D
Sbjct: 67  YSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 163 CIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELL 222
                          T L + AR                                ++E L
Sbjct: 124 G-------------TTPLILAARLA---------------------------VEGMLEDL 143

Query: 223 WE-----NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
                  N            D+ G +  H A +    +    +  + + A+   D ++  
Sbjct: 144 INSHADVN----------AVDDLGKSALHWAAAVNNVDAAVVL--LKNGANK--DMQNNR 189

Query: 278 GNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
               L LA +                   ++L      +       +  ++    P
Sbjct: 190 EETPLFLAAR---EGSYETA---------KVLLDHFANR-------DITDHMDRLP 226

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G +ALH AAA N +D    L+K       +   +N    T LF AA  GS E  K  ++ 
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKN----GANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             +  +    D    LP   A    H ++V  L
Sbjct: 213 FANRDIT---DHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 42/256 (16%), Positives = 75/256 (29%), Gaps = 79/256 (30%)

Query: 90  KRNRIGCTALFYAAASGSVE--LVKATMEGNEDIT---------MVPQDDKDRMLPIVGA 138
            R   G T L  A+ SG           E    +          +  Q D+     +  A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 139 ASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRG 197
           A    ++  + L             +E        D+   T LH     +          
Sbjct: 65  ARYSRSDAAKRL-------------LEASADANIQDNMGRTPLHAAVSAD---------- 101

Query: 198 IFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIF 257
                            A  + ++L  N   +  DL  +   +G T   +A    +  + 
Sbjct: 102 -----------------AQGVFQILIRN---RATDLDAR-MHDGTTPLILAARLAVEGML 140

Query: 258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKV 317
           + +  I+S AD+  ++ D  G + LH A     +N ++            +L      K 
Sbjct: 141 EDL--INSHADV--NAVDDLGKSALHWAAA---VNNVDAA---------VVLLKNGANK- 183

Query: 318 VPRKFAEEKNNDGLTP 333
                 + +NN   TP
Sbjct: 184 ------DMQNNREETP 193

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 61.3 bits (150), Expect = 7e-12
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            D     A     +D VK  V K      D+ +    G   L YAA  G +E+++  +  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             DI      DK  + P++ A   GH   V+ L
Sbjct: 63  GADINAP---DKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.6 bits (125), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G   LH AA   +++ ++ L+ K  A   D+   ++   T L  A   G V  VK  +  
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLK-GA---DINAPDKHHITPLLSAVYEGHVSCVKLLLSK 95

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVE 148
             D T+      D +       +     +++
Sbjct: 96  GADKTVK---GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 89  AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVE 148
                +      +A  +G ++ VK  +   ED+       +    P+  AA  G  E++E
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT---LEGGRKPLHYAADCGQLEILE 57

Query: 149 FL 150
           FL
Sbjct: 58  FL 59

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.4 bits (153), Expect = 7e-12
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 67/226 (29%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
              ++H  AA   + ++   +++ +     +   +  G T L +AAA G + +V+  ++ 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQ-EN---VINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             D  ++    K R   +  A S G+T++V+ L             ++  V + E D   
Sbjct: 59  GADPQLL---GKGRESALSLACSKGYTDIVKML-------------LDCGVDVNEYDWNG 102

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE-----NFLFKYP 231
            T L      N                            ++ V++L E            
Sbjct: 103 GTPLLYAVHGNH---------------------------VKCVKMLLESGADPT------ 129

Query: 232 DLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
                  ++G+    +AV+   R + + I   S +  L      K+
Sbjct: 130 ----IETDSGYNSMDLAVALGYRSVQQVI--ESHLLKL--LQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 55/193 (28%)

Query: 95  GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE- 153
              ++   AA G +  +   +E    I      D++   P++ AA+ G   VVEFL +  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHT---DEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 154 -TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN 212
                                   E+AL +   K                          
Sbjct: 60  ADPQL-LGKG-------------RESALSLACSKG------------------------- 80

Query: 213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD 272
               ++V++L    L    D+    D NG T    AV     +  K +  + S AD    
Sbjct: 81  --YTDIVKML----LDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKML--LESGADP--T 129

Query: 273 SKDKDGNNILHLA 285
            +   G N + LA
Sbjct: 130 IETDSGYNSMDLA 142

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
           G+T L++A   N I+  K L+ +  A   D+  +N I  +   YA A G  E++   ++ 
Sbjct: 39  GNTPLNIAVHNNDIEIAKALIDR-GA---DINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              D+    + ++     ++ AA  GH + V+ L
Sbjct: 95  ATPDLN---KHNRYGGNALIPAAEKGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
            D+    A A  R + +  ++K     +L+  K NR G  AL  AA  G ++ VK  +E 
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKH-ATPDLN--KHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 117 GNEDITMVPQDDKDRMLPIVGAASL-----GHTEVVEFL 150
           G EDI      +      ++ A  L      + ++V+ L
Sbjct: 129 GREDIDFQ---NDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 60/234 (25%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  A   +     + L          + + +  G T L  A  +  +E+ KA ++ 
Sbjct: 6   VGALLEAANQRDTKKVKEILQDT-TY---QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             DI +    +     P + A + G TE++ ++           D +       + + Y 
Sbjct: 62  GADINLQ---NSISDSPYLYAGAQGRTEILAYML-----KHATPD-LN------KHNRYG 106

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
             AL   A K                             ++ V+LL E+      D+ ++
Sbjct: 107 GNALIPAAEKG---------------------------HIDNVKLLLED---GREDIDFQ 136

Query: 237 FDENGHTIFHIAV-----SNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
            ++ G+T    AV     +   ++I K +  + + AD     KD  G   +  A
Sbjct: 137 -NDFGYTALIEAVGLREGNQLYQDIVKLL--MENGADQ--SIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAAS-----GSVELVK 112
           G  AL  AA    ID VK L++  +    D+  +N  G TAL  A           ++VK
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGRE---DIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

Query: 113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             ME   D ++    D      +  A   G+TE+ + L
Sbjct: 163 LLMENGADQSIK---DNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 30/248 (12%), Positives = 62/248 (25%), Gaps = 73/248 (29%)

Query: 91  RNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           +       L  A    + ++ +   +    +  V   D +   P+  A      E+ + L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV---DTEGNTPLNIAVHNNDIEIAKAL 58

Query: 151 YRE--TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAK 208
                  N  ++                ++       +                      
Sbjct: 59  IDRGADINL-QNSI-------------SDSPYLYAGAQGR-------------------- 84

Query: 209 AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS-VA 267
                   E++  + ++     PDL    +  G      A      +  K +  +     
Sbjct: 85  -------TEILAYMLKH---ATPDLNKH-NRYGGNALIPAAEKGHIDNVKLL--LEDGRE 131

Query: 268 DLLFDSKDKDGNNILHLAGKLPPL--NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEE 325
           D+  D ++  G   L  A  L        +IV         +LL      +         
Sbjct: 132 DI--DFQNDFGYTALIEAVGLREGNQLYQDIV---------KLLMENGADQ-------SI 173

Query: 326 KNNDGLTP 333
           K+N G T 
Sbjct: 174 KDNSGRTA 181

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            D  L  AAA  +++ V++L++   A   D    NR G   +      GS ++ +  +  
Sbjct: 12  SDAGLATAAARGQVETVRQLLEA-GA---DPNALNRFGRRPI-QVMMMGSAQVAELLLLH 66

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             +      D      P+  AA  G  + +  L
Sbjct: 67  GAEPNC--ADPATLTRPVHDAAREGFLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT-ALFYAAASGSVELVKATME 116
           G   + V          + L+    A   +    +    T  +  AA  G ++ +     
Sbjct: 45  GRRPIQVMMM-GSAQVAELLLLH-GA---EPNCADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
               + +    D    LP+  A   GH ++  +L
Sbjct: 100 AGARLDVC---DAWGRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
            +          L  AAA G VE V+  +E   D   +   ++    PI     +G  +V
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL---NRFGRRPIQ-VMMMGSAQV 59

Query: 147 VEFL 150
            E L
Sbjct: 60  AELL 63

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 32/234 (13%), Positives = 64/234 (27%), Gaps = 61/234 (26%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G  +L      N      + +           K N +    L  ++  G  +LV+  +  
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAH-GMR----VKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
            +D ++    + + +  +  A   GHTE+V+FL             ++  V +   DS  
Sbjct: 60  VDDPSLP---NDEGITALHNAVCAGHTEIVKFL-------------VQFGVNVNAADSDG 103

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWE---NFLFKYPDL 233
            T LH  A  N                            +++ + L E            
Sbjct: 104 WTPLHCAASCN---------------------------NVQVCKFLVESGAA-----VFA 131

Query: 234 IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK 287
           +   D          +     +  +F+        +     +K     L     
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFL--YGVQEKM--GIMNKGVIYALWDYEP 181

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 55  TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKAT 114
             L    L  ++     D V++++ +      D +  N  G TAL  A  +G  E+VK  
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFL 89

Query: 115 MEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           ++   ++      D D   P+  AAS  + +V +FL
Sbjct: 90  VQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 33/264 (12%), Positives = 71/264 (26%), Gaps = 77/264 (29%)

Query: 95  GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET 154
           G  +L     +   +     +     +      +   +  ++ ++  G  ++V+ +  E 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 155 KN-SLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE 213
            + SL +D+               TALH                                
Sbjct: 61  DDPSLPNDE-------------GITALHNAVCAG-------------------------- 81

Query: 214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADL-LFD 272
              E+V+ L    +    ++    D +G T  H A S    ++ KF+  + S A +    
Sbjct: 82  -HTEIVKFL----VQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFL--VESGAAVFAMT 133

Query: 273 SKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLT 332
             D           +                   + L+  + K           N   + 
Sbjct: 134 YSDMQTAADKCEEME---EGYTQCS---------QFLYGVQEKM-------GIMNKGVIY 174

Query: 333 PGDLFIKEHEELKKKGETWVKDNA 356
              L+  E +      E  +K+  
Sbjct: 175 A--LWDYEPQN---DDELPMKEGD 193

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH AA+ N +   K LV+   A    +   +             G  +  +     
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEV 146
            E +      +K  +  +         E+
Sbjct: 162 QEKMG---IMNKGVIYALWDYEPQNDDEL 187

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 50/287 (17%), Positives = 75/287 (26%), Gaps = 64/287 (22%)

Query: 24  RLKLYRVALNGDWARAKVIYDEH----KDEIGDVITR--LGDTALHVAAAANR------- 70
           R +L+ V   G       + +      K       T    G T L  A    +       
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 71  ---IDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK----------ATMEG 117
              +   K         N         G +AL  A    S++ VK              G
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
                          LP+  AA     +VV +L    +N  +    +E       TDS  
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL---LENPHQPAS-LE------ATDSLG 172

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK 236
            T LH L      S   +          L     +    L++   L          L   
Sbjct: 173 NTVLHALVMIADNSPENSA---------LVIHMYDG--LLQMGARLCPT-----VQLEEI 216

Query: 237 FDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILH 283
            +  G T   +A      EIF+          +L   ++  G    H
Sbjct: 217 SNHQGLTPLKLAAKEGKIEIFRH---------IL--QREFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 27/269 (10%), Positives = 65/269 (24%), Gaps = 66/269 (24%)

Query: 60  TALHVAAAANRIDFVKKLVKK----MKAENLDLAKRNRIGCTALFYAAAS---GSVELVK 112
             L    +    + +  L++      K            G T L  A  +   G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 113 ATMEGNEDITMVPQ--------DDKDRMLPIVGAASLGHTEVVEFLYRE--TKNSLKDDD 162
             ++ ++D              +       +  A      + V+ L       +  +   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACG 122

Query: 163 CIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELL 222
                 +       E  L + A                                ++V  L
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTK---------------------------QWDVVTYL 155

Query: 223 WENFLFK--------------YPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVAD 268
            EN                  +  ++   +   ++   I + + + ++   +    +V  
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL--CPTVQL 213

Query: 269 LLFDSKDKDGNNILHLAGKLPPLNRLNIV 297
              +  +  G   L LA K     ++ I 
Sbjct: 214 E--EISNHQGLTPLKLAAK---EGKIEIF 237

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 45/258 (17%), Positives = 76/258 (29%), Gaps = 58/258 (22%)

Query: 97  TALFYAAASGSVELVKATME-----GNEDITMVPQDDKDRMLPIVGAA---SLGHTEVVE 148
             LF   + G  E +   +E               +       ++ A      G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 149 FLYRETKNSLKDDDCIELLVKLIETDSY---ETALHVLARKNLTSSNQNPRGIFQRYFNL 205
            L        KD    + LV    TD +    +ALH+                       
Sbjct: 64  PLL----QIDKDSGNPKPLVNAQCTDEFYQGHSALHI----------------------- 96

Query: 206 GAKAVENERALELVELLWEN--------FLFKYPDLIWKFDENGHTIFHIAVSNRMREIF 257
              A+E    L+ V+LL EN            +          G     +A   +  ++ 
Sbjct: 97  ---AIEKRS-LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 258 KF-IFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKK 316
            + +      A L  ++ D  GN +LH       +   N    +AL +       Q   +
Sbjct: 153 TYLLENPHQPASL--EATDSLGNTVLHALV----MIADNSPENSALVIHMYDGLLQMGAR 206

Query: 317 VVPR-KFAEEKNNDGLTP 333
           + P  +  E  N+ GLTP
Sbjct: 207 LCPTVQLEEISNHQGLTP 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 44/230 (19%), Positives = 76/230 (33%), Gaps = 39/230 (16%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +T    AA       + +L++       D+   +  G TAL + A  GS + V+   E 
Sbjct: 45  YETPWWTAARKADEQALSQLLEDR-----DVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             D+    +D +  +  +  AA     EVVE L             +EL   +   D   
Sbjct: 100 GADLDH--RDMRGGLTALHMAAGYVRPEVVEAL-------------VELGADIEVEDERG 144

Query: 177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWEN-FLFKYPDLIW 235
            TAL +      T+   NP          G          +++ +L    F +   D I 
Sbjct: 145 LTALELAREILKTTPKGNP-------MQFGR----RIGLEKVINVLEGQVFEYAEVDEIV 193

Query: 236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           +    G  + ++       +          VA+ +     KD  + L  A
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVK--GVHVAEDV----AKDYEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 56/198 (28%)

Query: 89  AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVE 148
           ++    G          G       +     D+       +    P   AA     + + 
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYET-PWWTAARKADEQALS 62

Query: 149 FLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGA 207
            L       L+D D ++        D    TAL  +A                       
Sbjct: 63  QL-------LEDRD-VD------AVDENGRTALLFVAGLG-------------------- 88

Query: 208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
                  + + V LL         DL  +    G T  H+A      E+ + +  +   A
Sbjct: 89  -------SDKCVRLL----AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL--VELGA 135

Query: 268 DLLFDSKDKDGNNILHLA 285
           D+  + +D+ G   L LA
Sbjct: 136 DI--EVEDERGLTALELA 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.6 bits (148), Expect = 4e-11
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 26/165 (15%)

Query: 24  RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA 83
            ++      +G             D + +      +T    AA       + +L+     
Sbjct: 15  AMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWWTAARKADEQALSQLL----- 64

Query: 84  ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
           E+ D+   +  G TAL + A  GS + V+   E   D+    +D +  +  +  AA    
Sbjct: 65  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH--RDMRGGLTALHMAAGYVR 122

Query: 144 TEVVEFLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKN 187
            EVVE L             +EL   +   D    TAL +     
Sbjct: 123 PEVVEAL-------------VELGADIEVEDERGLTALELAREIL 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.1 bits (139), Expect = 6e-10
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TAL   A       V+ L +   A +LD  +  R G TAL  AA     E+V+A +E 
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEA-GA-DLD-HRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             DI +    D+  +  +  A  +  T      
Sbjct: 133 GADIEVE---DERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 56/198 (28%)

Query: 89  AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVE 148
           ++    G          G       +     D+       +    P   AA     + + 
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYET-PWWTAARKADEQALS 61

Query: 149 FLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGA 207
            L       L+D D ++        D    TAL  +A                       
Sbjct: 62  QL-------LEDRD-VD------AVDENGRTALLFVAGLG-------------------- 87

Query: 208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
                  + + V LL         DL  +    G T  H+A      E+ + +  +   A
Sbjct: 88  -------SDKCVRLL----AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL--VELGA 134

Query: 268 DLLFDSKDKDGNNILHLA 285
           D+  + +D+ G   L LA
Sbjct: 135 DI--EVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 24/93 (25%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TALH+AA   R + V+ LV+   A   D+   +  G TAL  A               
Sbjct: 110 GLTALHMAAGYVRPEVVEALVEL-GA---DIEVEDERGLTALELAREILKTTPKG----- 160

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
                           P+     +G  +V+  L
Sbjct: 161 ---------------NPMQFGRRIGLEKVINVL 178

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.7 bits (141), Expect = 5e-11
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA    ++ VK L++   A   D+  +++ G T L  AA +G +E+VK  +E 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK+   P+  AA  GH EVV+ L
Sbjct: 58  GADVN---AKDKNGRTPLHLAARNGHLEVVKLL 87

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 60/240 (25%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             TALH A +A   + V+ L++        +  ++  G + L  AA++G  E+VKA +  
Sbjct: 40  SRTALHWACSAGHTEIVEFLLQL-GV---PVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
              +      +++   P+  AAS    E+   L     N    D                
Sbjct: 96  GAHVN---AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------------HYDA 140

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
           TA+H  A K                             L++V +     L  Y       
Sbjct: 141 TAMHRAAAKG---------------------------NLKMVHI-----LLFYKASTNIQ 168

Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV 297
           D  G+T  H+A      E  KF+  ++  A +    ++K+    L +A        L ++
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFL--VTQGASI--YIENKEEKTPLQVAK-----GGLGLI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 28/198 (14%)

Query: 95  GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET 154
                  A +    EL +  +      T     D+D    +  A S GHTE+VEFL    
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRT---DQDSRTALHWACSAGHTEIVEFL---- 59

Query: 155 KNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE 213
                    ++L V + + D    + LH+ A        +    +  +  ++ A      
Sbjct: 60  ---------LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA---LLVKGAHVNAVNQNGC 107

Query: 214 RALELV----ELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADL 269
             L              L +        D    T  H A +    ++   +  +   A  
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL--LFYKAST 165

Query: 270 LFDSKDKDGNNILHLAGK 287
             + +D +GN  LHLA  
Sbjct: 166 --NIQDTEGNTPLHLACD 181

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 46/287 (16%), Positives = 73/287 (25%), Gaps = 65/287 (22%)

Query: 27  LYRVALNGDWARAKVIYD---EHKDEIGDVITR---LGDTALHVAAAANR---------- 70
           ++      +    + +       K  + D   +    G T L  A               
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 71  IDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK-----------ATMEGNE 119
           +D  +K     +  N         G TAL  A    ++ LV            A      
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY-ET 178
             T          LP+  AA      +V+FL    +NS +  D I         DS   T
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFL---LQNSWQPAD-IS------ARDSVGNT 186

Query: 179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD 238
            LH L      + +            L   A                 L     L    +
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGA----------------KLHPTLKLEEITN 230

Query: 239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
             G T   +A S+    +  +I +           ++       H A
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQ-----------REIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 38/269 (14%), Positives = 74/269 (27%), Gaps = 61/269 (22%)

Query: 58  GDTALHVAAAANRIDFVKKL---VKKMKAENLDL-AKRNRIGCTALFYAAAS---GSVEL 110
              ++  A A +    ++ L   +++ K    D   K    G T L  A  +   G  + 
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 111 VKATMEGNEDITMVPQ--------DDKDRMLPIVGAASLGHTEVVEFLYRETKN-SLKDD 161
           +   ++       + Q                +  A    +  +V  L     +     +
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 162 DCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVE 220
                  K      + E  L + A  N                            L +V+
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTN---------------------------QLAIVK 165

Query: 221 LLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLL---------- 270
            L +N     P  I   D  G+T+ H  V      +    F  S   ++L          
Sbjct: 166 FLLQN--SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 271 --FDSKDKDGNNILHLAGKLPPLNRLNIV 297
              +  ++ G   L LA       ++ ++
Sbjct: 224 KLEEITNRKGLTPLALAAS---SGKIGVL 249

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 8e-11
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA    ++ VK L++   A   D+  +++ G T L  AA +G +E+VK  +E 
Sbjct: 35  GRTPLHLAARNGHLEVVKLLLEA-GA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK+   P+  AA  GH EVV+ L
Sbjct: 91  GADVNAK---DKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 56.2 bits (137), Expect = 4e-10
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH+AA    ++ VK L++   A   D+  +++ G T L  AA +G +E+VK  +E 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK+   P+  AA  GH EVV+ L
Sbjct: 58  GADVN---AKDKNGRTPLHLAARNGHLEVVKLL 87

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 43/232 (18%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
           G+T LH   +   ++ VK LVK       +    + +G + L  A  S +          
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 117 ---GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIET 173
                  + +    D      +                             +  + ++  
Sbjct: 187 LDYLYPCLILE---DSMNRTILHHIIITSGMT-------------GCSAAAKYYLDIL-- 228

Query: 174 DSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDL 233
                 +  + +K                          ER   ++E L  +  +   ++
Sbjct: 229 ------MGWIVKKQNRPIQSGTNEK-----ESKPNDKNGERKDSILENL--DLKWIIANM 275

Query: 234 IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           +   D NG T  +IA       I   +  +   AD      +K G   +   
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDAL--LDYGADP--FIANKSGLRPVDFG 323

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G + +H AA    +D +K LV+   A   D+   +  G   +  A   G   +V      
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEH-GA---DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           + D+      D   + P+  A   G  ++V+ L
Sbjct: 124 S-DLHRR---DARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 9e-10
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 33/153 (21%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AAA   +  V++L+ +           NR G TAL      GS  +    ++ 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELV---HPDALNRFGKTAL-QVMMFGSTAIALELLKQ 57

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET-------KNSL 158
                +    D     P+  AA  G  + ++ L                       +   
Sbjct: 58  GASPNVQ---DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 159 KDDDCIELLVK---LIETDSY-ETALHVLARKN 187
                +  L     L   D+   T L +  ++ 
Sbjct: 115 ---AVVSFLAAESDLHRRDARGLTPLELALQRG 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 33/154 (21%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               +           V+  +      +L+  + +  G + L +A   G   +V+  +  
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDN-TENDLN--QGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET-------KNSL 158
              I ++   ++    P+  AAS GH ++V+ L            +              
Sbjct: 62  GARINVM---NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 159 KDDDCIELLVK----LIETDSY-ETALHVLARKN 187
                 E LV     +   + Y E  +       
Sbjct: 119 ---QVAEDLVANGALVSICNKYGEMPVDKAKAPL 149

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            DT LH+AA+    D V+KL++  KA   D+   N  G   L YA   G  ++ +  +  
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQY-KA---DINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              +++    +K   +P+  A +     + E  
Sbjct: 128 GALVSIC---NKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 66/199 (33%)

Query: 95  GCTALFYAAASGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--Y 151
               +F     G+   V+  ++    D+      D     P+  A   G + VVE L   
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQG---DDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 152 RETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVE 211
               N   +                +T LH+ A                           
Sbjct: 62  GARINV-MNRGD-------------DTPLHLAASHG------------------------ 83

Query: 212 NERALELVELLWE-----NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV 266
                ++V+ L +     N            +E+G+   H A      ++ + +  +++ 
Sbjct: 84  ---HRDIVQKLLQYKADIN----------AVNEHGNVPLHYACFWGQDQVAEDL--VANG 128

Query: 267 ADLLFDSKDKDGNNILHLA 285
           A +     +K G   +  A
Sbjct: 129 ALV--SICNKYGEMPVDKA 145

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AAA  R++ V+ L++   A   +    N  G   +      GS  + +  +  
Sbjct: 12  SADWLATAAARGRVEEVRALLEA-GA---NPNAPNSYGRRPI-QVMMMGSARVAELLLLH 66

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             +      D      P+  AA  G  + +  L
Sbjct: 67  GAEPNC--ADPATLTRPVHDAAREGFLDTLVVL 97

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT-ALFYAAASGSVELVKATME 116
           G   + V          + L+    A   +    +    T  +  AA  G ++ +     
Sbjct: 45  GRRPIQVMMM-GSARVAELLLLH-GA---EPNCADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
               + +    D    LP+  A  LGH +V  +L
Sbjct: 100 AGARLDVR---DAWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 60  TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
             +H AA    +D +  L +   A    L  R+  G   +  A   G  ++ +       
Sbjct: 80  RPVHDAAREGFLDTLVVLHRA-GA---RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVE 148
                   +  R+      A+ G +++ +
Sbjct: 136 GTR---GSNHARI-----DAAEGPSDIPD 156

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G+T LH AA     + VKKL+ K  A   D+  R++ G T L  AA +G  E+VK  +  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSK-GA---DVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+       KD   P   A   GH E+V+ L
Sbjct: 65  GADVNAR---SKDGNTPEHLAKKNGHHEIVKLL 94

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AA A + D V+ L+    A   D+A +++ G T L  AA +G +E+VK  +E 
Sbjct: 24  LGKKLLEAARAGQDDEVRILMAN-GA---DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK        +   G+ ++ E L
Sbjct: 80  GADV---XAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 65  AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
            ++ +       LV +        +         L  AA +G  + V+  M    D+   
Sbjct: 1   GSSHHHHHHSSGLVPRG-------SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK 53

Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFL 150
              DK+   P+  AA  GH EVV+ L
Sbjct: 54  ---DKNGSTPLHLAARNGHLEVVKLL 76

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 34/154 (22%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            D  L  AA A  ++ VKKL      ++++         T L +AA    V +V+  ++ 
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET-------KNSL 158
             D+      DK  ++P+  A S GH EV E L            ++ T       K   
Sbjct: 65  GADVHAK---DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121

Query: 159 KDDDCIELLVK----LIETDSY-ETALHVLARKN 187
              +  +LL++      + +    T L  L +  
Sbjct: 122 ---EICKLLLQHGADPTKKNRDGNTPLD-LVKDG 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 41/205 (20%), Positives = 59/205 (28%), Gaps = 66/205 (32%)

Query: 89  AKRNRIGCTALFYAAASGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVV 147
           A  N      L  AA +G VE VK      + +   +   +  +  P+  AA      VV
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI---EGRQSTPLHFAAGYNRVSVV 58

Query: 148 EFL--YRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNL 205
           E+L  +    ++ KD                   LH                        
Sbjct: 59  EYLLQHGADVHA-KDKG-------------GLVPLHNACSYG------------------ 86

Query: 206 GAKAVENERALELVELLWE-----NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFI 260
                      E+ ELL +     N            D    T  H A +    EI K +
Sbjct: 87  ---------HYEVAELLVKHGAVVN----------VADLWKFTPLHEAAAKGKYEICKLL 127

Query: 261 FEISSVADLLFDSKDKDGNNILHLA 285
             +   AD     K++DGN  L L 
Sbjct: 128 --LQHGADP--TKKNRDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G   LH A +    +  + LVK   A    +   +    T L  AAA G  E+ K  ++ 
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKH-GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D T     ++D   P+      G T++ + L
Sbjct: 131 GADPTKK---NRDGNTPL-DLVKDGDTDIQDLL 159

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G+T LH+A+    I  V+ L++   +   D   ++  G T L  A   G +++V+  ++ 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQN-GS---DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              +            P+  AA  GH ++V+ L
Sbjct: 66  KALVNTT---GYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T LH A     +  V+ L++  KA    +        + L  AA +G V++VK  +  
Sbjct: 43  GWTPLHEACNHGHLKVVELLLQH-KA---LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
                 V   +   + P+          ++   
Sbjct: 99  GASRNAV---NIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
           D    +R G T L  A+  G +  V+  ++   D  +    D     P+  A + GH +V
Sbjct: 3   DPFTNHR-GETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKV 58

Query: 147 VEFL 150
           VE L
Sbjct: 59  VELL 62

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.0 bits (139), Expect = 5e-10
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AA A R D V+ L+    A   D+   +  G T L  AA +G +E+V+  ++ 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMAN-GA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+  V   D   M P+  AA  GH E+VE L
Sbjct: 70  GADVNAV---DHAGMTPLRLAALFGHLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T L +AA    ++ V+ L+K   A   D+   +  G T L  AA  G +E+V+  ++ 
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLKN-GA---DVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK        +   G+ ++ E L
Sbjct: 136 GADVNAQ---DKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.8 bits (110), Expect = 3e-06
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 65/198 (32%)

Query: 95  GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE- 153
               L  AA +G  + V+  M    D+      D     P+  AA  GH E+VE L +  
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAE---DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 154 -TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN 212
              N+  D                 T L + A                            
Sbjct: 71  ADVNA-VDHA-------------GMTPLRLAALFG------------------------- 91

Query: 213 ERALELVELLWE-----NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
              LE+VE+L +     N            D  GHT  H+A      EI + +  + + A
Sbjct: 92  --HLEIVEVLLKNGADVN----------ANDMEGHTPLHLAAMFGHLEIVEVL--LKNGA 137

Query: 268 DLLFDSKDKDGNNILHLA 285
           D+  +++DK G     ++
Sbjct: 138 DV--NAQDKFGKTAFDIS 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
           G   +H AA A  +D ++ L++  +A   D+   +  G   L  AA  G + +V+  ++ 
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEF-QA---DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              ++      +         A   G  EVV  +
Sbjct: 126 TASNVGHR---NHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 55/204 (26%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AAA   ++ +  L++     N+++  +N  G TAL      G+ E+ +  +  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLR 59

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDDCIELLVKLIETDS 175
             +  +    D+     I  AA  G  + ++ L  ++   N  +D++             
Sbjct: 60  GANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNE------------- 102

Query: 176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
               LH+ A++                             L +VE L ++      + + 
Sbjct: 103 GNLPLHLAAKEG---------------------------HLRVVEFLVKH---TASN-VG 131

Query: 236 KFDENGHTIFHIAVSNRMREIFKF 259
             +  G T   +A      E+   
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 69/197 (35%)

Query: 138 AASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPR 196
           AA+ G  E +  L             ++  V +   + +  TAL V+   N         
Sbjct: 12  AAARGDLEQLTSL-------------LQNNVNVNAQNGFGRTALQVMKLGNP-------- 50

Query: 197 GIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREI 256
                               E+   L    L +  +     D  G  + H A      + 
Sbjct: 51  --------------------EIARRL----LLRGAN-PDLKDRTGFAVIHDAARAGFLDT 85

Query: 257 FKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKK 316
            + +  +   AD+  + +D +GN  LHLA K      L +V         E L       
Sbjct: 86  LQTL--LEFQADV--NIEDNEGNLPLHLAAK---EGHLRVV---------EFLVKHTASN 129

Query: 317 VVPRKFAEEKNNDGLTP 333
           V        +N+ G T 
Sbjct: 130 V------GHRNHKGDTA 140

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 30/230 (13%), Positives = 54/230 (23%), Gaps = 57/230 (24%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AA    ++ V++ VK+M     D ++ N  G TAL  A    +  +V   +  
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEM-N---DPSQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY- 176
             ++      D     P+  AAS   T +   L             ++    +  T    
Sbjct: 77  GANVN---SPDSHGWTPLHCAASCNDTVICMAL-------------VQHGAAIFATTLSD 120

Query: 177 -ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW 235
             TA                                 E   +    L          +  
Sbjct: 121 GATAFE-KC------------------------DPYREGYADCATYL----ADVEQSMGL 151

Query: 236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
             +           +    E+            +    +D         A
Sbjct: 152 M-NSGAVYALWDYSAEFGDEL-----SFREGESVTVLRRDGPEETDWWWA 195

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 46/291 (15%), Positives = 72/291 (24%), Gaps = 86/291 (29%)

Query: 60  TALHVAAAANRIDFVKKLVK---KMKAE-NLDLAKRNRIGCTALFYAAASGSVELVKATM 115
             L    +    D ++ L+      K     +  +    G T L  A  +          
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN---------- 56

Query: 116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDS 175
                                   S G  + +  L    + +    + I    + +    
Sbjct: 57  -----------------------LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRG 93

Query: 176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWEN---------F 226
            +TALH+                          A+E       VELL E           
Sbjct: 94  -QTALHI--------------------------AIERRC-KHYVELLVEKGADVHAQARG 125

Query: 227 LFKYPDLIWKFDENGHTIFHIAVSNRMREIFKF-IFEISSVADLLFDSKDKDGNNILHLA 285
            F  P     +   G     +A       I  +        ADL    +D  GN +LH  
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL--RRQDSRGNTVLHAL 183

Query: 286 ---GKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                    N   +  +  L L +        K           NNDGL+P
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSP 228

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 41/227 (18%), Positives = 62/227 (27%), Gaps = 52/227 (22%)

Query: 58  GDTALHVAAAANR----------IDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGS 107
           G T L  A               +D  +K     +  N         G TAL  A     
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 108 VELVKATME-G---NE-DITMVPQDDKDRMLPIVG------AASLGHTEVVEFLYRETKN 156
              V+  +E G   +        Q   +      G      AA      +V +L   T+N
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL---TEN 162

Query: 157 SLKDDDCIELLVKLIETDSY-ETALHVLA--RKNLTSSNQNPRGIFQRYFNLGAKAVENE 213
             K  D       L   DS   T LH L     N   + +    ++       AK   + 
Sbjct: 163 GHKQAD-------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFI 260
               L+                  + +G +   +A       IF+ I
Sbjct: 216 NLEALL------------------NNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 39  AKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA 98
           A+      + +        G+  L +AA  N+   V  L +    +  DL +++  G T 
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN-GHKQADLRRQDSRGNTV 179

Query: 99  LFYAAASGSVE-------------LVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
           L    A                  L+    +   D  +    + D + P++ AA  G   
Sbjct: 180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239

Query: 146 VVEFL 150
           + + +
Sbjct: 240 IFQHI 244

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.3 bits (132), Expect = 6e-09
 Identities = 33/232 (14%), Positives = 60/232 (25%), Gaps = 69/232 (29%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAK--RNRIGCTALFYAAASGSVELVKATM 115
           G+    +    +              +NLD  +  R+    T L  A   G    +   +
Sbjct: 8   GEIVEKIKDEKSIN------------QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKNSLKDDDCIELLVKLIET 173
           E  + +      D +    ++ A       + E L       N+ KD             
Sbjct: 56  ENFDKLEDK---DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFS----------- 100

Query: 174 DSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDL 233
              +T L                                    E+   L    L    ++
Sbjct: 101 --GKTPLMWSIIFG---------------------------YSEMSYFL----LEHGANV 127

Query: 234 IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
             + +  G T   +A      EI K +  +   AD+   ++D  G      A
Sbjct: 128 NDR-NLEGETPLIVASKYGRSEIVKKL--LELGADI--SARDLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.2 bits (124), Expect = 6e-08
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 34/154 (22%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             T L VA      + + KLV+        L  ++  G TAL +A  +  + + +  +  
Sbjct: 35  NRTPLMVACMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET-------KNSL 158
             ++      D     P++ +   G++E+  FL              ET           
Sbjct: 91  GSNVNTK---DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 159 KDDDCIELLVKL---I-ETDSY-ETALHVLARKN 187
              + ++ L++L   I   D    TA        
Sbjct: 148 ---EIVKKLLELGADISARDLTGLTAEASARIFG 178

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T L  +      +    L++   A   ++  RN  G T L  A+  G  E+VK  +E 
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEH-GA---NVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             DI+     D   +     A   G  EV++  
Sbjct: 157 GADISAR---DLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 37/246 (15%), Positives = 71/246 (28%), Gaps = 78/246 (31%)

Query: 89  AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVE 148
           +  ++ G             + +                D     P++ A  LG    ++
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR---------DSYNRTPLMVACMLGMENAID 52

Query: 149 FLYRETKNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGA 207
            L       +++ D +E      + D    TAL    + N                    
Sbjct: 53  KL-------VENFDKLE------DKDIEGSTALIWAVKNN-------------------- 79

Query: 208 KAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA 267
                   L + E L    L K  ++  K D +G T    ++     E+  F+  +   A
Sbjct: 80  -------RLGIAEKL----LSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFL--LEHGA 125

Query: 268 DLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKN 327
           ++  + ++ +G   L +A K     R  IV         + L                ++
Sbjct: 126 NV--NDRNLEGETPLIVASK---YGRSEIV---------KKLLELGADI-------SARD 164

Query: 328 NDGLTP 333
             GLT 
Sbjct: 165 LTGLTA 170

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G T L++A A   ++ V+ L+K   A   D+   + IG T L  AA  G +E+ +  ++ 
Sbjct: 47  GLTPLYLATAHGHLEIVEVLLKN-GA---DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+      DK        +   G+ ++ E L
Sbjct: 103 GADVNAQ---DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 49.7 bits (120), Expect = 8e-08
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AA A + D V+ L+    A   D+  ++  G T L+ A A G +E+V+  ++ 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMAN-GA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+  V   D     P+  AA +GH E+ E L
Sbjct: 70  GADVNAV---DAIGFTPLHLAAFIGHLEIAEVL 99

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 35/154 (22%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
               L  AA A + D V+ L+             + +G + L  AA  G     +  +  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMAN----GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL------------YRET-------KNSL 158
                      K    P+  AAS GH  +VE L             + T        N  
Sbjct: 57  GVSRDAR---TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 159 KDDDCIELLVKL---I-ETDSY-ETALHVLARKN 187
              + +ELL+K    +     + +TA  +     
Sbjct: 114 ---EVVELLIKYGADVHTQSKFCKTAFDISIDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
             T LH+AA+    + V+ L+K   A   D+  ++ +  TAL +A      E+V+  ++ 
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKH-GA---DVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
             D+       K        +   G+ ++ E L
Sbjct: 123 GADVHTQ---SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 54/192 (28%)

Query: 95  GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET 154
               L  AA +G  + V+  M      T     D     P+  AA  GH    E L    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT----DWLGTSPLHLAAQYGHFSTTEVL---- 53

Query: 155 KNSLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE 213
                    +   V          T LH+ A +                           
Sbjct: 54  ---------LRAGVSRDARTKVDRTPLHMAASEG-------------------------- 78

Query: 214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDS 273
               +VE+L    L    D +   D    T  H A  +  +E+ + +  I   AD+   +
Sbjct: 79  -HANIVEVL----LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELL--IKYGADV--HT 128

Query: 274 KDKDGNNILHLA 285
           + K       ++
Sbjct: 129 QSKFCKTAFDIS 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 58/418 (13%), Positives = 126/418 (30%), Gaps = 104/418 (24%)

Query: 10  HVYSNPPVEEIRTRRL---------KLYRVALNG------DW------------ARAKVI 42
           H+  +       T RL         ++ +  +         +            +    +
Sbjct: 53  HIIMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 43  YDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI------GC 96
           Y E +D + +          +V    +R+    KL + +    L+L     +      G 
Sbjct: 112 YIEQRDRLYNDNQVF--AKYNV----SRLQPYLKLRQAL----LELRPAKNVLIDGVLGS 161

Query: 97  --TALFYAAASGSVELVKATMEGNED-ITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
             T +  A        V+  M+     + +   +  + +L ++    L +     +  R 
Sbjct: 162 GKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRS 217

Query: 154 ---TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAV 210
              +   L+       L +L+++  YE  L VL   N+    QN +      FNL  K +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NV----QNAKAW--NAFNLSCKIL 269

Query: 211 ENERALELVELLWENFLFKYP--DLIWKFDE-NGHTIFHIAVSNRM----REIFKFI-FE 262
              R  ++ + L                       ++    +  R     RE+       
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 263 ISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQ---LQR------------- 306
           +S +A+ + D      +N  H+      L  +   S+  L+    ++             
Sbjct: 330 LSIIAESIRDGLAT-WDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 307 ------ELLWFQEVKKVVP-------RKFAEEKNNDGLTPG--DLFIKEHEELKKKGE 349
                  L+WF  +K  V        +    EK     T     ++++   +L+ +  
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 25/226 (11%), Positives = 53/226 (23%), Gaps = 55/226 (24%)

Query: 60  TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
             +  AA     +   +L +K   E+ +   ++ I    L         ++    +    
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK-GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIE------- 172
           DI       K+           G  ++                  EL    +E       
Sbjct: 67  DIKSR---TKEGTTLFFPLFQGGGNDITG--------------TTELCKIFLEKGADITA 109

Query: 173 TDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYP 231
                +  +                             V+    + L +L+   F     
Sbjct: 110 LYKPYKIVVFKNIFNY---------------------FVDENEMIPLYKLI---FSQSGL 145

Query: 232 DLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
            L+ K D+ G T        +     K +     +     + K+  
Sbjct: 146 QLLIK-DKWGLTALEFVKRCQKPIALKMM--EDYIKKY--NLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 26/201 (12%), Positives = 42/201 (20%), Gaps = 59/201 (29%)

Query: 97  TALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN 156
             +  AA  G+ E      E   +              +         ++  FL      
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL------ 61

Query: 157 SLKDDDCIELLVKLIETDSY-ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA 215
                  I     +        T    L +                         +    
Sbjct: 62  -------INKGADIKSRTKEGTTLFFPLFQGG---------------------GNDITGT 93

Query: 216 LELVELLWE-----NFLFKYPDLIWKFDENGHTIFHIAVSN------RMREIFKFIFEIS 264
            EL ++  E       L           +    +    + N       M  ++K IF   
Sbjct: 94  TELCKIFLEKGADITAL----------YKPYKIVVFKNIFNYFVDENEMIPLYKLIF-SQ 142

Query: 265 SVADLLFDSKDKDGNNILHLA 285
           S   L    KDK G   L   
Sbjct: 143 SGLQL--LIKDKWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 9/111 (8%), Positives = 25/111 (22%), Gaps = 18/111 (16%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL-----DLAKRNRIGCTALFYAAASG 106
              T+ G T           D           +       D+    +     +F    + 
Sbjct: 69  KSRTKEGTTLFFPLFQGGGNDITGTT---ELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 107 SVELVKATM-------EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
            V+  +          +    + +    DK  +  +           ++ +
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIK---DKWGLTALEFVKRCQKPIALKMM 173

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.8 bits (116), Expect = 9e-07
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +TALH+A  +     +  +V  +   + +L K+   G TAL Y   + + E +K  + G
Sbjct: 169 DETALHLAVRSVDRTSLH-IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIE 165
              I +    ++    P+  A  L H    E L +           +E
Sbjct: 228 KASIEIA---NESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 58  GDTALHVAA-AANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
            +  LH+A   AN+      LV  +      L  +   G TAL YAA     + +K  ++
Sbjct: 190 EELVLHLAVKVANQASLP--LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           G   +  V   ++     +  A    H E  E L
Sbjct: 248 GRALVGTV---NEAGETALDIARKKHHKECEELL 278

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 13/42 (30%)

Query: 75  KKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
           K+ +KK++A +L L            YA  S     +KATME
Sbjct: 19  KQALKKLQA-SLKL------------YADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	396
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-45  Score=352.36  Aligned_cols=314  Identities=20%  Similarity=0.204  Sum_probs=204.9

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||.+++++|+..+.+.. .+..|.||||+|+..|+.+++++|++. +++++.+ +..|.||||+|+..|+.++|++|++.
T Consensus        25 g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~  102 (437)
T 1n11_A           25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLEN  102 (437)
T ss_dssp             TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHhC
Confidence            55666677766654333 455677777777777777777777765 6667666 67777777777777777777777777


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCC
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLK  159 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~  159 (396)
                      |  +++  +..|..|.||||+|+..|+.+++++|++++++   ....+..|.||||+|+..|+.+++++|++.++ .+..
T Consensus       103 g--a~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  175 (437)
T 1n11_A          103 N--ANP--NLATTAGHTPLHIAAREGHVETVLALLEKEAS---QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA  175 (437)
T ss_dssp             T--CCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             C--CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            6  555  66777777777777777777777777777766   33445567777777777777777777777766 4555


Q ss_pred             CcchhHHHHHHhhccc--------------------hhhHHHHHHhcCCCCCCCCCcchhhhhhhccch---------hh
Q 037504          160 DDDCIELLVKLIETDS--------------------YETALHVLARKNLTSSNQNPRGIFQRYFNLGAK---------AV  210 (396)
Q Consensus       160 ~~~g~~~l~~~~~~~~--------------------~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  210 (396)
                      +..|.++|+.++..+.                    +.||||+|+..++.       ++.+.+.+.+..         ++
T Consensus       176 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------~~~~~Ll~~g~~~~~~~~~g~t~  248 (437)
T 1n11_A          176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV-------EVARSLLQYGGSANAESVQGVTP  248 (437)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH-------HHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH-------HHHHHHHHcCCCCCCCCCCCCCH
Confidence            6667777766654322                    25677777766632       333333332211         11


Q ss_pred             ----hhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhh
Q 037504          211 ----ENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAG  286 (396)
Q Consensus       211 ----~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~  286 (396)
                          ......+++++++     ..+.+++..|..|+||||+|++.|+.+++++|+++|++    ++.+|..|+||||+|+
T Consensus       249 L~~A~~~g~~~~v~~Ll-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~  319 (437)
T 1n11_A          249 LHLAAQEGHAEMVALLL-----SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVAS  319 (437)
T ss_dssp             HHHHHHTTCHHHHHHHH-----TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHH-----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHH
Confidence                1111234444443     34566677777777777777777777777777777777    6777777777777777


Q ss_pred             cCCCCCccccccc-------------hhHhHHHHHHHHHHHhhhc-chhhhhhhcCCCCCchhhHHHH
Q 037504          287 KLPPLNRLNIVSV-------------AALQLQRELLWFQEVKKVV-PRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       287 ~~~~~~~~~~l~~-------------~~~~~~~~l~~~~~v~~l~-~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                      ..|+.+++++|..             ++++.+...+..+.|+.|+ .|++++.+|.+|+||+++|.+.
T Consensus       320 ~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          320 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             HcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            7777777777621             4556665555555555555 5677777777777777777654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-45  Score=342.26  Aligned_cols=269  Identities=17%  Similarity=0.174  Sum_probs=236.5

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      ..+..+.++||.|+..|+.+.|+.++...+.+++.. |..|.||||+|+..|+.++|++|++.|  +++  +.+|..|.|
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t   93 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHG--ADV--HAKDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCC
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CccCCCCCc
Confidence            357788999999999999999999999889999888 999999999999999999999999998  776  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhh----
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIE----  172 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~----  172 (396)
                      |||+|+..|+.+++++|+++|++   ++..|..|.||||+|+..|+.+++++|++.++ ....+..|.++++.+..    
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~  170 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR  170 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhH
Confidence            99999999999999999999999   55667799999999999999999999999998 66677778777765532    


Q ss_pred             -------------------------------------ccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          173 -------------------------------------TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       173 -------------------------------------~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                                                           ...+.||||+|+..+                        +...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~------------------------~~~~  226 (351)
T 3utm_A          171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL------------------------HPKR  226 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC------------------------STTH
T ss_pred             HHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh------------------------CccH
Confidence                                                 123468888888875                        3335


Q ss_pred             HHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccc
Q 037504          216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLN  295 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~  295 (396)
                      .++++.++     ..+.+++.+|..|+||||+|++.|+.+++++|+++|++    +|.+|..|+||||+|+..|+.++++
T Consensus       227 ~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~~~v~  297 (351)
T 3utm_A          227 KQVAELLL-----RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----MNALDSLGQTALHRAALAGHLQTCR  297 (351)
T ss_dssp             HHHHHHHH-----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHH-----HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            66666665     46788999999999999999999999999999999999    8999999999999999999999888


Q ss_pred             cccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHhHHHHH
Q 037504          296 IVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKK  346 (396)
Q Consensus       296 ~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~~~~~~  346 (396)
                      +|                   +..|++++.+|..|+||+++|.+....+..
T Consensus       298 ~L-------------------l~~gad~~~~~~~g~tal~~a~~~~~~~l~  329 (351)
T 3utm_A          298 LL-------------------LSYGSDPSIISLQGFTAAQMGNEAVQQILS  329 (351)
T ss_dssp             HH-------------------HHTTCCTTCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HH-------------------HHcCCCCCCcCCCCCChhhhhhHHHHHHHH
Confidence            87                   778999999999999999999665444433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-44  Score=343.23  Aligned_cols=298  Identities=18%  Similarity=0.167  Sum_probs=249.2

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      .+..|.||||+|+..|+.++|++|++. |++++.. +..|.||||+|+..|+.+++++|++.|  +++  +.+|..|+||
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~   83 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNK--AKV--NAKAKDDQTP   83 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHT--CCS--SCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC--CCC--CCCCCCCCCH
Confidence            577899999999999999999999986 8999888 899999999999999999999999998  777  9999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhcc---
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETD---  174 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~---  174 (396)
                      ||+|++.|+.+++++|+++|++   ++..|..|.||||+|+..|+.+++++|++.++ ....+..|.++|+.+...+   
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  160 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNAN---PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  160 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999   55567799999999999999999999999988 5567788999998876543   


Q ss_pred             -----------------chhhHHHHHHhcCCCCCCCCCcchhhhhhhccch---------hh----hhHHHHHHHHHHHH
Q 037504          175 -----------------SYETALHVLARKNLTSSNQNPRGIFQRYFNLGAK---------AV----ENERALELVELLWE  224 (396)
Q Consensus       175 -----------------~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~ll~  224 (396)
                                       .+.||||+|+..++.       ++++.+.+.+..         ++    ......++++.++ 
T Consensus       161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-  232 (437)
T 1n11_A          161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNL-------DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-  232 (437)
T ss_dssp             HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH-------HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH-
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH-------HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence                             347999999998843       444444433322         11    1122345555554 


Q ss_pred             HHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccc-----
Q 037504          225 NFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSV-----  299 (396)
Q Consensus       225 ~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~-----  299 (396)
                          ..+..++..+..|.||||+|+..|+.+++++|+++|++    ++.+|..|.||||+|+..|+.+++++|..     
T Consensus       233 ----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  304 (437)
T 1n11_A          233 ----QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV  304 (437)
T ss_dssp             ----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             ----HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC
Confidence                45777899999999999999999999999999999999    88899999999999999999998888732     


Q ss_pred             --------hhHhHHHHHHHHHHHhhhc-chhhhhhhcCCCCCchhhHHHHh
Q 037504          300 --------AALQLQRELLWFQEVKKVV-PRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       300 --------~~~~~~~~l~~~~~v~~l~-~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                              ++++.+...+..+.|+.|+ .|++++.+|..|.|||++|.+..
T Consensus       305 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g  355 (437)
T 1n11_A          305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG  355 (437)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCC
Confidence                    5788888777777888777 68999999999999999998753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-43  Score=315.22  Aligned_cols=256  Identities=20%  Similarity=0.209  Sum_probs=221.1

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      ..|.||||.|+..|+.+++++|++. +.+++...+..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~   77 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADP--VLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCC--cccCCCCCCHHH
Confidence            4689999999999999999999986 78888776888999999999999999999999998  776  889999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhH
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETA  179 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~  179 (396)
                      +|+..|+.+++++|+++|++   ++..|..|.||||+|+..|+.+++++|++.++ .+........   .......+.||
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~---~~~~~~~g~t~  151 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED---QERLRKGGATA  151 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH---HHHTTCCCCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH---HHhhccCCCcH
Confidence            99999999999999999999   55567799999999999999999999999988 3333111100   01112234899


Q ss_pred             HHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCc----HH
Q 037504          180 LHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRM----RE  255 (396)
Q Consensus       180 L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~----~~  255 (396)
                      ||+|+..+                           ..+++++++    ...+.+++..|..|+||||+|+..++    .+
T Consensus       152 L~~A~~~~---------------------------~~~~v~~Ll----~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  200 (285)
T 1wdy_A          152 LMDAAEKG---------------------------HVEVLKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             HHHHHHHT---------------------------CHHHHHHHH----HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred             HHHHHHcC---------------------------CHHHHHHHH----HhcCCCCCccCCCCCCHHHHHHHccccchHHH
Confidence            99999988                           356666665    34688899999999999999999999    89


Q ss_pred             HHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhc-chhhhhhhcCCCCCch
Q 037504          256 IFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVV-PRKFAEEKNNDGLTPG  334 (396)
Q Consensus       256 ~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~-~~~~~~~~~~~g~tpl  334 (396)
                      ++++|+++|++    ++.+|..|+||||+|+..|+.+++++|                   +. .+++++.+|..|+|||
T Consensus       201 i~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L-------------------l~~~g~~~~~~~~~g~t~l  257 (285)
T 1wdy_A          201 ITHLLLDHGAD----VNVRGERGKTPLILAVEKKHLGLVQRL-------------------LEQEHIEINDTDSDGKTAL  257 (285)
T ss_dssp             HHHHHHHTTCC----SSCCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHSSSCCTTCCCTTSCCHH
T ss_pred             HHHHHHHcCCC----CCCcCCCCCcHHHHHHHcCCHHHHHHH-------------------HhccCCCccccCCCCCcHH
Confidence            99999999999    889999999999999999998888776                   55 7899999999999999


Q ss_pred             hhHHHHh
Q 037504          335 DLFIKEH  341 (396)
Q Consensus       335 ~~a~~~~  341 (396)
                      ++|.+..
T Consensus       258 ~~A~~~~  264 (285)
T 1wdy_A          258 LLAVELK  264 (285)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9998753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-43  Score=315.72  Aligned_cols=244  Identities=16%  Similarity=0.118  Sum_probs=190.8

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCc----------cccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccch
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHK----------DEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDL   88 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~----------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~   88 (396)
                      ....|.|+||+|+..|+.+.+..++...+          ..++.. |..|+||||+|+..|+.+++++|++.|  .++  
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~--   85 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQG--WAV--   85 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHTT--CCS--
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHCC--CCC--
Confidence            45678999999999999888888765422          223444 889999999999999999999999998  776  


Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHH
Q 037504           89 AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLV  168 (396)
Q Consensus        89 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~  168 (396)
                      +.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++....+.+|     
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g-----  157 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-----  157 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTT-----
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCC-----
Confidence            99999999999999999999999999999999   5666779999999999999999999999998832233335     


Q ss_pred             HHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHH
Q 037504          169 KLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIA  248 (396)
Q Consensus       169 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A  248 (396)
                              .||||+|+..|                           ..++++++++     .+.+++.+|..|+||||+|
T Consensus       158 --------~t~L~~A~~~g---------------------------~~~~v~~Ll~-----~g~~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          158 --------ASPIHEAARRG---------------------------HVECVNSLIA-----YGGNIDHKISHLGTPLYLA  197 (285)
T ss_dssp             --------SCHHHHHHHHT---------------------------CHHHHHHHHH-----TTCCTTCCBTTTBCHHHHH
T ss_pred             --------CCHHHHHHHcC---------------------------CHHHHHHHHH-----CCCCCCCcCCCCCCHHHHH
Confidence                    89999999988                           3567776654     5778999999999999999


Q ss_pred             HHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcC
Q 037504          249 VSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNN  328 (396)
Q Consensus       249 ~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~  328 (396)
                      +..|+.+++++|+++|++    ++ .|..|+||||+|+..++.+++++|                   +..|++++.+|.
T Consensus       198 ~~~~~~~~v~~Ll~~ga~----~~-~~~~g~t~L~~A~~~~~~~~v~~L-------------------l~~gad~~~~d~  253 (285)
T 3d9h_A          198 CENQQRACVKKLLESGAD----VN-QGKGQDSPLHAVVRTASEELACLL-------------------MDFGADTQAKNA  253 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCC----TT-CCBTTBCHHHHHHHTTCHHHHHHH-------------------HHTTCCTTCCCT
T ss_pred             HHcCcHHHHHHHHHCCCC----CC-CCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCCCcCC
Confidence            999999999999999999    66 489999999999999999988887                   668999999999


Q ss_pred             CCCCchhhHHH
Q 037504          329 DGLTPGDLFIK  339 (396)
Q Consensus       329 ~g~tpl~~a~~  339 (396)
                      +|+||+++|.+
T Consensus       254 ~g~t~l~~A~~  264 (285)
T 3d9h_A          254 EGKRPVELVPP  264 (285)
T ss_dssp             TSCCGGGGSCT
T ss_pred             CCCCHHHHhcC
Confidence            99999999973

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-41  Score=304.24  Aligned_cols=257  Identities=18%  Similarity=0.151  Sum_probs=221.6

Q ss_pred             CCCCccccccccCCCcc--cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE--EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVK   79 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~   79 (396)
                      |+.+++++++..+++..  .+..|.||||+|+..|+.+++++|++. |.+++.. +..|.||||+|+..|+.+++++|++
T Consensus        16 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (285)
T 1wdy_A           16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56778888888776544  377799999999999999999999986 8999888 8999999999999999999999999


Q ss_pred             HhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCC-------CCCCCcHHHHHHhcCCHHHHHHHHh
Q 037504           80 KMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQD-------DKDRMLPIVGAASLGHTEVVEFLYR  152 (396)
Q Consensus        80 ~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------d~~g~tpLh~A~~~~~~~~v~~Ll~  152 (396)
                      .|  +++  +.+|..|.||||+|+..|+.+++++|+++|++++.....       +..|.||||+|+..|+.+++++|++
T Consensus        94 ~g--~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  169 (285)
T 1wdy_A           94 KG--ADV--NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             TT--CCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cC--CCC--CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            98  776  999999999999999999999999999999996532211       5689999999999999999999998


Q ss_pred             h-cc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhC
Q 037504          153 E-TK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKY  230 (396)
Q Consensus       153 ~-~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~  230 (396)
                      . +. .+..+..|             .||||+|+..++..                       ...++++.++     ..
T Consensus       170 ~~~~~~~~~~~~g-------------~t~l~~a~~~~~~~-----------------------~~~~i~~~Ll-----~~  208 (285)
T 1wdy_A          170 EMGADVNACDNMG-------------RNALIHALLSSDDS-----------------------DVEAITHLLL-----DH  208 (285)
T ss_dssp             TSCCCTTCCCTTS-------------CCHHHHHHHCSCTT-----------------------THHHHHHHHH-----HT
T ss_pred             hcCCCCCccCCCC-------------CCHHHHHHHccccc-----------------------hHHHHHHHHH-----Hc
Confidence            7 65 45556666             89999999987321                       1245555544     46


Q ss_pred             CcccccccCCCCcHHHHHHHcCcHHHHHHHHh-hccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHH
Q 037504          231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIFE-ISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELL  309 (396)
Q Consensus       231 ~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~  309 (396)
                      +.+++.+|..|+||||+|++.|+.+++++|++ .|++    ++.+|..|+||||+|++.++.+++++|            
T Consensus       209 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~L------------  272 (285)
T 1wdy_A          209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELL------------  272 (285)
T ss_dssp             TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH------------
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHHH------------
Confidence            88899999999999999999999999999999 8998    889999999999999999999988887            


Q ss_pred             HHHHHhhhcchhhhhhhcC
Q 037504          310 WFQEVKKVVPRKFAEEKNN  328 (396)
Q Consensus       310 ~~~~v~~l~~~~~~~~~~~  328 (396)
                             +..|++++.+|.
T Consensus       273 -------l~~Ga~~~~~d~  284 (285)
T 1wdy_A          273 -------CKRGASTDCGDL  284 (285)
T ss_dssp             -------HHHSSCSCCSSC
T ss_pred             -------HHcCCCCCcccc
Confidence                   668888888773

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.7e-42  Score=302.29  Aligned_cols=223  Identities=19%  Similarity=0.150  Sum_probs=172.6

Q ss_pred             ccccccchHHHHHHHcC-------------CHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhc
Q 037504           18 EEIRTRRLKLYRVALNG-------------DWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE   84 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g-------------~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   84 (396)
                      .+|..|.||||+|+..|             +.++++.|++. +.+++...|..|.||||+|+..|+.++|++|++.|  +
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~   81 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS--A   81 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT--C
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--C
Confidence            36788999999999988             89999999986 77776655899999999999999999999999998  7


Q ss_pred             ccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcc
Q 037504           85 NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE-DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDD  162 (396)
Q Consensus        85 ~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~  162 (396)
                      ++  +.+|..|+||||+|+..|+.+++++|+++++ +   ++..|..|.||||+|+..|+.+++++|++.++ .+..+..
T Consensus        82 ~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~  156 (253)
T 1yyh_A           82 DA--NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD---LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL  156 (253)
T ss_dssp             CT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC---TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTT
T ss_pred             CC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCC
Confidence            76  9999999999999999999999999999987 5   56667799999999999999999999999988 5556666


Q ss_pred             hhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCC
Q 037504          163 CIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH  242 (396)
Q Consensus       163 g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~  242 (396)
                      |             .||||+|+..+                           ..++++.|++     .+.+++.+|..|+
T Consensus       157 g-------------~t~L~~A~~~~---------------------------~~~~v~~Ll~-----~ga~~~~~~~~g~  191 (253)
T 1yyh_A          157 G-------------KSALHWAAAVN---------------------------NVDAAVVLLK-----NGANKDMQNNREE  191 (253)
T ss_dssp             S-------------CBHHHHHHHHT---------------------------CHHHHHHHHH-----TTCCTTCCCTTSC
T ss_pred             C-------------CCHHHHHHHcC---------------------------CHHHHHHHHH-----cCCCCCCcCCCCC
Confidence            6             89999999988                           3667776654     5888999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          243 TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       243 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|++.|+.+++.+|
T Consensus       192 tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          192 TPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCC----ccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999    889999999999999999999988877

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.7e-41  Score=295.05  Aligned_cols=226  Identities=17%  Similarity=0.141  Sum_probs=199.3

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHH---hCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCC
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYD---EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI   94 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~   94 (396)
                      ..|..|.||||+|+..|+.+++++|++   ..+.+++.. |..|.||||+|+..|+.+++++|++.|  +++  +.+|..
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~   78 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAG--ASP--MALDRH   78 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHcC--CCc--cccCCC
Confidence            467889999999999999999999997   468889888 999999999999999999999999998  776  889999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCc-cccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCC-cchhHHHHHHh
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDIT-MVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKD-DDCIELLVKLI  171 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~-~~g~~~l~~~~  171 (396)
                      |.||||+|+..|+.+++++|++.++... .++..|..|.||||+|+..|+.+++++|++.++ .+..+ ..|        
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g--------  150 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG--------  150 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTC--------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC--------
Confidence            9999999999999999999999987210 155667799999999999999999999999998 33333 455        


Q ss_pred             hccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHc
Q 037504          172 ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSN  251 (396)
Q Consensus       172 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~  251 (396)
                           .||||+|+..+                           ..++++.+++     .+.+++.+|..|+||||+|+..
T Consensus       151 -----~t~L~~A~~~~---------------------------~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          151 -----RSPLIHAVENN---------------------------SLSMVQLLLQ-----HGANVNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             -----CCHHHHHHHTT---------------------------CHHHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHH
T ss_pred             -----CcHHHHHHHcC---------------------------CHHHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHc
Confidence                 89999999988                           3677776664     5788999999999999999999


Q ss_pred             CcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          252 RMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       252 ~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      |+.+++++|+++|++    ++.+|..|+||||+|+..|+.++++.|
T Consensus       194 ~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          194 GLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             CCHHHHHHHHhcCCC----CCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence            999999999999999    889999999999999999998888876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.4e-42  Score=319.03  Aligned_cols=252  Identities=16%  Similarity=0.071  Sum_probs=212.9

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCC
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGC   96 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~   96 (396)
                      ...|..|.||||+||..|+.++|++|++. |++++.. |..|.||||+|+..|+.++|++|++.|  +++    .+..|.
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~----~~~~g~   85 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVG--EVH----SLWHGQ   85 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHC--CCC----CCBTTB
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHCC--CCc----cccCCC
Confidence            44688899999999999999999999986 8999988 999999999999999999999999998  544    335799


Q ss_pred             cHHHHHHHcCCHHHHHHHHhc----CCCCcc--------------ccCCCCCCCcHHHHHHhcC--CHHHHHHHHhhcc-
Q 037504           97 TALFYAAASGSVELVKATMEG----NEDITM--------------VPQDDKDRMLPIVGAASLG--HTEVVEFLYRETK-  155 (396)
Q Consensus        97 tpLh~A~~~g~~~~v~~Ll~~----g~~~~~--------------~~~~d~~g~tpLh~A~~~~--~~~~v~~Ll~~~~-  155 (396)
                      ||||+|+..|+.+++++|++.    |++++.              ++..|..|.||||+|+..|  +.+++++|++.++ 
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~  165 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS  165 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            999999999999999999999    776432              0115668999999999999  9999999999998 


Q ss_pred             cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 037504          156 NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW  235 (396)
Q Consensus       156 ~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~  235 (396)
                      .+..+..|             .||||+|+..|                           ..+++++|++......+..++
T Consensus       166 ~~~~d~~g-------------~t~L~~A~~~g---------------------------~~~~v~~Ll~~g~~~~~~~~~  205 (364)
T 3ljn_A          166 PTAKDKAD-------------ETPLMRAMEFR---------------------------NREALDLMMDTVPSKSSLRLD  205 (364)
T ss_dssp             TTCCCTTS-------------CCHHHHHHHTT---------------------------CHHHHHHHHHHCSCSSSCCTT
T ss_pred             CcccCCCC-------------CCHHHHHHHcC---------------------------CHHHHHHHHhccccccccccc
Confidence            56666677             89999999998                           367777777642212223389


Q ss_pred             cccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHh
Q 037504          236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVK  315 (396)
Q Consensus       236 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~  315 (396)
                      ..|..|+||||+|+..|+.+++++|+++|++    +|.+|..|+||||+|+..|+.+++++|                  
T Consensus       206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~g~~~~v~~L------------------  263 (364)
T 3ljn_A          206 YANKQGNSHLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLYLSVRAAMVLLTKEL------------------  263 (364)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC----TTCCCTTSCCHHHHHHHTCCHHHHHHH------------------
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHhChHHHHHHH------------------
Confidence            9999999999999999999999999999999    899999999999999999999999887                  


Q ss_pred             hhcchhhhh------------hhcCCCCCchhhHHH
Q 037504          316 KVVPRKFAE------------EKNNDGLTPGDLFIK  339 (396)
Q Consensus       316 ~l~~~~~~~------------~~~~~g~tpl~~a~~  339 (396)
                       +..+++++            ..+..|+||+..|..
T Consensus       264 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~  298 (364)
T 3ljn_A          264 -LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA  298 (364)
T ss_dssp             -HHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC
T ss_pred             -HHcCCchhhhcCcccCcccccccccccccchhhhh
Confidence             33343332            367788999987764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.2e-41  Score=303.14  Aligned_cols=249  Identities=17%  Similarity=0.090  Sum_probs=181.2

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccc---cccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCC
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDE---IGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIG   95 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g   95 (396)
                      .+..|.||||+|+..|+.++|++|++. +.+   ++.+ +..|+||||+|+..|+.++|++|++.|  +++  +.+|..|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~--~~~~~~g   78 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAG--AGV--LVAERGG   78 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCS--SCCCTTS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CCCCCCC
Confidence            578899999999999999999999986 555   7777 899999999999999999999999998  777  8999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCccc----------cCCCCCCCcHHHHHHhcCCHHHHH-HHHhhcc-cCCCCcch
Q 037504           96 CTALFYAAASGSVELVKATMEGNEDITMV----------PQDDKDRMLPIVGAASLGHTEVVE-FLYRETK-NSLKDDDC  163 (396)
Q Consensus        96 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~d~~g~tpLh~A~~~~~~~~v~-~Ll~~~~-~~~~~~~g  163 (396)
                      .||||+|+..|+.+++++|+++|++....          ......+.++++.++..+...... .+...+. .+..+..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            99999999999999999999998863211          111224567777776665443333 3333333 34455555


Q ss_pred             hHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC-CCC
Q 037504          164 IELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE-NGH  242 (396)
Q Consensus       164 ~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~-~g~  242 (396)
                                   .||||+|+..|                           ..+++++|++     .+.+++..+. .|+
T Consensus       159 -------------~t~L~~A~~~g---------------------------~~~~v~~Ll~-----~g~~~~~~~~~~g~  193 (282)
T 1oy3_D          159 -------------HTPLHVAVIHK---------------------------DAEMVRLLRD-----AGADLNKPEPTCGR  193 (282)
T ss_dssp             -------------CCHHHHHHHTT---------------------------CHHHHHHHHH-----HTCCTTCCCTTTCC
T ss_pred             -------------cCHHHHHHHcC---------------------------CHHHHHHHHH-----cCCCCCCCCCCCCc
Confidence                         89999999988                           3677777765     3677888875 499


Q ss_pred             cHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhh
Q 037504          243 TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKF  322 (396)
Q Consensus       243 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~  322 (396)
                      ||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..|+.+++++|                   +.+|++
T Consensus       194 tpL~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~~v~~L-------------------l~~ga~  250 (282)
T 1oy3_D          194 TPLHLAVEAQAASVLELLLKAGAD----PTARMYGGRTPLGSALLRPNPILARLL-------------------RAHGAP  250 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHTSSCHHHHHHH-------------------HHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC----CcccccCCCCHHHHHHHcCCcHHHHHH-------------------HHcCCC
Confidence            999999999999999999999999    889999999999999999999988887                   778999


Q ss_pred             hhhhcCCCCCchhhHHHHh
Q 037504          323 AEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       323 ~~~~~~~g~tpl~~a~~~~  341 (396)
                      ++.+|..|.||+++|....
T Consensus       251 ~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          251 EPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CCCCC--------------
T ss_pred             cCcCCCcccccccccCCcc
Confidence            9999999999999997644

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-41  Score=304.66  Aligned_cols=250  Identities=19%  Similarity=0.151  Sum_probs=207.9

Q ss_pred             CCcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCC
Q 037504           15 PPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI   94 (396)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~   94 (396)
                      .....+..|.||||.||..|+.++|+.|++. |.+++.. |..|.||||+|+..|+.++|++|++.|  +++  +.+|..
T Consensus        32 ~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~--~~~~~~  105 (299)
T 1s70_B           32 KKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVENG--ANI--NQPDNE  105 (299)
T ss_dssp             SCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTT
T ss_pred             cccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC--CCCCCC
Confidence            3444577889999999999999999999986 8999988 999999999999999999999999998  776  999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhcc
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETD  174 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~  174 (396)
                      |.||||+|+..|+.+++++|+++|++   ++..|..|.||||+|+..++.+++++++............           
T Consensus       106 g~tpL~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~-----------  171 (299)
T 1s70_B          106 GWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK-----------  171 (299)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH-----------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhh-----------
Confidence            99999999999999999999999999   5566779999999999999999999998765422110000           


Q ss_pred             chhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcH
Q 037504          175 SYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMR  254 (396)
Q Consensus       175 ~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~  254 (396)
                      ...+++                                   ...    +..++..........+..|.||||+|+..|+.
T Consensus       172 ~~~~~~-----------------------------------~~~----~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~  212 (299)
T 1s70_B          172 EEERIM-----------------------------------LRD----ARQWLNSGHINDVRHAKSGGTALHVAAAKGYT  212 (299)
T ss_dssp             HHHHHH-----------------------------------HHH----HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhhhHH-----------------------------------HHH----HHHHHhccCcchhhhcCCCCCHHHHHHHCCcH
Confidence            001111                                   111    12223444555556678999999999999999


Q ss_pred             HHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCch
Q 037504          255 EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPG  334 (396)
Q Consensus       255 ~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl  334 (396)
                      +++++|+++|++    +|.+|..|+||||+|+..|+.+++++|                   +..|++++.+|..|+||+
T Consensus       213 ~~v~~Ll~~g~d----~~~~d~~g~tpL~~A~~~~~~~~v~~L-------------------l~~gad~~~~d~~g~t~l  269 (299)
T 1s70_B          213 EVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRIL-------------------VENLCDMEAVNKVGQTAF  269 (299)
T ss_dssp             HHHHHHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH-------------------HHTTCCTTCCCTTSCCTT
T ss_pred             HHHHHHHHcCCC----CCCcCCCCCcHHHHHHhcCCHHHHHHH-------------------HHcCCCCCCcCCCCCCHH
Confidence            999999999999    889999999999999999999988887                   678999999999999999


Q ss_pred             hhHHHHhHHHHH
Q 037504          335 DLFIKEHEELKK  346 (396)
Q Consensus       335 ~~a~~~~~~~~~  346 (396)
                      ++|.+...+...
T Consensus       270 ~~A~~~~~~~l~  281 (299)
T 1s70_B          270 DVADEDILGYLE  281 (299)
T ss_dssp             TSCCSGGGHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999765444433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-41  Score=315.01  Aligned_cols=239  Identities=19%  Similarity=0.170  Sum_probs=206.5

Q ss_pred             CCCccccccccCCCcccccccchHHHHHHHcCCHHHHHHHHH-------hCccccccccCCCCchHHHHHHHcCCHHHHH
Q 037504            3 HSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYD-------EHKDEIGDVITRLGDTALHVAAAANRIDFVK   75 (396)
Q Consensus         3 h~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~-------~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~   75 (396)
                      +..+++++...+.+...+..|.||||+|+..|+.++++.|+.       +.|++++.. |..|.||||+|+..|+.++|+
T Consensus       105 ~~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-d~~g~TpL~~A~~~g~~~iv~  183 (373)
T 2fo1_E          105 SYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVA  183 (373)
T ss_dssp             SSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred             CchHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-CCCCCCHHHHHHHcChHHHHH
Confidence            345667776655555555789999999999999988887773       468999988 999999999999999999999


Q ss_pred             HHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcC---CCCccccCCCCCCCcHHHHHHhcC---CHHHHHH
Q 037504           76 KLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN---EDITMVPQDDKDRMLPIVGAASLG---HTEVVEF  149 (396)
Q Consensus        76 ~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g---~~~~~~~~~d~~g~tpLh~A~~~~---~~~~v~~  149 (396)
                      +|++.|  +++  +.+|..|.||||+|+..|+.+++++|++++   ++   ++..|..|.||||+|+..+   +.+++++
T Consensus       184 ~Ll~~g--a~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~d~~g~t~L~~A~~~~~~~~~~~v~~  256 (373)
T 2fo1_E          184 YLMKAG--ADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD---IEELDRNGMTALMIVAHNEGRDQVASAKL  256 (373)
T ss_dssp             HHHHTT--CCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT---TSCCCTTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred             HHHHCC--CCC--cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC---hhhcCCCCCCHHHHHHHhCCcchHHHHHH
Confidence            999998  776  889999999999999999999999999988   56   5666779999999999988   8999999


Q ss_pred             HHhhcc-cCC--------CCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHH
Q 037504          150 LYRETK-NSL--------KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVE  220 (396)
Q Consensus       150 Ll~~~~-~~~--------~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (396)
                      |++.++ .+.        .+..|             .||||+|+..|                           ..++++
T Consensus       257 Ll~~g~~~~~~~~~~~~~~d~~g-------------~t~Lh~A~~~g---------------------------~~~~v~  296 (373)
T 2fo1_E          257 LVEKGAKVDYDGAARKDSEKYKG-------------RTALHYAAQVS---------------------------NMPIVK  296 (373)
T ss_dssp             HHHHTCCSSCCSGGGTSSSSCCC-------------CCTHHHHHSSC---------------------------CHHHHH
T ss_pred             HHHCCCCcccccccccCcccccC-------------CCHHHHHHHhC---------------------------CHHHHH
Confidence            999988 332        22344             89999999998                           367777


Q ss_pred             HHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          221 LLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       221 ~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      +|++    ..+.+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..|+.+++++|
T Consensus       297 ~Ll~----~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad----~~~~d~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          297 YLVG----EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             HHHH----HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHH----hcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7664    46688999999999999999999999999999999999    889999999999999999999988887

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-42  Score=321.30  Aligned_cols=248  Identities=19%  Similarity=0.154  Sum_probs=207.8

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHH--------HHhhhcccchh
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLV--------KKMKAENLDLA   89 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~d~~   89 (396)
                      ..+..|.||||+|+..|. ++++.|+.   .+++...+..|+||||+|+..|+.+++++|+        +.|  +++  +
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g--a~v--n  160 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG--ADV--N  160 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC--CCT--T
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC--CCC--c
Confidence            568889999999999654 67776653   4677773379999999999999998888877        455  555  9


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhc---c-cCCCCcchhH
Q 037504           90 KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET---K-NSLKDDDCIE  165 (396)
Q Consensus        90 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~---~-~~~~~~~g~~  165 (396)
                      .+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||||+|+..|+.+++++|++.+   . .+..+..|  
T Consensus       161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g--  235 (373)
T 2fo1_E          161 AMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG--  235 (373)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS--
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHCCCC---CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC--
Confidence            9999999999999999999999999999999   5566779999999999999999999999987   3 44556666  


Q ss_pred             HHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCccccc--------c
Q 037504          166 LLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWK--------F  237 (396)
Q Consensus       166 ~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~--------~  237 (396)
                                 .||||+|+..+                        .....++++.+++.     +.+++.        .
T Consensus       236 -----------~t~L~~A~~~~------------------------~~~~~~~v~~Ll~~-----g~~~~~~~~~~~~~~  275 (373)
T 2fo1_E          236 -----------MTALMIVAHNE------------------------GRDQVASAKLLVEK-----GAKVDYDGAARKDSE  275 (373)
T ss_dssp             -----------CCHHHHHHHSC------------------------STTHHHHHHHHHHH-----TCCSSCCSGGGTSSS
T ss_pred             -----------CCHHHHHHHhC------------------------CcchHHHHHHHHHC-----CCCcccccccccCcc
Confidence                       89999999876                        22246777777754     445554        6


Q ss_pred             cCCCCcHHHHHHHcCcHHHHHHHHhhc-cccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhh
Q 037504          238 DENGHTIFHIAVSNRMREIFKFIFEIS-SVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKK  316 (396)
Q Consensus       238 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~  316 (396)
                      |..|+||||+|+..|+.+++++|++++ ++    +|.+|..|+||||+|+..|+.+++++|                   
T Consensus       276 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~----~n~~d~~g~TpL~~A~~~g~~~iv~~L-------------------  332 (373)
T 2fo1_E          276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSN----KDKQDEDGKTPIMLAAQEGRIEVVMYL-------------------  332 (373)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCC----TTCCCTTCCCHHHHHHHHTCHHHHHHH-------------------
T ss_pred             cccCCCHHHHHHHhCCHHHHHHHHHhcCCC----ccCcCCCCCCHHHHHHHcCCHHHHHHH-------------------
Confidence            779999999999999999999999886 88    899999999999999999999988887                   


Q ss_pred             hcchhhhhhhcCCCCCchhhHHHHh
Q 037504          317 VVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       317 l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      +..|++++.+|..|+|||++|.+..
T Consensus       333 l~~gad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          333 IQQGASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             HHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HHcCCCccCCCCCCCCHHHHHHHcC
Confidence            6789999999999999999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.7e-40  Score=289.69  Aligned_cols=220  Identities=23%  Similarity=0.233  Sum_probs=198.5

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      ..+.+|||.|+..|+.+.++++++..+..++.. +..|.||||+|+..|+.+++++|++.|  .++  +.+|..|.||||
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~   78 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLG--VPV--NDKDDAGWSPLH   78 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCS--CCCCTTSCCHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHhC--CCC--CCcCCCCCCHHH
Confidence            347899999999999999999999877777776 999999999999999999999999998  766  899999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhH
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETA  179 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~  179 (396)
                      +|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.+. .+..+..|             .||
T Consensus        79 ~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-------------~t~  142 (231)
T 3aji_A           79 IAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD-------------ATA  142 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-------------CCH
T ss_pred             HHHHcCHHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-------------CcH
Confidence            99999999999999999999   55667799999999999999999999999988 55556666             899


Q ss_pred             HHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHH
Q 037504          180 LHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKF  259 (396)
Q Consensus       180 L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~  259 (396)
                      ||+|+..+                           ..++++.+++     .+.+++.+|..|+||||+|+..|+.+++++
T Consensus       143 L~~A~~~~---------------------------~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  190 (231)
T 3aji_A          143 MHRAAAKG---------------------------NLKMVHILLF-----YKASTNIQDTEGNTPLHLACDEERVEEAKF  190 (231)
T ss_dssp             HHHHHHHT---------------------------CHHHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcC---------------------------CHHHHHHHHh-----cCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence            99999988                           3677776654     678899999999999999999999999999


Q ss_pred             HHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          260 IFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       260 Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      |+++|++    ++.+|..|.||||+|+..++.+++++|
T Consensus       191 Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          191 LVTQGAS----IYIENKEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             HHHTTCC----SCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             HHHCCCC----CCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence            9999999    889999999999999998887776665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.6e-40  Score=296.31  Aligned_cols=223  Identities=19%  Similarity=0.188  Sum_probs=197.3

Q ss_pred             cCCCcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc
Q 037504           13 SNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN   92 (396)
Q Consensus        13 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d   92 (396)
                      ..+...++..|.||||+|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|++.|  +++  +.+|
T Consensus        49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~--~~~~  122 (285)
T 3d9h_A           49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TADHVSPLHEACLGGHLSCVKILLKHG--AQV--NGVT  122 (285)
T ss_dssp             CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEE-CTTCCCHHHHHHHTTCHHHHHHHHHTT--CCS--SCCC
T ss_pred             hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHCCcHHHHHHHHHCC--CCC--CCCC
Confidence            344456788999999999999999999999986 8999988 999999999999999999999999998  776  9999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHh
Q 037504           93 RIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLI  171 (396)
Q Consensus        93 ~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~  171 (396)
                      ..|.||||+|+..|+.+++++|+++|++++   . +..|.||||+|+..|+.+++++|++.++ .+..+..|        
T Consensus       123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g--------  190 (285)
T 3d9h_A          123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQ---P-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL--------  190 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSS---C-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTT--------
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHHCCCCCC---C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--------
Confidence            999999999999999999999999999854   2 3469999999999999999999999998 55566666        


Q ss_pred             hccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHc
Q 037504          172 ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSN  251 (396)
Q Consensus       172 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~  251 (396)
                           .||||+|+..+                           ..++++.|++     .+.+++. |..|+||||+|+..
T Consensus       191 -----~t~L~~A~~~~---------------------------~~~~v~~Ll~-----~ga~~~~-~~~g~t~L~~A~~~  232 (285)
T 3d9h_A          191 -----GTPLYLACENQ---------------------------QRACVKKLLE-----SGADVNQ-GKGQDSPLHAVVRT  232 (285)
T ss_dssp             -----BCHHHHHHHTT---------------------------CHHHHHHHHH-----TTCCTTC-CBTTBCHHHHHHHT
T ss_pred             -----CCHHHHHHHcC---------------------------cHHHHHHHHH-----CCCCCCC-CCCCCCHHHHHHHc
Confidence                 89999999998                           3677777664     4677774 88999999999999


Q ss_pred             CcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          252 RMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       252 ~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+.  +.+++++|
T Consensus       233 ~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~--~~~~~~~L  272 (285)
T 3d9h_A          233 ASEELACLLMDFGAD----TQAKNAEGKRPVELVPP--ESPLAQLF  272 (285)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTSCCGGGGSCT--TSHHHHHH
T ss_pred             CCHHHHHHHHHCCCC----CCCcCCCCCCHHHHhcC--ccHHHHHH
Confidence            999999999999999    88999999999999994  34555554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.7e-40  Score=288.74  Aligned_cols=216  Identities=22%  Similarity=0.273  Sum_probs=196.3

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      ++..|.||||+|+..|+.+++++|++. |.+++.. +..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~   80 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAG--ALV--DPKDAEGSTC   80 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTT--CCC--CCCCTTSCCH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCC--CCC--CCCCCCCCcH
Confidence            577899999999999999999999986 8999888 899999999999999999999999998  776  8899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccch
Q 037504           99 LFYAAASGSVELVKATMEGN-EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSY  176 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~  176 (396)
                      ||+|+..|+.+++++|++.| .+   ++..|..|.||||+|+..|+.+++++|++.++ .+..+..|             
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-------------  144 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMD---VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE-------------  144 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-------------
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC---cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC-------------
Confidence            99999999999999999998 55   55667799999999999999999999999998 55566666             


Q ss_pred             hhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHH
Q 037504          177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREI  256 (396)
Q Consensus       177 ~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~  256 (396)
                      .||||+|+..+                           ..+++++++     ..+.+++.+|..|.||||+|++.|+.++
T Consensus       145 ~t~L~~A~~~~---------------------------~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~~  192 (237)
T 3b7b_A          145 NICLHWAAFSG---------------------------CVDIAEILL-----AAKCDLHAVNIHGDSPLHIAARENRYDC  192 (237)
T ss_dssp             CCHHHHHHHHC---------------------------CHHHHHHHH-----TTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHCC---------------------------CHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHhCCHhH
Confidence            89999999988                           356676665     4578899999999999999999999999


Q ss_pred             HHHHHhhccccccccccccCCCCchhhhhhcCCCCC
Q 037504          257 FKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLN  292 (396)
Q Consensus       257 v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~  292 (396)
                      +++|+++|++    ++.+|+.|+||||+|+..++.+
T Consensus       193 v~~Ll~~gad----~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          193 VVLFLSRDSD----VTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             HHHHHTTTCC----TTCCCTTSCCHHHHSCTTCHHH
T ss_pred             HHHHHHcCCC----CCccCCCCCCHHHHHHHHHHHH
Confidence            9999999999    8899999999999999998754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.1e-40  Score=302.83  Aligned_cols=158  Identities=23%  Similarity=0.233  Sum_probs=133.5

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      .+..|.|+||.|++.|+.++|+.||+. |+++|.+.+..|+||||+|+..|+.++|++|+++|  +++  +.++..+.+|
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~--~~~~~~~~~~   95 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADP--VLRKKNGATP   95 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCCH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--Cch--hhhccCCCch
Confidence            456689999999999999999999986 89999884556999999999999999999999998  777  9999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYE  177 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~  177 (396)
                      ++.++..+...++..+++.+++   ++..|..|.||||+|+..|+.+++++|++.++ .+.........   ......+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~---~~~~~~g~  169 (337)
T 4g8k_A           96 FILAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ---ERLRKGGA  169 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC--------CTTCSC
T ss_pred             hHHHHhcccchhhHHhhhccch---hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc---ccccCCCC
Confidence            9999999999999999999999   55667899999999999999999999999998 33322211100   01122347


Q ss_pred             hHHHHHHhcC
Q 037504          178 TALHVLARKN  187 (396)
Q Consensus       178 t~L~~a~~~~  187 (396)
                      ||||+|++.|
T Consensus       170 T~L~~A~~~g  179 (337)
T 4g8k_A          170 TALMDAAEKG  179 (337)
T ss_dssp             CHHHHHHHHT
T ss_pred             cHHHHHHHCC
Confidence            9999999988

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-39  Score=283.92  Aligned_cols=213  Identities=19%  Similarity=0.234  Sum_probs=187.9

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhc-ccCCCCcHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAK-RNRIGCTALFY  101 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~-~d~~g~tpLh~  101 (396)
                      |.||||+|+..|+.++++.|++..+...+.. |..|.||||+|+..|+.+++++|++.+  ++++++. .|..|.||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKM--ENVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTC--TTCCGGGCCCTTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhcc--ccccccccCCCCCCCHHHH
Confidence            7899999999999999999999854444445 999999999999999999999999998  5565577 89999999999


Q ss_pred             HHHcCCHHHHHHHHhcC--CCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhh
Q 037504          102 AAASGSVELVKATMEGN--EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYET  178 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g--~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t  178 (396)
                      |+..|+.+++++|+++|  ++   ++..|..|.||||+|+..|+.+++++|++.++ .+..+..|             .|
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-------------~t  142 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPD---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-------------QI  142 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS-------------CC
T ss_pred             HHHcCCHHHHHHHHhCCCCcc---cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCC-------------CC
Confidence            99999999999999999  66   66677799999999999999999999999988 55666666             89


Q ss_pred             HHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHH
Q 037504          179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFK  258 (396)
Q Consensus       179 ~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~  258 (396)
                      |||+|+..+                           ..++++.+++    ..+.+++.+|..|+||||+|+..|+.++++
T Consensus       143 ~L~~A~~~~---------------------------~~~~v~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          143 PLHRAASVG---------------------------SLKLIELLCG----LGKSAVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHHHHHHTT---------------------------CHHHHHHHHT----TTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcC---------------------------CHHHHHHHHh----cCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999988                           3566666653    333889999999999999999999999999


Q ss_pred             HHH-hhccccccccccccCCCCchhhhhhcCC
Q 037504          259 FIF-EISSVADLLFDSKDKDGNNILHLAGKLP  289 (396)
Q Consensus       259 ~Ll-~~g~~~~~~~n~~d~~g~TpLh~A~~~~  289 (396)
                      +|+ +.|++    ++.+|..|+||||+|+..+
T Consensus       192 ~Ll~~~ga~----~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          192 LLVEKYGAE----YDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHHHHHCCC----SCCBCTTSCBGGGGCSSTT
T ss_pred             HHHHhcCCC----CCccCCCCCcHHHHHHHHH
Confidence            999 89999    8899999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=296.37  Aligned_cols=217  Identities=18%  Similarity=0.176  Sum_probs=165.9

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHhCcc-------ccccccCCCCchHHHHHHHcCCH-HHHHHHHHHhhhcccch
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKD-------EIGDVITRLGDTALHVAAAANRI-DFVKKLVKKMKAENLDL   88 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~-------~~~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~d~   88 (396)
                      ..+|..+.++|+.||..|+.++|+.||+....       .++.. +..|.||||.|+..+.. .++++|++.|  +++  
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--adv--   79 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPASG--LGV--   79 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CC--CCT--
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHCC--CCC--
Confidence            34677889999999999999999999976322       13444 77899999999998876 4889999988  776  


Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHH
Q 037504           89 AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELL  167 (396)
Q Consensus        89 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l  167 (396)
                      |.+|.+|+||||+|+..|+.+++++|++.|++   +...+..|.||+|+|+..++.+++++|++.++ .+..+..|    
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g----  152 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG----  152 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC----
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCC----
Confidence            99999999999999999999999999999999   55667799999999999999999999999998 66677777    


Q ss_pred             HHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHH
Q 037504          168 VKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHI  247 (396)
Q Consensus       168 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~  247 (396)
                               .||||+|+..|+                           .++++.|++     .+.++|.+|..|+||||+
T Consensus       153 ---------~TpL~~A~~~g~---------------------------~~~v~~Ll~-----~gadvn~~~~~g~t~Lh~  191 (269)
T 4b93_B          153 ---------NTPLIYACSGGH---------------------------HELVALLLQ-----HGASINASNNKGNTALHE  191 (269)
T ss_dssp             ---------CCHHHHHHHTTC---------------------------GGGHHHHHH-----TTCCTTCBCTTSCBHHHH
T ss_pred             ---------CCHHHHHHHCCC---------------------------HHHHHHHHH-----CCCCCCccccCCCcHHHH
Confidence                     899999999983                           456666653     688899999999999999


Q ss_pred             HHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCC
Q 037504          248 AVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPP  290 (396)
Q Consensus       248 A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~  290 (396)
                      |+..|+.++|++|+++|++    +|.+|..|+||||+|+++++
T Consensus       192 A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          192 AVIEKHVFVVELLLLHGAS----VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999    89999999999999998775

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.5e-40  Score=294.41  Aligned_cols=223  Identities=17%  Similarity=0.180  Sum_probs=164.1

Q ss_pred             ccccccCCCCchHHHHHHHcC-------------CHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 037504           49 EIGDVITRLGDTALHVAAAAN-------------RIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM  115 (396)
Q Consensus        49 ~~~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  115 (396)
                      ++|.+ |.+|+||||+|+..|             +.+++++|++.|  +++ .+..|..|.||||+|+..|+.+++++|+
T Consensus         2 dvn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g--~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            2 DVNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--ASL-HNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc--CCc-ccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            56777 899999999999987             899999999998  655 2346899999999999999999999999


Q ss_pred             hcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc--cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCC
Q 037504          116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK--NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQ  193 (396)
Q Consensus       116 ~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~--~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~  193 (396)
                      ++|++   ++.+|..|.||||+|+..|+.+++++|++.++  .+..+..|             .||||+|+..++     
T Consensus        78 ~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-------------~t~L~~A~~~~~-----  136 (253)
T 1yyh_A           78 EASAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-------------TTPLILAARLAV-----  136 (253)
T ss_dssp             HTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTC-------------CCHHHHHHHHTC-----
T ss_pred             HcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC-------------CcHHHHHHHcCh-----
Confidence            99999   55667799999999999999999999999987  34455566             899999999883     


Q ss_pred             CCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcccccccccc
Q 037504          194 NPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDS  273 (396)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~  273 (396)
                                            .++++.+++     .+.+++.+|..|+||||+|+..|+.+++++|+++|++    ++.
T Consensus       137 ----------------------~~~v~~Ll~-----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~  185 (253)
T 1yyh_A          137 ----------------------EGMLEDLIN-----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDM  185 (253)
T ss_dssp             ----------------------SSHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTC
T ss_pred             ----------------------HHHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCC
Confidence                                  456665553     5788999999999999999999999999999999999    889


Q ss_pred             ccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh-HHHHH
Q 037504          274 KDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH-EELKK  346 (396)
Q Consensus       274 ~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~-~~~~~  346 (396)
                      +|..|+||||+|+..|+.+++++|                   +..|++++.+|..|+||+++|.+.. .++++
T Consensus       186 ~~~~g~tpL~~A~~~~~~~~v~~L-------------------l~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~  240 (253)
T 1yyh_A          186 QNNREETPLFLAAREGSYETAKVL-------------------LDHFANRDITDHMDRLPRDIAQERMHHDIVR  240 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHH-------------------HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHH-------------------HHcCCCccccccCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999988887                   7789999999999999999998754 34443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-39  Score=300.61  Aligned_cols=264  Identities=17%  Similarity=0.128  Sum_probs=222.8

Q ss_pred             CCCCccccccccCCCcc--cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE--EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVK   79 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~   79 (396)
                      ||.+++++|+..+++..  .+..|.||||+|+..|+.++|+.||+. |++++.+ +..+.+|++.++..+...++..+++
T Consensus        36 g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  113 (337)
T 4g8k_A           36 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFILAAIAGSVKLLKLFLS  113 (337)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhh-ccCCCchhHHHHhcccchhhHHhhh
Confidence            67888999998887654  445699999999999999999999975 9999988 9999999999999999999999999


Q ss_pred             HhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc-------cCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q 037504           80 KMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV-------PQDDKDRMLPIVGAASLGHTEVVEFLYR  152 (396)
Q Consensus        80 ~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~-------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~  152 (396)
                      .+  .++  +.+|..|.||||+|+..|+.+++++|+++|++++..       ...+..|.||||+|+..|+.+++++|++
T Consensus       114 ~~--~~~--~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~  189 (337)
T 4g8k_A          114 KG--ADV--NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  189 (337)
T ss_dssp             TT--CCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cc--chh--hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHh
Confidence            87  666  999999999999999999999999999999986532       1234579999999999999999999997


Q ss_pred             h-cc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhC
Q 037504          153 E-TK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKY  230 (396)
Q Consensus       153 ~-~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~  230 (396)
                      . ++ .+..+..|             .|+++.++..+..                       .....+++.|     ...
T Consensus       190 ~~gad~n~~d~~g-------------~t~l~~~~~~~~~-----------------------~~~~~i~~lL-----l~~  228 (337)
T 4g8k_A          190 EMGADVNACDNMG-------------RNALIHALLSSDD-----------------------SDVEAITHLL-----LDH  228 (337)
T ss_dssp             HSCCCTTCCCTTS-------------CCHHHHHHHHSCT-----------------------TTHHHHHHHH-----HHT
T ss_pred             ccCCCcCccCCCC-------------CcHHHHHHHHcCc-----------------------ccHHHHHHHH-----HHC
Confidence            5 55 55566666             7888877765521                       0112333333     457


Q ss_pred             CcccccccCCCCcHHHHHHHcCcHHHHHHHHhh-ccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHH
Q 037504          231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI-SSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELL  309 (396)
Q Consensus       231 ~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~  309 (396)
                      +.+++.+|..|+||||+|+..|+.+++++|++. |++    +|.+|.+|+||||+|++.|+.+++++|            
T Consensus       229 gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~----vn~~d~~G~TpL~~A~~~g~~~iv~~L------------  292 (337)
T 4g8k_A          229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELL------------  292 (337)
T ss_dssp             TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHH------------
T ss_pred             CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc----ccCcCCCCCCHHHHHHHcCCHHHHHHH------------
Confidence            889999999999999999999999999999985 788    899999999999999999999998887            


Q ss_pred             HHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          310 WFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       310 ~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                             +..|++++.     .|||++|.+.
T Consensus       293 -------l~~GAd~n~-----~~~L~~A~~~  311 (337)
T 4g8k_A          293 -------CKRGASTDC-----GDLVMTARRN  311 (337)
T ss_dssp             -------HTTSCSSTT-----CCHHHHHHHT
T ss_pred             -------HHCCCCCCC-----CCHHHHHHHc
Confidence                   778887764     5699999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.6e-39  Score=284.62  Aligned_cols=218  Identities=22%  Similarity=0.213  Sum_probs=195.7

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCC
Q 037504           49 EIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDD  128 (396)
Q Consensus        49 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d  128 (396)
                      +++.. |..|.||||+|+..|+.+++++|++.|  .++  +..|..|.||||+|+..|+.+++++|+++|++   ++.+|
T Consensus         3 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~   74 (237)
T 3b7b_A            3 NFKME-HQNKRSPLHAAAEAGHVDICHMLVQAG--ANI--DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKD   74 (237)
T ss_dssp             CCCCS-SCCSCCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCC
T ss_pred             Ccccc-cCCCCCHHHHHHHcCcHHHHHHHHHcC--CCc--CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCC
Confidence            44555 899999999999999999999999998  776  89999999999999999999999999999998   55667


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhhcc--cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhcc
Q 037504          129 KDRMLPIVGAASLGHTEVVEFLYRETK--NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG  206 (396)
Q Consensus       129 ~~g~tpLh~A~~~~~~~~v~~Ll~~~~--~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~  206 (396)
                      ..|.||||+|+..|+.+++++|++.+.  .+..+..|             .||||+|+..+                   
T Consensus        75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-------------~t~L~~A~~~~-------------------  122 (237)
T 3b7b_A           75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG-------------WTPMIWATEYK-------------------  122 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS-------------CCHHHHHHHTT-------------------
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC-------------CCHHHHHHHcC-------------------
Confidence            799999999999999999999999985  44455556             89999999988                   


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhh
Q 037504          207 AKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAG  286 (396)
Q Consensus       207 ~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~  286 (396)
                              ..++++++++     .+.+++.+|..|.||||+|+..|+.+++++|+++|++    ++.+|..|.||||+|+
T Consensus       123 --------~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          123 --------HVDLVKLLLS-----KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD----LHAVNIHGDSPLHIAA  185 (237)
T ss_dssp             --------CHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHH
T ss_pred             --------CHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHH
Confidence                    3567776654     5778999999999999999999999999999999999    8899999999999999


Q ss_pred             cCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHhH
Q 037504          287 KLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHE  342 (396)
Q Consensus       287 ~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~~  342 (396)
                      ..++.+++++|                   +..|++++.+|+.|+||+++|....+
T Consensus       186 ~~~~~~~v~~L-------------------l~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          186 RENRYDCVVLF-------------------LSRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             HTTCHHHHHHH-------------------HTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             HhCCHhHHHHH-------------------HHcCCCCCccCCCCCCHHHHHHHHHH
Confidence            99999988887                   77899999999999999999986543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.6e-39  Score=283.91  Aligned_cols=216  Identities=21%  Similarity=0.182  Sum_probs=188.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      |.+|+||||+|+..|+.+++++|++.......+++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~   82 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHGQTA   82 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCH
Confidence            899999999999999999999999843222334499999999999999999999999999999999   55567799999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcc-----cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchh
Q 037504          135 IVGAASLGHTEVVEFLYRETK-----NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKA  209 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~-----~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (396)
                      ||+|+..|+.+++++|++.++     .+..+..|             .||||+|+..+                      
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g-------------~t~L~~A~~~~----------------------  127 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG-------------LTALHVAVNTE----------------------  127 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS-------------CCHHHHHHHHT----------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCC-------------CcHHHHHHHcC----------------------
Confidence            999999999999999999986     22344455             89999999988                      


Q ss_pred             hhhHHHHHHHHHHHHHHHHhCCccccccc-CCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          210 VENERALELVELLWENFLFKYPDLIWKFD-ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       210 ~~~~~~~~~~~~ll~~ll~~~~~~i~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                           ..++++++++     .+.+++..+ ..|.||||+|++.|+.+++++|+++|++    ++.+|..|+||||+|+..
T Consensus       128 -----~~~~~~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          128 -----CQETVQLLLE-----RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             -----CHHHHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHH
T ss_pred             -----CHHHHHHHHH-----cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHc
Confidence                 3677776664     577788888 8899999999999999999999999999    889999999999999999


Q ss_pred             CCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          289 PPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       289 ~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      |+.+++++|                   +..|++++.+|..|+||+++|.+..
T Consensus       194 ~~~~~v~~L-------------------l~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          194 GLLPLVRTL-------------------VRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             TCHHHHHHH-------------------HHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             CCHHHHHHH-------------------HhcCCCCCCcCCCCCCHHHHHHhcC
Confidence            999988887                   6689999999999999999997644

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-38  Score=275.88  Aligned_cols=210  Identities=20%  Similarity=0.218  Sum_probs=185.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccC-CCCCCCcHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQ-DDKDRMLPIV  136 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~d~~g~tpLh  136 (396)
                      |+||||+|+..|+.+++++|++.+  ++. .+.+|..|.||||+|+..|+.+++++|+++|++.+ +.. .|..|.||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~--~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK--PSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC--GGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC--ccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHHH
Confidence            789999999999999999999998  544 35589999999999999999999999999995544 334 6779999999


Q ss_pred             HHHhcCCHHHHHHHHhhc--c-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH
Q 037504          137 GAASLGHTEVVEFLYRET--K-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE  213 (396)
Q Consensus       137 ~A~~~~~~~~v~~Ll~~~--~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      +|+..|+.+++++|++.+  + .+..+..|             .||||+|+..+                          
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g-------------~t~L~~A~~~~--------------------------  118 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPDLNKITNQG-------------VTCLHLAVGKK--------------------------  118 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCCTTCCCTTC-------------CCHHHHHHHTT--------------------------
T ss_pred             HHHHcCCHHHHHHHHhCCCCcccccCCcCC-------------CCHHHHHHHcC--------------------------
Confidence            999999999999999998  4 44455556             89999999988                          


Q ss_pred             HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhc-cccccccccccCCCCchhhhhhcCCCCC
Q 037504          214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEIS-SVADLLFDSKDKDGNNILHLAGKLPPLN  292 (396)
Q Consensus       214 ~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~n~~d~~g~TpLh~A~~~~~~~  292 (396)
                       ..++++++++     .+.+++.+|..|+||||+|+..|+.+++++|++.| ++    ++.+|..|+||||+|+..|+.+
T Consensus       119 -~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~~  188 (228)
T 2dzn_A          119 -WFEVSQFLIE-----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHGD  188 (228)
T ss_dssp             -CHHHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCHH
T ss_pred             -CHhHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCHH
Confidence             3667776654     57889999999999999999999999999999999 88    8899999999999999999988


Q ss_pred             ccccccchhHhHHHHHHHHHHHhhh-cchhhhhhhcCCCCCchhhHHH
Q 037504          293 RLNIVSVAALQLQRELLWFQEVKKV-VPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       293 ~~~~l~~~~~~~~~~l~~~~~v~~l-~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                      ++++|                   + ..|++++.+|.+|+||+++|.+
T Consensus       189 ~v~~L-------------------l~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          189 AAVLL-------------------VEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHH-------------------HHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHH-------------------HHhcCCCCCccCCCCCcHHHHHHH
Confidence            88877                   5 5799999999999999999964

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-37  Score=288.88  Aligned_cols=228  Identities=18%  Similarity=0.158  Sum_probs=196.1

Q ss_pred             CCCcccccccc-CCC-cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            3 HSAPLELHVYS-NPP-VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         3 h~~~~~~~~~~-~~~-~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      +.+.++.++.. +.+ ...+..|.||||+|+..|+.++|++|++. |.+++.+ |..|.||||+|+..|+.+++++|++.
T Consensus        36 ~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~  113 (351)
T 3utm_A           36 NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH  113 (351)
T ss_dssp             CHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence            44445445543 333 33678899999999999999999999986 8999988 99999999999999999999999999


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccc-----------------------------------
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVP-----------------------------------  125 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------------------------  125 (396)
                      |  +++  +.+|..|.||||+|+..|+.+++++|+++|++++..+                                   
T Consensus       114 g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  189 (351)
T 3utm_A          114 G--ACV--NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA  189 (351)
T ss_dssp             T--CCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C--CCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhc
Confidence            8  776  9999999999999999999999999999999865322                                   


Q ss_pred             ----------------CCCCCCCcHHHHHHhc---CCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHh
Q 037504          126 ----------------QDDKDRMLPIVGAASL---GHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLAR  185 (396)
Q Consensus       126 ----------------~~d~~g~tpLh~A~~~---~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~  185 (396)
                                      ..+..|.||||+|+..   +..+++++|++.++ .+..+..|             .||||+|++
T Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g-------------~t~L~~A~~  256 (351)
T 3utm_A          190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF-------------MTPLHVAAE  256 (351)
T ss_dssp             CHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC-------------CCHHHHHHH
T ss_pred             cHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCC-------------CCHHHHHHH
Confidence                            2335678999999998   55789999999988 55566666             899999999


Q ss_pred             cCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcc
Q 037504          186 KNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS  265 (396)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  265 (396)
                      .|                           ..+++++|++     .+.+++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       257 ~g---------------------------~~~~v~~Ll~-----~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          257 RA---------------------------HNDVMEVLHK-----HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             TT---------------------------CHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cC---------------------------CHHHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            98                           3577776654     688899999999999999999999999999999999


Q ss_pred             ccccccccccCCCCchhhhh
Q 037504          266 VADLLFDSKDKDGNNILHLA  285 (396)
Q Consensus       266 ~~~~~~n~~d~~g~TpLh~A  285 (396)
                      +    ++.+|..|+||||+|
T Consensus       305 d----~~~~~~~g~tal~~a  320 (351)
T 3utm_A          305 D----PSIISLQGFTAAQMG  320 (351)
T ss_dssp             C----TTCCCTTSCCHHHHS
T ss_pred             C----CCCcCCCCCChhhhh
Confidence            9    889999999999998

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.2e-38  Score=285.24  Aligned_cols=224  Identities=15%  Similarity=0.118  Sum_probs=194.7

Q ss_pred             ccccccccCCCcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcc
Q 037504            6 PLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN   85 (396)
Q Consensus         6 ~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~   85 (396)
                      +.+++...+ ....+..|.||||+|+..|+.++++.|++. |++++..   +|+||||+|+..|+.+++++|++.|  ++
T Consensus        15 v~~lL~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g--a~   87 (285)
T 3kea_A           15 LKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLFSG--LD   87 (285)
T ss_dssp             HHHHHHSTT-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTT--CC
T ss_pred             HHHHHHhCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCC--CC
Confidence            344555443 456788999999999999999999999986 8888876   4999999999999999999999998  77


Q ss_pred             cchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCC-CcHHHHHHhcCCHHHHHHHHhhcccCCCCcchh
Q 037504           86 LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDR-MLPIVGAASLGHTEVVEFLYRETKNSLKDDDCI  164 (396)
Q Consensus        86 ~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g-~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~  164 (396)
                      +  +.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..| .||||+|+..|+.+++++|++.++.......| 
T Consensus        88 ~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g-  161 (285)
T 3kea_A           88 D--SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-  161 (285)
T ss_dssp             T--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTH-
T ss_pred             C--CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCC-
Confidence            6  89999999999999999999999999999999   55667788 79999999999999999999999833222255 


Q ss_pred             HHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcH
Q 037504          165 ELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTI  244 (396)
Q Consensus       165 ~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~  244 (396)
                                  .||||+|+..|                           ..+++++|++.     +.+++.+|..|+||
T Consensus       162 ------------~t~L~~A~~~g---------------------------~~~~v~~Ll~~-----gad~n~~~~~g~t~  197 (285)
T 3kea_A          162 ------------LSCIHITIKNG---------------------------HVDMMILLLDY-----MTSTNTNNSLLFIP  197 (285)
T ss_dssp             ------------HHHHHHHHHTT---------------------------CHHHHHHHHHH-----HHHTCTTCCCBCCT
T ss_pred             ------------ccHHHHHHHcC---------------------------hHHHHHHHHHc-----CCCCCcccCCCCCh
Confidence                        89999999998                           36777777754     66789999999998


Q ss_pred             -HHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          245 -FHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       245 -Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                       ||+|+..|+.+++++|+++|++    ++.+|       +.|+..|+.+++++|
T Consensus       198 ~L~~A~~~~~~~~v~~Ll~~gad----~~~~~-------~~a~~~~~~~iv~~L  240 (285)
T 3kea_A          198 DIKLAIDNKDIEMLQALFKYDIN----IYSAN-------LENVLLDDAEIAKMI  240 (285)
T ss_dssp             THHHHHHHTCHHHHHHHTTSCBC----STTTT-------GGGGTTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC----CCCCC-------hhhhhcCCHHHHHHH
Confidence             9999999999999999999999    77777       467888898888887

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.5e-38  Score=274.14  Aligned_cols=223  Identities=22%  Similarity=0.259  Sum_probs=195.7

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchh-cccCCCC
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLA-KRNRIGC   96 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~-~~d~~g~   96 (396)
                      ..+..|.|+||.|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+.+++++|++.+  .++  + ..+..|.
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~--~~~~~~~~~   77 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKG--AIV--DQLGGDLNS   77 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCBTTTTB
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHcC--Ccc--hhhcCCcCC
Confidence            3577899999999999999999999986 8899888 899999999999999999999999998  655  4 3445699


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccc
Q 037504           97 TALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDS  175 (396)
Q Consensus        97 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~  175 (396)
                      ||||+|+..|+.+++++|++.|++   ++..|..|.||||+|+..|+.+++++|++.++ ....+..|            
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g------------  142 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG------------  142 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS------------
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC------------
Confidence            999999999999999999999999   55567789999999999999999999999988 55566666            


Q ss_pred             hhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC-CCCcHHHHHHHcCcH
Q 037504          176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE-NGHTIFHIAVSNRMR  254 (396)
Q Consensus       176 ~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~-~g~t~Lh~A~~~~~~  254 (396)
                       .||||+|+..+..                          .++++.+     ...+.+++..+. .|+||||+|+..|+.
T Consensus       143 -~t~l~~a~~~~~~--------------------------~~~~~~L-----~~~~~~~~~~~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          143 -MTPLMWAAYRTHS--------------------------VDPTRLL-----LTFNVSVNLGDKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             -CCHHHHHHHHCCS--------------------------STTHHHH-----HHTTCCTTCCCTTTCCCHHHHHHHHTCH
T ss_pred             -CcHHHHHHHhCCh--------------------------HHHHHHH-----HhcCCCcchhhccCCCcHHHHHHHcCCH
Confidence             8999999976632                          2333333     456778888886 999999999999999


Q ss_pred             HHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          255 EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       255 ~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      +++++|+++|++    ++.+|..|+||||+|++.|+.+++++|
T Consensus       191 ~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~v~~L  229 (240)
T 3eu9_A          191 TVISLLLEAGAN----VDAQNIKGESALDLAKQRKNVWMINHL  229 (240)
T ss_dssp             HHHHHHHHHTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            999999999999    889999999999999999999988887

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.4e-38  Score=273.88  Aligned_cols=217  Identities=21%  Similarity=0.192  Sum_probs=192.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..+.||||.|+..|+.+++++|++.+  ... ++.+|..|.||||+|+..|+.+++++|+++|++   ++.+|..|.||
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~--~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~   76 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILAD--KSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSP   76 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHC--GGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhc--hhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC---CCCcCCCCCCH
Confidence            456899999999999999999999986  332 488899999999999999999999999999998   55667799999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH
Q 037504          135 IVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE  213 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      ||+|+..|+.+++++|++.++ .+..+..|             .||||+|+..+                          
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-------------~t~L~~A~~~~--------------------------  117 (231)
T 3aji_A           77 LHIAASAGXDEIVKALLVKGAHVNAVNQNG-------------CTPLHYAASKN--------------------------  117 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-------------CCHHHHHHHTT--------------------------
T ss_pred             HHHHHHcCHHHHHHHHHHcCCCCCCCCCCC-------------CCHHHHHHHcC--------------------------
Confidence            999999999999999999988 55566666             89999999988                          


Q ss_pred             HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCc
Q 037504          214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNR  293 (396)
Q Consensus       214 ~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  293 (396)
                       ..++++++++     .+.+++.+|..|.||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..++.++
T Consensus       118 -~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~  187 (231)
T 3aji_A          118 -RHEIAVMLLE-----GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEE  187 (231)
T ss_dssp             -CHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             -CHHHHHHHHH-----cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCCCHHH
Confidence             3567766654     5778899999999999999999999999999999999    88999999999999999999988


Q ss_pred             cccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHhHHHH
Q 037504          294 LNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELK  345 (396)
Q Consensus       294 ~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~~~~~  345 (396)
                      +++|                   +..|++++.+|..|+||+++|.+.....+
T Consensus       188 v~~L-------------------l~~ga~~~~~~~~g~t~l~~A~~~~~~~i  220 (231)
T 3aji_A          188 AKFL-------------------VTQGASIYIENKEEKTPLQVAKGGLGLIL  220 (231)
T ss_dssp             HHHH-------------------HHTTCCSCCCCTTSCCHHHHSCHHHHHHH
T ss_pred             HHHH-------------------HHCCCCCCCCCCCCCCHHHHHHhhHHHHH
Confidence            8887                   66899999999999999999987655433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=287.25  Aligned_cols=216  Identities=16%  Similarity=0.178  Sum_probs=163.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhc----ccchhcccCCCCcHHHHHHHcCCH-HHHHHHHhcCCCCccccCCCC
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAE----NLDLAKRNRIGCTALFYAAASGSV-ELVKATMEGNEDITMVPQDDK  129 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~----~~d~~~~d~~g~tpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~d~  129 (396)
                      |..+.+||+.||..|+.++|++||+.+...    ...++..|..|.||||+|+..++. .++++|++.|++   ++.+|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---vn~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---VNVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC---TTCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC---CCCcCC
Confidence            778899999999999999999999887211    011367788999999999988776 588999999999   566678


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccch
Q 037504          130 DRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAK  208 (396)
Q Consensus       130 ~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~  208 (396)
                      +|+||||+|+..|+.+++++|++.++ ....+.+|             .||+|+|+..+                     
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g-------------~t~l~~a~~~~---------------------  130 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ-------------AVPLHLACQQG---------------------  130 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTC-------------CCHHHHHHHHT---------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCC-------------CCccccccccC---------------------
Confidence            99999999999999999999999998 55566666             89999999888                     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          209 AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       209 ~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                            ..++++.++     ..+.+++.+|..|+||||+|++.|+.+++++|+++|++    +|.+|..|+||||+|+..
T Consensus       131 ------~~~~~~~Ll-----~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t~Lh~A~~~  195 (269)
T 4b93_B          131 ------HFQVVKCLL-----DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIE  195 (269)
T ss_dssp             ------CHHHHHHHH-----HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCBHHHHHHHT
T ss_pred             ------hHHHHHHHH-----HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCcHHHHHHHc
Confidence                  356666555     45788999999999999999999999999999999999    899999999999999999


Q ss_pred             CCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          289 PPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       289 ~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      |+.+++++|                   +..|++++.+|++|+|||++|.+..
T Consensus       196 g~~~~v~~L-------------------l~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          196 KHVFVVELL-------------------LLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TCHHHHHHH-------------------HHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCHHHHHHH-------------------HHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            999988887                   7789999999999999999997643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-37  Score=270.27  Aligned_cols=145  Identities=19%  Similarity=0.214  Sum_probs=128.2

Q ss_pred             CCCCccccccccCCCcc--cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE--EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVK   79 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~   79 (396)
                      ||.+++++++..+++..  .+..|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            67889999998877654  478899999999999999999999986 8899888 8999999999999999999999999


Q ss_pred             Hhhhc-ccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           80 KMKAE-NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        80 ~~~~~-~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      .+  + ++  +.++..|.||||+|+..|+.+++++|+++|++   ++..|..|.||||+|+..|+.+++++|++.++
T Consensus        80 ~~--~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (223)
T 2f8y_A           80 NR--ATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA  149 (223)
T ss_dssp             BT--TSCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cC--CCCc--ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            87  4 44  88999999999999999999999999999999   55567789999999999999999999998776

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.4e-39  Score=279.74  Aligned_cols=216  Identities=15%  Similarity=0.087  Sum_probs=158.1

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCc---cccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCC
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHK---DEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIG   95 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g   95 (396)
                      .+..|.||||+|+..|+.++++.|++...   .+++.. +..|.||||+|+..|+.+++++|++.|  +++  +.+|..|
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g   78 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAG--CDP--ELRDFRG   78 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCC--CCS--CCCCTTC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CCcCCCC
Confidence            46667777777777777777777766422   256666 677777777777777777777777766  555  6777777


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCC---ccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhh
Q 037504           96 CTALFYAAASGSVELVKATMEGNEDI---TMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIE  172 (396)
Q Consensus        96 ~tpLh~A~~~g~~~~v~~Ll~~g~~~---~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~  172 (396)
                      .||||+|+..|+.+++++|++.|++.   ..+...|..|.||||+|+..|+.+++++|++.++                 
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------------  141 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA-----------------  141 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC-----------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------------
Confidence            77777777777777777777777542   1134455567777777777777777777776554                 


Q ss_pred             ccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC-CCCcHHHHHHHc
Q 037504          173 TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE-NGHTIFHIAVSN  251 (396)
Q Consensus       173 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~-~g~t~Lh~A~~~  251 (396)
                                                                                  +++.++. .|+||||+|+..
T Consensus       142 ------------------------------------------------------------~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D          142 ------------------------------------------------------------DVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             ------------------------------------------------------------CTTCCCTTTCCCHHHHHHHT
T ss_pred             ------------------------------------------------------------CCCCCCCCCCCCHHHHHHHc
Confidence                                                                        3555665 789999999999


Q ss_pred             CcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhh--hhcCC
Q 037504          252 RMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAE--EKNND  329 (396)
Q Consensus       252 ~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~--~~~~~  329 (396)
                      |+.+++++|+++|++    ++.+|..|+||||+|+..++.+++++|                   +..|++..  .++..
T Consensus       162 ~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~~L-------------------l~~ga~~~~~~~~~~  218 (236)
T 1ikn_D          162 QNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQL-------------------GQLTLENLQMLPESE  218 (236)
T ss_dssp             TCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHH-------------------HTTSCGGGSSCCCCC
T ss_pred             CCHHHHHHHHHcCCC----CCcccCCCCCHHHHHHccCchHHHHHH-------------------HHcchhhhhcCCccc
Confidence            999999999999998    888999999999999999998888877                   66777666  88889


Q ss_pred             CCCchhhHHH
Q 037504          330 GLTPGDLFIK  339 (396)
Q Consensus       330 g~tpl~~a~~  339 (396)
                      |.||.+.+.+
T Consensus       219 ~~~~~~~~~~  228 (236)
T 1ikn_D          219 DEESYDTESE  228 (236)
T ss_dssp             TTTCCCCC--
T ss_pred             hHHHHhhhcc
Confidence            9999887654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.3e-37  Score=290.27  Aligned_cols=244  Identities=16%  Similarity=0.107  Sum_probs=203.2

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||.+++++|+..+.+.. .+..|.||||+|+..|+.++|++|++. +.+++   +..|.||||+|+..|+.++|++|++.
T Consensus        31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~  106 (364)
T 3ljn_A           31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHS---LWHGQKPIHLAVMANKTDLVVALVEG  106 (364)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            67788999998876555 688899999999999999999999987 66443   45799999999999999999999998


Q ss_pred             hhhcccchhc-----------------ccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhc
Q 037504           81 MKAENLDLAK-----------------RNRIGCTALFYAAASG--SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASL  141 (396)
Q Consensus        81 ~~~~~~d~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~  141 (396)
                      +.....+++.                 +|..|.||||+|+..|  +.+++++|+++|++   ++.+|..|.||||+|+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~  183 (364)
T 3ljn_A          107 AKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEF  183 (364)
T ss_dssp             HHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHT
T ss_pred             ccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHc
Confidence            4222222355                 8999999999999999  99999999999999   566677999999999999


Q ss_pred             CCHHHHHHHHhhccc------CCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          142 GHTEVVEFLYRETKN------SLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       142 ~~~~~v~~Ll~~~~~------~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      |+.+++++|++.++.      +..+..|             .||||+|+..|                           .
T Consensus       184 g~~~~v~~Ll~~g~~~~~~~~~~~~~~g-------------~t~L~~A~~~g---------------------------~  223 (364)
T 3ljn_A          184 RNREALDLMMDTVPSKSSLRLDYANKQG-------------NSHLHWAILIN---------------------------W  223 (364)
T ss_dssp             TCHHHHHHHHHHCSCSSSCCTTCCCTTC-------------CCTTHHHHTTT---------------------------C
T ss_pred             CCHHHHHHHHhcccccccccccccCCCC-------------CcHHHHHHHcC---------------------------C
Confidence            999999999999872      2344455             89999999998                           3


Q ss_pred             HHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcccccc--------ccccccCCCCchhhhhhc
Q 037504          216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADL--------LFDSKDKDGNNILHLAGK  287 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~--------~~n~~d~~g~TpLh~A~~  287 (396)
                      .++++.|+     ..+.+++.+|..|+||||+|+..|+.+++++|+++|++...        .....+..|+|||++|+.
T Consensus       224 ~~~v~~Ll-----~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~  298 (364)
T 3ljn_A          224 EDVAMRFV-----EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA  298 (364)
T ss_dssp             HHHHHHHH-----TTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC
T ss_pred             HHHHHHHH-----HcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhh
Confidence            67777665     46888999999999999999999999999999999987421        011257789999999999


Q ss_pred             CCCCCccccc
Q 037504          288 LPPLNRLNIV  297 (396)
Q Consensus       288 ~~~~~~~~~l  297 (396)
                      .++.+.+..|
T Consensus       299 ~~~~~~v~~l  308 (364)
T 3ljn_A          299 DPSKQEVLQL  308 (364)
T ss_dssp             CHHHHHHHHH
T ss_pred             ccCHHHHHHH
Confidence            9875544433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.3e-37  Score=276.92  Aligned_cols=230  Identities=20%  Similarity=0.182  Sum_probs=172.6

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccc-hhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCC
Q 037504           51 GDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLD-LAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDK  129 (396)
Q Consensus        51 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  129 (396)
                      +.+ |..|+||||+|+..|+.++|++|++.+  ++.+ ++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.
T Consensus         3 ~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~   76 (282)
T 1oy3_D            3 GYV-TEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAER   76 (282)
T ss_dssp             CCC-CTTCCCHHHHHHHTTCHHHHHHHHHHH--TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCT
T ss_pred             Ccc-CCCCCcHHHHHHHcCCHHHHHHHHhcC--CCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCC
Confidence            344 899999999999999999999999998  5521 489999999999999999999999999999999   556677


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhhcccCCCC-cchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccch
Q 037504          130 DRMLPIVGAASLGHTEVVEFLYRETKNSLKD-DDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAK  208 (396)
Q Consensus       130 ~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~-~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~  208 (396)
                      .|+||||+|+..|+.+++++|++.++..... .................++++.++..+..                   
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  137 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE-------------------  137 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc-------------------
Confidence            9999999999999999999999988722111 11100000011112224555555443310                   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccC-CCCchhhhhhc
Q 037504          209 AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK-DGNNILHLAGK  287 (396)
Q Consensus       209 ~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~-~g~TpLh~A~~  287 (396)
                                  ......+...+..++.+|..|+||||+|+..|+.+++++|+++|++    ++.++. .|+||||+|+.
T Consensus       138 ------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~~g~tpL~~A~~  201 (282)
T 1oy3_D          138 ------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD----LNKPEPTCGRTPLHLAVE  201 (282)
T ss_dssp             ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHH
T ss_pred             ------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCcCHHHHHHH
Confidence                        0111122334566888999999999999999999999999999999    888885 49999999999


Q ss_pred             CCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          288 LPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       288 ~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                      .|+.+++++|                   +..|++++.+|..|+|||++|...
T Consensus       202 ~~~~~~v~~L-------------------l~~gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          202 AQAASVLELL-------------------LKAGADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             TTCHHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred             cCCHHHHHHH-------------------HHcCCCCcccccCCCCHHHHHHHc
Confidence            9999988887                   668999999999999999999864

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=9.6e-36  Score=259.81  Aligned_cols=201  Identities=20%  Similarity=0.199  Sum_probs=172.0

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhccc---chhcccCCCCcH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL---DLAKRNRIGCTA   98 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~---d~~~~d~~g~tp   98 (396)
                      .|.||||+|+..|+.++++.|++..+.+++.+ |..|+||||+|+..|+.+++++|++.+  +++   +.+.+|..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAA--PELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHC--GGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--chhccccccccCCCCcCH
Confidence            48899999999999999999999879999998 999999999999999999999999998  443   125677899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccC----------CCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHH
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQ----------DDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELL  167 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l  167 (396)
                      ||+|+..|+.+++++|+++|++++..+.          .|..|.||||+|+..|+.+++++|++.|+ .+..+..|    
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g----  154 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG----  154 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS----
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC----
Confidence            9999999999999999999999653221          13479999999999999999999999998 56677777    


Q ss_pred             HHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCccc------ccccCCC
Q 037504          168 VKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLI------WKFDENG  241 (396)
Q Consensus       168 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i------~~~d~~g  241 (396)
                               .||||+|+..+                           ..+++..+++.++. .+.+.      +.+|..|
T Consensus       155 ---------~t~L~~A~~~~---------------------------~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g  197 (232)
T 2rfa_A          155 ---------NTVLHILILQP---------------------------NKTFACQMYNLLLS-YDGGDHLKSLELVPNNQG  197 (232)
T ss_dssp             ---------CCHHHHHHTCS---------------------------CHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTS
T ss_pred             ---------CCHHHHHHHcC---------------------------ChHHHHHHHHHHHh-cCCchhhhhhhccCCCCC
Confidence                     89999999998                           24555444444433 44444      6889999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhhccc
Q 037504          242 HTIFHIAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       242 ~t~Lh~A~~~~~~~~v~~Ll~~g~~  266 (396)
                      +||||+|++.|+.+++++|+++|..
T Consensus       198 ~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          198 LTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2e-37  Score=284.45  Aligned_cols=253  Identities=13%  Similarity=0.065  Sum_probs=190.0

Q ss_pred             CCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccc----------------cCCCCchHHHHH
Q 037504            3 HSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDV----------------ITRLGDTALHVA   65 (396)
Q Consensus         3 h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~----------------~~~~g~t~Lh~A   65 (396)
                      +.+.+++++..+.++. .+..|.|+++     |+.++|+.||++ |.+.+..                ......+.+|+|
T Consensus        31 ~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a  104 (327)
T 1sw6_A           31 THDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS  104 (327)
T ss_dssp             CTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------------------------C
T ss_pred             cCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchhHHH
Confidence            3467888888887766 5778999987     999999999987 6654431                011223345888


Q ss_pred             HHcCCHHHHHHHHHHhhhcccchhc-ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCC-
Q 037504           66 AAANRIDFVKKLVKKMKAENLDLAK-RNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH-  143 (396)
Q Consensus        66 ~~~g~~~~v~~Ll~~~~~~~~d~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~-  143 (396)
                      +..+..+++++|++.|  .++  +. +|..|+||||+|+..|+.++|++|+++|++   ++.+|..|+||||+|+..|+ 
T Consensus       105 ~~~~~~~~~~~l~~~g--~dv--n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          105 FDSLLQEVNDAFPNTQ--LNL--NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             HHHHHHHHHHHCTTSC--CCS--CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSSHH
T ss_pred             HHhhHHHHHHHHHhcC--CCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhccc
Confidence            8888889999999887  666  88 899999999999999999999999999999   55677899999999999998 


Q ss_pred             --HHHHHHHHhhcc--cCCCCcchhHHHHHHhhccchhhHHHHHHh----cCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          144 --TEVVEFLYRETK--NSLKDDDCIELLVKLIETDSYETALHVLAR----KNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       144 --~~~v~~Ll~~~~--~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                        .++++.|++.+.  .+..+..|             +||||+|+.    .+                           .
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g-------------~tpLh~A~~~~~~~g---------------------------~  217 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMN-------------RTILHHIIITSGMTG---------------------------C  217 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTC-------------CCHHHHHHHHHTSTT---------------------------C
T ss_pred             ccHHHHHHHHHhhhccccCCCCCC-------------CCHHHHHHHHccccc---------------------------c
Confidence              788888888874  44566666             899999998    55                           3


Q ss_pred             HHHHHHHHHHHH---------------HhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCc
Q 037504          216 LELVELLWENFL---------------FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNN  280 (396)
Q Consensus       216 ~~~~~~ll~~ll---------------~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~T  280 (396)
                      .++++.+++...               ...+.+++.+|..|+||||+|+.      +++|+++  +    +|.+|..|+|
T Consensus       218 ~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~----~n~~d~~G~T  285 (327)
T 1sw6_A          218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M----LNAQDSNGDT  285 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T----TTCCCTTSCC
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C----CCCCCCCCCC
Confidence            556666555421               12277889999999999999986      8999988  4    7789999999


Q ss_pred             hhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHH
Q 037504          281 ILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       281 pLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~  339 (396)
                      |||+|+..|+.+++++|                   +..|++++.+|..|+||||+|++
T Consensus       286 pLh~A~~~g~~~~v~~L-------------------l~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          286 CLNIAARLGNISIVDAL-------------------LDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHHHHHCCHHHHHHH-------------------HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHHHHHHcCCHHHHHHH-------------------HHcCCCCcccCCCCCCHHHHHHh
Confidence            99999999999988887                   77899999999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.9e-36  Score=254.08  Aligned_cols=127  Identities=22%  Similarity=0.353  Sum_probs=114.4

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      ..+.||||.|+..|+.+.++.|+...+.+++.. |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~l~   77 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRG--ADI--NLQNSISDSPYL   77 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTSCCHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CCCCCCCCCHHH
Confidence            457899999999999999999999877788888 899999999999999999999999998  776  889999999999


Q ss_pred             HHHHcCCHHHHHHHHh-cCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          101 YAAASGSVELVKATME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +|+..|+.+++++|++ .+++   ++..|..|.||||+|+..|+.+++++|++.+.
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPD---LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCC---TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHhccCcc---cccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999995 4556   55667789999999999999999999998873

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.1e-36  Score=272.34  Aligned_cols=217  Identities=14%  Similarity=0.049  Sum_probs=183.1

Q ss_pred             HHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHH
Q 037504           31 ALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVEL  110 (396)
Q Consensus        31 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~  110 (396)
                      +...+.+.+..+|.+.  +++.+ |..|.||||+|+..|+.++|++|++.|  +++  +.+  +|+||||+|+..|+.++
T Consensus         7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~--~g~t~L~~A~~~g~~~~   77 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLNAG--ALK--NLL--ENEFPLHQAATLEDTKI   77 (285)
T ss_dssp             GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--GGG--SCC--TTCCHHHHHTTSSSCHH
T ss_pred             HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCC--CCC--CCC--CCCCHHHHHHHcCCHHH
Confidence            4456677777788764  57777 999999999999999999999999998  666  666  49999999999999999


Q ss_pred             HHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCC
Q 037504          111 VKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLT  189 (396)
Q Consensus       111 v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~  189 (396)
                      +++|+++|++   ++.+|..|+||||+|+..|+.+++++|++.++ .+..+..|+            .||||+|+..+  
T Consensus        78 v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~------------~t~L~~A~~~~--  140 (285)
T 3kea_A           78 VKILLFSGLD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW------------KTSFYHAVMLN--  140 (285)
T ss_dssp             HHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGG------------GSHHHHHHHTT--
T ss_pred             HHHHHHCCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC------------CCHHHHHHHcC--
Confidence            9999999999   55667799999999999999999999999998 444554441            59999999988  


Q ss_pred             CCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC-CCCcHHHHHHHcCcHHHHHHHHhhccccc
Q 037504          190 SSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE-NGHTIFHIAVSNRMREIFKFIFEISSVAD  268 (396)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~  268 (396)
                                               ..++++++++.     +...  .+. .|+||||+|+..|+.+++++|+++|++  
T Consensus       141 -------------------------~~~~v~~Ll~~-----g~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad--  186 (285)
T 3kea_A          141 -------------------------DVSIVSYFLSE-----IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS--  186 (285)
T ss_dssp             -------------------------CHHHHHHHHTT-----SCTT--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             -------------------------CHHHHHHHHhC-----CCcc--ccccCCccHHHHHHHcChHHHHHHHHHcCCC--
Confidence                                     36777766643     3332  333 899999999999999999999999999  


Q ss_pred             cccccccCCCCch-hhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcC
Q 037504          269 LLFDSKDKDGNNI-LHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNN  328 (396)
Q Consensus       269 ~~~n~~d~~g~Tp-Lh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~  328 (396)
                        ++.+|..|+|| ||+|+..++.+++++|                   +..|++++.+|.
T Consensus       187 --~n~~~~~g~t~~L~~A~~~~~~~~v~~L-------------------l~~gad~~~~~~  226 (285)
T 3kea_A          187 --TNTNNSLLFIPDIKLAIDNKDIEMLQAL-------------------FKYDINIYSANL  226 (285)
T ss_dssp             --TCTTCCCBCCTTHHHHHHHTCHHHHHHH-------------------TTSCBCSTTTTG
T ss_pred             --CCcccCCCCChHHHHHHHcCCHHHHHHH-------------------HHcCCCCCCCCh
Confidence              89999999998 9999999999998887                   556777776664

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-36  Score=263.93  Aligned_cols=208  Identities=19%  Similarity=0.155  Sum_probs=182.2

Q ss_pred             CCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHH
Q 037504           34 GDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKA  113 (396)
Q Consensus        34 g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~  113 (396)
                      |+.+++++|++. +.+++...|..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||+|+..|+.+++++
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~   76 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS--ADA--NIQDNMGRTPLHAAVSADAQGVFQI   76 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCC--CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            567788888875 77887766899999999999999999999999998  776  8999999999999999999999999


Q ss_pred             HHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCC
Q 037504          114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSN  192 (396)
Q Consensus       114 Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~  192 (396)
                      |+++++..  ++..+..|.||||+|+..|+.+++++|++.++ .+..+..|             .||||+|+..+     
T Consensus        77 Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-------------~t~L~~A~~~~-----  136 (223)
T 2f8y_A           77 LIRNRATD--LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG-------------KSALHWAAAVN-----  136 (223)
T ss_dssp             HHHBTTSC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS-------------CBHHHHHHHTT-----
T ss_pred             HHHcCCCC--cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCC-------------CcHHHHHHHcC-----
Confidence            99998732  55667799999999999999999999999988 45566666             89999999988     


Q ss_pred             CCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccc
Q 037504          193 QNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD  272 (396)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n  272 (396)
                                            ..++++++++     .+.+++.+|..|+||||+|++.|+.+++++|+++|++    ++
T Consensus       137 ----------------------~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~  185 (223)
T 2f8y_A          137 ----------------------NVDAAVVLLK-----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN----RD  185 (223)
T ss_dssp             ----------------------CHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TT
T ss_pred             ----------------------CHHHHHHHHH-----cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----Cc
Confidence                                  3667776654     4788999999999999999999999999999999999    88


Q ss_pred             cccCCCCchhhhhhcCCCCCccccc
Q 037504          273 SKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       273 ~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      .+|..|.||||+|+..++.+++++|
T Consensus       186 ~~~~~g~t~l~~A~~~~~~~i~~~L  210 (223)
T 2f8y_A          186 ITDHMDRLPRDIAQERMHHDIVRLL  210 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccCCCHHHHHHHhcchHHHHHH
Confidence            8999999999999999998888776

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.5e-36  Score=271.69  Aligned_cols=222  Identities=18%  Similarity=0.185  Sum_probs=156.1

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHh---Ccccccc---ccCCCCchHHHHHHHc---CCHHHHHHHHHHhhhcc--
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDE---HKDEIGD---VITRLGDTALHVAAAA---NRIDFVKKLVKKMKAEN--   85 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~---~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~--   85 (396)
                      ...+..|.||||+|+..|+.++|+.|++.   .+.+++.   ..+..|+||||+|+..   |+.++|++|++.|...+  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            35688899999999999999999999973   4554442   3378999999999987   99999999999982210  


Q ss_pred             ---c--chhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCC--------------CCCcHHHHHHhcCCHHH
Q 037504           86 ---L--DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDK--------------DRMLPIVGAASLGHTEV  146 (396)
Q Consensus        86 ---~--d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~--------------~g~tpLh~A~~~~~~~~  146 (396)
                         +  ....+|..|.||||+|+..|+.+++++|+++|++++   ..+.              .|.||||+|+..|+.++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~---~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ---AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC---ccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence               2  112367789999999999999999999999999954   3443              68999999999999999


Q ss_pred             HHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHH
Q 037504          147 VEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENF  226 (396)
Q Consensus       147 v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  226 (396)
                      +++|++.+.                                                                       
T Consensus       164 v~~Ll~~~~-----------------------------------------------------------------------  172 (273)
T 2pnn_A          164 VKFLLQNSW-----------------------------------------------------------------------  172 (273)
T ss_dssp             HHHHHHCSS-----------------------------------------------------------------------
T ss_pred             HHHHHhccc-----------------------------------------------------------------------
Confidence            999987210                                                                       


Q ss_pred             HHhCCcccccccCCCCcHHHHHHHcCc---------HHHHHHHHhhcccccc---ccccccCCCCchhhhhhcCCCCCcc
Q 037504          227 LFKYPDLIWKFDENGHTIFHIAVSNRM---------REIFKFIFEISSVADL---LFDSKDKDGNNILHLAGKLPPLNRL  294 (396)
Q Consensus       227 l~~~~~~i~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~~~~~---~~n~~d~~g~TpLh~A~~~~~~~~~  294 (396)
                         .+.+++.+|.+|+||||+|+..|+         .+++++|+++|++.+.   +++.+|..|+||||+|+..|+.+++
T Consensus       173 ---~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          173 ---QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             ---CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ---CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHH
Confidence               123455667777777777777776         6778888888877210   0024778888888888888887777


Q ss_pred             ccccchhHhHHHHHHHHHHHhhhcchh-hhhhhcCCCCCch
Q 037504          295 NIVSVAALQLQRELLWFQEVKKVVPRK-FAEEKNNDGLTPG  334 (396)
Q Consensus       295 ~~l~~~~~~~~~~l~~~~~v~~l~~~~-~~~~~~~~g~tpl  334 (396)
                      ++|                   +..|+ |+......+.+|-
T Consensus       250 ~~L-------------------l~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          250 AYI-------------------LQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHH-------------------HHHHTC-------------
T ss_pred             HHH-------------------HHCCCCCchhhhhhhhhcc
Confidence            776                   55666 6666666666554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2e-36  Score=268.28  Aligned_cols=191  Identities=20%  Similarity=0.231  Sum_probs=150.4

Q ss_pred             ccchHHHHHHHcCCHHHH----HHHHHhCcccccc----ccCCCCchHHHHHHHc---CCHHHHHHHHHHhhhcccc---
Q 037504           22 TRRLKLYRVALNGDWARA----KVIYDEHKDEIGD----VITRLGDTALHVAAAA---NRIDFVKKLVKKMKAENLD---   87 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v----~~ll~~~~~~~~~----~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~d---   87 (396)
                      .|.||||.|+..|+.+.|    +.|++ .+.+++.    . |..|+||||+|+..   |+.+++++|++.|  ++++   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~   76 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPK   76 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccccchh
Confidence            488999999999999855    44444 4888887    5 89999999999999   9999999999998  4431   


Q ss_pred             --h----hcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCC-------------CCcHHHHHHhcCCHHHHH
Q 037504           88 --L----AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKD-------------RMLPIVGAASLGHTEVVE  148 (396)
Q Consensus        88 --~----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~-------------g~tpLh~A~~~~~~~~v~  148 (396)
                        +    ..+|..|.||||+|+..|+.+++++|+++|++++   .+|..             |.||||+|+..|+.++++
T Consensus        77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~  153 (256)
T 2etb_A           77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH---LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT  153 (256)
T ss_dssp             CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHH
T ss_pred             hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC---cccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence              0    1245789999999999999999999999999954   44444             999999999999999999


Q ss_pred             HHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 037504          149 FLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLF  228 (396)
Q Consensus       149 ~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  228 (396)
                      +|++.+.                                                                         
T Consensus       154 ~Ll~~~~-------------------------------------------------------------------------  160 (256)
T 2etb_A          154 YLLENPH-------------------------------------------------------------------------  160 (256)
T ss_dssp             HHHHCSS-------------------------------------------------------------------------
T ss_pred             HHHhccc-------------------------------------------------------------------------
Confidence            9998210                                                                         


Q ss_pred             hCCcccccccCCCCcHHHHHHH--cCcHH-------HHHHHHhhcccccccc-------ccccCCCCchhhhhhcCCCCC
Q 037504          229 KYPDLIWKFDENGHTIFHIAVS--NRMRE-------IFKFIFEISSVADLLF-------DSKDKDGNNILHLAGKLPPLN  292 (396)
Q Consensus       229 ~~~~~i~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~g~~~~~~~-------n~~d~~g~TpLh~A~~~~~~~  292 (396)
                       .+.+++.+|..|+||||+|+.  .++.+       ++++|+++|++    +       +.+|..|+||||+|+..|+.+
T Consensus       161 -~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~----~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          161 -QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR----LCPTVQLEEISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             -CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH----HSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             -cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC----cccccccccccCCCCCCHHHHHHHhCCHH
Confidence             123455667777777777777  66666       77777777777    5       677777888888888777777


Q ss_pred             ccccc
Q 037504          293 RLNIV  297 (396)
Q Consensus       293 ~~~~l  297 (396)
                      ++++|
T Consensus       236 ~v~~L  240 (256)
T 2etb_A          236 IFRHI  240 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77666

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=260.11  Aligned_cols=218  Identities=17%  Similarity=0.161  Sum_probs=191.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      |..|.||||.|+..|+.+++++|++.|  .++  +.+|..|.||||+|+..|+.+++++|+++|+++....  +..|.||
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~t~   79 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAG--YDV--RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG--GDLNSTP   79 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB--TTTTBCH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcC--CCc--CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc--CCcCCCh
Confidence            788999999999999999999999998  666  8999999999999999999999999999999864333  3369999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH
Q 037504          135 IVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE  213 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      ||+|+..|+.+++++|++.++ .+..+..|             .||||+|+..+                          
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-------------~t~l~~A~~~~--------------------------  120 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLIDGEG-------------CSCIHLAAQFG--------------------------  120 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-------------CCHHHHHHHTT--------------------------
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcccCCCC-------------CCHHHHHHHcC--------------------------
Confidence            999999999999999999988 45555666             89999999988                          


Q ss_pred             HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCc-HHHHHHHHhhccccccccccccC-CCCchhhhhhcCCCC
Q 037504          214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRM-REIFKFIFEISSVADLLFDSKDK-DGNNILHLAGKLPPL  291 (396)
Q Consensus       214 ~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~~n~~d~-~g~TpLh~A~~~~~~  291 (396)
                       ..++++++++     .+.+++.+|..|.||||+|+..++ .+++++|++.|++    ++..+. .|+||||+|+..|+.
T Consensus       121 -~~~~~~~Ll~-----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~----~~~~~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          121 -HTSIVAYLIA-----KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS----VNLGDKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             -CHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC----TTCCCTTTCCCHHHHHHHHTCH
T ss_pred             -HHHHHHHHHh-----cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC----cchhhccCCCcHHHHHHHcCCH
Confidence             3567776654     577899999999999999997776 8999999999999    788887 999999999999999


Q ss_pred             CccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh-HHHHH
Q 037504          292 NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH-EELKK  346 (396)
Q Consensus       292 ~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~-~~~~~  346 (396)
                      +++++|                   +..|++++.+|..|+||+++|.+.. .++++
T Consensus       191 ~~v~~L-------------------l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          191 TVISLL-------------------LEAGANVDAQNIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             HHHHHH-------------------HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHH-------------------HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            988887                   6689999999999999999998753 33433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.5e-34  Score=238.77  Aligned_cols=156  Identities=28%  Similarity=0.350  Sum_probs=142.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      ++|+.||+.|+.++|+.||+. |++++.+ |..|+||||+|+..++.+++++|++.|  +++  +.+|..|+||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~--~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKG--ADV--NAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcc--cch--hhhccCCCCHHHHHHH
Confidence            579999999999999999985 9999998 999999999999999999999999998  776  9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHH
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLA  184 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~  184 (396)
                      .|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|++.|+                             
T Consensus        80 ~g~~~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga-----------------------------  127 (169)
T 4gpm_A           80 NGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-----------------------------  127 (169)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------
T ss_pred             cCCHHHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------------------------
Confidence            9999999999999999   56678899999999999999999999998665                             


Q ss_pred             hcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhc
Q 037504          185 RKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEIS  264 (396)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  264 (396)
                                                                      +++.+|.+|+||||+|+++|+.+++++|+++|
T Consensus       128 ------------------------------------------------d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A          128 ------------------------------------------------DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             ------------------------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ------------------------------------------------CccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                                                            35667889999999999999999999999999


Q ss_pred             cc
Q 037504          265 SV  266 (396)
Q Consensus       265 ~~  266 (396)
                      ++
T Consensus       160 A~  161 (169)
T 4gpm_A          160 GW  161 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            98

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.1e-35  Score=256.54  Aligned_cols=205  Identities=20%  Similarity=0.159  Sum_probs=166.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHH-hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc--cCCCCCCCc
Q 037504           57 LGDTALHVAAAANRIDFVKKLVKK-MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV--PQDDKDRML  133 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~--~~~d~~g~t  133 (396)
                      .|+||||+|+..|+.+++++|++. +  .++  +.+|..|+||||+|+..|+.+++++|+++|+++...  ...|..|.|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g--~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t   77 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEG--CEV--HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT   77 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTC--SCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcC--CCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC
Confidence            589999999999999999999997 5  555  999999999999999999999999999999884221  456778999


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhh
Q 037504          134 PIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN  212 (396)
Q Consensus       134 pLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      |||+|+..|+.+++++|++.++ .+..+.........-.....+.||||+|+..|                         
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-------------------------  132 (232)
T 2rfa_A           78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG-------------------------  132 (232)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT-------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC-------------------------
Confidence            9999999999999999999988 33332210000000000112389999999988                         


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHH----HHHHhhcccccc--ccccccCCCCchhhhhh
Q 037504          213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIF----KFIFEISSVADL--LFDSKDKDGNNILHLAG  286 (396)
Q Consensus       213 ~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v----~~Ll~~g~~~~~--~~n~~d~~g~TpLh~A~  286 (396)
                        ..++++.|++     .+.+++.+|..|+||||+|+..|+.+++    ++|+++|++...  +.+.+|..|+||||+|+
T Consensus       133 --~~~~v~~Ll~-----~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~  205 (232)
T 2rfa_A          133 --SEEIVRLLIE-----HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG  205 (232)
T ss_dssp             --CHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHH
T ss_pred             --CHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHH
Confidence              3677776664     5888999999999999999999999988    999999998321  12689999999999999


Q ss_pred             cCCCCCccccc
Q 037504          287 KLPPLNRLNIV  297 (396)
Q Consensus       287 ~~~~~~~~~~l  297 (396)
                      ..|+.+++++|
T Consensus       206 ~~g~~~~v~~L  216 (232)
T 2rfa_A          206 VEGNIVMFQHL  216 (232)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            99999998887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=3e-35  Score=261.29  Aligned_cols=130  Identities=22%  Similarity=0.212  Sum_probs=107.8

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHH---hCcccccccc---CCCCchHHHHHH---HcCCHHHHHHHHHHhhhc------
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYD---EHKDEIGDVI---TRLGDTALHVAA---AANRIDFVKKLVKKMKAE------   84 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~---~~~~~~~~~~---~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~------   84 (396)
                      +..|+++||.|++.|+.+.++.|++   ..+.+++...   +..|.||||+|+   ..|+.+++++|++.|...      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4578999999999999997776666   3477777551   377999999999   779999999999998221      


Q ss_pred             -ccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCC--------------CCCCcHHHHHHhcCCHHHHHH
Q 037504           85 -NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDD--------------KDRMLPIVGAASLGHTEVVEF  149 (396)
Q Consensus        85 -~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d--------------~~g~tpLh~A~~~~~~~~v~~  149 (396)
                       +.+++..|..|+||||+|+..|+.+++++|+++|++++   ..|              ..|.||||+|+..|+.+++++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH---AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC---ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence             12235566699999999999999999999999999954   444              479999999999999999999


Q ss_pred             HHh
Q 037504          150 LYR  152 (396)
Q Consensus       150 Ll~  152 (396)
                      |++
T Consensus       159 Ll~  161 (260)
T 3jxi_A          159 LTE  161 (260)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            998

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.1e-34  Score=237.83  Aligned_cols=150  Identities=29%  Similarity=0.355  Sum_probs=140.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      ++|+.||+.|+.++|++||+.|  +++  |.+|..|+||||+|+..++.+++++|+++|++   ++.+|..|+||||+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G--adv--n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG--ADV--NASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---hhhhccCCCCHHHHHH
Confidence            5799999999999999999998  777  99999999999999999999999999999999   5667789999999999


Q ss_pred             hcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHH
Q 037504          140 SLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELV  219 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (396)
                      ..|+.+++++|++.|+                                                                
T Consensus        79 ~~g~~~~v~~Ll~~ga----------------------------------------------------------------   94 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGA----------------------------------------------------------------   94 (169)
T ss_dssp             HTTCHHHHHHHHHTTC----------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHCcC----------------------------------------------------------------
Confidence            9999999999997664                                                                


Q ss_pred             HHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          220 ELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       220 ~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                                   ++|.+|.+|+||||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.|+.+++++|
T Consensus        95 -------------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A           95 -------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             -------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                         3667788999999999999999999999999999    889999999999999999999999888

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=9e-35  Score=266.82  Aligned_cols=200  Identities=15%  Similarity=0.092  Sum_probs=161.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      +.+|.|+..+..++++.|++ .|.+++...|..|+||||+|+..|+.++|++|++.|  +++  +.+|..|+||||+|+.
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~-~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G--ad~--n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPN-TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNR--LYGDNMGESCLVKAVK  173 (327)
T ss_dssp             -----CHHHHHHHHHHHCTT-SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TBCCTTCCCHHHHHHH
T ss_pred             chhHHHHHhhHHHHHHHHHh-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCC--CCcCCCCCCHHHHHHH
Confidence            34577777777777777765 599999933999999999999999999999999998  777  9999999999999999


Q ss_pred             cCC---HHHHHHHHhcC-CCCccccCCCCCCCcHHHHHHh----cCCHHHHHHHHhhcc---------------------
Q 037504          105 SGS---VELVKATMEGN-EDITMVPQDDKDRMLPIVGAAS----LGHTEVVEFLYRETK---------------------  155 (396)
Q Consensus       105 ~g~---~~~v~~Ll~~g-~~~~~~~~~d~~g~tpLh~A~~----~~~~~~v~~Ll~~~~---------------------  155 (396)
                      .|+   .++++.|++.+ ++   ++.+|..|+||||+|+.    .|+.+++++|++.+.                     
T Consensus       174 ~g~~~~~~~~~~ll~~~~~~---~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~  250 (327)
T 1sw6_A          174 SVNNYDSGTFEALLDYLYPC---LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK  250 (327)
T ss_dssp             SSHHHHTTCHHHHHHHHGGG---GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred             hcccccHHHHHHHHHhhhcc---ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence            998   78888888876 44   56667899999999999    899999999998843                     


Q ss_pred             cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 037504          156 NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW  235 (396)
Q Consensus       156 ~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~  235 (396)
                      .+..+..|             .||||.|+.                                 ++++++.       +++
T Consensus       251 ~~~~~~~g-------------~t~L~~a~~---------------------------------~~~Ll~~-------~~n  277 (327)
T 1sw6_A          251 PNDKNGER-------------KDSILENLD---------------------------------LKWIIAN-------MLN  277 (327)
T ss_dssp             ----------------------CHHHHHCS---------------------------------HHHHHHH-------TTT
T ss_pred             cccccccC-------------CChhHHHHH---------------------------------HHHHHHh-------CCC
Confidence            22233333             889988763                                 2334432       488


Q ss_pred             cccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCC
Q 037504          236 KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLP  289 (396)
Q Consensus       236 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~  289 (396)
                      .+|..|+||||+|+++|+.++|++|+++|++    ++.+|..|+||||+|++.|
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC----TTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHhcC
Confidence            9999999999999999999999999999999    8999999999999999875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-33  Score=255.69  Aligned_cols=221  Identities=18%  Similarity=0.169  Sum_probs=179.0

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||.+++++++..+++.. .+..|.||||+|+..|+.+++++|++. |++++.. |..|.||||+|+..|+.++|++|++.
T Consensus        51 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~  128 (299)
T 1s70_B           51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQP-DNEGWIPLHAAASCGYLDIAEYLISQ  128 (299)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            56778888888776554 678899999999999999999999985 8999988 99999999999999999999999999


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc--cC
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG-NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK--NS  157 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~--~~  157 (396)
                      |  +++  +.+|..|.||||+|+..++.++++.|+.. +.+++   ..+..+.++++        ..+..++..+.  ..
T Consensus       129 g--~~~--~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~~~--------~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          129 G--AHV--GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE---AARKEEERIML--------RDARQWLNSGHINDV  193 (299)
T ss_dssp             T--CCT--TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHH---HHHHHHHHHHH--------HHHHHHHHHTCCCCC
T ss_pred             C--CCC--CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCch---hhhhhhhhHHH--------HHHHHHHhccCcchh
Confidence            8  776  89999999999999999999999988864 44422   11112223332        23444555554  22


Q ss_pred             CCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccc
Q 037504          158 LKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF  237 (396)
Q Consensus       158 ~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~  237 (396)
                      ..+..|             .||||+|+..|                           ..++++.|+     ..+.+++.+
T Consensus       194 ~~~~~g-------------~t~L~~A~~~g---------------------------~~~~v~~Ll-----~~g~d~~~~  228 (299)
T 1s70_B          194 RHAKSG-------------GTALHVAAAKG---------------------------YTEVLKLLI-----QARYDVNIK  228 (299)
T ss_dssp             CCTTTC-------------CCHHHHHHHHT---------------------------CHHHHHHHH-----TTTCCTTCC
T ss_pred             hhcCCC-------------CCHHHHHHHCC---------------------------cHHHHHHHH-----HcCCCCCCc
Confidence            233444             78999998888                           356666555     357889999


Q ss_pred             cCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       238 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                      |..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..
T Consensus       229 d~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          229 DYDGWTPLHAAAHWGKEEACRILVENLCD----MEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTTTSCCSG
T ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999    889999999999999753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.5e-33  Score=248.33  Aligned_cols=193  Identities=16%  Similarity=0.112  Sum_probs=158.7

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHHHhhhcccchhc----ccCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCcccc
Q 037504           57 LGDTALHVAAAANRID----FVKKLVKKMKAENLDLAK----RNRIGCTALFYAAAS---GSVELVKATMEGNEDITMVP  125 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~d~~~----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~  125 (396)
                      .|+||||+|+..|+.+    ++++|++.+  .++  +.    +|..|+||||+|+..   |+.+++++|++.|++++.+.
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i--~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   76 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS--KYL--TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK   76 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCT--TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh
Confidence            4899999999999997    556666677  666  87    899999999999999   99999999999998754322


Q ss_pred             --------CCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCc
Q 037504          126 --------QDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPR  196 (396)
Q Consensus       126 --------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  196 (396)
                              .+|..|.||||+|+..|+.+++++|++.++ .+..+..+             .+                  
T Consensus        77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-------------~~------------------  125 (256)
T 2etb_A           77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR-------------FF------------------  125 (256)
T ss_dssp             CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG-------------GG------------------
T ss_pred             hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccc-------------cc------------------
Confidence                    345689999999999999999999999987 33333322             00                  


Q ss_pred             chhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh---hcccccccccc
Q 037504          197 GIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE---ISSVADLLFDS  273 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~~n~  273 (396)
                                                        +...+..|..|+||||+|+..|+.+++++|++   +|++    +|.
T Consensus       126 ----------------------------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~----~n~  167 (256)
T 2etb_A          126 ----------------------------------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS----LEA  167 (256)
T ss_dssp             ----------------------------------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTC
T ss_pred             ----------------------------------cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----cCc
Confidence                                              11223445679999999999999999999999   9999    899


Q ss_pred             ccCCCCchhhhhhc--CCCCC-------ccccccchhHhHHHHHHHHHHHhhhcchhhh-------hhhcCCCCCchhhH
Q 037504          274 KDKDGNNILHLAGK--LPPLN-------RLNIVSVAALQLQRELLWFQEVKKVVPRKFA-------EEKNNDGLTPGDLF  337 (396)
Q Consensus       274 ~d~~g~TpLh~A~~--~~~~~-------~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~-------~~~~~~g~tpl~~a  337 (396)
                      +|..|+||||+|+.  .++.+       ++++|                   +..|+++       +.+|..|+|||++|
T Consensus       168 ~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~L-------------------l~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGL-------------------LQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH-------------------HHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHH-------------------HHcCCCcccccccccccCCCCCCHHHHH
Confidence            99999999999998  66655       55554                   5578999       99999999999999


Q ss_pred             HHHh
Q 037504          338 IKEH  341 (396)
Q Consensus       338 ~~~~  341 (396)
                      .+..
T Consensus       229 ~~~g  232 (256)
T 2etb_A          229 AKEG  232 (256)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            8753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.3e-32  Score=227.10  Aligned_cols=170  Identities=19%  Similarity=0.138  Sum_probs=147.9

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      +.||||.|+..|+.+.+++|++..+..++.. +..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A   76 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWG--ADP--HILAKERESALSLA   76 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT--CCT--TCCCTTCCCHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCc--hhhcccCCCHHHHH
Confidence            4689999999999999999999866667777 899999999999999999999999998  776  99999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHH
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHV  182 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~  182 (396)
                      +..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++                           
T Consensus        77 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---------------------------  126 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLARGA---------------------------  126 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---------------------------
T ss_pred             HHCCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------------
Confidence            999999999999999999   56667799999999999999999999997664                           


Q ss_pred             HHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh
Q 037504          183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE  262 (396)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  262 (396)
                                                                        +++.+|..|+||||+|+..|+.+++++|++
T Consensus       127 --------------------------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A          127 --------------------------------------------------DLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             --------------------------------------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------------------------------------------CccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence                                                              355678889999999999999999999999


Q ss_pred             hccccccccccccCCCCch
Q 037504          263 ISSVADLLFDSKDKDGNNI  281 (396)
Q Consensus       263 ~g~~~~~~~n~~d~~g~Tp  281 (396)
                      +|++    +..++..|.||
T Consensus       157 ~~~~----~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILK----LFQSNLVPADP  171 (172)
T ss_dssp             HHHH----HSCC-------
T ss_pred             HHHH----HhcccCCCCCC
Confidence            9998    77888888887

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.6e-33  Score=235.55  Aligned_cols=189  Identities=22%  Similarity=0.226  Sum_probs=164.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..+.||||.|+..|+.+.++.|++.+  . .+++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~--~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~   75 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDT--T-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSP   75 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCT--T-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcC--C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCH
Confidence            467899999999999999999999986  3 23499999999999999999999999999999999   55567799999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcc--cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhh
Q 037504          135 IVGAASLGHTEVVEFLYRETK--NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN  212 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~--~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      ||+|+..|+.+++++|++.+.  .+..+..|             .||||+|+..+                         
T Consensus        76 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-------------~t~L~~A~~~~-------------------------  117 (201)
T 3hra_A           76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYG-------------GNALIPAAEKG-------------------------  117 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS-------------CCSHHHHHHTT-------------------------
T ss_pred             HHHHHHcCCHHHHHHHHhccCcccccccCCC-------------CcHHHHHHHcC-------------------------
Confidence            999999999999999996655  44455555             89999999988                         


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCc-----HHHHHHHHhhccccccccccccCCCCchhhhhhc
Q 037504          213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRM-----REIFKFIFEISSVADLLFDSKDKDGNNILHLAGK  287 (396)
Q Consensus       213 ~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~  287 (396)
                        ..++++++++    ..+.+++.+|..|+||||+|+..++     .+++++|+++|++    ++.+|..|+||||+|+.
T Consensus       118 --~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~  187 (201)
T 3hra_A          118 --HIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYANQ  187 (201)
T ss_dssp             --CHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHH
T ss_pred             --CHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHHHH
Confidence              3567766664    3457889999999999999999887     8999999999999    88999999999999999


Q ss_pred             CCCCCccccc
Q 037504          288 LPPLNRLNIV  297 (396)
Q Consensus       288 ~~~~~~~~~l  297 (396)
                      .|+.+++++|
T Consensus       188 ~~~~~~~~~L  197 (201)
T 3hra_A          188 KGYTEISKIL  197 (201)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHhHHHHH
Confidence            9998887776

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.1e-33  Score=242.33  Aligned_cols=205  Identities=13%  Similarity=0.074  Sum_probs=172.3

Q ss_pred             CCCCccccccccCC-----CcccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHH
Q 037504            2 AHSAPLELHVYSNP-----PVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKK   76 (396)
Q Consensus         2 ~h~~~~~~~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~   76 (396)
                      |+.++++.++....     ....+..|.||||+|+..|+.++++.|++. |++++.+ +..|.||||+|+..|+.+++++
T Consensus        19 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~   96 (236)
T 1ikn_D           19 EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELR-DFRGNTPLHLACEQGCLASVGV   96 (236)
T ss_dssp             TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCC-CTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHH
Confidence            67788888887654     234677899999999999999999999975 8999988 9999999999999999999999


Q ss_pred             HHHHhhhc--ccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCC-CCCcHHHHHHhcCCHHHHHHHHhh
Q 037504           77 LVKKMKAE--NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDK-DRMLPIVGAASLGHTEVVEFLYRE  153 (396)
Q Consensus        77 Ll~~~~~~--~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~  153 (396)
                      |++.+...  ...++..|..|.||||+|+..|+.+++++|+++|++   ++.++. .|.||||+|+..|+.+++++|+++
T Consensus        97 Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  173 (236)
T 1ikn_D           97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC  173 (236)
T ss_dssp             HHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99988221  112378899999999999999999999999999999   555565 899999999999999999999976


Q ss_pred             cccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcc
Q 037504          154 TKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDL  233 (396)
Q Consensus       154 ~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~  233 (396)
                      |+                                                                             +
T Consensus       174 ga-----------------------------------------------------------------------------~  176 (236)
T 1ikn_D          174 GA-----------------------------------------------------------------------------D  176 (236)
T ss_dssp             TC-----------------------------------------------------------------------------C
T ss_pred             CC-----------------------------------------------------------------------------C
Confidence            65                                                                             3


Q ss_pred             cccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCC
Q 037504          234 IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPP  290 (396)
Q Consensus       234 i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~  290 (396)
                      ++.+|..|+||||+|+.+|+.+++++|+++|++..  ....+.+|.||.+.+.....
T Consensus       177 ~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTTCCCCC-----
T ss_pred             CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHHHHhhhccccc
Confidence            56678889999999999999999999999999853  45789999999998876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=7.4e-33  Score=247.92  Aligned_cols=187  Identities=18%  Similarity=0.232  Sum_probs=142.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCCCcHH
Q 037504           57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE-DITMVPQDDKDRMLPI  135 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~d~~g~tpL  135 (396)
                      ...+++|.|+..|+.+.++.+++.+  .+..+|.+|..|+||||+|+..|+.+++++|++.|+ +   ++..|..|.|||
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~--~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~g~tpL  149 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARL--LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK---VDKQNRAGYSPI  149 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHH--HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC---TTCCCTTSCCHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHH--HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc---CCCCCCCCCCHH
Confidence            3556777777777777777777776  443347777777777777777777777777777776 5   445566777777


Q ss_pred             HHHH-----hcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchh
Q 037504          136 VGAA-----SLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKA  209 (396)
Q Consensus       136 h~A~-----~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (396)
                      |+|+     ..++.+++++|++.+. ....+..|             .||||+|+..|                      
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g-------------~tpLh~A~~~g----------------------  194 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNINAKASQAG-------------QTALMLAVSHG----------------------  194 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC-------------CCHHHHHHHTT----------------------
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC-------------CCHHHHHHHcC----------------------
Confidence            7777     5567777777777776 33344445             67777777777                      


Q ss_pred             hhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh-hccccccccccccCCCCchhhhhhcC
Q 037504          210 VENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE-ISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       210 ~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                           ..++++.|++     .+.+++.+|.+|+||||+|+..|+.+++++|++ .|++    ++.+|..|+||||+|+..
T Consensus       195 -----~~~~v~~Ll~-----~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          195 -----RVDVVKALLA-----CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             -----CHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHHH
T ss_pred             -----CHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHHc
Confidence                 2555555543     467788889999999999999999999999999 8998    888999999999999999


Q ss_pred             CCCCccccc
Q 037504          289 PPLNRLNIV  297 (396)
Q Consensus       289 ~~~~~~~~l  297 (396)
                      |+.+++++|
T Consensus       261 g~~~iv~~L  269 (276)
T 4hbd_A          261 GQSEIASML  269 (276)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            998888776

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.4e-33  Score=245.37  Aligned_cols=188  Identities=14%  Similarity=0.074  Sum_probs=144.7

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      .+..|.||||+|+..|+.++|+.|++. |.+++.+ |..|+||||+|+..|+.+++++|++.|  +++  +.+|..|+||
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~g--a~~--n~~d~~g~tp   90 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITAG--ANV--NSPDSHGWTP   90 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCCH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC--CCCCCCCCCH
Confidence            456677888888888888888888875 7778777 788888888888888888888888877  665  7888888888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCC-CCCCcHHHHH--HhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccc
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDD-KDRMLPIVGA--ASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDS  175 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~tpLh~A--~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~  175 (396)
                      ||+|+..|+.+++++|+++|++++   ..+ ..|+||||+|  +..|+.+++++|++.|+                    
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~---~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga--------------------  147 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIF---ATTLSDGATAFEKCDPYREGYADCATYLADVEQ--------------------  147 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTT---CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcc---cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC--------------------
Confidence            888888888888888888888843   333 3788888888  78888888888887766                    


Q ss_pred             hhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHH
Q 037504          176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMRE  255 (396)
Q Consensus       176 ~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~  255 (396)
                                                                               +++..|..|.||+|.++..+.  
T Consensus       148 ---------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~--  168 (229)
T 2vge_A          148 ---------------------------------------------------------SMGLMNSGAVYALWDYSAEFG--  168 (229)
T ss_dssp             ---------------------------------------------------------HTTTSGGGEEEESSCBCCSST--
T ss_pred             ---------------------------------------------------------CcccccCCchHHHHHHhhccc--
Confidence                                                                     233344455566654433332  


Q ss_pred             HHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          256 IFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       256 ~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                       .++|++.|++.+  ++.+|..|+||||+|+..|+.++++..
T Consensus       169 -~~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          169 -DELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             -TBCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             -cccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehh
Confidence             257788888865  678999999999999999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.9e-32  Score=225.08  Aligned_cols=170  Identities=22%  Similarity=0.206  Sum_probs=146.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG  137 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~  137 (396)
                      +.||||.|+..|+.+++++|++.+  .. +++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~--~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKG--DN-LVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTC--SG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcC--cc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHH
Confidence            568999999999999999999987  44 1488999999999999999999999999999999   55667789999999


Q ss_pred             HHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHH
Q 037504          138 AASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALE  217 (396)
Q Consensus       138 A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (396)
                      |+..|+.+++++|++.++                                                              
T Consensus        76 A~~~~~~~~v~~Ll~~g~--------------------------------------------------------------   93 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDV--------------------------------------------------------------   93 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTC--------------------------------------------------------------
T ss_pred             HHHCCCHHHHHHHHHcCC--------------------------------------------------------------
Confidence            999999999999997654                                                              


Q ss_pred             HHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          218 LVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       218 ~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                                     +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..++.+++++|
T Consensus        94 ---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (172)
T 3v30_A           94 ---------------DINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALGYRKVQQVI  154 (172)
T ss_dssp             ---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ---------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence                           3556788899999999999999999999999999    889999999999999999999988887


Q ss_pred             cchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCc
Q 037504          298 SVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP  333 (396)
Q Consensus       298 ~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tp  333 (396)
                                         +.+++++..++..|.||
T Consensus       155 -------------------~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          155 -------------------ENHILKLFQSNLVPADP  171 (172)
T ss_dssp             -------------------HHHHHHHSCC-------
T ss_pred             -------------------HHHHHHHhcccCCCCCC
Confidence                               66788889999999888

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.1e-31  Score=227.02  Aligned_cols=160  Identities=19%  Similarity=0.229  Sum_probs=127.6

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCC
Q 037504           49 EIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDD  128 (396)
Q Consensus        49 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d  128 (396)
                      .++.+ |..|+||||+|+..|+.+++++|++.+  .++  +.+|..|.||||+|+..|+.+++++|+++|++   ++.+|
T Consensus        27 ~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~   98 (192)
T 2rfm_A           27 LRNYR-DSYNRTPLMVACMLGMENAIDKLVENF--DKL--EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKD   98 (192)
T ss_dssp             HHTCC-CTTCCCHHHHHHHHTCGGGHHHHHHHH--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCC
T ss_pred             HHhCc-CCCCCCHHHHHHHcCCHHHHHHHHHhc--ccc--ccccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCCCC
Confidence            34555 888899999999999999999998887  666  88888889999999999999999999988888   55566


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccch
Q 037504          129 KDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAK  208 (396)
Q Consensus       129 ~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~  208 (396)
                      ..|.||||+|+..|+.+++++|++.++                                                     
T Consensus        99 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------------------------------------------------  125 (192)
T 2rfm_A           99 FSGKTPLMWSIIFGYSEMSYFLLEHGA-----------------------------------------------------  125 (192)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTC-----------------------------------------------------
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCC-----------------------------------------------------
Confidence            788899999988888888888887654                                                     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          209 AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       209 ~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                                              +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|.||||+|+..
T Consensus       126 ------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          126 ------------------------NVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTAEASARIF  177 (192)
T ss_dssp             ------------------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHT
T ss_pred             ------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHh
Confidence                                    2445566777788888877777888888877777    677777788888888777


Q ss_pred             CCCCccccc
Q 037504          289 PPLNRLNIV  297 (396)
Q Consensus       289 ~~~~~~~~l  297 (396)
                      |+.+++++|
T Consensus       178 ~~~~~v~~L  186 (192)
T 2rfm_A          178 GRQEVIKIF  186 (192)
T ss_dssp             TCHHHHHHH
T ss_pred             CcHHHHHHH
Confidence            777766665

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.7e-31  Score=218.24  Aligned_cols=159  Identities=23%  Similarity=0.300  Sum_probs=142.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY  101 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~  101 (396)
                      ...||||.|+..|+.++++.|++. +.+++.. +..|.||||+|+. |+.+++++|++.|  .++  +.+|..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRG--ANP--DLKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTT--CCT--TCCCTTSCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcC--CCC--CCCCCCCCCHHHH
Confidence            457999999999999999999974 8899888 8999999999999 9999999999998  776  8999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHH
Q 037504          102 AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      |+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++.                         
T Consensus        77 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------  128 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-------------------------  128 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-------------------------
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC-------------------------
Confidence            9999999999999999998   566677999999999999999999999987751                         


Q ss_pred             HHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHH
Q 037504          182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIF  261 (396)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  261 (396)
                                                                         .++.+|..|.||||+|+..|+.+++++|+
T Consensus       129 ---------------------------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A          129 ---------------------------------------------------NVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             ---------------------------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------------------------CCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence                                                               14566788999999999999999999999


Q ss_pred             hhccc
Q 037504          262 EISSV  266 (396)
Q Consensus       262 ~~g~~  266 (396)
                      ++|+|
T Consensus       158 ~~GAd  162 (162)
T 1ihb_A          158 ANGAG  162 (162)
T ss_dssp             HTC--
T ss_pred             HhCCC
Confidence            99985

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=4.2e-31  Score=223.49  Aligned_cols=160  Identities=23%  Similarity=0.227  Sum_probs=147.4

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      .+..|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~  104 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKG--SNV--NTKDFSGKTP  104 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT--CCT--TCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHCC--CCC--CCCCCCCCcH
Confidence            578899999999999999999999986 8888888 899999999999999999999999998  776  9999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYET  178 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t  178 (396)
                      ||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++                       
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-----------------------  158 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLELGA-----------------------  158 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----------------------
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----------------------
Confidence            9999999999999999999999   56667799999999999999999999997664                       


Q ss_pred             HHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHH
Q 037504          179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFK  258 (396)
Q Consensus       179 ~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~  258 (396)
                                                                            +++.+|..|.||||+|+..|+.++++
T Consensus       159 ------------------------------------------------------~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          159 ------------------------------------------------------DISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             ------------------------------------------------------CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             ------------------------------------------------------CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence                                                                  35567888999999999999999999


Q ss_pred             HHHhhc
Q 037504          259 FIFEIS  264 (396)
Q Consensus       259 ~Ll~~g  264 (396)
                      +|+++|
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=9.4e-31  Score=216.20  Aligned_cols=159  Identities=20%  Similarity=0.173  Sum_probs=140.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY  101 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~  101 (396)
                      .|.||||.|+..|+.+++++|++. +.+++.. |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNG--ADP--QLLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcC--CCC--CCcCCCCCcHHHH
Confidence            478999999999999999999987 7888887 889999999999999999999999987  666  8889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHH
Q 037504          102 AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      |+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++                          
T Consensus        76 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------------------------  126 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA--------------------------  126 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------------------
Confidence            9999999999999999998   55667789999999999999999999987654                          


Q ss_pred             HHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHH
Q 037504          182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIF  261 (396)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  261 (396)
                                                                         +++.+|..|.||||+|+..|+.+++++|+
T Consensus       127 ---------------------------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A          127 ---------------------------------------------------DPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             ---------------------------------------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ---------------------------------------------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence                                                               34556788999999999999999999999


Q ss_pred             hhccc
Q 037504          262 EISSV  266 (396)
Q Consensus       262 ~~g~~  266 (396)
                      +++.+
T Consensus       156 ~~~~~  160 (167)
T 3v31_A          156 SHLLK  160 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.4e-30  Score=215.65  Aligned_cols=161  Identities=24%  Similarity=0.340  Sum_probs=138.1

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      .....+.++|++|++.|+.++|++|++. +.+++.. |..|.||||+|+..|+.+++++|++.|  .++  +.+|..|.|
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t   82 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG--ADV--NAVDHAGMT   82 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCC
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CccCCCCCC
Confidence            3566678999999999999999999985 8888887 889999999999999999999999987  666  889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchh
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE  177 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~  177 (396)
                      |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++++                      
T Consensus        83 ~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----------------------  137 (169)
T 2y1l_E           83 PLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA----------------------  137 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----------------------
Confidence            99999999999999999999998   55667789999999999999999999987654                      


Q ss_pred             hHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHH
Q 037504          178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIF  257 (396)
Q Consensus       178 t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v  257 (396)
                                                                             +++.+|..|.||||+|+..|+.+++
T Consensus       138 -------------------------------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E          138 -------------------------------------------------------DVNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             -------------------------------------------------------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -------------------------------------------------------CCCCcCCCCCCHHHHHHHhCCHHHH
Confidence                                                                   2456678899999999999999999


Q ss_pred             HHHHhhc
Q 037504          258 KFIFEIS  264 (396)
Q Consensus       258 ~~Ll~~g  264 (396)
                      ++|++.|
T Consensus       163 ~~L~~~G  169 (169)
T 2y1l_E          163 EILQKLN  169 (169)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHcC
Confidence            9998875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=8e-31  Score=234.44  Aligned_cols=199  Identities=18%  Similarity=0.202  Sum_probs=152.8

Q ss_pred             CCCCccccccc----cCCCc-----ccccccchHHHHHHHc---CCHHHHHHHHHhCccc-------ccc----ccCCCC
Q 037504            2 AHSAPLELHVY----SNPPV-----EEIRTRRLKLYRVALN---GDWARAKVIYDEHKDE-------IGD----VITRLG   58 (396)
Q Consensus         2 ~h~~~~~~~~~----~~~~~-----~~~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~-------~~~----~~~~~g   58 (396)
                      |+.++++.++.    .+..+     ..+..|.||||+|+..   |+.++++.|++. +++       ++.    . |..|
T Consensus        24 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~-d~~g  101 (273)
T 2pnn_A           24 SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDS-YYKG  101 (273)
T ss_dssp             TCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCST-TTTT
T ss_pred             CCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccc-cCCC
Confidence            67788887775    23322     3478899999999987   999999999986 544       232    3 6789


Q ss_pred             chHHHHHHHcCCHHHHHHHHHHhhhcccchhcccC--------------CCCcHHHHHHHcCCHHHHHHHHh---cCCCC
Q 037504           59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNR--------------IGCTALFYAAASGSVELVKATME---GNEDI  121 (396)
Q Consensus        59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~--------------~g~tpLh~A~~~g~~~~v~~Ll~---~g~~~  121 (396)
                      .||||+|+..|+.++|++|++.|  +++  +.++.              .|.||||+|+..|+.+++++|++   +|++ 
T Consensus       102 ~tpL~~A~~~g~~~~v~~Ll~~g--a~~--~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-  176 (273)
T 2pnn_A          102 QTALHIAIERRNMTLVTLLVENG--ADV--QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-  176 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC--CCc--CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-
Confidence            99999999999999999999998  776  88876              79999999999999999999999   8999 


Q ss_pred             ccccCCCCCCCcHHHHHHhcCC---------HHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCC
Q 037504          122 TMVPQDDKDRMLPIVGAASLGH---------TEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSN  192 (396)
Q Consensus       122 ~~~~~~d~~g~tpLh~A~~~~~---------~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~  192 (396)
                        ++.+|..|+||||+|+..|+         .+++++|++.|+ ++.                                 
T Consensus       177 --~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~n---------------------------------  220 (273)
T 2pnn_A          177 --ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA-KLH---------------------------------  220 (273)
T ss_dssp             --TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHC---------------------------------
T ss_pred             --ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh-hcc---------------------------------
Confidence              56678899999999999887         677777777665 000                                 


Q ss_pred             CCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcc-cccccc
Q 037504          193 QNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS-VADLLF  271 (396)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~~~~~~  271 (396)
                                                          .....++.+|..|+||||+|+..|+.+++++|+++|+ |    .
T Consensus       221 ------------------------------------~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d----p  260 (273)
T 2pnn_A          221 ------------------------------------PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE----P  260 (273)
T ss_dssp             ------------------------------------TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred             ------------------------------------cccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC----c
Confidence                                                0011235678999999999999999999999999999 5    4


Q ss_pred             ccccCCCCchhh
Q 037504          272 DSKDKDGNNILH  283 (396)
Q Consensus       272 n~~d~~g~TpLh  283 (396)
                      ......+.+|-|
T Consensus       261 ~~~~~~~~~~~~  272 (273)
T 2pnn_A          261 ECRHAAAHHHHH  272 (273)
T ss_dssp             ------------
T ss_pred             hhhhhhhhhccC
Confidence            556666666543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.9e-32  Score=235.04  Aligned_cols=191  Identities=15%  Similarity=0.101  Sum_probs=156.4

Q ss_pred             HHHHHHhCccccccc--cCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHh
Q 037504           39 AKVIYDEHKDEIGDV--ITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME  116 (396)
Q Consensus        39 v~~ll~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  116 (396)
                      ++.||++ +.+++..  .+..|.||||+|+..|+.++|++|++.|  +++  +.+|..|+||||+|+..|+.+++++|++
T Consensus         1 v~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM--NDP--SQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             Ceehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC--CCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3556665 5554432  2567889999999999999999999998  766  9999999999999999999999999999


Q ss_pred             cCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCc
Q 037504          117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPR  196 (396)
Q Consensus       117 ~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  196 (396)
                      +|++   ++.+|..|+||||+|+..|+.+++++|++.++                                         
T Consensus        76 ~ga~---~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-----------------------------------------  111 (229)
T 2vge_A           76 AGAN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGA-----------------------------------------  111 (229)
T ss_dssp             TTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-----------------------------------------
T ss_pred             CCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------------------------------------
Confidence            9999   56667799999999999999999999998765                                         


Q ss_pred             chhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCccccccc-CCCCcHHHHH--HHcCcHHHHHHHHhhcccccccccc
Q 037504          197 GIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD-ENGHTIFHIA--VSNRMREIFKFIFEISSVADLLFDS  273 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d-~~g~t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~n~  273 (396)
                                                          +++.++ ..|+||||+|  +..|+.+++++|+++|++    ++.
T Consensus       112 ------------------------------------~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~----~~~  151 (229)
T 2vge_A          112 ------------------------------------AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS----MGL  151 (229)
T ss_dssp             ------------------------------------CTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH----TTT
T ss_pred             ------------------------------------CcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC----ccc
Confidence                                                234444 5899999999  999999999999999999    889


Q ss_pred             ccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhh--hhhhcCCCCCchhhHHHH
Q 037504          274 KDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKF--AEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       274 ~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~--~~~~~~~g~tpl~~a~~~  340 (396)
                      +|..|.||||.++.....+   +|                   +..|++  ++.+|..|+|||++|...
T Consensus       152 ~~~~~~~~l~~~~~~~~~~---~l-------------------l~~ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          152 MNSGAVYALWDYSAEFGDE---LS-------------------FREGESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             SGGGEEEESSCBCCSSTTB---CC-------------------BCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred             ccCCchHHHHHHhhccccc---cC-------------------ccccccccccccCCCcccHHHHHHHc
Confidence            9999999999777665433   33                   556766  778999999999999754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=8.8e-31  Score=218.97  Aligned_cols=169  Identities=16%  Similarity=0.167  Sum_probs=149.7

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      ..+.++||.|+..|+.++|+.|++..+.+++.. +..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~   77 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMRG--ARI--NVMNRGDDTPLH   77 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHcC--CCC--CCcCCCCCCHHH
Confidence            357899999999999999999999888888888 999999999999999999999999998  776  899999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHH
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETAL  180 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L  180 (396)
                      +|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++                         
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------------------------  129 (179)
T 3f6q_A           78 LAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANGA-------------------------  129 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------------------------
Confidence            99999999999999999999   56667799999999999999999999997665                         


Q ss_pred             HHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHH
Q 037504          181 HVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFI  260 (396)
Q Consensus       181 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~L  260 (396)
                                                                          +++.+|..|.||||+|+..++.+++++|
T Consensus       130 ----------------------------------------------------~~~~~~~~g~tpl~~A~~~~~~~~~~~L  157 (179)
T 3f6q_A          130 ----------------------------------------------------LVSICNKYGEMPVDKAKAPLRELLRERA  157 (179)
T ss_dssp             ----------------------------------------------------CSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred             ----------------------------------------------------CcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence                                                                3556788899999999999999999999


Q ss_pred             HhhccccccccccccCCC
Q 037504          261 FEISSVADLLFDSKDKDG  278 (396)
Q Consensus       261 l~~g~~~~~~~n~~d~~g  278 (396)
                      +++|++    ++..+..+
T Consensus       158 ~~~g~~----~~~~~~~~  171 (179)
T 3f6q_A          158 EKMGQN----LNRIPYKD  171 (179)
T ss_dssp             HHTTCC----CSCBCCCC
T ss_pred             HHhhcC----cccCCccc
Confidence            999999    66655543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=9.7e-32  Score=238.60  Aligned_cols=196  Identities=16%  Similarity=0.135  Sum_probs=154.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHH----Hhhhcccchhccc----CCCCcHHHHHH---HcCCHHHHHHHHhcCCCCcc
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVK----KMKAENLDLAKRN----RIGCTALFYAA---ASGSVELVKATMEGNEDITM  123 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~d~~~~d----~~g~tpLh~A~---~~g~~~~v~~Ll~~g~~~~~  123 (396)
                      +..|+|+||.|++.|+.+.++.|++    .+  .++  +..+    ..|.||||+|+   +.|+.+++++|++.|++...
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~--~~~--~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~   77 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK--KRL--TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN   77 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCT--TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCc--chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc
Confidence            5789999999999999996555555    66  555  6554    77999999999   77999999999999865221


Q ss_pred             --------ccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCC
Q 037504          124 --------VPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQN  194 (396)
Q Consensus       124 --------~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~  194 (396)
                              +...|..|+||||+|+..|+.+++++|++.++ .+..+..+                               
T Consensus        78 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-------------------------------  126 (260)
T 3jxi_A           78 MREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR-------------------------------  126 (260)
T ss_dssp             HHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEEC-------------------------------
T ss_pred             hHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccc-------------------------------
Confidence                    44456689999999999999999999999987 22222211                               


Q ss_pred             CcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh---hcccccccc
Q 037504          195 PRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE---ISSVADLLF  271 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~~  271 (396)
                                                       ...+.+.+..+..|+||||+|+..|+.+++++|++   +|++    +
T Consensus       127 ---------------------------------~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~----~  169 (260)
T 3jxi_A          127 ---------------------------------FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD----L  169 (260)
T ss_dssp             ---------------------------------CCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----T
T ss_pred             ---------------------------------ccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----C
Confidence                                             00112233445789999999999999999999999   8999    8


Q ss_pred             ccccCCCCchhhhhhcCCCC---------CccccccchhHhHHHHHHHHHHHhhhcchhhh-------hhhcCCCCCchh
Q 037504          272 DSKDKDGNNILHLAGKLPPL---------NRLNIVSVAALQLQRELLWFQEVKKVVPRKFA-------EEKNNDGLTPGD  335 (396)
Q Consensus       272 n~~d~~g~TpLh~A~~~~~~---------~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~-------~~~~~~g~tpl~  335 (396)
                      |.+|..|+||||+|+..++.         +++++|                   +..|+++       +.+|..|+|||+
T Consensus       170 ~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~L-------------------l~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL-------------------LIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHH-------------------HHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHH-------------------HHhCcccccccchhhcccCCCCCHHH
Confidence            99999999999999987762         334333                   4478888       789999999999


Q ss_pred             hHHHHh
Q 037504          336 LFIKEH  341 (396)
Q Consensus       336 ~a~~~~  341 (396)
                      +|.+..
T Consensus       231 ~A~~~g  236 (260)
T 3jxi_A          231 MAAKTG  236 (260)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            998753

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=7.9e-31  Score=216.64  Aligned_cols=153  Identities=22%  Similarity=0.252  Sum_probs=140.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHH
Q 037504           57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIV  136 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh  136 (396)
                      .|.||||.|+..|+.+++++|++.+  .++  +.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE--NVI--NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS--SCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC--CCc--CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCcHHH
Confidence            5899999999999999999999998  666  99999999999999999999999999999999   5556778999999


Q ss_pred             HHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHH
Q 037504          137 GAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERAL  216 (396)
Q Consensus       137 ~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (396)
                      +|+..|+.+++++|++.++                                                             
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~-------------------------------------------------------------   93 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGV-------------------------------------------------------------   93 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred             HHHHcCCHHHHHHHHHCCC-------------------------------------------------------------
Confidence            9999999999999997664                                                             


Q ss_pred             HHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccc
Q 037504          217 ELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI  296 (396)
Q Consensus       217 ~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~  296 (396)
                                      +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|.||||+|+..|+.+++++
T Consensus        94 ----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (167)
T 3v31_A           94 ----------------DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMDLAVALGYRSVQQV  153 (167)
T ss_dssp             ----------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             ----------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence                            3556788899999999999999999999999999    88999999999999999999998887


Q ss_pred             c
Q 037504          297 V  297 (396)
Q Consensus       297 l  297 (396)
                      |
T Consensus       154 L  154 (167)
T 3v31_A          154 I  154 (167)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=8.9e-31  Score=215.89  Aligned_cols=129  Identities=22%  Similarity=0.266  Sum_probs=107.9

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      .+..|.|+||.|+..|+.++++.|++..+.+++.. +..|.||||+|+..|+.+++++|++.|  .++  +.+|..|+||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~   78 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHG--ADV--HAKDKGGLVP   78 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcC--CCC--CccCCCCCCH
Confidence            35667889999999999999999888767777666 788889999999999999999999887  666  8888889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      ||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  132 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA  132 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999888   55566788899999999998888888887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.1e-31  Score=235.22  Aligned_cols=183  Identities=17%  Similarity=0.172  Sum_probs=127.9

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHH
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF  100 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh  100 (396)
                      ..|.||||.|++.|+.+.++.|++. |.+++.  +..|.||||.|+..|+.++|++|++.|  +++  +.+|..|+||||
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~d~~g~t~L~   75 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEV--DDP--SLPNDEGITALH   75 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT--SSC--CCCCTTSCCHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcC--CCC--CCcCCCCCCHHH
Confidence            4689999999999999999999975 888874  478999999999999999999999988  666  999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHH
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETAL  180 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L  180 (396)
                      +|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++++                         
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-------------------------  127 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGA-------------------------  127 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------------------------
Confidence            99999999999999999999   56677799999999999999999999998765                         


Q ss_pred             HHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCC-cHHHHH--HHcCcHHHH
Q 037504          181 HVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH-TIFHIA--VSNRMREIF  257 (396)
Q Consensus       181 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~-t~Lh~A--~~~~~~~~v  257 (396)
                                                                          +++.++..|. ||||+|  +..|+.+++
T Consensus       128 ----------------------------------------------------~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B          128 ----------------------------------------------------AVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             ----------------------------------------------------CTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             ----------------------------------------------------CcceecCCCCcchHHHHHHhhhccHHHH
Confidence                                                                2445555555 999999  788999999


Q ss_pred             HHHHhhccccccc-----cccccCCCCchhhhhhcCCC
Q 037504          258 KFIFEISSVADLL-----FDSKDKDGNNILHLAGKLPP  290 (396)
Q Consensus       258 ~~Ll~~g~~~~~~-----~n~~d~~g~TpLh~A~~~~~  290 (396)
                      ++|+++|++.+..     ....|..+.+|++++.+.|.
T Consensus       156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999999984320     11127789999999999886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=7.5e-30  Score=208.25  Aligned_cols=154  Identities=24%  Similarity=0.295  Sum_probs=138.7

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      +.||||.|+..|+.++++.|++..+.+++.. +..|.||||+ +..|+.+++++|++.|  +++  +.+|..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQG--ASP--NVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCC--CCC--CCcCCCCCCHHHHH
Confidence            5799999999999999999999856688887 8999999999 9999999999999998  776  99999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHH
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHV  182 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~  182 (396)
                      +..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++. +                           
T Consensus        76 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~---------------------------  124 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S---------------------------  124 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S---------------------------
T ss_pred             HHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c---------------------------
Confidence            999999999999999998   566677999999999999999999999865 3                           


Q ss_pred             HHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh
Q 037504          183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE  262 (396)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  262 (396)
                                                                        +++.+|..|.||||+|+..|+.+++++|++
T Consensus       125 --------------------------------------------------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          125 --------------------------------------------------DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             --------------------------------------------------CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             --------------------------------------------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence                                                              245667889999999999999999999987


Q ss_pred             h
Q 037504          263 I  263 (396)
Q Consensus       263 ~  263 (396)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.6e-30  Score=210.41  Aligned_cols=87  Identities=25%  Similarity=0.284  Sum_probs=44.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH
Q 037504           59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA  138 (396)
Q Consensus        59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A  138 (396)
                      .||||.|+..|+.+++++|++.|  .++  + .|..|.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g--~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANG--APF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT--CCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcC--CCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHH
Confidence            34555555555555555555554  332  2 344555555555555555555555555555   333344455555555


Q ss_pred             HhcCCHHHHHHHHhh
Q 037504          139 ASLGHTEVVEFLYRE  153 (396)
Q Consensus       139 ~~~~~~~~v~~Ll~~  153 (396)
                      +..|+.+++++|++.
T Consensus        75 ~~~~~~~~v~~Ll~~   89 (153)
T 1awc_B           75 ASEGHANIVEVLLKH   89 (153)
T ss_dssp             HHHTCHHHHHHHHTT
T ss_pred             HHcChHHHHHHHHHc
Confidence            555555555555543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.8e-30  Score=213.85  Aligned_cols=155  Identities=26%  Similarity=0.295  Sum_probs=140.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      ...+.||||.|+..|+.++|++|++.|  .++  +.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~   83 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANG--ADV--NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTP   83 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCC--CCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCH
Confidence            567899999999999999999999998  776  89999999999999999999999999999998   55667789999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHH
Q 037504          135 IVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENER  214 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ||+|+..|+.+++++|++.++                                                           
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~-----------------------------------------------------------  104 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGA-----------------------------------------------------------  104 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCC-----------------------------------------------------------
Confidence            999999999999999997664                                                           


Q ss_pred             HHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcc
Q 037504          215 ALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRL  294 (396)
Q Consensus       215 ~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  294 (396)
                                        +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|.||||+|+..|+.+++
T Consensus       105 ------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E          105 ------------------DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             ------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHhCCHHHH
Confidence                              3456678899999999999999999999999999    889999999999999999998888


Q ss_pred             ccc
Q 037504          295 NIV  297 (396)
Q Consensus       295 ~~l  297 (396)
                      ++|
T Consensus       163 ~~L  165 (169)
T 2y1l_E          163 EIL  165 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.1e-30  Score=214.66  Aligned_cols=154  Identities=18%  Similarity=0.224  Sum_probs=138.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHH
Q 037504           56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPI  135 (396)
Q Consensus        56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpL  135 (396)
                      ....||||.|+..|+.+++++|++.+  .++  +.+|..|+||||+|+. |+.+++++|+++|++   ++.+|..|.|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~g~t~L   74 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNN--VNV--NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---PDLKDRTGFAVI   74 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSC--CCT--TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCC--CCc--cccCccCccHHHHHHc-CcHHHHHHHHHcCCC---CCCCCCCCCCHH
Confidence            45789999999999999999999987  666  8999999999999999 999999999999998   556677999999


Q ss_pred             HHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          136 VGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       136 h~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      |+|+..|+.+++++|++.++                                                            
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g~------------------------------------------------------------   94 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQA------------------------------------------------------------   94 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC------------------------------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCC------------------------------------------------------------
Confidence            99999999999999997654                                                            


Q ss_pred             HHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccc
Q 037504          216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLN  295 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~  295 (396)
                                       +++.+|..|+||||+|++.|+.+++++|+++|++.   ++.+|..|+||||+|+..|+.++++
T Consensus        95 -----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           95 -----------------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             -----------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             -----------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC---CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence                             35567888999999999999999999999999983   5889999999999999999998888


Q ss_pred             cc
Q 037504          296 IV  297 (396)
Q Consensus       296 ~l  297 (396)
                      +|
T Consensus       155 ~L  156 (162)
T 1ihb_A          155 LM  156 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            77

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=5.5e-31  Score=235.74  Aligned_cols=183  Identities=16%  Similarity=0.115  Sum_probs=156.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc--cCCCCcchhHHHHHHhh
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK--NSLKDDDCIELLVKLIE  172 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~--~~~~~~~g~~~l~~~~~  172 (396)
                      +++++|.|+..|+.+.++.+++.+.+.. ++.+|..|+||||+|+..|+.+++++|++.++  .+..+..|         
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~-~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g---------  145 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYV-VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG---------  145 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHH-HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS---------
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhc-CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC---------
Confidence            4688999999999999999998876532 56678899999999999999999999999997  44566666         


Q ss_pred             ccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcC
Q 037504          173 TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNR  252 (396)
Q Consensus       173 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~  252 (396)
                          .||||+|+.....                      .....++++.+++.     +...+..|..|+||||+|+..|
T Consensus       146 ----~tpL~~a~~~~~~----------------------~~~~~~~v~~Ll~~-----g~~~~~~~~~g~tpLh~A~~~g  194 (276)
T 4hbd_A          146 ----YSPIMLTALATLK----------------------TQDDIETVLQLFRL-----GNINAKASQAGQTALMLAVSHG  194 (276)
T ss_dssp             ----CCHHHHGGGCCCC----------------------SHHHHHHHHHHHHH-----SCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ----CCHHHHHHHHHhh----------------------hhhhHHHHHHHHHc-----CCCccccCCCCCCHHHHHHHcC
Confidence                8999999854311                      22356777766653     5677788899999999999999


Q ss_pred             cHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhc-chhhhhhhcCCCC
Q 037504          253 MREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVV-PRKFAEEKNNDGL  331 (396)
Q Consensus       253 ~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~-~~~~~~~~~~~g~  331 (396)
                      +.+++++|+++|++    +|.+|..|+||||+|+..|+.+++++|                   +. .|++++.+|..|+
T Consensus       195 ~~~~v~~Ll~~gad----~n~~d~~G~TpLh~A~~~g~~~iv~~L-------------------l~~~gad~~~~d~~g~  251 (276)
T 4hbd_A          195 RVDVVKALLACEAD----VNVQDDDGSTALMCACEHGHKEIAGLL-------------------LAVPSCDISLTDRDGS  251 (276)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH-------------------HTSTTCCTTCCCTTSC
T ss_pred             CHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHH-------------------HhcCCCCCcCcCCCCC
Confidence            99999999999999    899999999999999999999888887                   66 7999999999999


Q ss_pred             CchhhHHHHh
Q 037504          332 TPGDLFIKEH  341 (396)
Q Consensus       332 tpl~~a~~~~  341 (396)
                      |||++|.+..
T Consensus       252 TpL~~A~~~g  261 (276)
T 4hbd_A          252 TALMVALDAG  261 (276)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHcC
Confidence            9999998754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-29  Score=204.95  Aligned_cols=123  Identities=24%  Similarity=0.301  Sum_probs=112.9

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      ..++||.|+..|+.+++++|++. +.+++ . +..|.||||+|+..|+.+++++|++.|  .++  +.+|..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A   74 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAG--VSR--DARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTT--CCT--TCCCTTCCCHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-c-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CCCCCCCCCHHHHH
Confidence            46899999999999999999987 66665 3 889999999999999999999999988  666  99999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus        75 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcChHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999   55667799999999999999999999998765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.4e-30  Score=215.38  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=146.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHH
Q 037504           56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPI  135 (396)
Q Consensus        56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpL  135 (396)
                      ..+.++||.|+..|+.+++++|++.+ +.+  ++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNT-END--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCT-TSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcC-ccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCCHH
Confidence            56889999999999999999999984 133  489999999999999999999999999999999   556677999999


Q ss_pred             HHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          136 VGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       136 h~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      |+|+..|+.+++++|++.++                                                            
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~------------------------------------------------------------   96 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKA------------------------------------------------------------   96 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC------------------------------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCC------------------------------------------------------------
Confidence            99999999999999997664                                                            


Q ss_pred             HHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccc
Q 037504          216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLN  295 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~  295 (396)
                                       +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|.||||+|+..++.++++
T Consensus        97 -----------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A           97 -----------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL----VSICNKYGEMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             -----------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred             -----------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cchhccCCCCcHHHHHHHHHHHHHH
Confidence                             3556788899999999999999999999999999    8899999999999999988877776


Q ss_pred             cccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCC
Q 037504          296 IVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDG  330 (396)
Q Consensus       296 ~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g  330 (396)
                      +|                   +..|++++..+.++
T Consensus       156 ~L-------------------~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          156 RA-------------------EKMGQNLNRIPYKD  171 (179)
T ss_dssp             HH-------------------HHTTCCCSCBCCCC
T ss_pred             HH-------------------HHhhcCcccCCccc
Confidence            66                   55778887766554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=5.7e-30  Score=211.03  Aligned_cols=155  Identities=26%  Similarity=0.322  Sum_probs=137.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..|.||||.|+..|+.+++++|++.+   ..+++..+..|.||||+|+..|+.+++++|+++|++   ++.+|..|+||
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~   78 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ---SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVP   78 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT---TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC---CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---CCccCCCCCCH
Confidence            677999999999999999999999864   233478888999999999999999999999999999   56667799999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHH
Q 037504          135 IVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENER  214 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ||+|+..|+.+++++|++.++                                                           
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~-----------------------------------------------------------   99 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGA-----------------------------------------------------------   99 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             HHHHHHcCcHHHHHHHHhCCC-----------------------------------------------------------
Confidence            999999999999999997664                                                           


Q ss_pred             HHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcc
Q 037504          215 ALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRL  294 (396)
Q Consensus       215 ~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  294 (396)
                                        +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+. ++.+++
T Consensus       100 ------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~a~~-~~~~i~  156 (165)
T 3twr_A          100 ------------------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD----PTKKNRDGNTPLDLVKD-GDTDIQ  156 (165)
T ss_dssp             ------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred             ------------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCChhHhHhc-CChHHH
Confidence                              3556778899999999999999999999999999    88999999999999877 777777


Q ss_pred             ccc
Q 037504          295 NIV  297 (396)
Q Consensus       295 ~~l  297 (396)
                      ++|
T Consensus       157 ~~L  159 (165)
T 3twr_A          157 DLL  159 (165)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.3e-31  Score=248.59  Aligned_cols=238  Identities=13%  Similarity=0.081  Sum_probs=159.0

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCcccc---ccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcc---cchhcccC
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEI---GDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN---LDLAKRNR   93 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~d~~~~d~   93 (396)
                      +.++.||||+|++.|+.++|++|++. +...   +.. +..|.||||+|+..|+.++|++|++.|  ++   .+++.++ 
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~-~~~~~tpL~~Aa~~G~~eiv~~Ll~~g--ad~~~~~i~~~~-  163 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELA--PTEIMAMIQAEN-  163 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTTHHHHHSHHH-
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHh-ccCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccccCCCC-
Confidence            44567999999999999999999976 5411   122 556899999999999999999999998  54   2223333 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH-hcCCHHHHHHHHhhcccCCCCcchhHHHHHHhh
Q 037504           94 IGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA-SLGHTEVVEFLYRETKNSLKDDDCIELLVKLIE  172 (396)
Q Consensus        94 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~-~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~  172 (396)
                        .||||+|+..|+.++|++|+++|++++. ...|..|.||||+|+ ..|+.+++++|++.++      .|         
T Consensus       164 --~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~-~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~---------  225 (376)
T 2aja_A          164 --YHAFRLAAENGHLHVLNRLCELAPTEAT-AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------ML---------  225 (376)
T ss_dssp             --HHHHHHHHHTTCHHHHHHHHHSCGGGHH-HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HH---------
T ss_pred             --CCHHHHHHHCCCHHHHHHHHHcCCccch-hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------cc---------
Confidence              8999999999999999999999998432 014557999999999 9999999999998664      13         


Q ss_pred             ccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcC
Q 037504          173 TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNR  252 (396)
Q Consensus       173 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~  252 (396)
                          .||||+|+..|+                           .++++++++..     ..++..+    +++++|+..|
T Consensus       226 ----~taL~~Aa~~g~---------------------------~evv~lL~~~g-----a~~~~~~----~~l~~A~~~g  265 (376)
T 2aja_A          226 ----AYAEIHEFEYGE---------------------------KYVNPFIARHV-----NRLKEMH----DAFKLSNPDG  265 (376)
T ss_dssp             ----HHHHHCTTTTTT---------------------------TTHHHHHHHHH-----HHHHHHH----TTTTTTSSSS
T ss_pred             ----chHHHHHHHCCC---------------------------HHHHHHHHhcC-----ccccccc----HHHHHHHHCC
Confidence                899999999983                           34555555432     2222211    1222333222


Q ss_pred             ---------------------------cHHHHHHHHhhccccccc-cccccCCCCchhhhhhcCCCCCccccccchhHhH
Q 037504          253 ---------------------------MREIFKFIFEISSVADLL-FDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQL  304 (396)
Q Consensus       253 ---------------------------~~~~v~~Ll~~g~~~~~~-~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~  304 (396)
                                                 ..+.+++|++.+...... .......++||||+|+..|+.+++++|       
T Consensus       266 ~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL-------  338 (376)
T 2aja_A          266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL-------  338 (376)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH-------
T ss_pred             ChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH-------
Confidence                                       244556666543211100 112334678999999999999999887       


Q ss_pred             HHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHhH
Q 037504          305 QRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHE  342 (396)
Q Consensus       305 ~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~~  342 (396)
                                  +..   ...++..|+||+++|...+.
T Consensus       339 ------------l~~---~~v~~~~~~~~~~~~~~~~~  361 (376)
T 2aja_A          339 ------------LSI---PSVLALTKANNYYINETGGR  361 (376)
T ss_dssp             ------------TTS---HHHHHSCC------------
T ss_pred             ------------HcC---hHHHHHHHHhcccccccccc
Confidence                        433   37788999999999886544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=8.7e-30  Score=223.12  Aligned_cols=177  Identities=16%  Similarity=0.127  Sum_probs=124.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..|.||||.|+..|+.++++.|+++|  .++  +. +..|.||||+|+..|+.+++++|++.|++   ++.+|..|.||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~--~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~   73 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHG--MRV--KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITA   73 (239)
T ss_dssp             ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccC--CCc--cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCH
Confidence            456999999999999999999999998  666  43 36789999999999999999999999998   56667799999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHH
Q 037504          135 IVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENER  214 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ||+|+..|+.+++++|+++++                                                           
T Consensus        74 L~~A~~~g~~~~v~~Ll~~ga-----------------------------------------------------------   94 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQFGV-----------------------------------------------------------   94 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCC-----------------------------------------------------------
Confidence            999999999999999997664                                                           


Q ss_pred             HHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCC-chhhhh--hcCCCC
Q 037504          215 ALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGN-NILHLA--GKLPPL  291 (396)
Q Consensus       215 ~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~-TpLh~A--~~~~~~  291 (396)
                                        +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|. ||||+|  +..|+.
T Consensus        95 ------------------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           95 ------------------NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             ------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             ------------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cceecCCCCcchHHHHHHhhhccH
Confidence                              3567788999999999999999999999999999    888998777 999999  788999


Q ss_pred             CccccccchhHhHHHHHHHHHHHhhhcchhhhhhh---------cCCCCCchhhHHH
Q 037504          292 NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEK---------NNDGLTPGDLFIK  339 (396)
Q Consensus       292 ~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~---------~~~g~tpl~~a~~  339 (396)
                      +++++|                   +..+++++..         +..|.+|++++.+
T Consensus       153 ~~~~~L-------------------l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          153 QCSQFL-------------------YGVQEKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             CHHHHH-------------------HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             HHHHHH-------------------HHhhhcccccccceEEEEeccCCCCCCccccc
Confidence            999887                   4456665554         6678888888754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=3.4e-29  Score=204.37  Aligned_cols=151  Identities=22%  Similarity=0.238  Sum_probs=136.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG  137 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~  137 (396)
                      +.||||.|+..|+.+++++|++.. ..++  +.+|..|.||||+ +..|+.+++++|+++|++   ++.+|..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~--~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRE-LVHP--DALNRFGKTALQV-MMFGSTAIALELLKQGAS---PNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT-CCCT--TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhh-CcCc--cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHH
Confidence            579999999999999999999982 2344  9999999999999 999999999999999999   56667799999999


Q ss_pred             HHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHH
Q 037504          138 AASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALE  217 (396)
Q Consensus       138 A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (396)
                      |+..|+.+++++|++.|+                                                              
T Consensus        75 A~~~~~~~~v~~Ll~~g~--------------------------------------------------------------   92 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGA--------------------------------------------------------------   92 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred             HHHcCcHHHHHHHHHcCC--------------------------------------------------------------
Confidence            999999999999997664                                                              


Q ss_pred             HHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          218 LVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       218 ~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                                     +++.+|..|+||||+|++.|+.+++++|++. ++    ++.+|..|.||||+|+..|+.+++++|
T Consensus        93 ---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~----~~~~~~~g~t~l~~A~~~~~~~~v~~L  152 (156)
T 1bd8_A           93 ---------------DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD----LHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             ---------------CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC----TTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             ---------------CCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC----CCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence                           3556788899999999999999999999999 77    889999999999999999998888776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.9e-29  Score=233.97  Aligned_cols=244  Identities=12%  Similarity=0.089  Sum_probs=162.5

Q ss_pred             CCCCccccccccCCCc----ccccccchHHHHHHHcCCHHHHHHHHHhCcc-----ccccccCCCCchHHHHHHHcCCHH
Q 037504            2 AHSAPLELHVYSNPPV----EEIRTRRLKLYRVALNGDWARAKVIYDEHKD-----EIGDVITRLGDTALHVAAAANRID   72 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~----~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~~g~t~Lh~A~~~g~~~   72 (396)
                      ||.+++++++..+.+.    ..+..|.||||+|+..|+.++|++|++. |+     +++.. +   .||||+|+..|+.+
T Consensus       103 G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~-~---~TpLh~Aa~~G~~e  177 (376)
T 2aja_A          103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAE-N---YHAFRLAAENGHLH  177 (376)
T ss_dssp             CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHH-H---HHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCC-C---CCHHHHHHHCCCHH
Confidence            6788899998887632    3466789999999999999999999986 64     34333 2   99999999999999


Q ss_pred             HHHHHHHHhhhcccchhc--ccCCCCcHHHHHH-HcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHH
Q 037504           73 FVKKLVKKMKAENLDLAK--RNRIGCTALFYAA-ASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF  149 (396)
Q Consensus        73 ~v~~Ll~~~~~~~~d~~~--~d~~g~tpLh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~  149 (396)
                      +|++|++.|  +++  +.  .|..|.||||+|+ ..|+.++|++|++.|+          .|.||||+|+..|+.+++++
T Consensus       178 iv~~Ll~~g--a~~--~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga----------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          178 VLNRLCELA--PTE--ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV----------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             HHHHHHHSC--GGG--HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH----------HHHHHHHCTTTTTTTTHHHH
T ss_pred             HHHHHHHcC--Ccc--chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC----------ccchHHHHHHHCCCHHHHHH
Confidence            999999998  766  55  8889999999999 9999999999999774          38899999999999999999


Q ss_pred             HHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCc-----chhhhhhhccchhhhhHHHHHHHHHHHH
Q 037504          150 LYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPR-----GIFQRYFNLGAKAVENERALELVELLWE  224 (396)
Q Consensus       150 Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ll~  224 (396)
                      |++.++. ..  .             ..++++.|+..|+........     ...+.+...+..     ...+.++++++
T Consensus       244 L~~~ga~-~~--~-------------~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-----~~~~~~~~Ll~  302 (376)
T 2aja_A          244 IARHVNR-LK--E-------------MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-----VLLDDIRFLLS  302 (376)
T ss_dssp             HHHHHHH-HH--H-------------HHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-----GGHHHHHHHHT
T ss_pred             HHhcCcc-cc--c-------------ccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-----hHHHHHHHHHh
Confidence            9998871 10  0             045777787777554322100     001111111111     12334444332


Q ss_pred             H----HHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccc
Q 037504          225 N----FLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI  296 (396)
Q Consensus       225 ~----ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~  296 (396)
                      .    .+...+    .....+.||||+|++.|+.+++++|++.|.       .+|..|+|++.+|-+.|..++.++
T Consensus       303 ~~~vk~l~~~g----~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          303 IPGIKALAPTA----TIPGDANELLRLALRLGNQGACALLLSIPS-------VLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             STTTGGGSSCC----SSTTCCCHHHHHHHHHTCTTHHHHHTTSHH-------HHHSCC------------------
T ss_pred             ChhhhhhhccC----CCCCCccHHHHHHHHcCcHHHHHHHHcChH-------HHHHHHHhccccccccccccHHHH
Confidence            1    000112    223457899999999999999999999764       368899999999999999887654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.4e-27  Score=190.18  Aligned_cols=127  Identities=14%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCC-CCc
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRI-GCT   97 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~-g~t   97 (396)
                      .+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|++.|  +++  +.+|.. |.|
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~--~~~~~~~g~t   80 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHG--AEP--NCADPATLTR   80 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHT--CCS--SCCBTTTTBC
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCC--CCC--CCcCCCCCCC
Confidence            566777888888888888888877765 7777776 7778888888888 8888888888777  665  777777 788


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88888888888888888888877   44556678888888888888888888877764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=4e-28  Score=203.53  Aligned_cols=158  Identities=15%  Similarity=0.115  Sum_probs=121.1

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCH----HHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRI----DFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      +.++|+.|++.|+.+.++.++...   ++...+..|+||||+|+..|+.    +++++|++.|  +++  +.+|..|+||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G--adv--n~~d~~g~Tp   78 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG--ADI--KSRTKEGTTL   78 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT--CCS--SCCCTTCCCT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC--CCC--CCCCCCCCcH
Confidence            567888888888888888888652   2344236688888888888875    4888888887  766  8888888888


Q ss_pred             HHHHHHcCC------HHHHHHHHhcCCCCccccCCCCCCC-cHHHHHHhcCC-----HHHHHHHHhhcccCCCCcchhHH
Q 037504           99 LFYAAASGS------VELVKATMEGNEDITMVPQDDKDRM-LPIVGAASLGH-----TEVVEFLYRETKNSLKDDDCIEL  166 (396)
Q Consensus        99 Lh~A~~~g~------~~~v~~Ll~~g~~~~~~~~~d~~g~-tpLh~A~~~~~-----~~~v~~Ll~~~~~~~~~~~g~~~  166 (396)
                      ||+|+..|+      .+++++|+++|++   ++.+|..|. ||||+|+..+.     .+++++|++              
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~--------------  141 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS--------------  141 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT--------------
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH--------------
Confidence            888888776      5778888888888   556666788 88888877443     223333332              


Q ss_pred             HHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHH
Q 037504          167 LVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFH  246 (396)
Q Consensus       167 l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh  246 (396)
                                                                                    ..+.+++.+|..|+||||
T Consensus       142 --------------------------------------------------------------~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A          142 --------------------------------------------------------------QSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             --------------------------------------------------------------STTCCTTCCCTTSCCHHH
T ss_pred             --------------------------------------------------------------hcCCCCcccCCCCCCHHH
Confidence                                                                          246678889999999999


Q ss_pred             HHHHcCcHHHHHHHHhhccc
Q 037504          247 IAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       247 ~A~~~~~~~~v~~Ll~~g~~  266 (396)
                      +|++.|+.+++++|.+....
T Consensus       160 ~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          160 FVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999987765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.1e-27  Score=195.41  Aligned_cols=142  Identities=16%  Similarity=0.138  Sum_probs=111.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCc-
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRML-  133 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t-  133 (396)
                      +..|.||||+|+..|+.++|++|++.|  .++  +.+|..|+||||+|+ .|+.+++++|+++|++   ++.+|..|.| 
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---~~~~d~~g~tt   80 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAG--ANP--NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTR   80 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTT--CCT--TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCC
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcC--CCC--CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---CCCcCCCCCcH
Confidence            678999999999999999999999987  666  889999999999985 8999999999999998   5666778998 


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH
Q 037504          134 PIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE  213 (396)
Q Consensus       134 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      |||+|+..|+.+++++|+++++                                                          
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga----------------------------------------------------------  102 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGA----------------------------------------------------------  102 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTC----------------------------------------------------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCC----------------------------------------------------------
Confidence            9999999999999999997664                                                          


Q ss_pred             HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhh
Q 037504          214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA  285 (396)
Q Consensus       214 ~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A  285 (396)
                                         +++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|.||.+-+
T Consensus       103 -------------------~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          103 -------------------RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG----TRGSNHARIDAAEGP  151 (156)
T ss_dssp             -------------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             -------------------CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC----CCccCcCcCcccccC
Confidence                               3556788899999999999999999999999999    889999999998744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.3e-27  Score=187.92  Aligned_cols=121  Identities=18%  Similarity=0.131  Sum_probs=110.5

Q ss_pred             ccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccC
Q 037504           47 KDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQ  126 (396)
Q Consensus        47 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~  126 (396)
                      +.+++.. +..|.||||+|+..|+.+++++|++.|  .++  +.+|..|+||||+|+. |+.+++++|+++|++   ++.
T Consensus         2 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~   72 (136)
T 1d9s_A            2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEAG--ADP--NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNC   72 (136)
T ss_dssp             CCCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSC
T ss_pred             CCCccCC-CCCCccHHHHHHHcCCHHHHHHHHHcC--CCc--CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCC
Confidence            4567777 899999999999999999999999998  776  9999999999999999 999999999999999   556


Q ss_pred             CCCC-CCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccch
Q 037504          127 DDKD-RMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSY  176 (396)
Q Consensus       127 ~d~~-g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~  176 (396)
                      +|.. |.||||+|+..|+.+++++|++.++ .+..+..|.+||+.+...+..
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  124 (136)
T 1d9s_A           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR  124 (136)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            6778 9999999999999999999999998 677888999999999887654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=6.9e-28  Score=202.07  Aligned_cols=150  Identities=14%  Similarity=0.129  Sum_probs=124.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc-CCCCcHHHHHHHcCCH----HHHHHHHhcCCCCccccCCCCCCC
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN-RIGCTALFYAAASGSV----ELVKATMEGNEDITMVPQDDKDRM  132 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d-~~g~tpLh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~d~~g~  132 (396)
                      +.++|+.|++.|+.+.++.+++.+    +  +.++ ..|+||||+|+..|+.    +++++|+++|++   ++.+|..|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~----~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~   76 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG----Y--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGT   76 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS----S--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---SSCCCTTCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC----c--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---CCCCCCCCC
Confidence            468899999999999999999865    2  4455 7899999999999975    599999999999   566677999


Q ss_pred             cHHHHHHhcCCH------HHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhcc
Q 037504          133 LPIVGAASLGHT------EVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG  206 (396)
Q Consensus       133 tpLh~A~~~~~~------~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~  206 (396)
                      ||||+|+..++.      +++++|+++                                                     
T Consensus        77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~-----------------------------------------------------  103 (186)
T 3t8k_A           77 TLFFPLFQGGGNDITGTTELCKIFLEK-----------------------------------------------------  103 (186)
T ss_dssp             CTHHHHHHHCTTCHHHHHHHHHHHHHT-----------------------------------------------------
T ss_pred             cHHHHHHHcCCcchhhHHHHHHHHHHC-----------------------------------------------------
Confidence            999999988863      344444443                                                     


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCC-cHHHHHHHcC-----cHHHHHHHHh-hccccccccccccCCCC
Q 037504          207 AKAVENERALELVELLWENFLFKYPDLIWKFDENGH-TIFHIAVSNR-----MREIFKFIFE-ISSVADLLFDSKDKDGN  279 (396)
Q Consensus       207 ~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~g~~~~~~~n~~d~~g~  279 (396)
                                              ++++|.+|..|+ ||||+|+..+     ..+++++|++ +|++    ++.+|..|+
T Consensus       104 ------------------------Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----~~~~d~~G~  155 (186)
T 3t8k_A          104 ------------------------GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----LLIKDKWGL  155 (186)
T ss_dssp             ------------------------TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----TTCCCTTSC
T ss_pred             ------------------------CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----CcccCCCCC
Confidence                                    556777788888 8888888743     4579999999 9999    899999999


Q ss_pred             chhhhhhcCCCCCccccc
Q 037504          280 NILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       280 TpLh~A~~~~~~~~~~~l  297 (396)
                      ||||+|++.|+.+++++|
T Consensus       156 TpL~~A~~~~~~~~v~~L  173 (186)
T 3t8k_A          156 TALEFVKRCQKPIALKMM  173 (186)
T ss_dssp             CHHHHHHTTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHH
Confidence            999999999998888776

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.7e-26  Score=183.86  Aligned_cols=128  Identities=21%  Similarity=0.262  Sum_probs=117.1

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      .....+.||||+|+..|+.++++.|++. +.+++.. |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.|
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~d~~g~t   82 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG--ADV--NAVDAIGFT   82 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTCCC
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CcCCCCCCC
Confidence            4566789999999999999999999986 8999988 999999999999999999999999998  776  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRET  154 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~  154 (396)
                      |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999   5566779999999999999999999999865

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=7.9e-27  Score=190.35  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=117.0

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      ..+..|.||||+|+..|+.++|++|++. +.+++.. +..|+||||+|+ .|+.+++++|++.|  +++  +.+|..|.|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g--~~~--~~~d~~g~t   79 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHG--AEP--NCADPATLT   79 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTT--CCC--CCCCTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcC--CCC--CCcCCCCCc
Confidence            3567789999999999999999999976 8999988 899999999985 99999999999998  776  999999999


Q ss_pred             -HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchh
Q 037504           98 -ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCI  164 (396)
Q Consensus        98 -pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~  164 (396)
                       |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|+ .+..+..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  145 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARI  145 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcC
Confidence             99999999999999999999999   56667799999999999999999999999998 566666773

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.4e-25  Score=175.73  Aligned_cols=125  Identities=30%  Similarity=0.424  Sum_probs=117.4

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY  101 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~  101 (396)
                      +|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+.+++++|++.|  .++  +.+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~--~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcC--CCC--cccCCCCCcHHHH
Confidence            489999999999999999999986 8888888 899999999999999999999999998  776  8999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          102 AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        75 A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHcChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999   55667799999999999999999999999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=4.4e-25  Score=172.80  Aligned_cols=126  Identities=33%  Similarity=0.459  Sum_probs=114.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHH
Q 037504           57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIV  136 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh  136 (396)
                      +|+||||+|+..|+.+++++|++.+  .++  +.+|..|.||||+|+..|+.+++++|+++|++   ++.+|..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT--CCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC--CCC--CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCcHHH
Confidence            5899999999999999999999998  666  88999999999999999999999999999998   5566778999999


Q ss_pred             HHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHH
Q 037504          137 GAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERAL  216 (396)
Q Consensus       137 ~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (396)
                      +|+..|+.+++++|++.++                                                             
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~-------------------------------------------------------------   92 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGA-------------------------------------------------------------   92 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTC-------------------------------------------------------------
T ss_pred             HHHHcChHHHHHHHHHcCC-------------------------------------------------------------
Confidence            9999999999999997654                                                             


Q ss_pred             HHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccc
Q 037504          217 ELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       217 ~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  266 (396)
                                      +++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        93 ----------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           93 ----------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             ----------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ----------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                            2456678899999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.5e-25  Score=176.99  Aligned_cols=126  Identities=25%  Similarity=0.337  Sum_probs=112.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      ...+.||||+|+..|+.+++++|++.|  .++  +.+|..|.||||+|+..|+.+++++|+++|++   ++.+|..|.||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~   83 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANG--ADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTP   83 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcC--CCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCH
Confidence            567899999999999999999999998  776  89999999999999999999999999999999   55667799999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHH
Q 037504          135 IVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENER  214 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ||+|+..|+.+++++|++.++                                                           
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~-----------------------------------------------------------  104 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGA-----------------------------------------------------------  104 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCC-----------------------------------------------------------
Confidence            999999999999999997654                                                           


Q ss_pred             HHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhc
Q 037504          215 ALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEIS  264 (396)
Q Consensus       215 ~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  264 (396)
                                        +++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus       105 ------------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          105 ------------------DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             ------------------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                              34566788999999999999999999999876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.8e-25  Score=196.09  Aligned_cols=28  Identities=0%  Similarity=-0.085  Sum_probs=24.6

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhhccc
Q 037504          239 ENGHTIFHIAVSNRMREIFKFIFEISSV  266 (396)
Q Consensus       239 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  266 (396)
                      ..+.||||+|+..|+.+++++|++++.+
T Consensus       158 ~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            3478999999999999999999998665

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=9.4e-26  Score=179.72  Aligned_cols=129  Identities=14%  Similarity=0.111  Sum_probs=115.7

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      .++..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~--~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHK--ALV--NTTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--Ccc--cCcCCCCCC
Confidence            5688899999999999999999999985 8999988 999999999999999999999999998  776  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..+..+++++|.+...
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999999999   56667899999999999999888888776543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=6.4e-25  Score=174.86  Aligned_cols=124  Identities=20%  Similarity=0.220  Sum_probs=100.9

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHH
Q 037504           90 KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK  169 (396)
Q Consensus        90 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~  169 (396)
                      .+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++.++              
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------------   67 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA--------------   67 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------
Confidence            5677888888888888888888888888887   45566688888888888888888888886554              


Q ss_pred             HhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHH
Q 037504          170 LIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAV  249 (396)
Q Consensus       170 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~  249 (396)
                                                                                     +++.+|..|+||||+|+
T Consensus        68 ---------------------------------------------------------------~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A           68 ---------------------------------------------------------------LVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             ---------------------------------------------------------------CTTCCCGGGCCHHHHHH
T ss_pred             ---------------------------------------------------------------cccCcCCCCCCHHHHHH
Confidence                                                                           24456777889999999


Q ss_pred             HcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          250 SNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       250 ~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ..|+.+++++|+++|++    ++.+|..|+||||+|+..+..+++.++
T Consensus        85 ~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGAS----RNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            99999999999998888    788889999999999888777766665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1e-24  Score=170.27  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=103.7

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHH
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL   99 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpL   99 (396)
                      +..|.||||+|+..|+.++++.|++. +.+++.. |..|+||||+|+..|+.+++++|++.|  +++  +.+|..|+|||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--~~~d~~g~tpL   77 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKG--ADI--NAPDKHHITPL   77 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTT--CCT--TCCCTTSCCHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCC--CcCCCCCCCHH
Confidence            45678999999999999999999985 8899888 999999999999999999999999988  776  99999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHH
Q 037504          100 FYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE  145 (396)
Q Consensus       100 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~  145 (396)
                      |+|+..|+.+++++|+++|++   ++.+|..|.||||+|...+..+
T Consensus        78 ~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHHHHH
Confidence            999999999999999999999   5566779999999995444433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.3e-24  Score=182.11  Aligned_cols=111  Identities=23%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc-CCCCcH
Q 037504           20 IRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN-RIGCTA   98 (396)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d-~~g~tp   98 (396)
                      +..|.||||+|+..|+.++++.|++  +.+++.+ |..|+||||+|+..|+.+++++|++.|  +++  +.+| ..|+||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~--~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAG--ADL--DHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CcCCCCCCCCH
Confidence            4566777777777777777777775  5666666 677777777777777777777777766  555  6666 667777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAAS  140 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~  140 (396)
                      ||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+.
T Consensus       114 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          114 LHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELARE  152 (183)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHH
Confidence            7777777777777777777776   44455567777777764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=4e-24  Score=193.13  Aligned_cols=141  Identities=20%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccc---cCCCCCCCcHHHHHHhc---CCHHHHHHHHhhcc-cCCCCcchhHHH
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMV---PQDDKDRMLPIVGAASL---GHTEVVEFLYRETK-NSLKDDDCIELL  167 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~---~~~d~~g~tpLh~A~~~---~~~~~v~~Ll~~~~-~~~~~~~g~~~l  167 (396)
                      +.++||.|+..|+.+.++.|++.|++++..   ...|..|.||||+|+..   ++.+++++|++.++ .+..+.+|    
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G----  226 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG----  226 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC----
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC----
Confidence            345555555555555555555555553211   00244555566655554   55555555555555 33344444    


Q ss_pred             HHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHH
Q 037504          168 VKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHI  247 (396)
Q Consensus       168 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~  247 (396)
                               .||||+|+..|                           ..++++.|++     .+++++.+|.+|.||||+
T Consensus       227 ---------~TpLh~A~~~g---------------------------~~~~v~~Ll~-----~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          227 ---------NTALHYAALYN---------------------------QPDCLKLLLK-----GRALVGTVNEAGETALDI  265 (301)
T ss_dssp             ---------CCHHHHHHHTT---------------------------CHHHHHHHHH-----TTCCCSCCCTTSCCHHHH
T ss_pred             ---------CCHHHHHHHcC---------------------------CHHHHHHHHH-----cCCCCCCcCCCCCCHHHH
Confidence                     55555555555                           2344443332     456688889999999999


Q ss_pred             HHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCC
Q 037504          248 AVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPP  290 (396)
Q Consensus       248 A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~  290 (396)
                      |+..|+.+++++|+++|++          .|.||||+|+..|+
T Consensus       266 A~~~~~~~iv~~Ll~~ga~----------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          266 ARKKHHKECEELLEQAQAG----------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHTCHHHHHHHHHHHHH----------TTSSCCC-------
T ss_pred             HHHcCCHHHHHHHHHhcCC----------CCCChhHHHHhcCC
Confidence            9999999999999999876          48999999999886

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.9e-24  Score=181.11  Aligned_cols=125  Identities=21%  Similarity=0.196  Sum_probs=108.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCC-CCCCc
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDD-KDRML  133 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t  133 (396)
                      +..|.||||+|+..|+.+++++|++ +  .++  +.+|..|+||||+|+..|+.+++++|+++|+++   +.+| ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~--~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D--RDV--DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---DHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCC
Confidence            5678999999999999999999999 6  666  999999999999999999999999999999994   4445 68999


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhc---cchhhHHHHHHhcC
Q 037504          134 PIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIET---DSYETALHVLARKN  187 (396)
Q Consensus       134 pLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~---~~~~t~L~~a~~~~  187 (396)
                      |||+|+..|+.+++++|+++++ .+..+.+|.++++.+...   ....++|++|++.|
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~  170 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG  170 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcC
Confidence            9999999999999999999998 677888997777777653   33467777777666

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=4.2e-24  Score=193.01  Aligned_cols=140  Identities=19%  Similarity=0.205  Sum_probs=120.7

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccc-----cCCCCchHHHHHHHc---CCHHHHHHHHHHhhhcccchhcccCC
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDV-----ITRLGDTALHVAAAA---NRIDFVKKLVKKMKAENLDLAKRNRI   94 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~d~~~~d~~   94 (396)
                      +.++|+.|+..|+.+.++.|++. +.+++..     .+..|.||||+|+..   |+.+++++|++.|  +++  +.+|..
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--adv--n~~d~~  225 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GHL--DAKAAD  225 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS--SCT--TCCCTT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC--CCC--CCCCCC
Confidence            45789999999999999999965 8888772     388999999999997   8999999999998  777  999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhcc
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETD  174 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~  174 (396)
                      |+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++.     .|           
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g-----------  286 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TF-----------  286 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TT-----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CC-----------
Confidence            99999999999999999999999999   566778999999999999999999999998872     22           


Q ss_pred             chhhHHHHHHhcCC
Q 037504          175 SYETALHVLARKNL  188 (396)
Q Consensus       175 ~~~t~L~~a~~~~~  188 (396)
                        .||||+|+++|+
T Consensus       287 --~tpLh~A~~~g~  298 (301)
T 2b0o_E          287 --AFPLHVDYSWVI  298 (301)
T ss_dssp             --SSCCC-------
T ss_pred             --CChhHHHHhcCC
Confidence              899999999883

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.4e-24  Score=187.62  Aligned_cols=128  Identities=19%  Similarity=0.214  Sum_probs=112.9

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH-hhhcccchhcccCCCCc
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK-MKAENLDLAKRNRIGCT   97 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~d~~~~d~~g~t   97 (396)
                      .+..|.||||+|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.++|++|++. |  .++  +.+|..|.|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g--~~~--~~~d~~g~t  142 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPN--IEL--NQQNKLGDT  142 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTT--CCC--CCCCTTSCC
T ss_pred             cccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCC--CCc--cccCCCCCC
Confidence            456789999999999999999999985 8999988 99999999999999999999999998 6  666  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.++++.|++.++
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            99999999999999999999999   55667799999999999999999999999988

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=3.3e-24  Score=185.40  Aligned_cols=129  Identities=19%  Similarity=0.238  Sum_probs=103.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCCc
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG-NEDITMVPQDDKDRML  133 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t  133 (396)
                      +..|.||||+|+..|+.+++++|++.|  .++  +.+|..|+||||+|+..|+.+++++|++. |++   ++.+|..|.|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~t  142 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNR--VGV--NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDT  142 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCC
T ss_pred             ccccccccccccccCcHHHHHHHHhCC--CCc--cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCC
Confidence            567889999999999999999999987  666  88899999999999999999999999998 888   5566778999


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH
Q 037504          134 PIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE  213 (396)
Q Consensus       134 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      |||+|+..|+.+++++|++.|+                                                          
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga----------------------------------------------------------  164 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGA----------------------------------------------------------  164 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTC----------------------------------------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC----------------------------------------------------------
Confidence            9999999999999999987665                                                          


Q ss_pred             HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcccc
Q 037504          214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA  267 (396)
Q Consensus       214 ~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  267 (396)
                                         +++.+|..|+||||+|+..++.++++.|++.|++.
T Consensus       165 -------------------~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          165 -------------------RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             -------------------CSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             -------------------CCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence                               34566778889999999888889999998888873

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=6.3e-24  Score=186.29  Aligned_cols=120  Identities=19%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      +.+++.+++..|+.+.+..+.. .+.++    +..|.||||+|+..|+.+++++|++ +  .++  +.+|..|+||||+|
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~-~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~--~~~d~~g~t~L~~A   84 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSY-IAADV----VSEYETPWWTAARKADEQALSQLLE-D--RDV--DAVDENGRTALLFV   84 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGG-SCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT-T--CCT--TCBCTTSCBHHHHH
T ss_pred             CccHHHHHHHcCCCcccccccc-ccccc----ccCCCCHHHHHHHcCCHHHHHHHHc-C--CCC--CCcCCCCCCHHHHH
Confidence            4455555555555544433222 12222    3457788888888888888888877 5  555  77777788888888


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCC-CCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDD-KDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      +..|+.+++++|+++|+++   +.+| ..|+||||+|+..|+.+++++|+++++
T Consensus        85 ~~~g~~~~v~~Ll~~ga~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  135 (244)
T 3ui2_A           85 AGLGSDKCVRLLAEAGADL---DHRDMRGGLTALHMAAGYVRPEVVEALVELGA  135 (244)
T ss_dssp             HHHTCHHHHHHHHHTTCCT---TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHHcCCCC---CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            8888888888888888774   3334 467788888888888887777776554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.1e-22  Score=158.61  Aligned_cols=113  Identities=25%  Similarity=0.347  Sum_probs=100.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +..|.||||+|+..|+.+++++|++.+  .++  +.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG--EDV--NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT--CCT--TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC--CCc--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCH
Confidence            567999999999999999999999988  666  99999999999999999999999999999999   56677899999


Q ss_pred             HHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcC
Q 037504          135 IVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKN  187 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~  187 (396)
                      ||+|+..|+.+++++|++.++ .+..+.+|             .||||+|...+
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-------------~t~l~~A~~~~  117 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDG-------------LTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-------------CCHHHHCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-------------CCHHHHhCCHH
Confidence            999999999999999999998 66677777             88888885443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=5.8e-22  Score=176.95  Aligned_cols=126  Identities=23%  Similarity=0.304  Sum_probs=114.6

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCcccccccc-----CCCCchHHHHHHHc---CCHHHHHHHHHHhhhcccchhcccC
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVI-----TRLGDTALHVAAAA---NRIDFVKKLVKKMKAENLDLAKRNR   93 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~-----~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~d~~~~d~   93 (396)
                      ...++|+.|+..|+.+.++.++.. +.+++...     +..|.||||+|+..   |+.+++++|++.|  +++  +.+|.
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g--a~i--n~~d~  203 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS--GNL--DKQTG  203 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC--SCT--TCCCT
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC--CCc--cccCC
Confidence            446899999999999999999986 77644322     78899999999999   8999999999998  777  99999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           94 IGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        94 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      .|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus       204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999   66678899999999999999999999999987

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.3e-21  Score=174.77  Aligned_cols=46  Identities=17%  Similarity=0.044  Sum_probs=37.7

Q ss_pred             CcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcC
Q 037504          231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKL  288 (396)
Q Consensus       231 ~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~  288 (396)
                      +++++.+|.+|+||||+|+..|+.+++++|+++|++            .+++|.++..
T Consensus       228 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~v~~  273 (278)
T 1dcq_A          228 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG------------RFNSHVHVEY  273 (278)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT------------CCCSSCCCCC
T ss_pred             CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcceeeec
Confidence            445778889999999999999999999999999886            3566666554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.8e-22  Score=147.42  Aligned_cols=91  Identities=35%  Similarity=0.496  Sum_probs=52.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG  137 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~  137 (396)
                      |+||||+|+..|+.+++++|++.|  +++  +.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC--CCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHH
Confidence            556666666666666666666555  444  55556666666666666666666666666655   33444456666666


Q ss_pred             HHhcCCHHHHHHHHhhcc
Q 037504          138 AASLGHTEVVEFLYRETK  155 (396)
Q Consensus       138 A~~~~~~~~v~~Ll~~~~  155 (396)
                      |+..|+.+++++|++.|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            666666666666665543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=4.3e-22  Score=183.92  Aligned_cols=126  Identities=17%  Similarity=0.150  Sum_probs=117.2

Q ss_pred             cccchHHHHHHHc-CCHHHHHHHHHhCccccccccC--CCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           21 RTRRLKLYRVALN-GDWARAKVIYDEHKDEIGDVIT--RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        21 ~~g~t~Lh~A~~~-g~~~~v~~ll~~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      ..+.|+||.|+.. |+.++++.||+. |++++.. +  ..|.||||+|+..|+.++|++|++.|  +++  +.+|..|+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G--adv--n~~d~~G~T  270 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNG--ANV--NQADSAGRG  270 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCC
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcC--CCC--CCCCCCCCC
Confidence            3456899999999 999999999975 8999987 6  88999999999999999999999998  777  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+..+.
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999999   56677899999999999999999999998876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=4.7e-22  Score=146.88  Aligned_cols=93  Identities=27%  Similarity=0.392  Sum_probs=86.9

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY  101 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~  101 (396)
                      +|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++.|  +++  +.+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~--~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCC--CccCCCCCCHHHH
Confidence            489999999999999999999985 8999988 999999999999999999999999998  776  9999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC
Q 037504          102 AAASGSVELVKATMEGNED  120 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~  120 (396)
                      |+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999975

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.87  E-value=7.3e-22  Score=191.01  Aligned_cols=125  Identities=19%  Similarity=0.224  Sum_probs=115.1

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccc-----cCCCCchHHHHHHH---cCCHHHHHHHHHHhhhcccchhcccCC
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDV-----ITRLGDTALHVAAA---ANRIDFVKKLVKKMKAENLDLAKRNRI   94 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~d~~~~d~~   94 (396)
                      ..+.||.|+..|+.+.|+.||+. |++++..     .+..|.||||+||.   .|+.++|++|++.|  +++  |.+|..
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g--a~v--n~~d~~  206 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GHL--DAKAAD  206 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS--CCT--TCCCSS
T ss_pred             cHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC--CCC--CccCCC
Confidence            34789999999999999999986 7888754     26789999999976   89999999999998  777  999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       207 g~TpLh~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          207 GNTALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999999999   66678899999999999999999999999998

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=8.2e-22  Score=182.05  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=109.3

Q ss_pred             CCCchHHHHHHHc-CCHHHHHHHHHHhhhcccchhccc--CCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCC
Q 037504           56 RLGDTALHVAAAA-NRIDFVKKLVKKMKAENLDLAKRN--RIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRM  132 (396)
Q Consensus        56 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~d~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~  132 (396)
                      ..+.|+||.|+.. |+.++++.|++.|  +++  +..+  ..|.||||+|+..|+.+++++|+++|++   ++..|..|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~G--adv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---vn~~d~~G~  269 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHG--ADV--NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGR  269 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTT--CCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcC--CCC--CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCC
Confidence            4567899999999 9999999999988  666  7777  8899999999999999999999999998   556677899


Q ss_pred             cHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhh
Q 037504          133 LPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN  212 (396)
Q Consensus       133 tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      ||||+|+..|+.+++++|+++++                                                         
T Consensus       270 TpLh~A~~~g~~~~v~~LL~~Ga---------------------------------------------------------  292 (368)
T 3jue_A          270 GPLHHATILGHTGLACLFLKRGA---------------------------------------------------------  292 (368)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             CHHHHHHHcCcHHHHHHHHHCcC---------------------------------------------------------
Confidence            99999999999999999987654                                                         


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCC
Q 037504          213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLP  289 (396)
Q Consensus       213 ~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~  289 (396)
                                          +++.+|.+|.||||+|+..++.+++++|+..+..... ....+..+.|+|+++....
T Consensus       293 --------------------d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~-~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          293 --------------------DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE-AAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             --------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             --------------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-ccccCCCCCCHHHHHHHHH
Confidence                                3567788999999999999999999999988754321 3456678899999877654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=1.6e-21  Score=150.03  Aligned_cols=107  Identities=23%  Similarity=0.260  Sum_probs=71.4

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      ++..|.||||+|+..|+.++++.|++. +.+++.. |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~--~~~d~~g~tp   78 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKG--ADV--NARSKDGNTP   78 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTTT--CCT--TCCCTTCCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcC--CCC--cccCCCCCCH
Confidence            455667777777777777777776654 6666666 667777777777777777777777766  555  6677777777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      ||+|+..|+.+++++|+++|++   ++.++..|.+|
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~  111 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHH  111 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSS---HHHHSCCCC--
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC---CCcCCcccccc
Confidence            7777777777777777777776   33334455554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=7e-21  Score=146.45  Aligned_cols=108  Identities=27%  Similarity=0.291  Sum_probs=75.8

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHH
Q 037504           90 KRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK  169 (396)
Q Consensus        90 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~  169 (396)
                      .+|.+|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.+++++|++.++              
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------------   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA--------------   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC--------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC--------------
Confidence            4566777777777777777777777777776   44455677777777777777777777776543              


Q ss_pred             HhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHH
Q 037504          170 LIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAV  249 (396)
Q Consensus       170 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~  249 (396)
                                                                                     +++.+|..|+||||+|+
T Consensus        67 ---------------------------------------------------------------~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A           67 ---------------------------------------------------------------DVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             ---------------------------------------------------------------CTTCCCTTCCCTTHHHH
T ss_pred             ---------------------------------------------------------------CCcccCCCCCCHHHHHH
Confidence                                                                           24455666777777777


Q ss_pred             HcCcHHHHHHHHhhccccccccccccCCCCch
Q 037504          250 SNRMREIFKFIFEISSVADLLFDSKDKDGNNI  281 (396)
Q Consensus       250 ~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~Tp  281 (396)
                      ..++.+++++|+++|++    +|.++..|.||
T Consensus        84 ~~~~~~~~~~Ll~~ga~----~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGAD----VNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSS----HHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCC----CCcCCcccccc
Confidence            77777777777777777    66777777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=4e-19  Score=135.41  Aligned_cols=89  Identities=28%  Similarity=0.297  Sum_probs=56.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcH
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLP  134 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tp  134 (396)
                      +.+|.||||+|+..|+.+++++|++.|  +++  +.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i--~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tp   93 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANG--ADV--AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTA   93 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTT--CCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcC--CCC--CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcH
Confidence            556666666666666666666666665  444  66666666666666666666666666666666   34445566666


Q ss_pred             HHHHHhcCCHHHHHHH
Q 037504          135 IVGAASLGHTEVVEFL  150 (396)
Q Consensus       135 Lh~A~~~~~~~~v~~L  150 (396)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            6666666666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.1e-18  Score=132.95  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=83.9

Q ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCC
Q 037504           17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGC   96 (396)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~   96 (396)
                      ...+.+|.|+||+|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|++.|  +++  +.+|..|.
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~g--a~~--~~~d~~g~   91 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAG--ADV--XAQDKFGK   91 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCc--cccccCCC
Confidence            45688899999999999999999999975 8999988 899999999999999999999999998  776  99999999


Q ss_pred             cHHHHHHHcCCHHHHHHH
Q 037504           97 TALFYAAASGSVELVKAT  114 (396)
Q Consensus        97 tpLh~A~~~g~~~~v~~L  114 (396)
                      ||||+|+..|+.+++++|
T Consensus        92 tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHh
Confidence            999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	396
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 2e-15
 Identities = 47/225 (20%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 60  TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
           T LHVA+    +  VK L+++           N    T L  AA +G  E+ K  ++   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETA 179
            +       KD   P+  AA +GHT +V+ L     N           + +   + +   
Sbjct: 58  KVNAK---AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 114

Query: 180 LHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE 239
           +  L  K  + +    +G    +      A +  + + + ELL E              +
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHV-----AAKYGK-VRVAELLLER-----DAHPNAAGK 163

Query: 240 NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHL 284
           NG T  H+AV +   +I K +            S   +G   LH+
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRG--GSP--HSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-13
 Identities = 50/294 (17%), Positives = 83/294 (28%), Gaps = 61/294 (20%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL 86
           L+  +  G     K +         +V     +T LH+AA A   +  K L++       
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQN----KA 57

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQD------------------- 127
            +  + +   T L  AA  G   +VK  +E N +  +                       
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117

Query: 128 -----------DKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY 176
                       K    P+  AA  G   V E L             +E           
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL-------------LERDAHPNAAGKN 164

Query: 177 -ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELV----ELLWENFLFKYP 231
             T LHV    N   +    + +  R  +  + A      L +     ++     L +Y 
Sbjct: 165 GLTPLHVAVHHN---NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 221

Query: 232 DLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
                    G T  H+A      E+   +    +      +  +K G   LHL 
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLV 271

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 45/238 (18%), Positives = 75/238 (31%), Gaps = 30/238 (12%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           +   + G T LHVA   N +D VK L+ +              G T L  AA    VE  
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPR----GGSPHSPAWNGYTPLHIAAKQNQVE-- 212

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLI 171
                  +       +    + P+  AA  GH E+V  L  +  N    +          
Sbjct: 213 -VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK--------- 262

Query: 172 ETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYP 231
              S  T LH++A++           + +    + A        L +        L K+ 
Sbjct: 263 ---SGLTPLHLVAQEGHVPVADV---LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316

Query: 232 DLIWKF----DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
                      + G++  H A      +I   +  + + A    +    DG   L +A
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL--LKNGASP--NEVSSDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 41  VIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALF 100
           V +        +  T+LG + LH AA     D V  L+K          + +  G T L 
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN----GASPNEVSSDGTTPLA 368

Query: 101 YAAASGSVELVKATMEGNEDITMVPQDDKDRM 132
            A   G + +        ++ + V   DK RM
Sbjct: 369 IAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           D  TR+G T LHVA+    I  VK L++     N     + ++G + L  AA  G  ++V
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN----AKTKLGYSPLHQAAQQGHTDIV 346

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
              ++       V     D   P+  A  LG+  V + L
Sbjct: 347 TLLLKNGASPNEV---SSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 35/258 (13%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL 86
           L+    + +    K++               G T LH+AA  N+++  + L++   + N 
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSP--HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN- 225

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
                +  G T L  AA  G  E+V   +    +  +    +K  + P+   A  GH  V
Sbjct: 226 ---AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG---NKSGLTPLHLVAQEGHVPV 279

Query: 147 VEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG 206
            + L +                         T LHV +        +             
Sbjct: 280 ADVLIKHGVMVDATTRM------------GYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 207 AK-------AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKF 259
                    A +     ++V LL +N          +   +G T   IA       +   
Sbjct: 328 KLGYSPLHQAAQQGH-TDIVTLLLKNGA-----SPNEVSSDGTTPLAIAKRLGYISVTDV 381

Query: 260 IFEI-SSVADLLFDSKDK 276
           +  +    + +L   K +
Sbjct: 382 LKVVTDETSFVLVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 38/182 (20%)

Query: 132 MLPIVGAASLGHTEVVEFLYRETKN-SLKDD---------------DCIELLVKL----- 170
           + P+  A+ +GH  +V+ L +   + ++ +                +  + L++      
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 171 IETDSYETALHVLARKN-------LTSSNQNPRGIFQRYFNLGAKAVENERALELVELLW 223
            +    +T LH  AR         L  +N NP             A              
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV------ET 114

Query: 224 ENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILH 283
              L +         + G T  H+A       + + +  +   A    ++  K+G   LH
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL--LERDAHP--NAAGKNGLTPLH 170

Query: 284 LA 285
           +A
Sbjct: 171 VA 172

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.1 bits (160), Expect = 1e-12
 Identities = 33/251 (13%), Positives = 66/251 (26%), Gaps = 13/251 (5%)

Query: 27  LYRVALNGDWARAKVI-YDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
            +  A+ G  +    +      DEI  VI      A  +AA    +  + +L +      
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--PT 151

Query: 86  LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
             +A        A   AA +G + ++    E            ++       A   GH  
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 146 VVEFLYRETKNSLKDDDCIE----------LLVKLIETDSYETALHVLARKNLTSSNQNP 195
           V+ FL          +              +   +        A  +     +       
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 271

Query: 196 RGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMRE 255
             +   Y         +E  L+ +  L      K          + + +  +A+    + 
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 331

Query: 256 IFKFIFEISSV 266
               +  I SV
Sbjct: 332 ACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 15/239 (6%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
            +    VAA       +   +  +   +  +         A   AA +G + ++    E 
Sbjct: 90  SEVICFVAAITGCSSALD-TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR----ETKNSLKDDDCIELLVKLIET 173
                M     ++       AA  GH  V+  L      E    ++ ++        +  
Sbjct: 149 APTEIMAMIQAENYH-AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 174 DSYETAL------HVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFL 227
             +           +LA   +       + +         +  E   A +L     +   
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP--DGVF 265

Query: 228 FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD-SKDKDGNNILHLA 285
                                    + +  +F+  I  +  L    +   D N +L LA
Sbjct: 266 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 41/295 (13%), Positives = 76/295 (25%), Gaps = 43/295 (14%)

Query: 60  TALHVAAAANRIDFVKKLVKKMKAEN-------LDLAKRNRIGCTALFYAAASG---SVE 109
             + +    N     + L       N        D  K+        F AA +G   +++
Sbjct: 48  IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 107

Query: 110 LVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK 169
            +   +  +E + ++     +       AA  GH  V+  L       +           
Sbjct: 108 TLCLLLTSDEIVKVI---QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI------- 157

Query: 170 LIETDSYETALHVLAR-------KNLTSSNQNPRGIFQRYFNLGAKAVENER--ALELVE 220
                    A  + A          L            +  N  A            ++ 
Sbjct: 158 ---QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 221 LLWEN-FLFKYPDL-IWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDG 278
            L +   +  Y ++  +++ E     F     NR++E+       +   D +FD   K  
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN--PDGVFDLVTKSE 272

Query: 279 NNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTP 333
                    L  L R N      L   R LL    +  +           D    
Sbjct: 273 CLQGFYM--LRNLIRRN--DEVLLDDIRFLL---SIPGIKALAPTATIPGDANEL 320

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 13/228 (5%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           GDT LH+A     +  V +LV   +    +L   N +  T L  A  +    +V+  +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
                 + +  +        A        +  L         D +            +  
Sbjct: 63  GASPMALDRHGQTAAHL---ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 119

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
           T      +  L           +   +    AVEN              L ++   +   
Sbjct: 120 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL------SMVQLLLQHGANVNAQ 173

Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
             +G +  H A    +  + + +  + S AD     K+   +  L +A
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTL--VRSGADS--SLKNCHNDTPLMVA 217

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 9   LHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAA 68
           L   ++    +I++ R  L     N   +  +++     +    + +  G +ALH A+  
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--GSSALHSASGR 187

Query: 69  NRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK 112
             +  V+ LV+       D + +N    T L  A +   +++++
Sbjct: 188 GLLPLVRTLVRS----GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           E+G T  HIAV          +  +        D  +      LHLA
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 12/236 (5%)

Query: 54  ITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKA 113
           +T  GDTALH+A       F+  L+    A +  L  +N +G TAL  AA  G       
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGE---AST 60

Query: 114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIET 173
             +       V   ++     +  A  +        L +   +  +D     L      T
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 174 -DSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPD 232
            D+      V ++ N  +  +     ++               + ++    E        
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 233 LIWKFDENGH---TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
                        T  H+AV  +   + + +  + + AD    ++   G   L  A
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELL--LKAGADP--TARMYGGRTPLGSA 232

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 35/248 (14%), Positives = 80/248 (32%), Gaps = 17/248 (6%)

Query: 47  KDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL----DLAKRNRIGCTALFYA 102
           ++ +  +  R   T LH  A+ +  +  + L+     E +    D+   +    T L  A
Sbjct: 22  RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 81

Query: 103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDD 162
             +    LV   M+   D T+  + ++  +       +     ++ ++   TK     ++
Sbjct: 82  VLARRRRLVAYLMKAGADPTIYNKSERSALHQAA---ANRDFGMMVYMLNSTKLKGDIEE 138

Query: 163 CIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELL 222
                +  +   ++      +A   L                  ++  +   AL     +
Sbjct: 139 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA-RKDSEKYKGRTALHYAAQV 197

Query: 223 WENFLFKYPDLIWKF-----DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
               + KY            DE+G T   +A      E+  ++  I   A +  ++ D  
Sbjct: 198 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL--IQQGASV--EAVDAT 253

Query: 278 GNNILHLA 285
            +    LA
Sbjct: 254 DHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 36  WARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIG 95
                   D       D     G TALH AA  + +  VK LV +  +      K++  G
Sbjct: 165 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK---DKQDEDG 221

Query: 96  CTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
            T +  AA  G +E+V   ++    +  V   D         A +  H  +V+   R
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASVEAV---DATDHTARQLAQANNHHNIVDIFDR 275

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 35/227 (15%), Positives = 70/227 (30%), Gaps = 14/227 (6%)

Query: 59  DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN 118
           +  LH A   N    V++L+    +    L ++++ G   L ++ +  + E+    +   
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

Query: 119 EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYET 178
           E++ +    D     P   A S+G+ EVV+ LY        +    +       T  +  
Sbjct: 58  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-----GVTCLHLA 112

Query: 179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFD 238
                   +            +  FN              +    E         +   D
Sbjct: 113 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL---IELLCGLGKSAVNWQD 169

Query: 239 ENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           + G T    A++    +    + E    A+   D  D  G     +A
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVE-KYGAEY--DLVDNKGAKAEDVA 213

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 17/242 (7%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENL 86
           L++  +  ++ + + +       +     + G   LH + +    +    L+ KM+  N 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN- 61

Query: 87  DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
                +  G T    A + G++E+VK+  +      +    ++      +          
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 147 VEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG 206
              +       +KD      L +     S +    +        + Q+ +G    +  L 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL- 180

Query: 207 AKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV 266
                 E   +   LL    + KY       D  G     +A++ ++++ F     +++V
Sbjct: 181 -----AEGHGDAAVLL----VEKYGAEYDLVDNKGAKAEDVALNEQVKKFF-----LNNV 226

Query: 267 AD 268
            D
Sbjct: 227 VD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 8/224 (3%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           GD+ LH+A          ++++++K +   L  +N +  T L  A  +   E+ +A +  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
             D  +        +             +          +      I             
Sbjct: 62  GCDPELRDFRGNTPLHLAC-----EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 116

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
            A        +         +  +    G  A+     L+  +L+    L    D+    
Sbjct: 117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV- 174

Query: 238 DENGHTIFHIAVSNRMREIFKFIFEIS-SVADLLFDSKDKDGNN 280
              G++ + +        I + + +++     +L +S+D++  +
Sbjct: 175 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 44/265 (16%), Positives = 75/265 (28%), Gaps = 46/265 (17%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK----- 112
            +  L  A     +D V++L++     N    +    G T L  A      ++V+     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVN---FQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 113 -----------------ATMEGNEDITMVPQD--------DKDRMLPIVGAASLGHTEVV 147
                            A + G+  +  +           D       + AA  G  + +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 148 EFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKN-------LTSSNQNPRGIFQ 200
           +FLY+   N        E   +        TAL   A K        L            
Sbjct: 122 KFLYKRGANVNLRRKTKE--DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 201 RYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFI 260
                             VE +    L    D+  +  E G T   +AV  +   + + +
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRL 238

Query: 261 FEISSVADLLFDSKDKDGNNILHLA 285
            E     ++  +  D DG   L LA
Sbjct: 239 LE-QEHIEI--NDTDSDGKTALLLA 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 38/150 (25%)

Query: 36  WARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAE----------- 84
              A V       E  + + + G TAL  AA    ++ +K L+ +M A+           
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 85  -----------------------NLDLAKRNRIGCTALFYAAASGSVELVKATME-GNED 120
                                    D+  R   G T L  A     + LV+  +E  + +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 121 ITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           I      D D    ++ A  L   ++ E L
Sbjct: 246 INDT---DSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 53/285 (18%), Positives = 95/285 (33%), Gaps = 46/285 (16%)

Query: 27  LYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK------ 80
           L +   N D    + +  E    +       G T LH A   +R D V+ L++       
Sbjct: 9   LIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 81  -----------------------MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
                                    ++  D+ + +  G TA   AA  G V+ +K   + 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 118 NEDITM-------VPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKL 170
             ++ +         +  K     ++ AA  GH EV++ L  E    +   D +     +
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 171 IETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKY 230
               S + +        L     +     +R       AVE +  L LV+ L    L + 
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-LGLVQRL----LEQE 242

Query: 231 PDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKD 275
              I   D +G T   +AV  ++++I + +      A    D  D
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELL--CKRGAST--DCGD 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 25/243 (10%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
                  A ++   + V +L+++      D+   N  G TAL  A    +V++VK  +E 
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYE 177
             +I     +    +        L   E    + +       + +    L    E    E
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAE--YLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 178 TALHVLARKNLTSSNQNPRGIFQRYFNL-----GAKAVENERALELVELLWENFLFKYPD 232
              + + R+ +               +           +   A      L       Y +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 233 LIW----------KFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNIL 282
           ++             D +G T  H A      E  + +  + ++ D+  ++ +K G    
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL--VENLCDM--EAVNKVGQTAF 269

Query: 283 HLA 285
            +A
Sbjct: 270 DVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 51/308 (16%), Positives = 91/308 (29%), Gaps = 51/308 (16%)

Query: 65  AAAANRIDFVKKLVKKMKAENLDLAKRNRI-----GCTALFYAAASGSVELVKATMEGNE 119
            A   R + +K+ +         + KR +             A +SG  E V   +E   
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETA 179
           DI      + D +  +  A    + ++V+FL     N  + D+   + +    +  Y   
Sbjct: 65  DINYA---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121

Query: 180 LHVLARKNLTSSNQNPRGIFQRYFNLGAKAVE----------------NERALELVELLW 223
              L  +       N  G             E                 +    ++    
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA 181

Query: 224 ENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILH 283
             +L        +  ++G T  H+A +    E+ K + +     D+  + KD DG   LH
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA--RYDV--NIKDYDGWTPLH 237

Query: 284 LAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDL----FIK 339
            A       +              +L              E  N  G T  D+     + 
Sbjct: 238 AAAH---WGKEEAC---------RILVENLCDM-------EAVNKVGQTAFDVADEDILG 278

Query: 340 EHEELKKK 347
             EEL+KK
Sbjct: 279 YLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 1   MAHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDT 60
           M   A   L+      V   ++    L+  A  G     K++     D   ++    G T
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV--NIKDYDGWT 234

Query: 61  ALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA 103
            LH AA   + +  + LV+       D+   N++G TA   A 
Sbjct: 235 PLHAAAHWGKEEACRILVEN----LCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 58  GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
           G TALHVAAA    + +K L++       D+  ++  G T L  AA  G  E  +  +E 
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 118 NEDITMVPQDDKDRMLPIVGAAS--LGHTEVVE 148
             D+  V   +K        A    LG+ E ++
Sbjct: 255 LCDMEAV---NKVGQTAFDVADEDILGYLEELQ 284

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 37/284 (13%)

Query: 3   HSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTAL 62
              P  L+  S+    E  +   +   V+ +         +   +  +   +   G+T L
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 63  HVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDIT 122
           H   +   ++ VK LVK                  A+       S             + 
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171

Query: 123 MVPQDDKDRMLPIVGAASL-GHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALH 181
           +    ++  +  I+  + + G +   ++        +       +      T+  E+  +
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG---TNEKESKPN 228

Query: 182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENG 241
               +                               ++E L   ++    +++   D NG
Sbjct: 229 DKNGER---------------------------KDSILENLDLKWIIA--NMLNAQDSNG 259

Query: 242 HTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
            T  +IA       I   +  +   AD      +K G   +   
Sbjct: 260 DTCLNIAARLGNISIVDAL--LDYGADP--FIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 46/333 (13%), Positives = 103/333 (30%), Gaps = 52/333 (15%)

Query: 4   SAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALH 63
           S+PL++      PV     +++KL        +   + +     +         G ++  
Sbjct: 16  SSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEM-PTSLNNDSSNRNSEGGSSNQ 74

Query: 64  VAAAANRIDFVKKLVKKMKAENLDL-AKRNRIGCTALFYAAASGSVELVKATMEGNEDIT 122
                +    ++++        L+L    +  G T L +  +  ++ELVK  ++   +  
Sbjct: 75  QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL 134

Query: 123 MVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHV 182
                 +  ++  V + +   +   E L       L  +D               T LH 
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-----------SMNRTILHH 183

Query: 183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH 242
           +                            +  A   +++L    + K    I        
Sbjct: 184 IIIT-------------------SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 243 TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAAL 302
           +  +     R   I + +     +A++L +++D +G+  L++A +   L  ++IV     
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANML-NAQDSNGDTCLNIAAR---LGNISIV----- 275

Query: 303 QLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGD 335
               + L                 N  GL P D
Sbjct: 276 ----DALLDYGADP-------FIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 44  DEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA 103
            + ++      T   ++  +      +   ++ L  K    N+ L  ++  G T L  AA
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-LNAQDSNGDTCLNIAA 267

Query: 104 ASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA 139
             G++ +V A ++   D  +    +K  + P+   A
Sbjct: 268 RLGNISIVDALLDYGADPFIA---NKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 7e-08
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 23/228 (10%)

Query: 59  DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN 118
           +  +   A + +++ +K+ +   K+      + ++   TAL +A ++G  E+V+  ++  
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKS---LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 119 EDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYET 178
             +          +     A       V   L +  + +  + +    L      + +E 
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGR--DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 118

Query: 179 ALHVLARK-NLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF 237
           A+ +L    N  + +        R    G              L   + L  Y       
Sbjct: 119 AVMLLEGGANPDAKDHYEATAMHRAAAKG-------------NLKMIHILLYYKASTNIQ 165

Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
           D  G+T  H+A      E  K +  +S  A +    ++K+    L +A
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLL--VSQGASI--YIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           + + + G T LH AA+ NR +    L++       +   ++    TA+  AAA G+   +
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEG----GANPDAKDHYEATAMHRAAAKGN---L 149

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           K               D +   P+  A      E  + L
Sbjct: 150 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 188

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 35/232 (15%), Positives = 60/232 (25%), Gaps = 34/232 (14%)

Query: 133 LPIVGAASLGHTEVVEFLYRETKNSL--KDDDCIELLVKLIETDSYETALHVLARKNLTS 190
           L +   A  G  E ++      K+     D D               TALH       T 
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDS-------------RTALHWACSAGHTE 51

Query: 191 SNQNPRGIFQRYFNLGAKAVENERALELVELLW-ENFLFKYPDLIWKFDENGHTIFHIAV 249
             +    +     +                       L      +   ++NG T  H A 
Sbjct: 52  IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 111

Query: 250 SNRMREIFKFIFEISSVADLLFDSKDKDGNNILHL------AGKLPPLNRLNIVSVAALQ 303
           S    EI   +  +   A+   D+KD      +H          +  L      +     
Sbjct: 112 SKNRHEIAVML--LEGGANP--DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 167

Query: 304 LQRELLWFQ------EVKKVVPRKFAE--EKNNDGLTPGDLFIKEHEELKKK 347
                L         E  K++  + A    +N +  TP  +       + K+
Sbjct: 168 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKR 219

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 27/212 (12%), Positives = 67/212 (31%), Gaps = 18/212 (8%)

Query: 75  KKLVKKMKAENLDL-AKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRML 133
            +++  + A+  +L A  ++ G T+L  AA     +  K  ++   D        +  + 
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 134 PIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQ 193
             V A ++G  +++        N+   D    L++             + A  ++ +++ 
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 194 NPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRM 253
           + +        +                   N L  +       D+   T   +A     
Sbjct: 122 SGKTALHWAAAVNNTE-------------AVNILLMHHANRDAQDDKDETPLFLAAREGS 168

Query: 254 REIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
            E  K +  + + A+   +  D        +A
Sbjct: 169 YEASKAL--LDNFANR--EITDHMDRLPRDVA 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 52  DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
           +     G TALH AAA N  + V  L+      +     ++    T LF AA  GS E  
Sbjct: 117 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRD----AQDDKDETPLFLAAREGSYEAS 172

Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
           KA ++   +  +    D    LP   A+   H ++V  L
Sbjct: 173 KALLDNFANREIT---DHMDRLPRDVASERLHHDIVRLL 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	396
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=310.54  Aligned_cols=305  Identities=18%  Similarity=0.173  Sum_probs=227.3

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      |+.++++.++..+++.. .+..|.||||+|+..|+.+++++||+. |++++.+ +..|+||||+|+..|+.+++++|+..
T Consensus        11 g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~   88 (408)
T d1n11a_          11 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLEN   88 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            55667777777765443 567778888888888888888888875 7777777 77788888888888888888887765


Q ss_pred             hhhc-----------------------------ccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCC
Q 037504           81 MKAE-----------------------------NLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDR  131 (396)
Q Consensus        81 ~~~~-----------------------------~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g  131 (396)
                      +...                             ....+..+..+.++|++|+..++.+++++|+++|++   ++..+.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~---~~~~~~~~  165 (408)
T d1n11a_          89 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNG  165 (408)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSC
T ss_pred             hhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCcC
Confidence            4110                             011244566777888888888888888888888887   44456689


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccc--------------------hhhHHHHHHhcCCCC
Q 037504          132 MLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDS--------------------YETALHVLARKNLTS  190 (396)
Q Consensus       132 ~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~--------------------~~t~L~~a~~~~~~~  190 (396)
                      .+|||+|+..|+.+++++|+.+++ .+..+..|.++++.+.....                    +.|||++|+..+.. 
T Consensus       166 ~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~-  244 (408)
T d1n11a_         166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA-  244 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-
T ss_pred             chHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcH-
Confidence            999999999999999999999887 55677778888877654322                    26888888887743 


Q ss_pred             CCCCCcchhhhhhhcc----------ch---hhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHH
Q 037504          191 SNQNPRGIFQRYFNLG----------AK---AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIF  257 (396)
Q Consensus       191 ~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v  257 (396)
                            ...+......          ..   ........++++++++     .+.+++..+..+.||||.++..++.+++
T Consensus       245 ------~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~-----~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         245 ------EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-----HGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             ------HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-----HTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             ------hHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHH-----CCCccccccccccccchhhcccCcceee
Confidence                  1111111110          00   1111223455555543     4777888999999999999999999999


Q ss_pred             HHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhH
Q 037504          258 KFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLF  337 (396)
Q Consensus       258 ~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a  337 (396)
                      +++++.|++    +|.+|.+|+||||+|++.|+.+++++|                   +.+|++++.+|++|+|||++|
T Consensus       314 ~~ll~~g~~----in~~d~~G~T~Lh~A~~~g~~~iv~~L-------------------l~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         314 KFLLQHQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLL-------------------LKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHTTCCSCCCCSSSCCHHHHH
T ss_pred             eeecccccc----ccccCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCCCCCCCCCCHHHHH
Confidence            999999999    899999999999999999999998887                   779999999999999999999


Q ss_pred             HHH-hHHHHH
Q 037504          338 IKE-HEELKK  346 (396)
Q Consensus       338 ~~~-~~~~~~  346 (396)
                      .+. +.++++
T Consensus       371 ~~~~~~~iv~  380 (408)
T d1n11a_         371 KRLGYISVTD  380 (408)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            876 334443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=273.77  Aligned_cols=217  Identities=24%  Similarity=0.241  Sum_probs=191.6

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      +++.|+.+|..|+.+.|+.+|..++.+++.+ |..|+||||+|+..|+.+++++|++.+  ...  ...+..+.++++++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~~~--~~~--~~~~~~~~~~~~~~   77 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLG--VPV--NDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHHT--CCS--CCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhhcccccccccc--ccc--cccccccccccccc
Confidence            4688999999999999999999989999988 999999999999999999999999997  555  67788899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHH
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      +..++.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|. .+..+..|             .||||
T Consensus        78 ~~~~~~~i~~~Ll~~~~d---~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~-------------~t~L~  141 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE-------------ATAMH  141 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS-------------CCHHH
T ss_pred             ccccccchhHHHhccCce---eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCC-------------Cccch
Confidence            999999999999999998   55678899999999999999999999999988 55566666             89999


Q ss_pred             HHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHH
Q 037504          182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIF  261 (396)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  261 (396)
                      +|+..+                        +   .++++.+     ...+.+++.+|.+|+||||+|++.|+.++|++|+
T Consensus       142 ~a~~~~------------------------~---~~~~~~L-----~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL  189 (223)
T d1uoha_         142 RAAAKG------------------------N---LKMIHIL-----LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV  189 (223)
T ss_dssp             HHHHTT------------------------C---HHHHHHH-----HHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhcC------------------------C---cchhhhh-----ccccceeeeccCCCCceeccccccCcHHHHHHHH
Confidence            999988                        2   3444433     3467789999999999999999999999999999


Q ss_pred             hhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          262 EISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       262 ~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ++|++    ++.+|++|+||||+|. .|+.+++++|
T Consensus       190 ~~Gad----~~~~d~~g~tpl~~A~-~~~~~i~~~L  220 (223)
T d1uoha_         190 SQGAS----IYIENKEEKTPLQVAK-GGLGLILKRM  220 (223)
T ss_dssp             HTTCC----SCCCCTTSCCHHHHCC-TTHHHHHHHH
T ss_pred             HCCCC----CCCCCCCCCCHHHHHH-CCCHHHHhcc
Confidence            99999    8899999999999985 5776655543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-36  Score=262.95  Aligned_cols=219  Identities=18%  Similarity=0.193  Sum_probs=189.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccc-hhcccCCCCcHHHHH
Q 037504           24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLD-LAKRNRIGCTALFYA  102 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d-~~~~d~~g~tpLh~A  102 (396)
                      ++|||+||+.|+.++|+.||+..+.+++.+ |.+|+||||+|+..|+.+++++|++.|  ++++ .+..+..|.+|+|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKM--ENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTTC--TTCCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccchhhhhh--cccccccccccccccccccc
Confidence            589999999999999999999888999888 999999999999999999999999998  5552 246678899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHH
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALH  181 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~  181 (396)
                      +..+..++++.++..+.... ....+..+.||++.++..++.+++++|+..+. ....+..|             +||||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g-------------~t~l~  143 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-------------QIPLH  143 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS-------------CCHHH
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccchhhhhhhhhhhcccccccCCCC-------------CCccc
Confidence            99999999999999988754 45566789999999999999999999999988 44456666             89999


Q ss_pred             HHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHH
Q 037504          182 VLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIF  261 (396)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  261 (396)
                      +|+..+                           ..++++.++    ...+..++.+|.+|+||||+|+.+|+.+++++|+
T Consensus       144 ~a~~~~---------------------------~~~~~~~Ll----~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         144 RAASVG---------------------------SLKLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             HHHHHT---------------------------CHHHHHHHH----TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhcc---------------------------ccccccccc----ccccccccccccccCCchhhhcccccHHHHHHHH
Confidence            999988                           345555554    4466789999999999999999999999999999


Q ss_pred             h-hccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          262 E-ISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       262 ~-~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      + .|++    ++.+|.+|+||||+|+..   +++++|
T Consensus       193 ~~~gad----~~~~d~~g~t~l~~A~~~---~~~~~L  222 (229)
T d1ixva_         193 EKYGAE----YDLVDNKGAKAEDVALNE---QVKKFF  222 (229)
T ss_dssp             HHHCCC----SCCCCTTSCCTGGGCSCH---HHHHHH
T ss_pred             HhcCCC----CCCcCCCCCCHHHHHhhH---HHHHHH
Confidence            6 5999    889999999999999853   455544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=7.4e-37  Score=273.97  Aligned_cols=244  Identities=19%  Similarity=0.141  Sum_probs=201.0

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcH
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTA   98 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tp   98 (396)
                      .+..+.|+|+.||..|+.++|++||+. |++++.+ |.+|.||||+|+..|+.++|++|++++  .+.  ...+..+.||
T Consensus        36 ~~~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~~--~~~--~~~~~~~~~~  109 (291)
T d1s70b_          36 VKFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVENG--ANI--NQPDNEGWIP  109 (291)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCH
T ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCcHHHHHHhcCCceeeeeecccc--ccc--cccccccccc
Confidence            345678999999999999999999986 8999988 999999999999999999999999998  665  7888999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhh
Q 037504           99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYET  178 (396)
Q Consensus        99 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t  178 (396)
                      ||+|+..++.++++.|+++|+.   ....|..+.+|+++|+..+..+.++.++.............           ...
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-----------~~~  175 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE-----------EER  175 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHH-----------HHH
T ss_pred             ccccccccccchhhcccccCcc---cccccccCccccccccccccchhcccccccccccccccccc-----------ccc
Confidence            9999999999999999999988   55567789999999999999999999987654111100000           000


Q ss_pred             HHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHH
Q 037504          179 ALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFK  258 (396)
Q Consensus       179 ~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~  258 (396)
                      +..                                       ......+..........+..|.||||+|+..|+.++++
T Consensus       176 ~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  216 (291)
T d1s70b_         176 IML---------------------------------------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK  216 (291)
T ss_dssp             HHH---------------------------------------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccc---------------------------------------ccchhhhcccccccccccCCCCChhhHHHHcCChhhhc
Confidence            000                                       01111122344445567889999999999999999999


Q ss_pred             HHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHH
Q 037504          259 FIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFI  338 (396)
Q Consensus       259 ~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~  338 (396)
                      +|++.|++    +|.+|..|+||||+|++.|+.+++++|                   +.+|++++.+|++|+|||++|.
T Consensus       217 ~Ll~~g~d----in~~~~~g~TpL~~A~~~g~~~iv~lL-------------------l~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         217 LLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRIL-------------------VENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH-------------------HHTTCCTTCCCTTSCCTTTSCC
T ss_pred             ccccceec----ccccccCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999    889999999999999999999999887                   7789999999999999999997


Q ss_pred             HHhHHH
Q 037504          339 KEHEEL  344 (396)
Q Consensus       339 ~~~~~~  344 (396)
                      +...++
T Consensus       274 e~~~~~  279 (291)
T d1s70b_         274 EDILGY  279 (291)
T ss_dssp             SGGGHH
T ss_pred             HHHHHH
Confidence            643333

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-36  Score=267.71  Aligned_cols=224  Identities=19%  Similarity=0.097  Sum_probs=161.5

Q ss_pred             cccccchHHHHHHHcCCHHHHHHHHHhCccc---cccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCC
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVIYDEHKDE---IGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIG   95 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g   95 (396)
                      .+++|.||||+||+.|+.+++++|++. +++   ++.+ |..|.||||+|+..|+.+++++|++.|  +++  +.+|.+|
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~i--~~~d~~g   78 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAG--AGV--LVAERGG   78 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CCS--SCCCTTS
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCc-CCCCCCccchHHhhccccccccccccc--ccc--ccccccc
Confidence            357789999999999999999999975 554   5556 788999999999999999999999988  776  8899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCccccCCC--------CCCCcHHHHHHh---cCCHHHHHHHH-hhcc-cCCCCcc
Q 037504           96 CTALFYAAASGSVELVKATMEGNEDITMVPQDD--------KDRMLPIVGAAS---LGHTEVVEFLY-RETK-NSLKDDD  162 (396)
Q Consensus        96 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d--------~~g~tpLh~A~~---~~~~~~v~~Ll-~~~~-~~~~~~~  162 (396)
                      .||||+|+..++.+++++|++.+..... ...+        ....+.+..+..   .........+. ..+. .+.++.+
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~  157 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPR-DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCC-CC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhc-ccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccccc
Confidence            9999999999999999999987664221 0000        000011111111   11111111111 1111 2223344


Q ss_pred             hhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCC
Q 037504          163 CIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGH  242 (396)
Q Consensus       163 g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~  242 (396)
                      |             .||||+|+..+                           ..++++.+++.    .....+..+..|.
T Consensus       158 g-------------~TpLh~A~~~~---------------------------~~~~v~~Ll~~----~~~~~~~~~~~g~  193 (255)
T d1oy3d_         158 G-------------HTPLHVAVIHK---------------------------DAEMVRLLRDA----GADLNKPEPTCGR  193 (255)
T ss_dssp             S-------------CCHHHHHHHTT---------------------------CHHHHHHHHHH----TCCTTCCCTTTCC
T ss_pred             C-------------ccccccccccc---------------------------ccccccchhcc----ccccccccccccc
Confidence            4             89999999988                           36777766653    3333344578899


Q ss_pred             cHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          243 TIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       243 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ||||+|++.|+.+++++|+++|++    +|.+|..|+||||+|+..++.+++++|
T Consensus       194 TpL~~A~~~~~~~~v~~Ll~~gad----in~~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         194 TPLHLAVEAQAASVLELLLKAGAD----PTARMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999    899999999999999999999998887

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-36  Score=279.91  Aligned_cols=276  Identities=18%  Similarity=0.222  Sum_probs=213.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHH
Q 037504           24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA  103 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~  103 (396)
                      .||||+||..|+.++|+.|++. |++++.. |..|+||||+|+..|+.++|++|+++|  +++  +.+|..|.||||+|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~g--adi--~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNK--AKV--NAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHT--CCS--SCCCTTSCCHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCc--CCC--CCCCCCCCCHHHHHH
Confidence            4899999999999999999986 8999988 999999999999999999999999998  776  999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcc------------------------------ccCCCCCCCcHHHHHHhcCCHHHHHHHHhh
Q 037504          104 ASGSVELVKATMEGNEDITM------------------------------VPQDDKDRMLPIVGAASLGHTEVVEFLYRE  153 (396)
Q Consensus       104 ~~g~~~~v~~Ll~~g~~~~~------------------------------~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~  153 (396)
                      ..|+.+++++|+..+++...                              ....+..+.++++.|+..++.+++++|+++
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999987765321                              233456789999999999999999999999


Q ss_pred             cc-cCCCCcchhHHHHHHhhccch--------------------hhHHHHHHhcCCCCCCCCCcchhhhhhhccch----
Q 037504          154 TK-NSLKDDDCIELLVKLIETDSY--------------------ETALHVLARKNLTSSNQNPRGIFQRYFNLGAK----  208 (396)
Q Consensus       154 ~~-~~~~~~~g~~~l~~~~~~~~~--------------------~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~----  208 (396)
                      +. .+..+.+|.++|+.++..+..                    .||+|++......       .....+......    
T Consensus       155 ~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~l~~~~~~~~~~  227 (408)
T d1n11a_         155 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV-------EVARSLLQYGGSANAE  227 (408)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH-------HHHHHHHHTTCCTTCC
T ss_pred             CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchh-------hhhhhhhhcccccccc
Confidence            88 666777887777766554332                    4555555544321       000000000000    


Q ss_pred             -----hhhh----HHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCC
Q 037504          209 -----AVEN----ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGN  279 (396)
Q Consensus       209 -----~~~~----~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~  279 (396)
                           ++.+    ....++++.+     ...+...+..+..|.||||.|++.++.+++++|+++|++    ++..+..+.
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~----~~~~~~~~~  298 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALL-----LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGY  298 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHH-----HTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCC
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhh-----hccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc----ccccccccc
Confidence                 0001    1112333322     345666777888888999999999989999999988888    778888888


Q ss_pred             chhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          280 NILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       280 TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                      ||||.++..++.++++.+                   +..|++++.+|.+|+||||+|++.
T Consensus       299 t~L~~~~~~~~~~~~~~l-------------------l~~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         299 TPLHVASHYGNIKLVKFL-------------------LQHQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             CHHHHHHHSSCSHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccchhhcccCcceeeeee-------------------ccccccccccCCCCCCHHHHHHHc
Confidence            999999888887766655                   557899999999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-37  Score=268.70  Aligned_cols=229  Identities=19%  Similarity=0.146  Sum_probs=169.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHHhhhcccc-hhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCc
Q 037504           55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLD-LAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRML  133 (396)
Q Consensus        55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t  133 (396)
                      +++|+||||+||+.|+.+++++|++.|  ++.. ++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|.|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~--a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---i~~~d~~g~t   80 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGHT   80 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHH--TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTSCC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcC--CCcccccCcCCCCCCccchHHhhccccccccccccccc---ccccccccch
Confidence            899999999999999999999999998  5432 488999999999999999999999999999999   5566779999


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhH
Q 037504          134 PIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENE  213 (396)
Q Consensus       134 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      |||+|+..++.+++++|++.......+...  .+..........+.+..+....                          
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------------------------  132 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASD--TYLTQSQDCTPDTSHAPAAVDS--------------------------  132 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccch--hhhhHHhhhcccchHHHHHHHh--------------------------
Confidence            999999999999999999876521111110  0000000000000000000000                          


Q ss_pred             HHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCc
Q 037504          214 RALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNR  293 (396)
Q Consensus       214 ~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  293 (396)
                        ...............+..++.+|.+|+||||+|+++++.+++++|++.+++.   .+.++..|.||||+|++.++.++
T Consensus       133 --~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~TpL~~A~~~~~~~~  207 (255)
T d1oy3d_         133 --QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL---NKPEPTCGRTPLHLAVEAQAASV  207 (255)
T ss_dssp             -------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             --hcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccc---cccccccccccccccccccHHHH
Confidence              0000011111123345567889999999999999999999999999999983   23467899999999999999998


Q ss_pred             cccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHH
Q 037504          294 LNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKE  340 (396)
Q Consensus       294 ~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~  340 (396)
                      +++|                   +.+|++++.+|+.|+|||++|...
T Consensus       208 v~~L-------------------l~~gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         208 LELL-------------------LKAGADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             HHHH-------------------HHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred             HHHH-------------------HHCCCCCCCCCCCCCCHHHHHHHC
Confidence            8887                   668999999999999999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-36  Score=270.53  Aligned_cols=252  Identities=19%  Similarity=0.134  Sum_probs=194.7

Q ss_pred             CCCCccccccccCCCcccccccchHHHHHHHcCCHHHHHHHHHh-------CccccccccCCCCchHHHHHHHcCCHHHH
Q 037504            2 AHSAPLELHVYSNPPVEEIRTRRLKLYRVALNGDWARAKVIYDE-------HKDEIGDVITRLGDTALHVAAAANRIDFV   74 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~-------~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v   74 (396)
                      |+.++.+.+...+.+......|+||||+||..|+.++|+.|+..       .|+++|.+ |.+|+||||+|+..|+.++|
T Consensus        12 ~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-d~~G~TpLh~A~~~g~~~iv   90 (277)
T d2fo1e1          12 GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLV   90 (277)
T ss_dssp             SSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-CCCCCeeecccccccccccc
Confidence            56677788888877766666799999999999999888777532       47888888 89999999999999999999


Q ss_pred             HHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHH---HHHHHH
Q 037504           75 KKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE---VVEFLY  151 (396)
Q Consensus        75 ~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~---~v~~Ll  151 (396)
                      ++|+++|  +++  +.+|.+|.||||+|+..++.++++.+...+.....+...+..+.++.+.+...+..+   .+..+.
T Consensus        91 ~~Ll~~G--ad~--n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
T d2fo1e1          91 AYLMKAG--ADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV  166 (277)
T ss_dssp             HHHHHTT--CCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             ccccccc--ccc--ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccc
Confidence            9999988  776  888999999999999999999999888765433335566778889999988877544   333343


Q ss_pred             hhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCC
Q 037504          152 RETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYP  231 (396)
Q Consensus       152 ~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~  231 (396)
                      +...........    ..-.....+.||||+++..+                           ..++++.++    ...+
T Consensus       167 ~~~~~~~~~~~~----~~~~~~~~g~t~L~~~~~~~---------------------------~~~~~~~~l----~~~~  211 (277)
T d2fo1e1         167 EKGAKVDYDGAA----RKDSEKYKGRTALHYAAQVS---------------------------NMPIVKYLV----GEKG  211 (277)
T ss_dssp             HHTCCSSCCSGG----GTSSSSCCCCCTHHHHHSSC---------------------------CHHHHHHHH----HHSC
T ss_pred             cccccccccccc----cccccccCCCCccccccccc---------------------------ccccccccc----cccc
Confidence            333211000000    00001123389999999887                           234444333    4578


Q ss_pred             cccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          232 DLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       232 ~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ..++.+|..|+||||+|++.|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.+++++|
T Consensus       212 ~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad----in~~d~~G~T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            88889999999999999999999999999999999    899999999999999999999988876

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=256.06  Aligned_cols=216  Identities=20%  Similarity=0.191  Sum_probs=190.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG  137 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~  137 (396)
                      +++.|+.+|..|+.+.|+.+++.. +..  ++.+|..|+||||+|+..|+.+++++|++.+.+   ....+..+.++++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~--~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~---~~~~~~~~~~~~~~   76 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI   76 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGG--GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTCCCHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCc--CcCcCCCCCCHHHHHHHhhhhcccccccccccc---cccccccccccccc
Confidence            468999999999999998888775 234  499999999999999999999999999999988   44455689999999


Q ss_pred             HHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHH
Q 037504          138 AASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERAL  216 (396)
Q Consensus       138 A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (396)
                      ++..++.+++++|++.++ .+..+.+|             .||||+|+..+                           ..
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~~~~d~~g-------------~tpL~~A~~~~---------------------------~~  116 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQVNAVNQNG-------------CTPLHYAASKN---------------------------RH  116 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTC-------------CCHHHHHHHHT---------------------------CH
T ss_pred             cccccccchhHHHhccCceeEeeCCCC-------------CchhhHHHHcC---------------------------CH
Confidence            999999999999999988 55566677             89999999988                           35


Q ss_pred             HHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcccc
Q 037504          217 ELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNI  296 (396)
Q Consensus       217 ~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~  296 (396)
                      ++++.+++     .+.+++.+|.+|.||||+|+..++.+++++|++.|.+    ++.+|..|+||||+|+..|+.+++++
T Consensus       117 e~~~~Ll~-----~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~----i~~~d~~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         117 EIAVMLLE-----GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS----TNIQDTEGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHH-----CCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce----eeeccCCCCceeccccccCcHHHHHH
Confidence            77776654     5778999999999999999999999999999999999    89999999999999999999998888


Q ss_pred             ccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHhHHHHHh
Q 037504          297 VSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHEELKKK  347 (396)
Q Consensus       297 l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~  347 (396)
                      |                   +..|++++.+|++|+||||+|...+.+++++
T Consensus       188 L-------------------L~~Gad~~~~d~~g~tpl~~A~~~~~~i~~~  219 (223)
T d1uoha_         188 L-------------------VSQGASIYIENKEEKTPLQVAKGGLGLILKR  219 (223)
T ss_dssp             H-------------------HHTTCCSCCCCTTSCCHHHHCCTTHHHHHHH
T ss_pred             H-------------------HHCCCCCCCCCCCCCCHHHHHHCCCHHHHhc
Confidence            7                   6789999999999999999997766665553

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-35  Score=251.53  Aligned_cols=211  Identities=20%  Similarity=0.203  Sum_probs=181.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH
Q 037504           59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA  138 (396)
Q Consensus        59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A  138 (396)
                      +||||+||..|+.++|+.|++.. +..  ++.+|.+|+||||+|+..|+.+++++|+++|++++.....+..|.+|+|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~--~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSL--LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGG--TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCc--ccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccc
Confidence            58999999999999999999874 233  599999999999999999999999999999999877777888999999999


Q ss_pred             HhcCCHHHHHHHHhhcc-cCC--CCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHH
Q 037504          139 ASLGHTEVVEFLYRETK-NSL--KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERA  215 (396)
Q Consensus       139 ~~~~~~~~v~~Ll~~~~-~~~--~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      +..+..++++.++..+. ...  .+..+             .++++.++..+                           .
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~---------------------------~  117 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQG-------------VTCLHLAVGKK---------------------------W  117 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTS-------------CCHHHHHHHTT---------------------------C
T ss_pred             cccccccccccccccccccccccccccc-------------ccccccccccc---------------------------h
Confidence            99999999999988876 222  22333             78999998877                           2


Q ss_pred             HHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccc
Q 037504          216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLN  295 (396)
Q Consensus       216 ~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~  295 (396)
                      .++++.++     ..+...+..|..|+||||+|+..|+.+++++|++.+...   +|.+|.+|+||||+|+..|+.++++
T Consensus       118 ~~~~~~l~-----~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---in~~d~~g~TpLh~A~~~~~~~~v~  189 (229)
T d1ixva_         118 FEVSQFLI-----ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGHGDAAV  189 (229)
T ss_dssp             HHHHHHHH-----HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC---SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhh-----hhcccccccCCCCCCccchhhhccccccccccccccccc---ccccccccCCchhhhcccccHHHHH
Confidence            45555554     456778888999999999999999999999999987532   8899999999999999999988887


Q ss_pred             cccchhHhHHHHHHHHHHHhhhc-chhhhhhhcCCCCCchhhHHH
Q 037504          296 IVSVAALQLQRELLWFQEVKKVV-PRKFAEEKNNDGLTPGDLFIK  339 (396)
Q Consensus       296 ~l~~~~~~~~~~l~~~~~v~~l~-~~~~~~~~~~~g~tpl~~a~~  339 (396)
                      +|                   +. .|++++.+|++|+|||++|.+
T Consensus       190 ~L-------------------l~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         190 LL-------------------VEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HH-------------------HHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             HH-------------------HHhcCCCCCCcCCCCCCHHHHHhh
Confidence            76                   54 489999999999999999974

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2e-36  Score=268.96  Aligned_cols=258  Identities=17%  Similarity=0.114  Sum_probs=192.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhh----hcccchhcccCCCCcHH
Q 037504           24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMK----AENLDLAKRNRIGCTAL   99 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~~d~~~~d~~g~tpL   99 (396)
                      .||||+++..+..+.+.++|.+.+.+  ...+++|+||||+||..|+.++|++|+.+..    ...+|+|.+|.+|+|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT--TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC--cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            48999877776665555666554554  4424579999999999999999988876531    11234499999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc----cCCCCcchhHHHHHHhhccc
Q 037504          100 FYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK----NSLKDDDCIELLVKLIETDS  175 (396)
Q Consensus       100 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~----~~~~~~~g~~~l~~~~~~~~  175 (396)
                      |+|++.|+.+++++|+++|++   ++.+|..|.|||++|+..++.++++++.....    ....+..+            
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad---~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------  143 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG------------  143 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS------------
T ss_pred             ccccccccccccccccccccc---cccccccccccccchhhhcchhhhhhhhhccccccccccccccc------------
Confidence            999999999999999999999   55667799999999999999999999987654    22233333            


Q ss_pred             hhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHH---HhCCcccccccCCCCcHHHHHHHcC
Q 037504          176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFL---FKYPDLIWKFDENGHTIFHIAVSNR  252 (396)
Q Consensus       176 ~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll---~~~~~~i~~~d~~g~t~Lh~A~~~~  252 (396)
                       .++.+.+...+..                        .....+..+.+...   .......+..+..|+||||+++..+
T Consensus       144 -~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~  198 (277)
T d2fo1e1         144 -MTALMIVAHNEGR------------------------DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS  198 (277)
T ss_dssp             -CCHHHHHHHSCST------------------------THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC
T ss_pred             -chhHHHHHhcccc------------------------cccccccccccccccccccccccccccccCCCCccccccccc
Confidence             5666666554411                        11222222221100   1112234456778999999999999


Q ss_pred             cHHHHHHHH-hhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCC
Q 037504          253 MREIFKFIF-EISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGL  331 (396)
Q Consensus       253 ~~~~v~~Ll-~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~  331 (396)
                      +.+++++++ ..+.+    ++.+|..|+||||+|++.|+.+++++|                   +..|++++.+|..|+
T Consensus       199 ~~~~~~~~l~~~~~~----~~~~d~~g~tpL~~A~~~g~~~iv~~L-------------------l~~gadin~~d~~G~  255 (277)
T d2fo1e1         199 NMPIVKYLVGEKGSN----KDKQDEDGKTPIMLAAQEGRIEVVMYL-------------------IQQGASVEAVDATDH  255 (277)
T ss_dssp             CHHHHHHHHHHSCCC----TTCCCTTCCCHHHHHHHHTCHHHHHHH-------------------HHTTCCSSCCCSSSC
T ss_pred             ccccccccccccccc----ccccCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCcCCCCCcCCCCC
Confidence            999998765 55666    788999999999999999999988887                   668999999999999


Q ss_pred             CchhhHHHHh-HHHHH
Q 037504          332 TPGDLFIKEH-EELKK  346 (396)
Q Consensus       332 tpl~~a~~~~-~~~~~  346 (396)
                      |||++|.+.. .++++
T Consensus       256 T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         256 TARQLAQANNHHNIVD  271 (277)
T ss_dssp             CHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHcCCHHHHH
Confidence            9999998754 34443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=252.28  Aligned_cols=261  Identities=21%  Similarity=0.213  Sum_probs=206.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFY  101 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~  101 (396)
                      ++.|+||.|++.|+.++|+.||+. |++++.+.+..|+||||+|+..|+.+++++|++.+  ...  ...+..+.+|.++
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~--~~~--~~~~~~~~~~~~~   78 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADP--VLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTCCCHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccc--ccc--cccccccchhhHH
Confidence            568999999999999999999986 89999886778999999999999999999999998  665  7788899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHH
Q 037504          102 AAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETAL  180 (396)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L  180 (396)
                      |+..+..+....+++...+   ....+..+.|++++|+..++...++.++.... .........   ........+.|||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~t~L  152 (285)
T d1wdya_          79 AAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE---DQERLRKGGATAL  152 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH---HHHHTTCCCCCHH
T ss_pred             HhhcCCccccchhhhhccc---ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchh---hhhhhcccCchHH
Confidence            9999999999999998876   34456689999999999999999999988765 222222211   1112233457899


Q ss_pred             HHHHhcCCCCCCCCCcchhhhhhhc-cch-----------------hhhhHHHHHHHHHHHHHHHHhCCcccccccCCCC
Q 037504          181 HVLARKNLTSSNQNPRGIFQRYFNL-GAK-----------------AVENERALELVELLWENFLFKYPDLIWKFDENGH  242 (396)
Q Consensus       181 ~~a~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~  242 (396)
                      |+|+++++.       ++++.+.+. +..                 ........+++++|+     +.+.+++.+|..|.
T Consensus       153 ~~A~~~~~~-------~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li-----~~ga~~n~~~~~g~  220 (285)
T d1wdya_         153 MDAAEKGHV-------EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL-----DHGADVNVRGERGK  220 (285)
T ss_dssp             HHHHHHTCH-------HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH-----HTTCCSSCCCTTSC
T ss_pred             HHHHHcCCH-------HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHH-----HCCCCCCccCCCCC
Confidence            999888743       222222211 100                 000111233444443     45788999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhh-ccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHHhhhcchh
Q 037504          243 TIFHIAVSNRMREIFKFIFEI-SSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEVKKVVPRK  321 (396)
Q Consensus       243 t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~  321 (396)
                      ||||+|++.|+.+++++|++. |++    +|.+|.+|+||||+|++.|+.+++++|                   +..||
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~d----in~~d~~G~TpL~~A~~~~~~eiv~~L-------------------l~~GA  277 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELL-------------------CKRGA  277 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHHSS
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCC----CcCCCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCC
Confidence            999999999999999999974 888    899999999999999999999999888                   77999


Q ss_pred             hhhhhcC
Q 037504          322 FAEEKNN  328 (396)
Q Consensus       322 ~~~~~~~  328 (396)
                      ++|.+|.
T Consensus       278 d~n~~d~  284 (285)
T d1wdya_         278 STDCGDL  284 (285)
T ss_dssp             CSCCSSC
T ss_pred             CCCcccC
Confidence            9999884

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=235.91  Aligned_cols=220  Identities=17%  Similarity=0.162  Sum_probs=184.8

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHH---hCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCc
Q 037504           21 RTRRLKLYRVALNGDWARAKVIYD---EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCT   97 (396)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~t   97 (396)
                      ++|.||||+||..|+.++|+.|++   +.|++++.+ |..|+||||+|+..|+.+++++|++.+  ++.  +..+..|.+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~-d~~g~TpL~~A~~~~~~~iv~~Ll~~g--a~~--~~~~~~~~~   75 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAG--ASP--MALDRHGQT   75 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc-CCCCCccceehhccccccccccccccc--ccc--ccccccccc
Confidence            369999999999999999999886   468899988 999999999999999999999999998  766  888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCc-cccCCCCCCCcHHHHHHhcCCHHHHHHHHhhccc--CCCCcchhHHHHHHhhcc
Q 037504           98 ALFYAAASGSVELVKATMEGNEDIT-MVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN--SLKDDDCIELLVKLIETD  174 (396)
Q Consensus        98 pLh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~--~~~~~~g~~~l~~~~~~~  174 (396)
                      +++.|...++.++++.+........ ..........++|+.+.........+.|......  ......+           
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------  144 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG-----------  144 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTC-----------
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccch-----------
Confidence            9999999999999998877644321 1333455788999999999999999998877662  2233334           


Q ss_pred             chhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcH
Q 037504          175 SYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMR  254 (396)
Q Consensus       175 ~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~  254 (396)
                        .+||+.|+..+                           ...+++.++     ..+..++.+|..|+||||+|+.+|+.
T Consensus       145 --~~~l~~a~~~~---------------------------~~~~~~~~~-----~~~~~~~~~d~~g~t~L~~A~~~g~~  190 (228)
T d1k1aa_         145 --RSPLIHAVENN---------------------------SLSMVQLLL-----QHGANVNAQMYSGSSALHSASGRGLL  190 (228)
T ss_dssp             --CCHHHHHHHTT---------------------------CHHHHHHHH-----HTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred             --hhHHHHHHHhh---------------------------hhhhhhhhh-----hhccccccccccCcchHHHHHHcCCH
Confidence              79999999887                           234444443     35777889999999999999999999


Q ss_pred             HHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCcc
Q 037504          255 EIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRL  294 (396)
Q Consensus       255 ~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  294 (396)
                      +++++|+++|+|    +|.+|.+|+||||+|+++|+.++|
T Consensus       191 ~~v~~Ll~~Gad----~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         191 PLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHHTTCC----TTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHHHHCCCC----CCCCCCCCCCHHHHHHhCCCcccc
Confidence            999999999999    889999999999999999886654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-33  Score=239.20  Aligned_cols=189  Identities=16%  Similarity=0.122  Sum_probs=117.9

Q ss_pred             cchHHHHHHHcCCHHHHHHHHH---hCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYD---EHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL   99 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpL   99 (396)
                      |.||||+|+..|+.++++.|++   ..+.++|.+ |.+|+||||+|+..|+.+++++|++.|  +++  +.+|..|.|||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~-d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~--~~~d~~g~t~l   76 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAG--CDP--ELRDFRGNTPL   76 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCC--CCS--CCCCTTCCCHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccC-CCCCCcccccccccccccccccccccc--ccc--ccccccccccc
Confidence            5555555555555444333222   134455554 555555555555555555555555554  443  55555555555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcc---ccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccch
Q 037504          100 FYAAASGSVELVKATMEGNEDITM---VPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY  176 (396)
Q Consensus       100 h~A~~~g~~~~v~~Ll~~g~~~~~---~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~  176 (396)
                      |+|+..++.++++.|++.+.....   .......|.||||.|+..++.+++++|+..+.                     
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~---------------------  135 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA---------------------  135 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC---------------------
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCc---------------------
Confidence            555555555555555554433211   11122345555555555555555555554433                     


Q ss_pred             hhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccc-cCCCCcHHHHHHHcCcHH
Q 037504          177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF-DENGHTIFHIAVSNRMRE  255 (396)
Q Consensus       177 ~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~-d~~g~t~Lh~A~~~~~~~  255 (396)
                                                                              .++.. +.+|+||||+|++.|+.+
T Consensus       136 --------------------------------------------------------~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_         136 --------------------------------------------------------DVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             --------------------------------------------------------CTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             --------------------------------------------------------ccccccccCCCCccccccccccHH
Confidence                                                                    23333 467999999999999999


Q ss_pred             HHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          256 IFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       256 ~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      ++++|+++|+|    ++.+|.+|+||||+|++.++.+++++|
T Consensus       160 ~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         160 LVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             HHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999    899999999999999999998877765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=228.31  Aligned_cols=215  Identities=20%  Similarity=0.171  Sum_probs=174.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHH
Q 037504           57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIV  136 (396)
Q Consensus        57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh  136 (396)
                      +|+||||+||..|+.++|+.|++.......+++.+|.+|+||||+|+..|+.+++++|+++|++   .+..+..|.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc---ccccccccccccc
Confidence            6999999999999999999999754333444599999999999999999999999999999998   4455668999999


Q ss_pred             HHHhcCCHHHHHHHHhhcccC-----CCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhh
Q 037504          137 GAASLGHTEVVEFLYRETKNS-----LKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVE  211 (396)
Q Consensus       137 ~A~~~~~~~~v~~Ll~~~~~~-----~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (396)
                      .|...++.++++.+.......     ......             .++|+.+....                        
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~------------------------  121 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDG-------------LTALHVAVNTE------------------------  121 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS-------------CCHHHHHHHHT------------------------
T ss_pred             cccccccccchhhhhhcccccccccccccccc-------------ccccccccccc------------------------
Confidence            999999999999887765411     111222             56777766544                        


Q ss_pred             hHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCC
Q 037504          212 NERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPL  291 (396)
Q Consensus       212 ~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~  291 (396)
                         .......+    ...........+..|.+|||.|+..+...+++.++++|.+    ++.+|..|+||||+|+..|+.
T Consensus       122 ---~~~~~~~l----~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~d~~g~t~L~~A~~~g~~  190 (228)
T d1k1aa_         122 ---CQETVQLL----LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGRGLL  190 (228)
T ss_dssp             ---CHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCH
T ss_pred             ---cchhhhhh----hccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc----cccccccCcchHHHHHHcCCH
Confidence               12222222    2334444555678899999999999999999999999998    889999999999999999999


Q ss_pred             CccccccchhHhHHHHHHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHh
Q 037504          292 NRLNIVSVAALQLQRELLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEH  341 (396)
Q Consensus       292 ~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~  341 (396)
                      +++++|                   +..|++++.+|.+|+|||++|.+..
T Consensus       191 ~~v~~L-------------------l~~Gad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         191 PLVRTL-------------------VRSGADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHH-------------------HHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHH-------------------HHCCCCCCCCCCCCCCHHHHHHhCC
Confidence            988887                   6689999999999999999997543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=6.9e-31  Score=223.10  Aligned_cols=206  Identities=20%  Similarity=0.184  Sum_probs=176.7

Q ss_pred             HHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 037504           36 WARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM  115 (396)
Q Consensus        36 ~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  115 (396)
                      .++|+.||+. |++++...|.+|.||||+||..|+.+++++|++.|  +++  +.++..+.++++.++..++........
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAG--ADA--NSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc--ccc--ccccccccccccccccccccccccccc
Confidence            4789999986 99998865899999999999999999999999998  777  999999999999999999998887777


Q ss_pred             hcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCC
Q 037504          116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQN  194 (396)
Q Consensus       116 ~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~  194 (396)
                      ......  .......|.++.+.+.........+.|...+. .+..+..|             .|||++++..+       
T Consensus        77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~-------------~t~l~~~~~~~-------  134 (209)
T d1ot8a_          77 RNRATN--LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG-------------KTALHWAAAVN-------  134 (209)
T ss_dssp             TCTTCC--TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTS-------------CBHHHHHHHTT-------
T ss_pred             cccccc--cccccccccccccccccccchhhhhhhhhhcccccccCCCC-------------CCcchhhcccC-------
Confidence            765543  33344578999999999999999999999887 44566666             89999999887       


Q ss_pred             CcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccc
Q 037504          195 PRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSK  274 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~  274 (396)
                                          ..+++..++     ..+..++..|..|.||||+|+.+|+.+++++|+++|++    ++.+
T Consensus       135 --------------------~~~~~~~l~-----~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----~n~~  185 (209)
T d1ot8a_         135 --------------------NTEAVNILL-----MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN----REIT  185 (209)
T ss_dssp             --------------------CHHHHHHHH-----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCC
T ss_pred             --------------------cceeeeeec-----cccccccccccccccccchhccccHHHHHHHHHHCCCC----CCCc
Confidence                                244444443     45677899999999999999999999999999999999    8899


Q ss_pred             cCCCCchhhhhhcCCCCCccccc
Q 037504          275 DKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       275 d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      |..|+||||+|+++|+.++|++|
T Consensus       186 d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         186 DHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999998888765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=7.4e-33  Score=253.46  Aligned_cols=238  Identities=12%  Similarity=0.064  Sum_probs=163.6

Q ss_pred             cccccchHHHHHHHcCCHHHHHHH--HHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhccc--CC
Q 037504           19 EIRTRRLKLYRVALNGDWARAKVI--YDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRN--RI   94 (396)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~l--l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d--~~   94 (396)
                      ++..|.||||+||+.|+.++++.+  |.+.+++++.+ |.+|+||||+||+.|+.++|++|++.|  +++  +..+  .+
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~-~~~g~taL~~Aa~~G~~~~v~~Ll~~g--~~~--~~~~~~~~  160 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELA--PTE--IMAMIQAE  160 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTT--HHHHHSHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHcC--CCc--cccccccC
Confidence            566899999999999999887763  44569999998 899999999999999999999999998  776  5554  56


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHH-hhc
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKL-IET  173 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~-~~~  173 (396)
                      |+||||+|+..|+.++|++|++.|++....+..+..+.||+|.|+.+|+.+++++|++.|+. .     ..+.+.+ ...
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~-~-----~~~~~~~~~~~  234 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-L-----AYAEIHEFEYG  234 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-H-----HHHHHCTTTTT
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC-c-----chHHHHHHHcC
Confidence            99999999999999999999999987543333334678888999999999999999998861 1     0000000 000


Q ss_pred             cchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccc-------cCCCCcHHH
Q 037504          174 DSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKF-------DENGHTIFH  246 (396)
Q Consensus       174 ~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~-------d~~g~t~Lh  246 (396)
                      ....++++.+...+                           ..+....+..   .......+..       ...+.++++
T Consensus       235 ~~~~~~~~~~~~~~---------------------------~~~~~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~~l~  284 (346)
T d2ajaa1         235 EKYVNPFIARHVNR---------------------------LKEMHDAFKL---SNPDGVFDLVTKSECLQGFYMLRNLI  284 (346)
T ss_dssp             TTTHHHHHHHHHHH---------------------------HHHHHTTTTT---TSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             cHhhhHHHHHhhcc---------------------------chHHHHHHHH---hcccccHhHHhcccccccchhhhHHH
Confidence            01122222222111                           0000000000   0000001111       112457899


Q ss_pred             HHHHcCcHHHHHHHHhhcccccc-ccccccCCCCchhhhhhcCCCCCccccc
Q 037504          247 IAVSNRMREIFKFIFEISSVADL-LFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       247 ~A~~~~~~~~v~~Ll~~g~~~~~-~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      .|+..+..+++++|++.+..... ..+..+.+|+||||+|++.|+.+++++|
T Consensus       285 ~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL  336 (346)
T ss_dssp             HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             HHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHH
Confidence            99999999999999998875432 1334556899999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=229.06  Aligned_cols=168  Identities=14%  Similarity=0.105  Sum_probs=145.1

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhh--cccchhcccCCC
Q 037504           18 EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA--ENLDLAKRNRIG   95 (396)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~d~~~~d~~g   95 (396)
                      ..+..|+||||+|+..|+.+++++|++. |++++.+ |..|.||||+|+..|+.++++.|++.+..  ...........|
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~-d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCC-CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             cCCCCCCccccccccccccccccccccc-ccccccc-ccccccccccccccccccccchhhhhccccccccccccccccc
Confidence            3688999999999999999999999875 8999988 99999999999999999999999997621  111234566778


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccc
Q 037504           96 CTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDS  175 (396)
Q Consensus        96 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~  175 (396)
                      .||||+|+..++.+++++|+..|+.++...  +.+|.||||+|+..|+.+++++|+++|+                    
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--~~~G~T~L~~A~~~g~~~~v~~Ll~~ga--------------------  169 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNAQE--PCNGRTALHLAVDLQNPDLVSLLLKCGA--------------------  169 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHTTTC--------------------
T ss_pred             chhhhHHhhcCChhheeeecccCccccccc--ccCCCCccccccccccHHHHHHHHhcCC--------------------
Confidence            999999999999999999999999854333  3479999999999999999999997654                    


Q ss_pred             hhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHH
Q 037504          176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMRE  255 (396)
Q Consensus       176 ~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~  255 (396)
                                                                               +++.+|.+|+||||+|+.+++.+
T Consensus       170 ---------------------------------------------------------d~~~~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         170 ---------------------------------------------------------DVNRVTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             ---------------------------------------------------------CSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             ---------------------------------------------------------cccccCCCCCCHHHHHHHCCCHH
Confidence                                                                     46678889999999999999999


Q ss_pred             HHHHHHhhccc
Q 037504          256 IFKFIFEISSV  266 (396)
Q Consensus       256 ~v~~Ll~~g~~  266 (396)
                      ++++|++.+.+
T Consensus       193 ~~~~l~~~~~~  203 (221)
T d1iknd_         193 IQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHTTSCG
T ss_pred             HHHHHHHcCCc
Confidence            99999988766

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.7e-30  Score=229.31  Aligned_cols=228  Identities=17%  Similarity=0.160  Sum_probs=176.7

Q ss_pred             CCCCccccccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKK   80 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   80 (396)
                      ||.+++++|+..+++.. .+..|.||||+|+..|+.++|+.|++. +.+.... +..+.|||+.|+..|+.++++.|++.
T Consensus        51 G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~-~~~~~~~L~~a~~~~~~~~~~~l~~~  128 (291)
T d1s70b_          51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQP-DNEGWIPLHAAASCGYLDIAEYLISQ  128 (291)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccc-ccccccc-cccccccccccccccccchhhccccc
Confidence            67888999999887654 688999999999999999999999986 7777776 88999999999999999999999999


Q ss_pred             hhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc-cCCC
Q 037504           81 MKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK-NSLK  159 (396)
Q Consensus        81 ~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~-~~~~  159 (396)
                      +  ...  +..|..|.+|+++|+..++.++++.++......  +...       ...............+..... ....
T Consensus       129 ~--~~~--~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         129 G--AHV--GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD--IEAA-------RKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             T--CCT--TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCC--HHHH-------HHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             C--ccc--ccccccCccccccccccccchhccccccccccc--cccc-------cccccccccccchhhhcccccccccc
Confidence            8  666  889999999999999999999999998654321  1110       011111111122222222222 2223


Q ss_pred             CcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccC
Q 037504          160 DDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDE  239 (396)
Q Consensus       160 ~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~  239 (396)
                      +..|             .||||+|+..+                           ..++++.++     ..+.+++.++.
T Consensus       196 ~~~g-------------~t~L~~a~~~~---------------------------~~~~~~~Ll-----~~g~din~~~~  230 (291)
T d1s70b_         196 AKSG-------------GTALHVAAAKG---------------------------YTEVLKLLI-----QARYDVNIKDY  230 (291)
T ss_dssp             TTTC-------------CCHHHHHHHHT---------------------------CHHHHHHHH-----TTTCCTTCCCT
T ss_pred             cCCC-------------CChhhHHHHcC---------------------------Chhhhcccc-----cceeccccccc
Confidence            3344             78889888887                           356665554     35778999999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          240 NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       240 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                      +|+||||+|++.|+.++|++|+++|++    ++.+|..|+||||+|++    +++.+|
T Consensus       231 ~g~TpL~~A~~~g~~~iv~lLl~~Gad----v~~~d~~G~TaL~~A~e----~~~~~L  280 (291)
T d1s70b_         231 DGWTPLHAAAHWGKEEACRILVENLCD----MEAVNKVGQTAFDVADE----DILGYL  280 (291)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTTTSCCS----GGGHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH----HHHHHH
Confidence            999999999999999999999999999    88999999999999975    455554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=198.71  Aligned_cols=154  Identities=23%  Similarity=0.319  Sum_probs=135.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      ++||+||..|+.++|+.|++. |++++.+ |.+|.||||+|+ .|+.+++++|++.+  +++  +.++..|.+||+.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~~~--a~~--~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLLRG--ANP--DLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCcc-CCcccccccccc-cccccccccccccc--ccc--ccccccCccccccccc
Confidence            789999999999999999975 8899888 899999999875 78999999999987  666  8889999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHH
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLA  184 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~  184 (396)
                      .++.++++.|++.+.+   ++..|..|.+|||+|+..++.+++++|+++++                             
T Consensus        76 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~-----------------------------  123 (156)
T d1ihba_          76 AGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA-----------------------------  123 (156)
T ss_dssp             HTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC-----------------------------
T ss_pred             cccccccccccccccc---cccccccccccccccccccccccccccccccc-----------------------------
Confidence            9999999999999888   55567789999999999999999999887654                             


Q ss_pred             hcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhc
Q 037504          185 RKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEIS  264 (396)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  264 (396)
                                                                     .+++.+|.+|+||||+|++.++.+++++|+++|
T Consensus       124 -----------------------------------------------~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         124 -----------------------------------------------SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             -----------------------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             -----------------------------------------------ccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                                                           234567888999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-27  Score=213.12  Aligned_cols=234  Identities=20%  Similarity=0.203  Sum_probs=163.2

Q ss_pred             CCCCccccccccCCCc--ccccccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 037504            2 AHSAPLELHVYSNPPV--EEIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVK   79 (396)
Q Consensus         2 ~h~~~~~~~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~   79 (396)
                      ||.+++++|+..+++.  ..+..|.||||+|+..|+.++++.|++. +...... +..+.+|.+.|+..+..+....+++
T Consensus        16 ~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   93 (285)
T d1wdya_          16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc-ccccccc-ccccchhhHHHhhcCCccccchhhh
Confidence            6778899999988765  3566799999999999999999988875 5555554 5667777777777777777777776


Q ss_pred             HhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc-------cCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q 037504           80 KMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV-------PQDDKDRMLPIVGAASLGHTEVVEFLYR  152 (396)
Q Consensus        80 ~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~-------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~  152 (396)
                      ..  .+.  ...+..|.|++++|+..++...++.++....++...       ...+..|.||||+|+..|+.+++++|++
T Consensus        94 ~~--~~~--~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  169 (285)
T d1wdya_          94 KG--ADV--NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             TT--CCT--TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hc--ccc--cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHh
Confidence            64  333  455666667777777777776666666655543211       1112346677777777777777777765


Q ss_pred             hcc--cCCCCcchhHHHHH----------------Hhh--------ccchhhHHHHHHhcCCCCCCCCCcchhhhhhhcc
Q 037504          153 ETK--NSLKDDDCIELLVK----------------LIE--------TDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG  206 (396)
Q Consensus       153 ~~~--~~~~~~~g~~~l~~----------------~~~--------~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~  206 (396)
                      ...  .+..+..|.++...                .++        +..+.||||+|++.+                   
T Consensus       170 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~-------------------  230 (285)
T d1wdya_         170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK-------------------  230 (285)
T ss_dssp             TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT-------------------
T ss_pred             ccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcC-------------------
Confidence            432  22222222221111                111        223489999999988                   


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccC
Q 037504          207 AKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK  276 (396)
Q Consensus       207 ~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~  276 (396)
                              ..+++++++    ..++.+++.+|.+|+||||+|+++|+.+++++|+++||+    +|++|.
T Consensus       231 --------~~~~v~~lL----~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~  284 (285)
T d1wdya_         231 --------HLGLVQRLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGDL  284 (285)
T ss_dssp             --------CHHHHHHHH----HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred             --------cHHHHHHHH----HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence                    356666655    457889999999999999999999999999999999999    788773

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=195.55  Aligned_cols=152  Identities=24%  Similarity=0.294  Sum_probs=136.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      ..|+.||..|+.++|+.||++.+.+++.. |..|+||||+|+ .|+.+++++|++.+  .++  +..+..|.+||++++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~~~--~~~--~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQG--ASP--NVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHHTT--CCT--TCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-cccccccccccccc--ccc--cccccccccccccccc
Confidence            45999999999999999999889999988 999999999987 58899999999987  666  8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHH
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLA  184 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~  184 (396)
                      .++.+++++++++|++   ++.+|..|.||||+|+..|+.+++++|+. ++                             
T Consensus        78 ~~~~~~~~~~l~~~~~---~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~-----------------------------  124 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ES-----------------------------  124 (156)
T ss_dssp             TTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-TS-----------------------------
T ss_pred             cccccccccccccccc---cccccCCCCeeeccccccccccccccccc-cc-----------------------------
Confidence            9999999999999998   55567799999999999999999998873 22                             


Q ss_pred             hcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhh
Q 037504          185 RKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI  263 (396)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  263 (396)
                                                                      +++.+|.+|+||||+|+++|+.+++++|+++
T Consensus       125 ------------------------------------------------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         125 ------------------------------------------------DLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ------------------------------------------------CTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ------------------------------------------------cccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                                                            3566788999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.3e-28  Score=208.95  Aligned_cols=197  Identities=19%  Similarity=0.207  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHhhhcccchhc-ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHH
Q 037504           71 IDFVKKLVKKMKAENLDLAK-RNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEF  149 (396)
Q Consensus        71 ~~~v~~Ll~~~~~~~~d~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~  149 (396)
                      .|+|++|+++|  +++  +. .|.+|.||||+||+.|+.+++++|++.|++   ++.++..+.++++.++..++......
T Consensus         2 ~~~v~~Ll~~g--~di--n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~---~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLAQG--AEL--NATMDKTGETSLHLAARFARADAAKRLLDAGAD---ANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHHH--HHH--HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCC--CCc--CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc---cccccccccccccccccccccccccc
Confidence            58999999999  776  87 589999999999999999999999999999   55667799999999999999887777


Q ss_pred             HHhhccc--CCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 037504          150 LYRETKN--SLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFL  227 (396)
Q Consensus       150 Ll~~~~~--~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll  227 (396)
                      .......  ......+             .++.+.+.....                           ....+     .+
T Consensus        75 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---------------------------~~~~~-----~L  109 (209)
T d1ot8a_          75 LLRNRATNLNARMHDG-------------TTPLILAARLAI---------------------------EGMVE-----DL  109 (209)
T ss_dssp             HHTCTTCCTTCCCTTC-------------CCHHHHHHHTTC---------------------------TTHHH-----HH
T ss_pred             cccccccccccccccc-------------cccccccccccc---------------------------hhhhh-----hh
Confidence            6665441  1222223             444454444331                           11122     22


Q ss_pred             HhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHH
Q 037504          228 FKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRE  307 (396)
Q Consensus       228 ~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~  307 (396)
                      ...+.+++.++..|+||||+++.++..++++.+++.+.+    ++.+|..|+||||+|+..|+.+++++|          
T Consensus       110 ~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~----~~~~d~~g~TpL~~A~~~g~~~~v~~L----------  175 (209)
T d1ot8a_         110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN----RDAQDDKDETPLFLAAREGSYEASKAL----------  175 (209)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH----------
T ss_pred             hhhcccccccCCCCCCcchhhcccCcceeeeeecccccc----ccccccccccccchhccccHHHHHHHH----------
Confidence            456778899999999999999999999999999999999    889999999999999999999988887          


Q ss_pred             HHHHHHHhhhcchhhhhhhcCCCCCchhhHHHHhH
Q 037504          308 LLWFQEVKKVVPRKFAEEKNNDGLTPGDLFIKEHE  342 (396)
Q Consensus       308 l~~~~~v~~l~~~~~~~~~~~~g~tpl~~a~~~~~  342 (396)
                               +..|++++.+|..|+|||++|++...
T Consensus       176 ---------l~~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         176 ---------LDNFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             ---------HHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ---------HHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence                     67899999999999999999987543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.1e-27  Score=192.80  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=101.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH
Q 037504           59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA  138 (396)
Q Consensus        59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A  138 (396)
                      .||||.||+.|+.++|++||++|  +++  + .|..|+||||+|+..++.++++.++......   ...+..+.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g--a~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG--APF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT--CCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC--CCc--c-cccCCCccccccccccccccccccccccccc---cccccccccccccc
Confidence            36777777777777777777766  444  3 4666777777777777777777776666552   23344566677777


Q ss_pred             HhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHH
Q 037504          139 ASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL  218 (396)
Q Consensus       139 ~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (396)
                      +...+.+++++++..+.                                                               
T Consensus        75 ~~~~~~~~~~~l~~~~~---------------------------------------------------------------   91 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGA---------------------------------------------------------------   91 (153)
T ss_dssp             HHHTCHHHHHHHHTTTC---------------------------------------------------------------
T ss_pred             cccccceeeecccccCC---------------------------------------------------------------
Confidence            76666666666654432                                                               


Q ss_pred             HHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       219 ~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                                    +++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|+.|.||||+|+..|+.+++++|
T Consensus        92 --------------~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad----~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          92 --------------DVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             --------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --------------ccccccccCchHHHhhhhcchhheeeeccccccC----CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                          2344566777778887777777778877777777    677777788888888877777766543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.5e-28  Score=194.10  Aligned_cols=150  Identities=18%  Similarity=0.241  Sum_probs=131.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504           60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus        60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      +|||+||..|+.++|++|++.|  +++  +.+|.+|.||||+|+ .|+.+++++|+++|++   ++..+..|.+|++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g--~d~--n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~---~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN--VNV--NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC--CCT--TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCc--CccCCcccccccccc-cccccccccccccccc---cccccccCcccccccc
Confidence            8999999999999999999988  666  889999999999886 6899999999999998   5556678999999999


Q ss_pred             hcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHH
Q 037504          140 SLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELV  219 (396)
Q Consensus       140 ~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (396)
                      ..++.+.+++|+..+.                                                                
T Consensus        75 ~~~~~~~~~~l~~~~~----------------------------------------------------------------   90 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQA----------------------------------------------------------------   90 (156)
T ss_dssp             HHTCHHHHHHHHHTTC----------------------------------------------------------------
T ss_pred             cccccccccccccccc----------------------------------------------------------------
Confidence            9999998888876543                                                                


Q ss_pred             HHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          220 ELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       220 ~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                                   .++..|..|.+|||+|+..++.+++++|+++++..   ++.+|..|+||||+|++.++.+++++|
T Consensus        91 -------------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          91 -------------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN---VGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             -------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -------------ccccccccccccccccccccccccccccccccccc---ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                         24566788999999999999999999999998731   789999999999999999999988876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.6e-27  Score=212.46  Aligned_cols=184  Identities=14%  Similarity=0.133  Sum_probs=120.1

Q ss_pred             ccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCH-------HHHHHHHhcCC
Q 037504           47 KDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSV-------ELVKATMEGNE  119 (396)
Q Consensus        47 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~-------~~v~~Ll~~g~  119 (396)
                      +.++|...|.+|+||||+||..|+.++|++|++.|  +++  +.+|..|+||||.|+..++.       +++++|.+.  
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~--~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~--  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNR--LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC--  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCT--TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG--
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC--CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh--
Confidence            45666555888999999999999999999999988  776  88999999999999986652       455555432  


Q ss_pred             CCccccCCCCCCCcHHHHHHhcCC----HHHHH--------HHHhhcccCC--CCcchhHHHHHHhhccchhhHHHHHHh
Q 037504          120 DITMVPQDDKDRMLPIVGAASLGH----TEVVE--------FLYRETKNSL--KDDDCIELLVKLIETDSYETALHVLAR  185 (396)
Q Consensus       120 ~~~~~~~~d~~g~tpLh~A~~~~~----~~~v~--------~Ll~~~~~~~--~~~~g~~~l~~~~~~~~~~t~L~~a~~  185 (396)
                          +...|..|+||||+++..+.    ..+++        +++..+....  ....+             .++++.+..
T Consensus       170 ----~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~  232 (301)
T d1sw6a_         170 ----LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK-------------ESKPNDKNG  232 (301)
T ss_dssp             ----GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------------------
T ss_pred             ----hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccc-------------cchhHHHHh
Confidence                33346688999998876443    33333        3333332111  11111             223332222


Q ss_pred             cCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcc
Q 037504          186 KNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS  265 (396)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  265 (396)
                      ....                      .......+..++       ...+|.+|.+|+||||+|+++|+.++|++|+++|+
T Consensus       233 ~~~~----------------------~~~~~~~~~~~~-------~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA  283 (301)
T d1sw6a_         233 ERKD----------------------SILENLDLKWII-------ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  283 (301)
T ss_dssp             ---C----------------------HHHHHCSHHHHH-------HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             cchH----------------------HHHHHHhhHHHH-------hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            2100                      000000011122       12378899999999999999999999999999999


Q ss_pred             ccccccccccCCCCchhhhhh
Q 037504          266 VADLLFDSKDKDGNNILHLAG  286 (396)
Q Consensus       266 ~~~~~~n~~d~~g~TpLh~A~  286 (396)
                      +    ++.+|+.|.||||+|+
T Consensus       284 d----~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         284 D----PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             C----TTCCCTTSCCGGGGTC
T ss_pred             C----CCCCCCCCCCHHHHcC
Confidence            9    8899999999999997

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.1e-26  Score=185.20  Aligned_cols=151  Identities=22%  Similarity=0.290  Sum_probs=134.0

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHH
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYA  102 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A  102 (396)
                      ..||||.||+.|+.++|+.||+. |++++ . |..|+||||+|+..++.++++.++...  ...  ...+..+.++++++
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~   74 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAG--VSR--DARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTT--CCT--TCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc-CCCcc-c-ccCCCcccccccccccccccccccccc--ccc--cccccccccccccc
Confidence            35999999999999999999987 77776 4 899999999999999999999999876  444  66777889999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHH
Q 037504          103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHV  182 (396)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~  182 (396)
                      +...+.++++++++++++   ...+|..|+||||+|+..|+.+++++|++.|+                           
T Consensus        75 ~~~~~~~~~~~l~~~~~~---~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga---------------------------  124 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA---------------------------  124 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---------------------------
T ss_pred             cccccceeeecccccCCc---cccccccCchHHHhhhhcchhheeeecccccc---------------------------
Confidence            999999999999999998   55668899999999999999999999987765                           


Q ss_pred             HHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHH
Q 037504          183 LARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFI  260 (396)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~L  260 (396)
                                                                        +++.+|.+|.||||+|+.+|+.+++++|
T Consensus       125 --------------------------------------------------d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         125 --------------------------------------------------DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             --------------------------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --------------------------------------------------CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                                                              3566788899999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-27  Score=189.76  Aligned_cols=150  Identities=22%  Similarity=0.244  Sum_probs=131.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH
Q 037504           59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA  138 (396)
Q Consensus        59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A  138 (396)
                      .+.||.||..|+.++|++|++.+ ..+  ++.+|..|+||||+|+. |+.+++++|++++.+   ++..+..|.+|++++
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-~~~--~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~~   75 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-LVH--PDALNRFGKTALQVMMF-GSTAIALELLKQGAS---PNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCC--TTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-CCC--CCccCCCCCcccccccc-ccccccccccccccc---ccccccccccccccc
Confidence            34599999999999999999874 244  49999999999999875 889999999999998   445566899999999


Q ss_pred             HhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHH
Q 037504          139 ASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL  218 (396)
Q Consensus       139 ~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (396)
                      +..++.++++++++.++                                                               
T Consensus        76 ~~~~~~~~~~~~l~~~~---------------------------------------------------------------   92 (156)
T d1bd8a_          76 ARTGFLDTLKVLVEHGA---------------------------------------------------------------   92 (156)
T ss_dssp             HHTTCHHHHHHHHHTTC---------------------------------------------------------------
T ss_pred             ccccccccccccccccc---------------------------------------------------------------
Confidence            99999999999887654                                                               


Q ss_pred             HHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhccccccccccccCCCCchhhhhhcCCCCCccccc
Q 037504          219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV  297 (396)
Q Consensus       219 ~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l  297 (396)
                                    +++.+|..|+||||+|++.|+.+++++|+ .|++    ++.+|.+|+||||+|++.|+.+++++|
T Consensus        93 --------------~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~----~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          93 --------------DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD----LHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             --------------CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC----TTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             --------------ccccccCCCCeeecccccccccccccccc-cccc----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                          35567888999999999999999999888 6788    889999999999999999999988876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.9e-27  Score=210.60  Aligned_cols=197  Identities=18%  Similarity=0.168  Sum_probs=125.5

Q ss_pred             cccchhcc-cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCH-------HHHHHHHhhcc
Q 037504           84 ENLDLAKR-NRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT-------EVVEFLYRETK  155 (396)
Q Consensus        84 ~~~d~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~-------~~v~~Ll~~~~  155 (396)
                      ..+|+|.. |.+|+||||+||..|+.++|++|+++|++   ++.+|..|+||||.|+..++.       ++++++...  
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~--  169 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC--  169 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG--
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh--
Confidence            44555765 89999999999999999999999999999   556778999999999987652       444444332  


Q ss_pred             cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 037504          156 NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIW  235 (396)
Q Consensus       156 ~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~  235 (396)
                      ....+..|             +||||+++..+.....                   .......++.++..+.........
T Consensus       170 ~~~~d~~g-------------~t~lh~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~~~  217 (301)
T d1sw6a_         170 LILEDSMN-------------RTILHHIIITSGMTGC-------------------SAAAKYYLDILMGWIVKKQNRPIQ  217 (301)
T ss_dssp             GGEECTTC-------------CCHHHHHHHHHTSTTC-------------------HHHHHHHHHHHHHHHHHGGGCCEE
T ss_pred             hhhccccc-------------CCHHHHHHHHhCcccc-------------------HHHHHHHHHHHHHHHHhcCCcchh
Confidence            23344455             7888887765422110                   000111122333334444455555


Q ss_pred             cccCCCCcHHHHHHHcCcHHHHHHHH-hhccccccccccccCCCCchhhhhhcCCCCCccccccchhHhHHHHHHHHHHH
Q 037504          236 KFDENGHTIFHIAVSNRMREIFKFIF-EISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIVSVAALQLQRELLWFQEV  314 (396)
Q Consensus       236 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll-~~g~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~v  314 (396)
                      .....+.++++.+........+..+. ....  ...+|.+|.+|+||||+|++.|+.+++++|                 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~in~~D~~G~TpLh~A~~~g~~~iv~~L-----------------  278 (301)
T d1sw6a_         218 SGTNEKESKPNDKNGERKDSILENLDLKWII--ANMLNAQDSNGDTCLNIAARLGNISIVDAL-----------------  278 (301)
T ss_dssp             EC----------------CHHHHHCSHHHHH--HHTTTCCCTTSCCHHHHHHHHCCHHHHHHH-----------------
T ss_pred             cccccccchhHHHHhcchHHHHHHHhhHHHH--hcCccCCCCCCCCHHHHHHHcCCHHHHHHH-----------------
Confidence            55667778888777665554444321 1111  112789999999999999999999999888                 


Q ss_pred             hhhcchhhhhhhcCCCCCchhhHH
Q 037504          315 KKVVPRKFAEEKNNDGLTPGDLFI  338 (396)
Q Consensus       315 ~~l~~~~~~~~~~~~g~tpl~~a~  338 (396)
                        +..|++++.+|+.|+|||++|+
T Consensus       279 --l~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         279 --LDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --HHTTCCTTCCCTTSCCGGGGTC
T ss_pred             --HHCCCCCCCCCCCCCCHHHHcC
Confidence              7789999999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1.3e-27  Score=218.32  Aligned_cols=226  Identities=10%  Similarity=0.016  Sum_probs=149.3

Q ss_pred             CCCCccc---cccccCCCcc-cccccchHHHHHHHcCCHHHHHHHHHhCcccccccc-CCCCchHHHHHHHcCCHHHHHH
Q 037504            2 AHSAPLE---LHVYSNPPVE-EIRTRRLKLYRVALNGDWARAKVIYDEHKDEIGDVI-TRLGDTALHVAAAANRIDFVKK   76 (396)
Q Consensus         2 ~h~~~~~---~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~   76 (396)
                      ||.++++   +|+..+++.. .+..|.||||+||+.|+.++|++|++. |++++... +.+|+||||+|+..|+.++|++
T Consensus       101 g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~  179 (346)
T d2ajaa1         101 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNR  179 (346)
T ss_dssp             CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHHHHHHhhHHHHHH
Confidence            5665554   4677776655 688999999999999999999999986 78777651 3569999999999999999999


Q ss_pred             HHHHhhhccc-chhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 037504           77 LVKKMKAENL-DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV----PQDDKDRMLPIVGAASLGHTEVVEFLY  151 (396)
Q Consensus        77 Ll~~~~~~~~-d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~----~~~d~~g~tpLh~A~~~~~~~~v~~Ll  151 (396)
                      |++.|  +.. +.+..+..|.||+|.|++.|+.++|++|++.|+++...    ......+.++++.+...+..++...+.
T Consensus       180 Ll~~~--~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (346)
T d2ajaa1         180 LCELA--PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK  257 (346)
T ss_dssp             HHHSC--GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHcC--CcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHH
Confidence            99987  332 23556667888999999999999999999998863210    011123334555544444443333332


Q ss_pred             hhcc---cCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 037504          152 RETK---NSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLF  228 (396)
Q Consensus       152 ~~~~---~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  228 (396)
                      ....   .++.+..+..      ......++++.++..+                           ..++++++++....
T Consensus       258 ~a~~~~~~~~~~~~~~~------~~~~~~~~l~~a~~~~---------------------------~ld~v~~Ll~~~~~  304 (346)
T d2ajaa1         258 LSNPDGVFDLVTKSECL------QGFYMLRNLIRRNDEV---------------------------LLDDIRFLLSIPGI  304 (346)
T ss_dssp             TTSSSSCCCCSSHHHHH------HHHHHHHHHHHHCCGG---------------------------GHHHHHHHHTSTTT
T ss_pred             HhcccccHhHHhccccc------ccchhhhHHHHHhcCC---------------------------hHHHHHHHHhCcCh
Confidence            2221   1111111111      1111257777777766                           46677766642111


Q ss_pred             hCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhh
Q 037504          229 KYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI  263 (396)
Q Consensus       229 ~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  263 (396)
                      ......+..+.+|+||||+|++.|+.++|++|++.
T Consensus       305 ~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         305 KALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             GGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            11112334456899999999999999999999975

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4e-26  Score=176.67  Aligned_cols=121  Identities=15%  Similarity=0.143  Sum_probs=110.3

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCC-cHHH
Q 037504           22 TRRLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGC-TALF  100 (396)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~-tpLh  100 (396)
                      .+.++||+|+..|+.++|+.|++. |++++.+ +..|.||||+|+ .|+.+++++|+++|  +++  +.+|..|. ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~g--a~~--~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHG--AEP--NCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTT--CCC--CCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc-CCccccc-cccccccccccc-cccccccccccccc--ccc--ccccccccccccc
Confidence            356899999999999999999975 8999988 999999999775 79999999999998  776  88888876 6999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q 037504          101 YAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR  152 (396)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~  152 (396)
                      +|++.|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|++
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999   55667899999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.7e-26  Score=175.68  Aligned_cols=122  Identities=26%  Similarity=0.264  Sum_probs=109.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHH
Q 037504           25 LKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAA  104 (396)
Q Consensus        25 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~  104 (396)
                      ++|+.|+..|+.++|+.|++. |++++.+ |.+|+||||+|+..|+.+++++|++.|  +++  +.+|.+|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~g--~~~--~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQFG--VNV--NAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHT--CCT--TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccc-ccccccccccccccccccccccccccc--ccc--ccccccCcccccccch
Confidence            789999999999999999975 8999988 999999999999999999999999998  776  9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHH--HhcCCHHHHHHHHhhc
Q 037504          105 SGSVELVKATMEGNEDITMVPQDDKDRMLPIVGA--ASLGHTEVVEFLYRET  154 (396)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A--~~~~~~~~v~~Ll~~~  154 (396)
                      .|+.+++++|+++|++++..+..  .+.||++++  ...|+.+++++|++..
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~~~~~--~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFAMTYS--DMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCSS--SCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcccccCC--CCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999996644434  577776655  6778999999999764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.1e-26  Score=176.26  Aligned_cols=107  Identities=19%  Similarity=0.247  Sum_probs=99.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCccccccccCCCCchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHH
Q 037504           24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA  103 (396)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~  103 (396)
                      .|||++|++.|+.++|+.|++. |++++.+ +..|+||||+|+..|+.+++++|++.|  +++  +.+|..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~g--~di--n~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKG--ADI--NAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHSS--CTT--TCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccc-ccccccccccccccccccccccccccc--cee--eecccccccchhhhh
Confidence            4899999999999999999975 8999988 999999999999999999999999998  776  999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHH
Q 037504          104 ASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAA  139 (396)
Q Consensus       104 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~  139 (396)
                      +.|+.+++++|+++|++   ++.+|.+|.||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~Gad---~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGAD---KTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCCC---SSSSSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhccccc---ceeeCCCCCCHHHHHh
Confidence            99999999999999999   5667889999999984

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.6e-25  Score=169.33  Aligned_cols=108  Identities=23%  Similarity=0.224  Sum_probs=96.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccc
Q 037504           96 CTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDS  175 (396)
Q Consensus        96 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~  175 (396)
                      .|||+||++.|+.++|++|+++|++   ++.+|..|+||||+|+..|+.+++++|++.++                    
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d---~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~--------------------   59 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--------------------   59 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC---CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC--------------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc---cccccccccccccccccccccccccccccccc--------------------
Confidence            4899999999999999999999998   55667789999999999999999998887654                    


Q ss_pred             hhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHH
Q 037504          176 YETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMRE  255 (396)
Q Consensus       176 ~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~  255 (396)
                                                                               +++.+|..|+||||+|+++|+.+
T Consensus        60 ---------------------------------------------------------din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_          60 ---------------------------------------------------------DINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             ---------------------------------------------------------TTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ---------------------------------------------------------eeeecccccccchhhhhhcCchh
Confidence                                                                     35677889999999999999999


Q ss_pred             HHHHHHhhccccccccccccCCCCchhhhhhc
Q 037504          256 IFKFIFEISSVADLLFDSKDKDGNNILHLAGK  287 (396)
Q Consensus       256 ~v~~Ll~~g~~~~~~~n~~d~~g~TpLh~A~~  287 (396)
                      ++++|+++|++    ++.+|++|+||||+|..
T Consensus        83 ~v~~Ll~~Gad----~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          83 CVKLLLSKGAD----KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHTTCCC----SSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhccccc----ceeeCCCCCCHHHHHhH
Confidence            99999999999    88999999999999854

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=168.45  Aligned_cols=120  Identities=19%  Similarity=0.191  Sum_probs=105.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHHhhhcccchhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCC-cHHH
Q 037504           58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRM-LPIV  136 (396)
Q Consensus        58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-tpLh  136 (396)
                      +.++||+|+..|+.++|++|+++|  +++  +.+|..|.||||+|+ .|+.+++++|+++|+++   +.+|..+. ||||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g--ad~--n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~L~   74 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG--ANP--NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP---NCADPATLTRPVH   74 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT--CCT--TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC---CCCCTTTCCCHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC--Ccc--ccccccccccccccc-ccccccccccccccccc---ccccccccccccc
Confidence            568999999999999999999988  776  999999999999775 69999999999999994   44455555 6999


Q ss_pred             HHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHH
Q 037504          137 GAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERAL  216 (396)
Q Consensus       137 ~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (396)
                      +|+..|+.+++++|++.|+                                                             
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga-------------------------------------------------------------   93 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGA-------------------------------------------------------------   93 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred             ccccccccccccccccccc-------------------------------------------------------------
Confidence            9999999999999998765                                                             


Q ss_pred             HHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHh
Q 037504          217 ELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE  262 (396)
Q Consensus       217 ~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  262 (396)
                                      +++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        94 ----------------~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          94 ----------------RLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ----------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ----------------ccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                            356678899999999999999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.5e-23  Score=166.14  Aligned_cols=125  Identities=22%  Similarity=0.282  Sum_probs=109.8

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHhCccccccc-----cCCCCchHHHHHHHc---CCHHHHHHHHHHhhhcccchhcccCC
Q 037504           23 RRLKLYRVALNGDWARAKVIYDEHKDEIGDV-----ITRLGDTALHVAAAA---NRIDFVKKLVKKMKAENLDLAKRNRI   94 (396)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~d~~~~d~~   94 (396)
                      ....|+.|++.+++..+..++.. |.+++..     .+..|+||||+|++.   |+.++|++|++.|  +++  +.+|..
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--adi--n~~d~~   80 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS--GNL--DKQTGK   80 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC--SCT--TCCCTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC--CCh--hhhhhh
Confidence            34567799999999999999875 6655433     257799999999974   6789999999998  776  999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcc
Q 037504           95 GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETK  155 (396)
Q Consensus        95 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~  155 (396)
                      |+||||+|++.|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus        81 g~TpLh~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          81 GSTALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hccccccccccccccccccccccCcc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999999999   55667799999999999999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=161.38  Aligned_cols=117  Identities=20%  Similarity=0.217  Sum_probs=77.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCCcHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccch
Q 037504           97 TALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSY  176 (396)
Q Consensus        97 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~  176 (396)
                      ++|+.|+..|+.++|++|+++|++   ++.+|.+|+||||+|+..|+.+++++|++.++                     
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d---~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~---------------------   58 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV---------------------   58 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC---------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC---cccccccccccccccccccccccccccccccc---------------------
Confidence            466777777777777777777776   44455567777777777777777777765543                     


Q ss_pred             hhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhhHHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHH
Q 037504          177 ETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREI  256 (396)
Q Consensus       177 ~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~  256 (396)
                                                                              +++.+|.+|+||||+|+.+|+.++
T Consensus        59 --------------------------------------------------------~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1          59 --------------------------------------------------------NVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             --------------------------------------------------------CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             --------------------------------------------------------ccccccccCcccccccchhhHHHH
Confidence                                                                    244556667777777777777777


Q ss_pred             HHHHHhhccccccccccccC-CCCchhhhh--hcCCCCCccccc
Q 037504          257 FKFIFEISSVADLLFDSKDK-DGNNILHLA--GKLPPLNRLNIV  297 (396)
Q Consensus       257 v~~Ll~~g~~~~~~~n~~d~-~g~TpLh~A--~~~~~~~~~~~l  297 (396)
                      +++|+++|++    ++.++. .|+||++++  ++.|+.+++++|
T Consensus        83 v~~Ll~~ga~----v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          83 CKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             HHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             HHHHHHcCCC----cccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            7777777777    555543 466665544  456667766665

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.5e-21  Score=154.44  Aligned_cols=126  Identities=18%  Similarity=0.126  Sum_probs=105.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHhhhcccc----hhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCccccCCCCCCC
Q 037504           60 TALHVAAAANRIDFVKKLVKKMKAENLD----LAKRNRIGCTALFYAAAS---GSVELVKATMEGNEDITMVPQDDKDRM  132 (396)
Q Consensus        60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~d----~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~  132 (396)
                      ..|+.|++.+.+..+..++..|  .++.    ....+..|+||||+|++.   |+.+++++|+++|++   ++.+|..|+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---in~~d~~g~   82 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcC--CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---hhhhhhhhc
Confidence            3466888999999999998887  4441    122377899999999974   678999999999999   566788999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhhcccCCCCcchhHHHHHHhhccchhhHHHHHHhcCCCCCCCCCcchhhhhhhccchhhhh
Q 037504          133 LPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVEN  212 (396)
Q Consensus       133 tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~g~~~l~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      ||||+|+..|+.+++++|+++|+                                                         
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~ga---------------------------------------------------------  105 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKA---------------------------------------------------------  105 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             cccccccccccccccccccccCc---------------------------------------------------------
Confidence            99999999999999999997665                                                         


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccccCCCCcHHHHHHHcCcHHHHHHHHhhcccc
Q 037504          213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVA  267 (396)
Q Consensus       213 ~~~~~~~~~ll~~ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  267 (396)
                                          +++.+|.+|+||||+|++.|+.+++++|++.++..
T Consensus       106 --------------------d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         106 --------------------SIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             --------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             --------------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence                                35677889999999999999999999999988763