Citrus Sinensis ID: 037510
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 806 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LN69 | 904 | Putative pentatricopeptid | yes | no | 0.977 | 0.871 | 0.553 | 0.0 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.957 | 0.704 | 0.284 | 5e-89 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.868 | 0.771 | 0.287 | 6e-83 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.786 | 0.840 | 0.296 | 5e-82 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.682 | 0.736 | 0.315 | 5e-82 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.794 | 0.863 | 0.287 | 8e-78 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.869 | 0.836 | 0.284 | 6e-77 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.861 | 0.909 | 0.263 | 9e-77 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.888 | 0.782 | 0.264 | 3e-75 | |
| Q9LER0 | 940 | Pentatricopeptide repeat- | no | no | 0.831 | 0.712 | 0.272 | 1e-73 |
| >sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/810 (55%), Positives = 595/810 (73%), Gaps = 22/810 (2%)
Query: 6 QPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFR 65
+PELL+R++RLLVLGR++A+ +LS DFSD+LL+S+L++LRLNP+A L F LASKQQKFR
Sbjct: 42 RPELLERVSRLLVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFR 101
Query: 66 PNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF 125
P+ K YCK+VHILSRAR + +T+++L ELV L N++GF++W ELVR +KEF+FSPTVF
Sbjct: 102 PDYKAYCKMVHILSRARNYQQTKSYLCELVAL---NHSGFVVWGELVRVFKEFSFSPTVF 158
Query: 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185
DMILK+YA+KG++KNALHVFDNMG YG IPSL SCN LLSNLV+ GE +VAL VY+QM+
Sbjct: 159 DMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMIS 218
Query: 186 VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMEN-LGFELNVVTYNSLIDGYVSLGDLN 244
+ PDVFTCSIVVNAYC+ +++KA+ F KE E+ LG ELNVVTYNSLI+GY +GD+
Sbjct: 219 FEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVE 278
Query: 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVL 304
G RVL E+G+SR VTYT+L KGYCK+ MEEAE++ +KE+ ++ D++ YGVL
Sbjct: 279 GMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKK-LVADQHMYGVL 337
Query: 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364
+DGYC+ G++ +A+RV + M++ G+ N ICNSLINGYCK GQ+ EA+++ M DW+L
Sbjct: 338 MDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL 397
Query: 365 RPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424
+PD ++NTLVDGYCR + EA +LC +M ++ + P+V+TYN LLKG R+G + L
Sbjct: 398 KPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
LW MMLKR V +E+ TLL+ LF GDF A+KLW N+LARG +TIT N MI GLC
Sbjct: 458 LWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLC 517
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
KM K+ EA++I D + C P + TY+ LS GY KVGNL+EAF +K MER+
Sbjct: 518 KMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERK------- 570
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
I P+I+MYN LIS AFK R L + DL+ E++ GL P + TYGALI+GWC+ GM++
Sbjct: 571 --GIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMID 628
Query: 605 KAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD-FVPDLKYM--- 660
KA+ F+MIEKG + NV ICSK+ ++L RL KIDEA + LQK+VDFD +P + +
Sbjct: 629 KAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEF 688
Query: 661 --ASSAINVDAQKIAMSLDESA-RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717
AS+ + QKIA S++ S + L VPN +VYN+ IAG+CK+G + DAR++FS LL +
Sbjct: 689 LEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSS 748
Query: 718 G-FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDR 776
F PD +TY+ LIHG A GDIN+AF LRDEM ++PNI TYN+L+ GLC G +DR
Sbjct: 749 DRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDR 808
Query: 777 AKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
A+RL KL QKG+TP +TYN LIDG K+
Sbjct: 809 AQRLLHKLPQKGITPNAITYNTLIDGLVKS 838
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 228/802 (28%), Positives = 394/802 (49%), Gaps = 30/802 (3%)
Query: 13 ITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFRPN--IKC 70
I +L + R+ +++++ D+ L V KL +L F + KQ + ++
Sbjct: 23 IYNILTIDRWGSLNHM--DYRQARLRLVHGKL------ALKFLKWVVKQPGLETDHIVQL 74
Query: 71 YCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILK 130
C HIL RARM+D R L EL + + ++ L+ Y+ +P+V+D++++
Sbjct: 75 VCITTHILVRARMYDPARHILKELSLMSGKSS---FVFGALMTTYRLCNSNPSVYDILIR 131
Query: 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190
+Y ++GM++++L +F MG YG PS+ +CN +L ++VK+GE ++M++ I P
Sbjct: 132 VYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICP 191
Query: 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVL 250
DV T +I++N C E S EK+ +++ME G+ +VTYN+++ Y G A +L
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251
Query: 251 EWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310
+ KG+ TY L C+ +++ + +LR M++ + +E Y LI+G+
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKR-MIHPNEVTYNTLINGFSN 310
Query: 311 VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFS 370
GKV A ++LNEML GL N + N+LI+G+ G EA ++ M L P S
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370
Query: 371 FNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430
+ L+DG C+ + A M R G+ +TY ++ GLC+ G +DEA+ L M
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430
Query: 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMT 490
K + P+ V Y L++ G F A ++ I G N I ++T+I C+MG +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490
Query: 491 EAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP 550
EA +I++ M G + T+ L CK G + EA E + M + I+P
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA---------EEFMRCMTSDGILP 541
Query: 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAY 610
+ ++ LI+ S E + EM +G +P TYG+L+ G C G L +A K
Sbjct: 542 NTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 601
Query: 611 FDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670
+ + + + + L++ +C+ G + +A +MV +PD Y +S I+ +
Sbjct: 602 KSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD-SYTYTSLISGLCR 660
Query: 671 K------IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF 724
K I + + AR +PN V+Y + G+ K+G + G +PD
Sbjct: 661 KGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIV 720
Query: 725 TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKL 784
T + +I GY+ +G I + +L EM N PN+ TYN L+ G ++ + L+ +
Sbjct: 721 TTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSI 780
Query: 785 RQKGLTPTVVTYNILIDGYCKA 806
G+ P +T + L+ G C++
Sbjct: 781 ILNGILPDKLTCHSLVLGICES 802
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 208/724 (28%), Positives = 353/724 (48%), Gaps = 24/724 (3%)
Query: 77 ILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF--DMILKIYAQ 134
++++ + E R L GL K + G + EL P V+ +++ +
Sbjct: 182 MITKVSLLPEVRTLSALLHGLVKFRHFGLAM--ELFNDMVSVGIRPDVYIYTGVIRSLCE 239
Query: 135 KGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT 194
L A + +M GC ++ N L+ L K + + A+ + + + + PDV T
Sbjct: 240 LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVT 299
Query: 195 CSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTC 254
+V CK + E L+ + EM L F + +SL++G G + A +++
Sbjct: 300 YCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVV 359
Query: 255 EKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKV 314
+ G+S Y L CK K EAE + RM + + ++ Y +LID +C+ GK+
Sbjct: 360 DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGK-IGLRPNDVTYSILIDMFCRRGKL 418
Query: 315 DEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTL 374
D A+ L EM+ TGL++++ NSLING+CK G + A+ + M + L P ++ +L
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 375 VDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCV 434
+ GYC + + +A RL EM +GI PS+ T+ TLL GL R G + +A+ L+ M + V
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 435 CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQK 494
PN V Y +++ +GD A + + +G +T ++ +I GLC G+ +EA+
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 495 IFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDM 554
D + + C N I Y L G+C+ G LEEA + M +R + +D+
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV-----------DLDL 647
Query: 555 --YNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFD 612
Y LI + K ++ LL EM GL P+ V Y ++I G +AF +
Sbjct: 648 VCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDL 707
Query: 613 MIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD-LKYMASSAI----NV 667
MI +G PN + +++ LC+ G ++EA + KM VP+ + Y I V
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEV 767
Query: 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYS 727
D QK A+ L + + N YN++I G C+ G + +A + + ++ G SPD TY+
Sbjct: 768 DMQK-AVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYT 826
Query: 728 TLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQK 787
T+I+ D+ +A L + M + + P+ YN+L+ G C +GE+ +A L ++ ++
Sbjct: 827 TMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886
Query: 788 GLTP 791
GL P
Sbjct: 887 GLIP 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 207/698 (29%), Positives = 339/698 (48%), Gaps = 64/698 (9%)
Query: 40 VLQKLRLNPD--ASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYEL-VG 96
+L LR PD A+L F LASK+ F P Y +I+ L R+ FD+ + L ++
Sbjct: 53 LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSS 112
Query: 97 LCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNM-GKYGCIP 155
C+ + FLI L+ +Y +F + L V D M ++G P
Sbjct: 113 RCEMGTSTFLI---LIESYAQFELQDEI-----------------LSVVDWMIDEFGLKP 152
Query: 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFV 215
N +L+ LV + + + +M GI PDV T ++++ A C+ + A+ +
Sbjct: 153 DTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILML 212
Query: 216 KEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275
++M + G + T+ +++ GY+ GDL+GA R+ E E G S + V+ + G+CK+
Sbjct: 213 EDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKE 272
Query: 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLI 335
++E+A N ++ M +D D+Y + L++G CK G V AI +++ ML+ G + ++
Sbjct: 273 GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 336 CNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEML 395
NS+I+G CKLG+V EA VL M + P++ ++NTL+ C+E + EA L +
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 396 RQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFY 455
+GI P V T+N+L++GLC + A+ L+ M + P+E Y L+D L +KG
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452
Query: 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLS 515
A+ + + G ++ IT+NT+I G CK K EA++IFD+M+ G N +TY TL
Sbjct: 453 EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512
Query: 516 DGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLL 575
DG CK +E+A +++ M E P YN L++ + ++ D++
Sbjct: 513 DGLCKSRRVEDA---------AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL 635
M + G P+IVTYG LISG C AG + A K + KG + + ++ L R
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRK 623
Query: 636 GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695
K EA ++M++ + P P+ V Y IV
Sbjct: 624 RKTTEAINLFREMLEQNEAP------------------------------PDAVSYRIVF 653
Query: 696 AGICKSGN-VTDARRIFSALLLTGFSPDNFTYSTLIHG 732
G+C G + +A LL GF P+ + L G
Sbjct: 654 RGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEG 691
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 184/583 (31%), Positives = 306/583 (52%), Gaps = 33/583 (5%)
Query: 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYV-SLGDLNGAKRVLEWTCE 255
+VV +Y + ++KAL V + GF V++YN+++D + S +++ A+ V + E
Sbjct: 139 LVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE 198
Query: 256 KGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD 315
+S TY L +G+C ++ A + +M E + + Y LIDGYCK+ K+D
Sbjct: 199 SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKID 257
Query: 316 EAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLV 375
+ ++L M GLE NL+ N +ING C+ G++ E VL M D ++NTL+
Sbjct: 258 DGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317
Query: 376 DGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435
GYC+E + +A + AEMLR G+ PSV+TY +L+ +C+ G+++ A+ M R +C
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKI 495
PNE Y TL+D KG A ++ + GF + +T+N +I G C GKM +A +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMY 555
+ MKE G P++++Y T+ G+C+ +++EA ++K RE M ++ I P Y
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVK-----RE----MVEKGIKPDTITY 488
Query: 556 NYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIE 615
+ LI + R DL EM +GL P+ TY ALI+ +C G L KA + + +M+E
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE 548
Query: 616 KGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP-DLKY--MASSAINVDAQKI 672
KG P+V S L++ L + + EA L K+ + VP D+ Y + + N++ + +
Sbjct: 549 KGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608
Query: 673 AMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHG 732
+I G C G +T+A ++F ++L PD Y+ +IHG
Sbjct: 609 VS-------------------LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHG 649
Query: 733 YAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELD 775
+ GDI +A+ L EM+K + + T +LV L G+++
Sbjct: 650 HCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVN 692
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 192/668 (28%), Positives = 336/668 (50%), Gaps = 28/668 (4%)
Query: 8 ELLDRITRLLVLGRFD----AVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQK 63
E + +IT ++ L R + ++ F D L VL K++ + L FF A ++
Sbjct: 57 EFVHQITNVIKLRRAEPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARSRRD 116
Query: 64 FRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLI--WDELVRAYKEFAFS 121
N++ C ++H+ ++ ++ + K N + +D LV YK++
Sbjct: 117 --SNLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSD 174
Query: 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKN-GEGYVALLVY 180
P VFD+ ++ G+L+ A VF+ M YG + S+ SCN L+ L K+ + A++V+
Sbjct: 175 PRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF 234
Query: 181 EQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSL 240
+ VG+ +V + +IV++ C+ +++A + ME G+ +V++Y+++++GY
Sbjct: 235 REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRF 294
Query: 241 GDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYA 300
G+L+ +++E KG+ + Y ++ C+ K+ EAE M + ++ D
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG-ILPDTVV 353
Query: 301 YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG 360
Y LIDG+CK G + A + EM + ++L ++I+G+C++G + EA ++ M
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413
Query: 361 DWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVD 420
L PDS +F L++GYC+ M +AFR+ M++ G P+VVTY TL+ GLC+ GD+D
Sbjct: 414 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 473
Query: 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMI 480
A L M K + PN Y ++++ L G+ AVKL A G +T+T+ T++
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Query: 481 KGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREIL 540
CK G+M +AQ+I +M G P I+T+ L +G+C G LE+ K+ N M +
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK--- 590
Query: 541 PSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA 600
I P+ +N L+ L + + +M + G+ P+ TY L+ G C A
Sbjct: 591 ------GIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 644
Query: 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD---------F 651
+ +A+ + +M KGFS +V+ S L+ + K EA +M F
Sbjct: 645 RNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
Query: 652 DFVPDLKY 659
DF D KY
Sbjct: 705 DFFSDTKY 712
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 212/744 (28%), Positives = 350/744 (47%), Gaps = 43/744 (5%)
Query: 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELV--------- 95
++NP +L FF+LAS F +++ YC ++ +L A + R L L+
Sbjct: 116 KVNPKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPC 175
Query: 96 GLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKN---ALHVFDNMGKYG 152
GL + A L + E + D+++++Y + AL VF + G
Sbjct: 176 GLRDSRVAIADAMASLSLCFDE-EIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKG 234
Query: 153 CIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212
PS +CN LL++LV+ E ++ + + G+ PDV+ + +NA+CK +E+A+
Sbjct: 235 MFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAV 293
Query: 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGY 272
+ME G NVVT+N++IDG G + A E E+G+ T +TY+ L KG
Sbjct: 294 KLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 353
Query: 273 CKQHKMEEAENMLRRMKEE---DDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL 329
+ ++ +A +L+ M ++ +VIV Y LID + + G +++AI + + M+ GL
Sbjct: 354 TRAKRIGDAYFVLKEMTKKGFPPNVIV----YNNLIDSFIEAGSLNKAIEIKDLMVSKGL 409
Query: 330 EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFR 389
+ N+LI GYCK GQ A+R+L+ M + SF +++ C A R
Sbjct: 410 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 469
Query: 390 LCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILF 449
EML + + P TL+ GLC+ G +AL LW L + + LL L
Sbjct: 470 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLC 529
Query: 450 NKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNII 509
G A ++ IL RG + +++NT+I G C K+ EA D+M + G P+
Sbjct: 530 EAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNY 589
Query: 510 TYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNY--LISVAFKSRE 567
TY L G + +EEA + + +R +LP D+Y Y +I K+
Sbjct: 590 TYSILICGLFNMNKVEEAIQFWDDCKRNGMLP-----------DVYTYSVMIDGCCKAER 638
Query: 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627
+ EM + + PN V Y LI +C +G L+ A + DM KG SPN A +
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698
Query: 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ-----KIAMSLDESARS 682
L+ + + +++EA + ++M P++ + ++ I+ + K+ L E
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNV-FHYTALIDGYGKLGQMVKVECLLREMHSK 757
Query: 683 LCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEA 742
PN + Y ++I G + GNVT+A R+ + + G PD+ TY I+GY G + EA
Sbjct: 758 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 817
Query: 743 FNLRDEMLKINLVPNIATYNSLVS 766
F DE N I +N L+
Sbjct: 818 FKGSDEE---NYAAIIEGWNKLIQ 838
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 198/752 (26%), Positives = 350/752 (46%), Gaps = 58/752 (7%)
Query: 43 KLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNY 102
K + +P +L F K+ F+ + Y ++ L F+ L ++ + N
Sbjct: 15 KCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM----RENV 70
Query: 103 AGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNC 162
++ V A +K Y +KG ++ A++VF+ M Y C P++ S N
Sbjct: 71 GNHMLEGVYVGA--------------MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNA 116
Query: 163 LLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLG 222
++S LV +G A VY +M GI PDV++ +I + ++CK AL + M + G
Sbjct: 117 IMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG 176
Query: 223 FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282
E+NVV Y +++ G+ + G+S T+ L + CK+ ++E E
Sbjct: 177 CEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECE 236
Query: 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLING 342
+L ++ + V+ + + Y + I G C+ G++D A+R++ +++ G + +++ N+LI G
Sbjct: 237 KLLDKVIKRG-VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYG 295
Query: 343 YCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPS 402
CK + EA+ L M + L PDS+++NTL+ GYC+ + A R+ + + G P
Sbjct: 296 LCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPD 355
Query: 403 VVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWN 462
TY +L+ GLC G+ + AL L+ L + + PN + Y TL+ L N+G A +L N
Sbjct: 356 QFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLAN 415
Query: 463 NILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVG 522
+ +G TFN ++ GLCKMG +++A + M G P+I T+ L GY
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475
Query: 523 NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG 582
+E A EIL M + P + YN L++ K+ + +++ M G
Sbjct: 476 KMENAL---------EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG 526
Query: 583 LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642
PN+ T+ L+ C L++A +M K +P+ L+ C+ G +D A
Sbjct: 527 CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAY 586
Query: 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702
+KM +A K++ S YNI+I +
Sbjct: 587 TLFRKM------------------EEAYKVSSSTP------------TYNIIIHAFTEKL 616
Query: 703 NVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYN 762
NVT A ++F ++ PD +TY ++ G+ G++N + EM++ +P++ T
Sbjct: 617 NVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLG 676
Query: 763 SLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794
+++ LC + A + ++ QKGL P V
Sbjct: 677 RVINCLCVEDRVYEAAGIIHRMVQKGLVPEAV 708
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 221/836 (26%), Positives = 372/836 (44%), Gaps = 120/836 (14%)
Query: 39 SVLQKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLC 98
S L L L+P +L F S+ +++ ++ Y ++ +L
Sbjct: 94 SSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLL-------------------I 134
Query: 99 KNNYAG--FLIWDELVRAYKEFAFSPTVFDMILKIYA-QKGMLKNALHVFDNMGKYGCIP 155
N Y G F I ++++ + V D+ K+ ++ LK L + GC
Sbjct: 135 NNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLII-------GCY- 186
Query: 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFV 215
N LL++L + G VY +M+ + P+++T + +VN YCK ++E+A +V
Sbjct: 187 -----NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYV 241
Query: 216 KEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275
++ G + + TY SLI GY DL+ A +V KG R V YT L G C
Sbjct: 242 SKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVA 301
Query: 276 HKMEEAENMLRRMK----------------------------------EEDDVIVDEYAY 301
+++EA ++ +MK EE + + + Y
Sbjct: 302 RRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTY 361
Query: 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361
VLID C K ++A +L +ML+ GL N++ N+LINGYCK G + +A V+ M
Sbjct: 362 TVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES 421
Query: 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421
L P++ ++N L+ GYC+ ++ +A + +ML + + P VVTYN+L+ G CR G+ D
Sbjct: 422 RKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS 480
Query: 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481
A L +M R + P++ Y +++D L A L++++ +G N + + +I
Sbjct: 481 AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540
Query: 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILP 541
G CK GK+ EA + +KM CLPN +T+ L G C G L+EA ++ M + + P
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQP 600
Query: 542 SMEKEAIV--------------------------PSIDMYNYLISVAFKSRELTSLVDLL 575
++ + I+ P Y I + L D++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL 635
A+M+ G+ P++ TY +LI G+ D G N AF M + G P+ L+ L +
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEM 720
Query: 636 G----KIDEANI-FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVV 690
K E + + M++FD V +L L++ PN
Sbjct: 721 KYGKQKGSEPELCAMSNMMEFDTVVEL------------------LEKMVEHSVTPNAKS 762
Query: 691 YNIVIAGICKSGNVTDARRIFSALLLT-GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEM 749
Y +I GIC+ GN+ A ++F + G SP ++ L+ + NEA + D+M
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDM 822
Query: 750 LKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805
+ + +P + + L+ GL GE +R +F L Q G + + I+IDG K
Sbjct: 823 ICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGK 878
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 204/750 (27%), Positives = 355/750 (47%), Gaps = 80/750 (10%)
Query: 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVAL-LVYE 181
++F + ++Y L A M +G +P R N L+ NG + + L+Y
Sbjct: 61 SLFHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYS 120
Query: 182 QMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLG 241
+M+ G+ PDVF +++++++CK + A+ ++ N ++ VTYN++I G G
Sbjct: 121 KMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLR---NRVISIDTVTYNTVISGLCEHG 177
Query: 242 DLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAY 301
+ A + L + GI V+Y TL G+CK A+ ++ + E ++ +
Sbjct: 178 LADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISE-----LNLITH 232
Query: 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361
+L+ Y + ++EA R +M+ +G + +++ +S+IN CK G+V E +LR M +
Sbjct: 233 TILLSSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEE 289
Query: 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421
++ P+ ++ TLVD + A L ++M+ +GI +V Y L+ GL + GD+ E
Sbjct: 290 MSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLRE 349
Query: 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481
A + M+L+ PN V Y L+D L GD A + +L + N +T+++MI
Sbjct: 350 AEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMIN 409
Query: 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM------E 535
G K G + EA + KM++ +PN TY T+ DG K G E A ++ M E
Sbjct: 410 GYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEE 469
Query: 536 RREILPSM-----------EKEAIVP-------SIDMYNY--LISVAFKSRELTSLVDLL 575
IL ++ E + +V ++D NY LI V FK + + +
Sbjct: 470 NNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWA 529
Query: 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAI----------- 624
EMQ G+ ++V+Y LISG G + + AY M EKG P++A
Sbjct: 530 EEMQERGMPWDVVSYNVLISGMLKFGKVGADW-AYKGMREKGIEPDIATFNIMMNSQRKQ 588
Query: 625 ------------------------CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK-- 658
C+ +V LC GK++EA L +M+ + P+L
Sbjct: 589 GDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTY 648
Query: 659 --YMASSAINVDAQKIAMSLDESARSLCVP-NYVVYNIVIAGICKSGNVTDARRIFSALL 715
++ +S+ + A I E+ S + + VYN +IA +CK G A + +
Sbjct: 649 RIFLDTSSKHKRADAI-FKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDME 707
Query: 716 LTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELD 775
GF PD T+++L+HGY + +A + M++ + PN+ATYN+++ GL ++G +
Sbjct: 708 ARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIK 767
Query: 776 RAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805
+ +++ +G+ P TYN LI G K
Sbjct: 768 EVDKWLSEMKSRGMRPDDFTYNALISGQAK 797
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 806 | ||||||
| 359492658 | 939 | PREDICTED: putative pentatricopeptide re | 0.982 | 0.843 | 0.645 | 0.0 | |
| 302142431 | 839 | unnamed protein product [Vitis vinifera] | 0.987 | 0.948 | 0.643 | 0.0 | |
| 255538538 | 947 | pentatricopeptide repeat-containing prot | 0.985 | 0.838 | 0.631 | 0.0 | |
| 147780655 | 1037 | hypothetical protein VITISV_004776 [Viti | 0.982 | 0.763 | 0.644 | 0.0 | |
| 449460167 | 942 | PREDICTED: putative pentatricopeptide re | 0.985 | 0.842 | 0.594 | 0.0 | |
| 357450627 | 859 | hypothetical protein MTR_2g049740 [Medic | 0.983 | 0.923 | 0.536 | 0.0 | |
| 224137250 | 795 | predicted protein [Populus trichocarpa] | 0.832 | 0.844 | 0.657 | 0.0 | |
| 186478651 | 904 | pentatricopeptide repeat-containing prot | 0.977 | 0.871 | 0.553 | 0.0 | |
| 297844892 | 903 | pentatricopeptide repeat-containing prot | 0.977 | 0.872 | 0.550 | 0.0 | |
| 218196467 | 939 | hypothetical protein OsI_19266 [Oryza sa | 0.959 | 0.823 | 0.472 | 0.0 |
| >gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/802 (64%), Positives = 627/802 (78%), Gaps = 10/802 (1%)
Query: 5 SQPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKF 64
+ PEL+ RI RL++L R +A+ L+F FSDD++D+VL+ LRLNP ASLGFFQ SKQQ F
Sbjct: 39 APPELVSRICRLVLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNF 98
Query: 65 RPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTV 124
RPN+K YCK+VHILSR RM+DETRA+L +LV LCK G +IWDELV Y+EFAFSPTV
Sbjct: 99 RPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTV 158
Query: 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMM 184
FDMILK+Y +KG+ KNAL+VFDNMGK G IPSLRSCN LL+NLVKNGE + A VY+QM+
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218
Query: 185 RVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN 244
RVGIVPDVF SI+VNA+CK+ +++A FVK+MENLG E N+VTY+SLI+GYVSLGD+
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278
Query: 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVL 304
AK VL++ EKG+SR VTYT L KGYCKQ KM+EAE +LR M+EE ++ DE AYGVL
Sbjct: 279 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 338
Query: 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364
IDGYC+ GK+D+A+R+L+EML+ GL+ NL ICNSLINGYCK G++ EA+ V+ M DWNL
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 398
Query: 365 RPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424
+PDS+S+NTL+DGYCRE +EAF LC +ML++GIEP+V+TYNTLLKGLCRVG D+AL
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
+W +M+KR V P+EVGY TLLD LF +F GA LW +ILARGF K+ ITFNTMI GLC
Sbjct: 459 IWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
KMGKM EA++IFDKMK+LGC P+ ITYRTL DGYCK N+ +AFK+K MER
Sbjct: 519 KMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-------- 570
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
E I PSI+MYN LIS FKSR L + DLL EM GL PNIVTYGALI GWC GML+
Sbjct: 571 -EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 629
Query: 605 KAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664
KAF +YF+M E G S N+ ICS +VS L RLG+IDEAN+ +QKMVD F PD + S
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSD 689
Query: 665 INVDA-QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723
I A QKIA SLDES ++ +PN +VYNI IAG+CK+G V DARR FS L L GF PDN
Sbjct: 690 IRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDN 749
Query: 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783
FTY TLIHGY+A G+++EAF LRDEML+ LVPNI TYN+L++GLC S +DRA+RLF K
Sbjct: 750 FTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK 809
Query: 784 LRQKGLTPTVVTYNILIDGYCK 805
L QKGL P VVTYN LIDGYCK
Sbjct: 810 LHQKGLFPNVVTYNTLIDGYCK 831
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/806 (64%), Positives = 628/806 (77%), Gaps = 10/806 (1%)
Query: 1 MPRLSQPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASK 60
MP + QP + RI RL++L R +A+ L+F FSDD++D+VL+ LRLNP ASLGFFQ SK
Sbjct: 1 MPIVRQPLAISRICRLVLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSK 60
Query: 61 QQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAF 120
QQ FRPN+K YCK+VHILSR RM+DETRA+L +LV LCK G +IWDELV Y+EFAF
Sbjct: 61 QQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAF 120
Query: 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVY 180
SPTVFDMILK+Y +KG+ KNAL+VFDNMGK G IPSLRSCN LL+NLVKNGE + A VY
Sbjct: 121 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVY 180
Query: 181 EQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSL 240
+QM+RVGIVPDVF SI+VNA+CK+ +++A FVK+MENLG E N+VTY+SLI+GYVSL
Sbjct: 181 QQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSL 240
Query: 241 GDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYA 300
GD+ AK VL++ EKG+SR VTYT L KGYCKQ KM+EAE +LR M+EE ++ DE A
Sbjct: 241 GDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERA 300
Query: 301 YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG 360
YGVLIDGYC+ GK+D+A+R+L+EML+ GL+ NL ICNSLINGYCK G++ EA+ V+ M
Sbjct: 301 YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMV 360
Query: 361 DWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVD 420
DWNL+PDS+S+NTL+DGYCRE +EAF LC +ML++GIEP+V+TYNTLLKGLCRVG D
Sbjct: 361 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 420
Query: 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMI 480
+AL +W +M+KR V P+EVGY TLLD LF +F GA LW +ILARGF K+ ITFNTMI
Sbjct: 421 DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 480
Query: 481 KGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREIL 540
GLCKMGKM EA++IFDKMK+LGC P+ ITYRTL DGYCK N+ +AFK+K MER
Sbjct: 481 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER---- 536
Query: 541 PSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA 600
E I PSI+MYN LIS FKSR L + DLL EM GL PNIVTYGALI GWC
Sbjct: 537 -----EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKE 591
Query: 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM 660
GML+KAF +YF+M E G S N+ ICS +VS L RLG+IDEAN+ +QKMVD F PD +
Sbjct: 592 GMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 651
Query: 661 ASSAINVDA-QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719
S I A QKIA SLDES ++ +PN +VYNI IAG+CK+G V DARR FS L L GF
Sbjct: 652 LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 711
Query: 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKR 779
PDNFTY TLIHGY+A G+++EAF LRDEML+ LVPNI TYN+L++GLC S +DRA+R
Sbjct: 712 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQR 771
Query: 780 LFCKLRQKGLTPTVVTYNILIDGYCK 805
LF KL QKGL P VVTYN LIDGYCK
Sbjct: 772 LFHKLHQKGLFPNVVTYNTLIDGYCK 797
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/807 (63%), Positives = 647/807 (80%), Gaps = 13/807 (1%)
Query: 3 RLSQPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQ 62
+L++PEL+DRI+RLLVLGR+ A+ +L+F FSD +LDSVL KL+ NP ASL FF+LASKQ
Sbjct: 29 KLTRPELIDRISRLLVLGRYHALKDLNFQFSDYILDSVLLKLKFNPIASLHFFKLASKQS 88
Query: 63 KFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSP 122
FRPN+ +CK+VHILSRARM+DETR++L ELV KNNY+ ++W+ELVR +++F FSP
Sbjct: 89 NFRPNVNSHCKLVHILSRARMYDETRSYLNELVTPSKNNYSSLVVWNELVRVFEDFKFSP 148
Query: 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQ 182
TVFDMILKIY +KGM+KNALHVFDNMGK GC+PSLRSCN LLS+LV+ GE A+LVY+
Sbjct: 149 TVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDH 208
Query: 183 MMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242
+ R+GIVPDVFTCSI+VNAYCK+ + A+DFVKEM+ LGFELNVVTYNSLIDG VS+GD
Sbjct: 209 INRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGD 268
Query: 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYG 302
+ A+ VL+ E+GI R VT T L KGYC+Q K+EEAE +LR M+ + +++DEYAYG
Sbjct: 269 MERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYG 328
Query: 303 VLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362
VLIDGYC+V K+D+A+R+ +EML GL MNL ICN+LINGYCK GQV EA+R+L M DW
Sbjct: 329 VLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDW 388
Query: 363 NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEA 422
+L P+S+S++TL+DG+CRE +T+A + EMLR GI+ +VVT+N+LLKGLCRVG ++A
Sbjct: 389 DLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDA 448
Query: 423 LHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKG 482
LH+W +MLKR V P+EV YCTLLD+LF G+F+ A+ LWN+ILARG+ ++T FNTMI G
Sbjct: 449 LHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMING 508
Query: 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPS 542
CKM KM EA++ F++MKELG P+ +TYRTL DGYCK+GN+EEAFK+K
Sbjct: 509 FCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKE---------K 559
Query: 543 MEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGM 602
MEKEAI+PSI++YN LI FKS++ ++DLL+EM GL PN+VTYG LI+GWCD G
Sbjct: 560 MEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGR 619
Query: 603 LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM-- 660
L+KAF AYFDMIEKGF+PNV ICSK+VS+L RLG+IDEAN+ LQKMV+ D D Y
Sbjct: 620 LDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDR 679
Query: 661 --ASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718
+ N+D+QKIA +LDES++S +PN VVYNI IAG+CKSG V DA++IFS+LLL G
Sbjct: 680 LHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRG 739
Query: 719 FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAK 778
FSPDNFTY TLIHGY+A G++N+AF+LRDEMLK L PNI TYN+L++GLC SG LDRA+
Sbjct: 740 FSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQ 799
Query: 779 RLFCKLRQKGLTPTVVTYNILIDGYCK 805
+LF KL KGL P V++YNILIDGYCK
Sbjct: 800 KLFDKLHLKGLAPNVISYNILIDGYCK 826
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/802 (64%), Positives = 625/802 (77%), Gaps = 10/802 (1%)
Query: 5 SQPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKF 64
+ PEL+ RI RL++L R +A+ L+F FSDD++D+VL+ LRLNP ASLGFFQ SKQQ F
Sbjct: 39 APPELVSRICRLVLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNF 98
Query: 65 RPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTV 124
RPN+K YCK+VHILSR RM+DETRA+L +LV LCK G +IWDELV Y+EFAFSPTV
Sbjct: 99 RPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTV 158
Query: 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMM 184
FDMILK+Y +KG+ KNAL+VFDNMGK G IPSLRSCN LL+NLVKNGE + A VY+QM+
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218
Query: 185 RVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN 244
RVGIVPDVF SI+VNA+CK+ +++A FVK+MENLG E N+VTY+SLI+GYVSLGD+
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278
Query: 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVL 304
AK VL++ EKG+SR VTYT L KGYCKQ KM+EAE +LR M+EE ++ DE AYGVL
Sbjct: 279 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 338
Query: 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364
IDGYC+ GK+D+A+R+L+EML+ GL+ NL ICNSLINGYCK G++ EA+ V+ M DWNL
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 398
Query: 365 RPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424
+PDS+S+NTL+DGYCRE +EAF LC +ML++GIEP+V+TYNTLLKGLCRVG D+AL
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
+W +M+K V P+EVGY TLLD LF +F GA LW +ILARGF K+ ITFNTMI GLC
Sbjct: 459 IWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
KMGKM EA++IFDKMK+LGC P+ ITYRTL DGYCK N+ +AFK+K MER
Sbjct: 519 KMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-------- 570
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
E I PSI+MYN LIS FKSR L DLL EM GL PNIVTYGALI GWC GML+
Sbjct: 571 -EXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 629
Query: 605 KAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664
KAF +YF+M E G S N+ ICS +VS L RLG+IDEAN+ +QKMVD F PD + S
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSD 689
Query: 665 INVDA-QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723
I A QKIA SLDES ++ +PN +VYNI IAG+CK+G V DARR FS L L GF PDN
Sbjct: 690 IRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDN 749
Query: 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783
FTY TLIHGY+A G+++EAF LRDEML+ LVPNI TYN+L++GLC S +DRA+RLF K
Sbjct: 750 FTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK 809
Query: 784 LRQKGLTPTVVTYNILIDGYCK 805
L QKGL P VVTYN LIDGYCK
Sbjct: 810 LHQKGLFPNVVTYNTLIDGYCK 831
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/808 (59%), Positives = 606/808 (75%), Gaps = 14/808 (1%)
Query: 3 RLSQPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQ 62
+LSQP+L+DRI+RLLVL RFDA+ NLSF FS++L+D VL+ LRLNPDASL FF+LASKQ
Sbjct: 67 KLSQPDLVDRISRLLVLRRFDALANLSFSFSNELMDLVLRNLRLNPDASLEFFKLASKQP 126
Query: 63 KFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSP 122
KFRP++ YCKIVHILSRARM+ E R +L ELV LCKNNY +WDELV Y+EF+FSP
Sbjct: 127 KFRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFSP 186
Query: 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQ 182
TVFDMILK++A+KGM K AL VFDNMGK G +PSLRSCN LLSNLV+NGE + ALLVYEQ
Sbjct: 187 TVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQ 246
Query: 183 MMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242
M+ +GI+PD+F+ +I+VNAYCKE +++A +FVKEME E NVVTYNSLIDGYVSLGD
Sbjct: 247 MIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGD 306
Query: 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYG 302
+ GAK+VL EKGI + TYT L KGYCK+ +ME+AE ++ M E+ ++ VDE+ YG
Sbjct: 307 VCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEK-NLFVDEHVYG 365
Query: 303 VLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362
VLI YC G+VD+A+R+ + MLK GL+MN +ICNSLINGYCKLG V +A VL M DW
Sbjct: 366 VLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDW 425
Query: 363 NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEA 422
NL+PDS+ +NTL+DG+C++ D +AF+LC EM +G+ +VVTYNTLLK L VG V+ A
Sbjct: 426 NLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHA 485
Query: 423 LHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKG 482
LH+W +M KR V PNEV YCTLLD F G F A+ +W + L++GF K+ +NTMI G
Sbjct: 486 LHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICG 545
Query: 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPS 542
CKM K+ +AQ+IF KMKELG P+ ITYRTL DGYCKVGNL EA K+K++ ER
Sbjct: 546 FCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSER------ 599
Query: 543 MEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGM 602
+ I S +MYN LI+ F+S EL L LLAEM+ L PN+VTYG+LI+GWCD GM
Sbjct: 600 ---DGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGM 656
Query: 603 LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP----DLK 658
++KA+ AYF MI+KG +PN+ I SK+VS+L R GKIDEAN+ L ++ D D + ++
Sbjct: 657 MDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVE 716
Query: 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718
S +++ QKI S + A S+ + N +VYNI I G+CKS N+ D RRI S LLL G
Sbjct: 717 LPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKG 776
Query: 719 FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAK 778
F PDN+TY +LIH +AVG +NEAF LRD+M+ LVPNI YN+L++GLC SG LDRA+
Sbjct: 777 FCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRAR 836
Query: 779 RLFCKLRQKGLTPTVVTYNILIDGYCKA 806
RLF KL +KGL+PTVVTYN LIDGYCK
Sbjct: 837 RLFNKLARKGLSPTVVTYNTLIDGYCKG 864
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula] gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/807 (53%), Positives = 584/807 (72%), Gaps = 14/807 (1%)
Query: 4 LSQPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQK 63
L PELLDRITRLL+L R ++ NL+F +SD L DS+L++LRL+P A L FF LA++
Sbjct: 37 LPHPELLDRITRLLILNRPQSLHNLTFKYSDHLTDSLLRRLRLHPSACLSFFHLATQNSH 96
Query: 64 FRPNIKCYCKIVHILSRARMFDETRAFLYELVGL-CKNNYAGFLIWDELVRAYKEFAFSP 122
+RP+ Y ++HIL+ AR+F E L +L+ L C NNY + + + + YKEF F
Sbjct: 97 YRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNHVFSVYKEFGFCS 156
Query: 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQ 182
VFDM++K +A++GM K+AL+VFD M + G +P LRSC+ LL LV+ GEG VA++V++Q
Sbjct: 157 GVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQ 216
Query: 183 MMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242
++ GIVPDV+ CSIVVNA+C+ ++ A++ +++M G E NVVTYN L++GYV GD
Sbjct: 217 IVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGD 276
Query: 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYG 302
G +RVL E+G+SR VT T L +GYCK+ KM+EAE +LR ++E++ ++VDE YG
Sbjct: 277 FEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYG 336
Query: 303 VLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362
VL+DGYC++G++++A+R+ +EML+ GL++N++ICN+LI GYCKLGQVCEA+RV M DW
Sbjct: 337 VLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDW 396
Query: 363 NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEA 422
NL+PD +S+NTL+DGYCRE +++AF LC EML GI P+VVTYNT++KGL VG D+A
Sbjct: 397 NLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDA 456
Query: 423 LHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKG 482
LHLW +M++R V PNE+ CT+LD F GD A+ LW IL RGF K+T+ FNTMI G
Sbjct: 457 LHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISG 516
Query: 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPS 542
LCKMGK+ EA +FD+MKELG P+ ITYRTLSDGYCK GN++EAF+IK +MER
Sbjct: 517 LCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMER------ 570
Query: 543 MEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGM 602
+A+ SI+MYN LI FK R+L + DLL EMQT GL PN+VTYG LISGWCD
Sbjct: 571 ---QAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQK 627
Query: 603 LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK---- 658
L+KAF YF+MIE+GF+PNV +CSK+VS+L R +I EA + L KM+DFD +
Sbjct: 628 LDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSD 687
Query: 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718
+ + + ++AQKIA SLD+S + N +VYNI I G+CKSG + +AR + S L+ G
Sbjct: 688 KLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRG 747
Query: 719 FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAK 778
F PDNFTY TLIH + G+++EAF LRDEML+ L+PNI YN+L++GLC G +DRA+
Sbjct: 748 FLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQ 807
Query: 779 RLFCKLRQKGLTPTVVTYNILIDGYCK 805
RLF KL QKGL P VTYNILI YC+
Sbjct: 808 RLFYKLYQKGLVPNAVTYNILIGCYCR 834
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa] gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/684 (65%), Positives = 540/684 (78%), Gaps = 13/684 (1%)
Query: 127 MILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV 186
MILK+YA+KGM+KNALHVFDNMGKYG PSLRSCN LLSNLVK GE Y A+LVY+QM R+
Sbjct: 1 MILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRL 60
Query: 187 GIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGA 246
IVPDVFTC+I+VNAYCK +E+A++FV+EME LGFELN V+YNSL+DGYVSLGD+ GA
Sbjct: 61 DIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGA 120
Query: 247 KRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID 306
K VL++ EKG+ R VT T L KGYCKQ K+EEAE +LR M++ED V+VDEYAYG LID
Sbjct: 121 KGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALID 180
Query: 307 GYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRP 366
GYCKVGK+ +AIRV +EMLK GL+MNL +CNSLINGYCK GQV E +R+L CM +L+P
Sbjct: 181 GYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKP 240
Query: 367 DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLW 426
DS+S+ TLVDGYCR+ ++AF +C +MLR+GIEP+VVTYNTLLKGLCR GD +AL LW
Sbjct: 241 DSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLW 300
Query: 427 LMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKM 486
+ML+R V PNEVGYCTLLD LF GDF A+ LW++ILARG K+ FNTMI GLCKM
Sbjct: 301 HLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKM 360
Query: 487 GKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKE 546
G+M A++ F +M+ELGC P+ ITYRTLSDGYCKVGN+EEAFKIK ME+ EI PS+E
Sbjct: 361 GEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIE-- 418
Query: 547 AIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKA 606
MYN LI F S++++ L+DLLAEM T GL PN+VTYGALI+GWCD G L+KA
Sbjct: 419 -------MYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKA 471
Query: 607 FKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK----YMAS 662
F AYF+MI KGF+PNV ICSK+VS+L RLG+IDEAN+ LQKMVDFD V D + + +
Sbjct: 472 FSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNA 531
Query: 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722
+D KIA +LDESA +PN VVYNI +AG+CKSG V DARR F L F+PD
Sbjct: 532 DIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPD 591
Query: 723 NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782
NFTY TLIHG++A G +NEAFNLRDEM+ LVPNI TYN+L++GLC SG LDRA+RLF
Sbjct: 592 NFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFD 651
Query: 783 KLRQKGLTPTVVTYNILIDGYCKA 806
KL KGL P VVTYNILIDGYCK+
Sbjct: 652 KLHLKGLIPNVVTYNILIDGYCKS 675
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g19290 gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/810 (55%), Positives = 595/810 (73%), Gaps = 22/810 (2%)
Query: 6 QPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFR 65
+PELL+R++RLLVLGR++A+ +LS DFSD+LL+S+L++LRLNP+A L F LASKQQKFR
Sbjct: 42 RPELLERVSRLLVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFR 101
Query: 66 PNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF 125
P+ K YCK+VHILSRAR + +T+++L ELV L N++GF++W ELVR +KEF+FSPTVF
Sbjct: 102 PDYKAYCKMVHILSRARNYQQTKSYLCELVAL---NHSGFVVWGELVRVFKEFSFSPTVF 158
Query: 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185
DMILK+YA+KG++KNALHVFDNMG YG IPSL SCN LLSNLV+ GE +VAL VY+QM+
Sbjct: 159 DMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMIS 218
Query: 186 VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMEN-LGFELNVVTYNSLIDGYVSLGDLN 244
+ PDVFTCSIVVNAYC+ +++KA+ F KE E+ LG ELNVVTYNSLI+GY +GD+
Sbjct: 219 FEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVE 278
Query: 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVL 304
G RVL E+G+SR VTYT+L KGYCK+ MEEAE++ +KE+ ++ D++ YGVL
Sbjct: 279 GMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKK-LVADQHMYGVL 337
Query: 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364
+DGYC+ G++ +A+RV + M++ G+ N ICNSLINGYCK GQ+ EA+++ M DW+L
Sbjct: 338 MDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL 397
Query: 365 RPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424
+PD ++NTLVDGYCR + EA +LC +M ++ + P+V+TYN LLKG R+G + L
Sbjct: 398 KPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
LW MMLKR V +E+ TLL+ LF GDF A+KLW N+LARG +TIT N MI GLC
Sbjct: 458 LWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLC 517
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
KM K+ EA++I D + C P + TY+ LS GY KVGNL+EAF +K MER+
Sbjct: 518 KMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERK------- 570
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
I P+I+MYN LIS AFK R L + DL+ E++ GL P + TYGALI+GWC+ GM++
Sbjct: 571 --GIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMID 628
Query: 605 KAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD-FVPDLKYM--- 660
KA+ F+MIEKG + NV ICSK+ ++L RL KIDEA + LQK+VDFD +P + +
Sbjct: 629 KAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEF 688
Query: 661 --ASSAINVDAQKIAMSLDESA-RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717
AS+ + QKIA S++ S + L VPN +VYN+ IAG+CK+G + DAR++FS LL +
Sbjct: 689 LEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSS 748
Query: 718 G-FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDR 776
F PD +TY+ LIHG A GDIN+AF LRDEM ++PNI TYN+L+ GLC G +DR
Sbjct: 749 DRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDR 808
Query: 777 AKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
A+RL KL QKG+TP +TYN LIDG K+
Sbjct: 809 AQRLLHKLPQKGITPNAITYNTLIDGLVKS 838
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/810 (55%), Positives = 592/810 (73%), Gaps = 22/810 (2%)
Query: 6 QPELLDRITRLLVLGRFDAVDNLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFR 65
+PELL+R++RLLVLGR++A+ +LS DFSD+LL+S+L++LRLNP+A + F LASKQQKFR
Sbjct: 42 RPELLERVSRLLVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACVEIFNLASKQQKFR 101
Query: 66 PNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF 125
P+ K YCK+VHILSRAR + +T+++L ELV L N++GF++W ELVR +KEF+FSPTVF
Sbjct: 102 PDYKAYCKMVHILSRARNYGQTKSYLCELVAL---NHSGFVVWGELVRVFKEFSFSPTVF 158
Query: 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185
DMILK+YA+KGM+KNALHVFDNMGKYG IPSL SCN LLSNLVK GE +VAL VY+QM+
Sbjct: 159 DMILKVYAEKGMVKNALHVFDNMGKYGRIPSLLSCNSLLSNLVKKGENFVALHVYDQMIS 218
Query: 186 VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMEN-LGFELNVVTYNSLIDGYVSLGDLN 244
+ PDVFTCSIVVNAYC+ ++KA+ F KEM+N LG ELNVVT NSLI+GY +GD+
Sbjct: 219 FEVSPDVFTCSIVVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLINGYAMIGDVE 278
Query: 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVL 304
G RVL E+G+SR VT+T+L K YCK+ MEEAE + + E+ ++ D++ +GVL
Sbjct: 279 GMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKK-LVPDQHMHGVL 337
Query: 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364
IDGYC+ G++ +A+RV + M++ G+ N ICNSLINGYCK GQ+ EA+++L M DW+L
Sbjct: 338 IDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSL 397
Query: 365 RPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424
+PD ++NTLVDGYCR + EA +LC M ++ + P+V+TYN LLKG R+G + L
Sbjct: 398 KPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
LW MMLKR V NE+ TLL+ LF GDF A+KLW N+LARG +TIT N MI GLC
Sbjct: 458 LWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGLC 517
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
KM K+ EA++I D + C P++ TY+ LS GY VGNL+EAF +K+ ME
Sbjct: 518 KMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDF---------ME 568
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
K+ I P+I+MYN LIS AFK + L + DL+ E++ GL P + TYGALI+GWC+ GM++
Sbjct: 569 KKGIFPTIEMYNTLISGAFKYKHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMID 628
Query: 605 KAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD-FVPDLKYM--- 660
KA+ F+MIEKG + NV ICSK+ ++L RL K DEA + LQK+VDFD +P + +
Sbjct: 629 KAYATCFEMIEKGITLNVNICSKIANSLFRLDKFDEACLLLQKIVDFDLLLPGYQSLKEF 688
Query: 661 --ASSAINVDAQKIAMSLDESA-RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717
S+ + QKIA S++ S + L VPN +VYN+ IAG+CK+G +TDA+++FS LL +
Sbjct: 689 LEPSATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLTDAQKLFSDLLSS 748
Query: 718 G-FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDR 776
F PD +TY+ LIHG A GDIN+AFNLRDEM ++PNI TYN+L+ GLC G +DR
Sbjct: 749 DRFIPDEYTYTILIHGCAIDGDINKAFNLRDEMALKGIIPNIVTYNALIKGLCKLGNVDR 808
Query: 777 AKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
A+RL KL QKG TP +TYN LIDG K+
Sbjct: 809 AQRLLRKLPQKGTTPNAITYNTLIDGLIKS 838
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group] gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/800 (47%), Positives = 531/800 (66%), Gaps = 27/800 (3%)
Query: 9 LLDRITRLLVLGRFDAVDNL---SFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFR 65
LL R TRLL+L RF A + L S + LL + L+++RL+PDA+L F+LA R
Sbjct: 42 LLGRFTRLLLLHRFPAAERLLASSSPLTPALLQAALRRVRLDPDAALHLFRLAPS----R 97
Query: 66 PNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF 125
P++ + +++HIL+RAR F + RA L L + ++ L Y++F FS F
Sbjct: 98 PSLVSHAQLLHILARARRFHDARALLSSLPPHAEP------LFPHLAEVYRDFTFSAVSF 151
Query: 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185
D++L+ +A G L +AL+VFD MGK GC PSLRSCN LL+ LV++G+ +A +VY QM
Sbjct: 152 DLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRI 211
Query: 186 VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNG 245
G++PD FT +I+ AYC++ + +A++FV+EME +G E+N+V Y++++D Y +G
Sbjct: 212 AGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTED 271
Query: 246 AKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLI 305
A+R+LE KG+S VTYT L KGYCK +MEEAE +++ MKE D++VDE AYG++I
Sbjct: 272 ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI 331
Query: 306 DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLR 365
+GYC+ G++D+A RV NEM G+ +NL + N++ING CKLG++ E ++VL+ M D +R
Sbjct: 332 NGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMR 391
Query: 366 PDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHL 425
PD +S+NTL+DGYCRE M +AF +C M+R G+ + +TYNTLLKG C + +D+AL L
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451
Query: 426 WLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK 485
W +MLKR V PNE+ TLLD LF G A+ LW LARG KN ITFNT+I GLCK
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511
Query: 486 MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEK 545
+G+M EA+++ D+MKEL C P+ +TYRTL DGYCK+G L A + N ME
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMN---------KMEH 562
Query: 546 EAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNK 605
PS++M+N I+ F +++ + D+ +EM GL PN+VTYGALI+GWC G L++
Sbjct: 563 LGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHE 622
Query: 606 AFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665
A YF+M+ G +PNV ICS L+S + GK+DEAN+ LQK+V+ D +P S
Sbjct: 623 ACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIP-----GCSIS 677
Query: 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFT 725
++ KI+ +D A V++N++I G+CKSG + DA+ +F +L F PDNFT
Sbjct: 678 TIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFT 737
Query: 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785
YS+LIHG AA G I+EAF+LRD ML L PNI TYNSL+ GLC SG+L RA LF KL+
Sbjct: 738 YSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ 797
Query: 786 QKGLTPTVVTYNILIDGYCK 805
KG++P +TYN LID YCK
Sbjct: 798 SKGISPNGITYNTLIDEYCK 817
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 806 | ||||||
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.977 | 0.871 | 0.532 | 6.1e-229 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.870 | 0.773 | 0.282 | 2.1e-77 | |
| TAIR|locus:2165585 | 971 | AT5G57250 [Arabidopsis thalian | 0.923 | 0.766 | 0.272 | 3.2e-72 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.730 | 0.788 | 0.295 | 5.3e-72 | |
| TAIR|locus:2132937 | 704 | RPF5 "AT4G28010" [Arabidopsis | 0.673 | 0.771 | 0.303 | 8.9e-70 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.722 | 0.771 | 0.298 | 2.4e-69 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.935 | 0.824 | 0.265 | 3e-69 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.772 | 0.639 | 0.267 | 2.8e-68 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.817 | 0.863 | 0.269 | 9.2e-68 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.683 | 0.755 | 0.273 | 4.5e-66 |
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2209 (782.7 bits), Expect = 6.1e-229, P = 6.1e-229
Identities = 431/810 (53%), Positives = 576/810 (71%)
Query: 6 QPELLDRITRLLVLGRFDAVDNXXXXXXXXXXXXVLQKLRLNPDASLGFFQLASKQQKFR 65
+PELL+R++RLLVLGR++A+ + +L++LRLNP+A L F LASKQQKFR
Sbjct: 42 RPELLERVSRLLVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFR 101
Query: 66 PNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF 125
P+ K YCK+VHILSRAR + +T+++L ELV L N++GF++W ELVR +KEF+FSPTVF
Sbjct: 102 PDYKAYCKMVHILSRARNYQQTKSYLCELVAL---NHSGFVVWGELVRVFKEFSFSPTVF 158
Query: 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPXXXXXXXXXXXXVKNGEGYVALLVYEQMMR 185
DMILK+YA+KG++KNALHVFDNMG YG IP V+ GE +VAL VY+QM+
Sbjct: 159 DMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMIS 218
Query: 186 VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMEN-LGFELNVVTYNSLIDGYVSLGDLN 244
+ PDVFTCSIVVNAYC+ +++KA+ F KE E+ LG ELNVVTYNSLI+GY +GD+
Sbjct: 219 FEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVE 278
Query: 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVL 304
G RVL E+G+SR VTYT+L KGYCK+ MEEAE++ +KE+ ++ D++ YGVL
Sbjct: 279 GMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKK-LVADQHMYGVL 337
Query: 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364
+DGYC+ G++ +A+RV + M++ G+ N ICNSLINGYCK GQ+ EA+++ M DW+L
Sbjct: 338 MDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL 397
Query: 365 RPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424
+PD ++NTLVDGYCR + EA +LC +M ++ + P+V+TYN LLKG R+G + L
Sbjct: 398 KPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
LW MMLKR V +E+ TLL+ LF GDF A+KLW N+LARG +TIT N MI GLC
Sbjct: 458 LWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLC 517
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
KM K+ EA++I D + C P + TY+ LS GY KVGNL+EAF +K MER+
Sbjct: 518 KMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERK------- 570
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
I P+I+MYN LIS AFK R L + DL+ E++ GL P + TYGALI+GWC+ GM++
Sbjct: 571 --GIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMID 628
Query: 605 KAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFV-P---DLK-Y 659
KA+ F+MIEKG + NV ICSK+ ++L RL KIDEA + LQK+VDFD + P LK +
Sbjct: 629 KAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEF 688
Query: 660 MASSAIN-VDAQKIAMSLDESA-RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717
+ +SA + QKIA S++ S + L VPN +VYN+ IAG+CK+G + DAR++FS LL +
Sbjct: 689 LEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSS 748
Query: 718 G-FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDR 776
F PD +TY+ LIHG A GDIN+AF LRDEM ++PNI TYN+L+ GLC G +DR
Sbjct: 749 DRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDR 808
Query: 777 AKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
A+RL KL QKG+TP +TYN LIDG K+
Sbjct: 809 AQRLLHKLPQKGITPNAITYNTLIDGLVKS 838
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 204/722 (28%), Positives = 347/722 (48%)
Query: 77 ILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDM--ILKIYAQ 134
++++ + E R L GL K + G + EL P V+ +++ +
Sbjct: 182 MITKVSLLPEVRTLSALLHGLVKFRHFGLAM--ELFNDMVSVGIRPDVYIYTGVIRSLCE 239
Query: 135 KGMLKNALHVFDNMGKYGCIPXXXXXXXXXXXXVKNGEGYVALLVYEQMMRVGIVPDVFT 194
L A + +M GC K + + A+ + + + + PDV T
Sbjct: 240 LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVT 299
Query: 195 CSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTC 254
+V CK + E L+ + EM L F + +SL++G G + A +++
Sbjct: 300 YCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVV 359
Query: 255 EKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKV 314
+ G+S Y L CK K EAE + RM + + ++ Y +LID +C+ GK+
Sbjct: 360 DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG-LRPNDVTYSILIDMFCRRGKL 418
Query: 315 DEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTL 374
D A+ L EM+ TGL++++ NSLING+CK G + A+ + M + L P ++ +L
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 375 VDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCV 434
+ GYC + + +A RL EM +GI PS+ T+ TLL GL R G + +A+ L+ M + V
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 435 CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQK 494
PN V Y +++ +GD A + + +G +T ++ +I GLC G+ +EA+
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 495 IFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDM 554
D + + C N I Y L G+C+ G LEEA + M +R + + + +
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV----DLDLVC----- 649
Query: 555 YNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614
Y LI + K ++ LL EM GL P+ V Y ++I G +AF + MI
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709
Query: 615 EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD-LKYMASSAI----NVDA 669
+G PN + +++ LC+ G ++EA + KM VP+ + Y I VD
Sbjct: 710 NEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDM 769
Query: 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTL 729
QK A+ L + + N YN++I G C+ G + +A + + ++ G SPD TY+T+
Sbjct: 770 QK-AVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTM 828
Query: 730 IHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789
I+ D+ +A L + M + + P+ YN+L+ G C +GE+ +A L ++ ++GL
Sbjct: 829 INELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888
Query: 790 TP 791
P
Sbjct: 889 IP 890
|
|
| TAIR|locus:2165585 AT5G57250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 215/790 (27%), Positives = 368/790 (46%)
Query: 44 LRLNPDASLGFFQLASKQQK-FRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKN-N 101
++L P S G F L S + F P + + + L R + F+ F +L N N
Sbjct: 1 MKLYPRTSSGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININ 60
Query: 102 YAGFLI--WDEL-VRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVF----DNMGK---- 150
+ + I W L + Y++ + I+ + ML + +H F D+ K
Sbjct: 61 HRIYSIVSWAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLI 120
Query: 151 -------YGCIPXXXXXXXXXXXXVKNGEGYVALLVYEQMMRVGI-VP-DVFTCSIVVNA 201
+G P V+ GE A+ V E M + P D F CS V++
Sbjct: 121 LRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISG 180
Query: 202 YCKEKSMEKALDFVKEMENLGFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR 260
+CK E AL F + + G + N+VTY +L+ LG ++ + ++ ++G
Sbjct: 181 FCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEF 240
Query: 261 TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRV 320
V Y+ GY K + +A R M E+ + D +Y +LIDG K G V+EA+ +
Sbjct: 241 DCVFYSNWIHGYFKGGALVDALMQDREMVEKG-MNRDVVSYSILIDGLSKEGNVEEALGL 299
Query: 321 LNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCR 380
L +M+K G+E NL+ ++I G CK+G++ EA + + + D F + TL+DG CR
Sbjct: 300 LGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICR 359
Query: 381 ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVG 440
+ ++ AF + +M ++GI+PS++TYNT++ GLC G V EA + + V + +
Sbjct: 360 KGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEV-----SKGVVGDVIT 414
Query: 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMK 500
Y TLLD + +++ L + + N ++K MG EA ++ M
Sbjct: 415 YSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMP 474
Query: 501 ELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLIS 560
E+ P+ TY T+ GYCK G +EEA ++ N + K ++ ++ YN +I
Sbjct: 475 EMDLTPDTATYATMIKGYCKTGQIEEALEMFN---------ELRKSSVSAAV-CYNRIID 524
Query: 561 VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP 620
K L + ++L E+ GLY +I T L+ G + + +
Sbjct: 525 ALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDV 584
Query: 621 NVAICSKLVSTLCRLGKIDEA-NIFL---QKMVDFDFVPD-LKYMASSAINVDAQKIAMS 675
+ + + + LC+ G + A +++ +K + F LK + + ++DA + ++
Sbjct: 585 CLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSLDAYLLVVN 644
Query: 676 LDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735
E+ +L + + Y I+I G+CK G + A + S G + + TY++LI+G
Sbjct: 645 AGET--TLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQ 702
Query: 736 VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795
G + EA L D + I LVP+ TY L+ LC G A++L + KGL P ++
Sbjct: 703 QGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIII 762
Query: 796 YNILIDGYCK 805
YN ++DGYCK
Sbjct: 763 YNSIVDGYCK 772
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 183/619 (29%), Positives = 314/619 (50%)
Query: 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYV-SLGDLNGAKRVLEWTCE 255
+VV +Y + ++KAL V + GF V++YN+++D + S +++ A+ V + E
Sbjct: 139 LVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE 198
Query: 256 KGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD 315
+S TY L +G+C ++ A + +M E + + Y LIDGYCK+ K+D
Sbjct: 199 SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKID 257
Query: 316 EAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLV 375
+ ++L M GLE NL+ N +ING C+ G++ E VL M D ++NTL+
Sbjct: 258 DGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317
Query: 376 DGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435
GYC+E + +A + AEMLR G+ PSV+TY +L+ +C+ G+++ A+ M R +C
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKI 495
PNE Y TL+D KG A ++ + GF + +T+N +I G C GKM +A +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMY 555
+ MKE G P++++Y T+ G+C+ +++EA ++K RE++ EK I P Y
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVK-----REMV---EK-GIKPDTITY 488
Query: 556 NYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIE 615
+ LI + R DL EM +GL P+ TY ALI+ +C G L KA + + +M+E
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE 548
Query: 616 KGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP-DLKY--MASSAINVDAQKI 672
KG P+V S L++ L + + EA L K+ + VP D+ Y + + N++ + +
Sbjct: 549 KGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608
Query: 673 AMSL------------DESARSLCVPNY----VVYNIVIAGICKSGNVTDARRIFSALLL 716
+ D+ S+ N+ YNI+I G C++G++ A ++ ++
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVK 668
Query: 717 TGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDR 776
+GF T L+ G +NE ++ +L+ + LV G +D
Sbjct: 669 SGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDV 728
Query: 777 AKRLFCKLRQKGLTPTVVT 795
+ ++ + G P ++
Sbjct: 729 VLDVLAEMAKDGFLPNGIS 747
|
|
| TAIR|locus:2132937 RPF5 "AT4G28010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 171/564 (30%), Positives = 292/564 (51%)
Query: 118 FAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPXXXXXXXXXXXXVKNGEGYVAL 177
FAF+ +++LK + A+ + M + +P + E AL
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197
Query: 178 LVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGY 237
+ +M G + T I+++A+CK M++A+ F+KEM+ +G E ++V Y SLI G+
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257
Query: 238 VSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD 297
G+L+ K + + E+G S A+TY TL +G+CK +++EA + M E V +
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG-VRPN 316
Query: 298 EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLR 357
Y Y LIDG C VGK EA+++LN M++ E N + N +IN CK G V +A ++
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVE 376
Query: 358 CMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG--IEPSVVTYNTLLKGLCR 415
M RPD+ ++N L+ G C + D+ EA +L ML+ +P V++YN L+ GLC+
Sbjct: 377 LMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCK 436
Query: 416 VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTIT 475
+ +AL ++ +++++ + V LL+ GD A++LW I +N+ T
Sbjct: 437 ENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDT 496
Query: 476 FNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLME 535
+ MI G CK G + A+ + KM+ P++ Y L CK G+L++A++ L E
Sbjct: 497 YTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWR---LFE 553
Query: 536 RREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALIS 595
M+++ P + +N +I + K+ ++ S LL M GL P++ TY LI+
Sbjct: 554 E------MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLIN 607
Query: 596 GWCDAGMLNKAFKAYFD-MIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654
+ G L++A ++FD M++ GF P+ IC ++ G+ D+ ++K+VD D V
Sbjct: 608 RFLKLGYLDEAI-SFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIV 666
Query: 655 PD-------LKYMASSAINVDAQK 671
D + YM +S+ N+D K
Sbjct: 667 LDKELTCTVMDYMCNSSANMDLAK 690
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 178/596 (29%), Positives = 302/596 (50%)
Query: 65 RPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFA--FSP 122
+P+ ++ ++ S+ F A LYE + L F +++ K
Sbjct: 60 QPDDSAALRLFNLASKKPNFSPEPA-LYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGT 118
Query: 123 TVFDMILKIYAQKGMLKNALHVFDNM-GKYGCIPXXXXXXXXXXXXVKNGEGYVALLVYE 181
+ F ++++ YAQ + L V D M ++G P V + + +
Sbjct: 119 STFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHA 178
Query: 182 QMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLG 241
+M GI PDV T ++++ A C+ + A+ +++M + G + T+ +++ GY+ G
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 242 DLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAY 301
DL+GA R+ E E G S + V+ + G+CK+ ++E+A N ++ M +D D+Y +
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361
L++G CK G V AI +++ ML+ G + ++ NS+I+G CKLG+V EA VL M
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421
+ P++ ++NTL+ C+E + EA L + +GI P V T+N+L++GLC +
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481
A+ L+ M + P+E Y L+D L +KG A+ + + G ++ IT+NT+I
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILP 541
G CK K EA++IFD+M+ G N +TY TL DG CK +E+A + LM++
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ---LMDQ----- 530
Query: 542 SMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG 601
M E P YN L++ + ++ D++ M + G P+IVTYG LISG C AG
Sbjct: 531 -MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 602 MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA-NIFLQKMVDFDFVPD 656
+ A K + KG + + ++ L R K EA N+F + + + PD
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPD 645
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 211/794 (26%), Positives = 348/794 (43%)
Query: 41 LQKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKN 100
L L L+P +L F S+ +++ ++ Y ++ +L ++ C +
Sbjct: 96 LFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDS 155
Query: 101 NYAGFLIWDELVRAYKEFAFSPTV------FDMILKIYAQKGMLKNALHVFDNMGKYGCI 154
+ D + K+ F ++ +L A+ G++ V+ M +
Sbjct: 156 VGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVC 215
Query: 155 PXXXXXXXXXXXXVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDF 214
P K G A +++ G+ PD FT + ++ YC+ K ++ A
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 215 VKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK 274
EM G N V Y LI G ++ A + + T TYT L K C
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335
Query: 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLL 334
+ EA N+++ M EE + + + Y VLID C K ++A +L +ML+ GL N++
Sbjct: 336 SERKSEALNLVKEM-EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVI 394
Query: 335 ICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEM 394
N+LINGYCK G + +A V+ M L P++ ++N L+ GYC+ ++ +A + +M
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKM 453
Query: 395 LRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDF 454
L + + P VVTYN+L+ G CR G+ D A L +M R + P++ Y +++D L
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 513
Query: 455 YGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTL 514
A L++++ +G N + + +I G CK GK+ EA + +KM CLPN +T+ L
Sbjct: 514 EEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNAL 573
Query: 515 SDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDL 574
G C G L+EA L+E + M K + P++ LI K +
Sbjct: 574 IHGLCADGKLKEA----TLLEEK-----MVKIGLQPTVSTDTILIHRLLKDGDFDHAYSR 624
Query: 575 LAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634
+M + G P+ TY I +C G L A M E G SP++ S L+
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684
Query: 635 LGKIDEANIFLQKMVDFDFVP-------------DLKY--MASSAINVDAQKIAMSLDES 679
LG+ + A L++M D P ++KY S + A M D
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTV 744
Query: 680 ARSL-------CVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-GFSPDNFTYSTLIH 731
L PN Y +I GIC+ GN+ A ++F + G SP ++ L+
Sbjct: 745 VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804
Query: 732 GYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791
+ NEA + D+M+ + +P + + L+ GL GE +R +F L Q G
Sbjct: 805 CCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYE 864
Query: 792 TVVTYNILIDGYCK 805
+ + I+IDG K
Sbjct: 865 DELAWKIIIDGVGK 878
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.8e-68, P = 2.8e-68
Identities = 175/653 (26%), Positives = 320/653 (49%)
Query: 168 VKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNV 227
+K E +LLV +M +G+ D T S++++ K ++ + A V EM + G +
Sbjct: 290 IKRLEDAKSLLV--EMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKP 347
Query: 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287
Y+ I G + AK + + G+ A Y +L +GYC++ + + +L
Sbjct: 348 YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVE 407
Query: 288 MKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLG 347
MK+ + +++ Y YG ++ G C G +D A ++ EM+ +G N++I +LI + +
Sbjct: 408 MKKRN-IVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 348 QVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN 407
+ +A RVL+ M + + PD F +N+L+ G + M EA EM+ G++P+ TY
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526
Query: 408 TLLKGLCRVGDVDEALHLWLMMLKRC-VCPNEVGYCT-LLDILFNKGDFYGAVKLWNNIL 465
+ G + A ++ ++ C V PN+V CT L++ KG A + +++
Sbjct: 527 AFISGYIEASEFASA-DKYVKEMRECGVLPNKV-LCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 466 ARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLE 525
+G + T+ ++ GL K K+ +A++IF +M+ G P++ +Y L +G+ K+GN++
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQ 644
Query: 526 EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP 585
+A I M +E + P++ +YN L+ +S E+ +LL EM GL+P
Sbjct: 645 KA---------SSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA-NIF 644
N VTY +I G+C +G L +AF+ + +M KG P+ + + LV CRL ++ A IF
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Query: 645 -------LQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697
F+ + + + + + + +D S PN V YNI+I
Sbjct: 756 GTNKKGCASSTAPFNALINWVFKFGKT-ELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDY 814
Query: 698 ICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757
+CK GN+ A+ +F + P TY++L++GY +G E F + DE + + P+
Sbjct: 815 LCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPD 874
Query: 758 IATYNSLVSGLCNSGELDRA----KRLFCKLR-QKGLTPTVVTYNILIDGYCK 805
Y+ +++ G +A ++F K G ++ T L+ G+ K
Sbjct: 875 HIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 183/679 (26%), Positives = 323/679 (47%)
Query: 129 LKIYAQKGMLKNALHVFDNMGKYGCIPXXXXXXXXXXXXVKNGEGYVALLVYEQMMRVGI 188
+K Y +KG ++ A++VF+ M Y C P V +G A VY +M GI
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
Query: 189 VPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKR 248
PDV++ +I + ++CK AL + M + G E+NVV Y +++ G+
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202
Query: 249 VLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGY 308
+ G+S T+ L + CK+ ++E E +L ++ + V+ + + Y + I G
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG-VLPNLFTYNLFIQGL 261
Query: 309 CKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDS 368
C+ G++D A+R++ +++ G + +++ N+LI G CK + EA+ L M + L PDS
Sbjct: 262 CQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDS 321
Query: 369 FSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLM 428
+++NTL+ GYC+ + A R+ + + G P TY +L+ GLC G+ + AL L+
Sbjct: 322 YTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE 381
Query: 429 MLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGK 488
L + + PN + Y TL+ L N+G A +L N + +G TFN ++ GLCKMG
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC 441
Query: 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI 548
+++A + M G P+I T+ L GY K++N +E IL M +
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGY------STQLKMENALE---ILDVMLDNGV 492
Query: 549 VPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFK 608
P + YN L++ K+ + +++ M G PN+ T+ L+ C L++A
Sbjct: 493 DPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALG 552
Query: 609 AYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668
+M K +P+ L+ C+ G +D A +KM + V + I+
Sbjct: 553 LLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAF 612
Query: 669 AQKIAMSLDESA-RSL---CV-PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723
+K+ +++ E + + C+ P+ Y +++ G CK+GNV + ++ GF P
Sbjct: 613 TEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSL 672
Query: 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783
T +I+ + EA + M++ LVP N++ + E+ K +
Sbjct: 673 TTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAV--NTICD--VDKKEVAAPKLVLED 728
Query: 784 LRQKGLTPTVVTYNILIDG 802
L +K T Y +L DG
Sbjct: 729 LLKKSCI-TYYAYELLFDG 746
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 155/567 (27%), Positives = 284/567 (50%)
Query: 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK 256
+++ Y + + + +A + + + GF +++ N+LI V +G + A V +
Sbjct: 170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229
Query: 257 GISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDE 316
G+ T + CK KME+ L +++E+ V D Y LI Y G ++E
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG-VYPDIVTYNTLISAYSSKGLMEE 288
Query: 317 AIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVD 376
A ++N M G + N++ING CK G+ AK V M L PDS ++ +L+
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348
Query: 377 GYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCP 436
C++ D+ E ++ ++M + + P +V +++++ R G++D+AL + + + + P
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408
Query: 437 NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496
+ V Y L+ KG A+ L N +L +G + +T+NT++ GLCK + EA K+F
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 468
Query: 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN 556
++M E P+ T L DG+CK+GNL+ A E+ M+++ I + YN
Sbjct: 469 NEMTERALFPDSYTLTILIDGHCKLGNLQNAM---------ELFQKMKEKRIRLDVVTYN 519
Query: 557 YLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK 616
L+ K ++ + ++ A+M + + P ++Y L++ C G L +AF+ + +MI K
Sbjct: 520 TLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK 579
Query: 617 GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD-LKY--MASSAINVDAQKIA 673
P V IC+ ++ CR G + FL+KM+ FVPD + Y + + + A
Sbjct: 580 NIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKA 639
Query: 674 MSLD---ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLI 730
L E + VP+ YN ++ G C+ + +A + ++ G +PD TY+ +I
Sbjct: 640 FGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMI 699
Query: 731 HGYAAVGDINEAFNLRDEMLKINLVPN 757
+G+ + ++ EAF + DEML+ P+
Sbjct: 700 NGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LN69 | PPR50_ARATH | No assigned EC number | 0.5530 | 0.9776 | 0.8716 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 806 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-34
Identities = 131/567 (23%), Positives = 240/567 (42%), Gaps = 67/567 (11%)
Query: 203 CK-EKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRT 261
CK ++++++A F K + N T+N L+ S D++GA RVL E G+
Sbjct: 416 CKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVL 321
YTT LI K GKVD V
Sbjct: 472 CKLYTT------------------------------------LISTCAKSGKVDAMFEVF 495
Query: 322 NEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381
+EM+ G+E N+ +LI+G + GQV +A M N++PD FN L+ +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 382 CDMTEAFRLCAEML--RQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEV 439
+ AF + AEM I+P +T L+K G VD A ++ M+ + +
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKM 499
Y ++ KGD+ A+ +++++ +G + + F+ ++ G + +A +I
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
Query: 500 KELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLI 559
++ G ++Y +L N ++A +E E + S++ + P++ N LI
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKA------LELYEDIKSIK---LRPTVSTMNALI 726
Query: 560 SVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFS 619
+ + +L +++L+EM+ +GL PN +TY L+ + E G
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786
Query: 620 PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF-VPDLK-YMASSAINVDAQKIAMSLD 677
PN+ +C + LC L + ++A + +V FD P ++ S A+ V + I+
Sbjct: 787 PNLVMCRCITG-LC-LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT- 843
Query: 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG 737
+P V + V+ + + T R+ L ++ S STL+ G+
Sbjct: 844 -------LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY- 895
Query: 738 DINEAFNLRDEMLKINLVPNIATYNSL 764
D AF+L +E + +VP++ ++
Sbjct: 896 DP-RAFSLLEEAASLGVVPSV-SFKKS 920
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 72/285 (25%), Positives = 123/285 (43%), Gaps = 24/285 (8%)
Query: 537 REILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISG 596
+L +++ + +Y LIS KS ++ ++ ++ EM G+ N+ T+GALI G
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516
Query: 597 WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656
AG + KAF AY M K P+ + + L+S + G +D A FD + +
Sbjct: 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---------FDVLAE 567
Query: 657 LKYMAS----SAINVDA-QKIAMSLDESARSLCVPNYV----------VYNIVIAGICKS 701
+K I V A K + + R+ V + VY I + +
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 702 GNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATY 761
G+ A I+ + G PD +S L+ GD+++AF + + K + +Y
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 762 NSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
+SL+ N+ +A L+ ++ L PTV T N LI C+
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 1e-25
Identities = 141/599 (23%), Positives = 252/599 (42%), Gaps = 83/599 (13%)
Query: 94 LVGLCKNNYAGFLIWDELVRAYKEFAFSPTVF-----DMILKIYAQKGMLKNALHVFDNM 148
L LC+ A +E R S + +L ++ + G L +A +VF M
Sbjct: 92 LFRLCEWKRA----VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM 147
Query: 149 GKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208
+ L S N L+ K G AL +Y +M+ G+ PDV+T V+ ++
Sbjct: 148 PER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL------RTC 197
Query: 209 EKALDFVKEME------NLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTA 262
D + E GFEL+V N+LI YV GD+ A+ V ++ R
Sbjct: 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF----DRMPRRDC 253
Query: 263 VTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLN 322
+++ + GY + + E + M+ E V D +I +G +
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 323 EMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCREC 382
++KTG +++ +CNSLI Y LG EA++V M D+ S+ ++ GY +
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNG 368
Query: 383 DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYC 442
+A A M + + P +T ++L +GD+D + L + ++ + V
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 443 TLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL 502
L+++ A+++++NI K+ I++ ++I GL + EA F +M L
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQML-L 483
Query: 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILP-----SMEKEAIVPS--IDMY 555
PN +T + L +I LM +EI + + +P+ +D+Y
Sbjct: 484 TLKPNSVTL---------IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 556 -----------------------NYLISVAFKSRELTSL-VDLLAEMQTMGLYPNIVTYG 591
N L++ + + S+ V+L M G+ P+ VT+
Sbjct: 535 VRCGRMNYAWNQFNSHEKDVVSWNILLT-GYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 592 ALISGWCDAGMLNKAFKAYFDMIEKGFS--PNVAICSKLVSTLCRLGKIDEANIFLQKM 648
+L+ +GM+ + + YF +E+ +S PN+ + +V L R GK+ EA F+ KM
Sbjct: 594 SLLCACSRSGMVTQGLE-YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-25
Identities = 116/488 (23%), Positives = 220/488 (45%), Gaps = 48/488 (9%)
Query: 118 FAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVAL 177
F V + ++ +Y + G + +A VFD M + CI S N ++S +NGE L
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGL 273
Query: 178 LVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL----GFELNVVTYNSL 233
++ M + + PD+ T + V++A C+ E+ +EM GF ++V NSL
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISA-CELLGDER---LGREMHGYVVKTGFAVDVSVCNSL 329
Query: 234 IDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDD 293
I Y+SLG A++V + ++ AV++T + GY K ++A M E+D+
Sbjct: 330 IQMYLSLGSWGEAEKVFS----RMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDN 384
Query: 294 VIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAK 353
V DE ++ +G +D +++ + GL +++ N+LI Y K + +A
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 354 RVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGL 413
V + D S+ +++ G EA +ML ++P+ VT L
Sbjct: 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
Query: 414 CRVGDVDEALHLWLMMLKRCV-----CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARG 468
R+G + + +L+ + PN LLD+ G A WN +
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYA---WNQFNSHE 551
Query: 469 FYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAF 528
K+ +++N ++ G GK + A ++F++M E G P+ +T+ +L + G + +
Sbjct: 552 --KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 529 KIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588
+ + ME EK +I P++ Y ++ + ++ +LT + + M + P+
Sbjct: 610 EYFHSME--------EKYSITPNLKHYACVVDLLGRAGKLTEAYNFI---NKMPITPDPA 658
Query: 589 TYGALISG 596
+GAL++
Sbjct: 659 VWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-23
Identities = 95/418 (22%), Positives = 171/418 (40%), Gaps = 81/418 (19%)
Query: 385 TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTL 444
EAFR + P++ T+N L+ D+D AL + L +++
Sbjct: 423 KEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRV-LRLVQ------------- 464
Query: 445 LDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGC 504
G + + T+I K GK+ ++F +M G
Sbjct: 465 ---------------------EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 505 LPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK 564
N+ T+ L DG + G + +AF +M + + P + +V +N LIS +
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP----DRVV-----FNALISACGQ 554
Query: 565 SRELTSLVDLLAEM--QTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV 622
S + D+LAEM +T + P+ +T GAL+ +AG +++A + Y + E
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARS 682
+ + V++ + G D A M PD + SA+ VD A LD++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD--EVFFSAL-VDVAGHAGDLDKAFEI 671
Query: 683 LCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEA 742
L DAR+ G +YS+L+ + + +A
Sbjct: 672 L---------------------QDARK-------QGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 743 FNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800
L +++ I L P ++T N+L++ LC +L +A + ++++ GL P +TY+IL+
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 6e-21
Identities = 93/422 (22%), Positives = 185/422 (43%), Gaps = 22/422 (5%)
Query: 120 FSPTVFDM--ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVAL 177
F P + M +L ++ + GML +A +FD M + +L S ++ LV G A
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAF 209
Query: 178 LVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGY 237
++ +M G + T +++ A S + G + +LID Y
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 238 VSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD 297
GD+ A+ V + EK T V + ++ GY EEA + M++ V +D
Sbjct: 270 SKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSID 324
Query: 298 EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLR 357
++ + ++I + ++ ++ A + +++TG ++++ +L++ Y K G++ +A+ V
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 358 CMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG 417
M NL S+N L+ GY T+A + M+ +G+ P+ VT+ +L G
Sbjct: 385 RMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 418 DVDEALHLWLMMLK-RCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITF 476
++ ++ M + + P + Y ++++L +G A + + R +K T+
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM----IRRAPFKPTVNM 496
Query: 477 NTMIKGLCKMGKMTEAQKIFDKMKELGCLPNII-TYRTLSDGYCKVGNLEEAFKIKNLME 535
+ C++ K E + K G P + Y L + Y G EA K+ ++
Sbjct: 497 WAALLTACRIHKNLELGR-LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 536 RR 537
R+
Sbjct: 556 RK 557
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-20
Identities = 124/575 (21%), Positives = 239/575 (41%), Gaps = 81/575 (14%)
Query: 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK-VDEAIRVLNEMLKTG 328
+ C ++E+A +L M +E V VDE AY L C+ + V+E RV + L +
Sbjct: 59 RALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSH 116
Query: 329 LEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAF 388
+ + + N++++ + + G++ A V M + +L FS+N LV GY + EA
Sbjct: 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEAL 172
Query: 389 RLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDIL 448
L ML G+ P V T+ +L+ + D+ + ++ R +V L +
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITM 231
Query: 449 FNK-GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507
+ K GD A +++ + R + I++N MI G + G+ E ++F M+EL P+
Sbjct: 232 YVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 508 IIT-----------------------------------YRTLSDGYCKVGNLEEAFKIKN 532
++T +L Y +G+ EA K+ +
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 533 LMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGA 592
ME ++ + A++ + N L A ++ A M+ + P+ +T +
Sbjct: 348 RMETKDA---VSWTAMISGYE-KNGLPDKA---------LETYALMEQDNVSPDEITIAS 394
Query: 593 LISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD 652
++S G L+ K + KG V + + L+ + ID+A + + D
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 653 FVPDLKYMASSAINVDA-------QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705
+ +A +N +++ ++L PN V ++ + G +
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLK--------PNSVTLIAALSACARIGALM 506
Query: 706 DARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765
+ I + +L TG D F + L+ Y G +N A+N + K ++ ++N L+
Sbjct: 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILL 561
Query: 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800
+G G+ A LF ++ + G+ P VT+ L+
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 4e-19
Identities = 131/659 (19%), Positives = 278/659 (42%), Gaps = 64/659 (9%)
Query: 161 NCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFV----- 215
N L L +G+ AL + E M + + D + + C+ K + V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 216 KEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275
+LG L N+++ +V G+L A V E R ++ L GY K
Sbjct: 114 SSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA 165
Query: 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLI 335
+EA + RM V D Y + ++ + + V +++ G E+++ +
Sbjct: 166 GYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 336 CNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEML 395
N+LI Y K G V A+ V M R D S+N ++ GY + E L M
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 396 RQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFY 455
++P ++T +++ +GD + ++K + +L+ + + G +
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLS 515
A K++ +R K+ +++ MI G K G +A + + M++ P+ IT ++
Sbjct: 341 EAEKVF----SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 516 DGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS--IDMYNYLISVAFKSRELTSLVD 573
+G+L+ K+ L ER+ ++ +V + I+MY+ K + + ++
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLI----SYVVVANALIEMYS-------KCKCIDKALE 445
Query: 574 LLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKA--YFDMIEKGFSPN-------VAI 624
+ + +++++ ++I+G + N+ F+A +F + PN ++
Sbjct: 446 VFHNIPE----KDVISWTSIIAGLR---LNNRCFEALIFFRQMLLTLKPNSVTLIAALSA 498
Query: 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLC 684
C+++ + +C GK A++ + F+P+ + +++ + M+ + +
Sbjct: 499 CARIGALMC--GKEIHAHVLRTGIGFDGFLPN------ALLDLYVRCGRMNYAWNQFNSH 550
Query: 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFN 744
+ V +NI++ G G + A +F+ ++ +G +PD T+ +L+ + G + +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 745 LRDEM-LKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802
M K ++ PN+ Y +V L +G+L A K+ +TP + L++
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 84/407 (20%), Positives = 160/407 (39%), Gaps = 51/407 (12%)
Query: 273 CKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMN 332
C +H+ EA + ++ + Y L++ + + V + +G E +
Sbjct: 100 CGRHR--EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157
Query: 333 LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392
+ N ++ + K G + +A+R+ M + NL S+ T++ G + EAF L
Sbjct: 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFR 213
Query: 393 EMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKG 452
EM G + T+ +L+ +G L +LK V + C L+D+ G
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 453 DFYGA-----------VKLWNNILA--------------------RGFYKNTITFNTMIK 481
D A WN++LA G + TF+ MI+
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILP 541
++ + A++ + G +I+ L D Y K G +E+A + + M R+ ++
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393
Query: 542 SMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG 601
+N LI+ T V++ M G+ PN VT+ A++S +G
Sbjct: 394 -------------WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 602 MLNKAFKAYFDMIE-KGFSPNVAICSKLVSTLCRLGKIDEANIFLQK 647
+ + ++ + M E P + ++ L R G +DEA +++
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 3e-17
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCK 520
+ +T+NT+I G CK GK+ EA K+F++MK+ G PN+ TY L DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 2e-16
Identities = 23/50 (46%), Positives = 38/50 (76%)
Query: 756 PNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805
P++ TYN+L+ G C G+++ A +LF +++++G+ P V TY+ILIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 6e-16
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 366 PDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCR 415
PD ++NTL+DGYC++ + EA +L EM ++GI+P+V TY+ L+ GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 3e-14
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 721 PDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN 770
PD TY+TLI GY G + EA L +EM K + PN+ TY+ L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-14
Identities = 90/425 (21%), Positives = 164/425 (38%), Gaps = 69/425 (16%)
Query: 407 NTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILA 466
N+ L+ LC G +++AL L M + V +E Y L + K ++ + L+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 467 RGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEE 526
N M+ + G++ A +F KM E ++ ++ L GY K G +E
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDE 170
Query: 527 AFK--------------------------IKNLMERREILPSMEKEAIVPSIDMYNYLIS 560
A I +L RE+ + + +D+ N LI+
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 561 VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP 620
+ K ++ S + M + +++ A+ISG+ + G + + +F M E P
Sbjct: 231 MYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680
++ + ++S LG + M + K ++D S
Sbjct: 287 DLMTITSVISACELLGDERLG----------------REMHGYVV-----KTGFAVDVS- 324
Query: 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDIN 740
V N +I G+ +A ++FS + + D +++ +I GY G +
Sbjct: 325 ---------VCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPD 371
Query: 741 EAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800
+A M + N+ P+ T S++S G+LD +L +KGL VV N LI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 801 DGYCK 805
+ Y K
Sbjct: 432 EMYSK 436
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-12
Identities = 69/336 (20%), Positives = 145/336 (43%), Gaps = 30/336 (8%)
Query: 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKV-GNLEEAFKIKNLMERREILP 541
L + G++ + + + M++ G L Y CK ++EAF+ L+
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------ 433
Query: 542 SMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG 601
P++ +N L+SV S+++ + +L +Q GL + Y LIS +G
Sbjct: 434 -------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 602 MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA----NIFLQKMVDFDFVPDL 657
++ F+ + +M+ G NV L+ R G++ +A I K V D V
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV--- 543
Query: 658 KYMASSAINVDAQKIAMS------LDESARSLCV-PNYVVYNIVIAGICKSGNVTDARRI 710
+ ++ I+ Q A+ + A + + P+++ ++ +G V A+ +
Sbjct: 544 --VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 711 FSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN 770
+ + Y+ ++ + GD + A ++ D+M K + P+ +++LV +
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 771 SGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
+G+LD+A + R++G+ V+Y+ L+ A
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 2e-12
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 190 PDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGY 237
PDV T + +++ YCK+ +E+AL EM+ G + NV TY+ LIDG
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 226 NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK 274
+VVTYN+LIDGY G + A ++ ++GI TY+ L G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 84/415 (20%), Positives = 163/415 (39%), Gaps = 33/415 (7%)
Query: 396 RQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVG---YCTLLDILFNKG 452
I S V+ + ++ L G EAL L+ ++ CP + Y L++
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEIL--EAGCPFTLPASTYDALVEACIALK 137
Query: 453 DFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYR 512
++ ++ + GF + N ++ K G + +A+++FD+M E N+ ++
Sbjct: 138 SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193
Query: 513 TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLV 572
T+ G GN EAF + M E E V + L S A ++L V
Sbjct: 194 TIIGGLVDAGNYREAFALFREM--WEDGSDAEPRTFVVMLRASAGLGS-ARAGQQLHCCV 250
Query: 573 DLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTL 632
G+ + ALI + G + A + M EK + +++
Sbjct: 251 ------LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGY 300
Query: 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCV----PNY 688
G +EA +M D D ++ S I + ++ + + A + + P
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 689 VVYNIVIAGI-CKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRD 747
+V N + + K G + DAR +F + +++ LI GY G +A + +
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFE 415
Query: 748 EMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ-KGLTPTVVTYNILID 801
M+ + PN T+ +++S SG ++ +F + + + P + Y +I+
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 6e-12
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 297 DEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCK 345
D Y LIDGYCK GKV+EA+++ NEM K G++ N+ + LI+G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-11
Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 2/218 (0%)
Query: 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187
++K A G + A V+ + +Y + +++ + G+ AL +Y+ M + G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAK 247
+ PD S +V+ ++KA + +++ G +L V+Y+SL+ + + A
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 248 RVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDG 307
+ E + T T L C+ +++ +A +L MK + + Y +L+
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVA 763
Query: 308 YCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCK 345
+ D + +L++ + G++ NL++C + G C
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 332 NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCR 380
+++ N+LI+GYCK G+V EA ++ M ++P+ ++++ L+DG C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 401 PSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLD 446
P VVTYNTL+ G C+ G V+EAL L+ M KR + PN Y L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 7e-11
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYA 734
P+ V YN +I G CK G V +A ++F+ + G P+ +TYS LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 263 VTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310
VTY TL GYCK+ K+EEA + MK+ + + Y Y +LIDG CK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 7e-10
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634
P++VTY LI G+C G + +A K + +M ++G PNV S L+ LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 70/347 (20%), Positives = 146/347 (42%), Gaps = 55/347 (15%)
Query: 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187
++ +Y++ G +++A VFD M + + + N +L+ +G AL +Y +M G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAK 247
+ D FT SI++ + + +E A + GF L++V +L+D
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD------------ 368
Query: 248 RVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDG 307
Y K +ME+A N+ RM ++ + ++ LI G
Sbjct: 369 -----------------------LYSKWGRMEDARNVFDRMPRKNLI-----SWNALIAG 400
Query: 308 YCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG-DWNLRP 366
Y G+ +A+ + M+ G+ N + ++++ G + + + M + ++P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
Query: 367 DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLW 426
+ + +++ RE + EA+ A + R +P+V + LL CR + + L L
Sbjct: 461 RAMHYACMIELLGREGLLDEAY---AMIRRAPFKPTVNMWAALLTA-CR---IHKNLELG 513
Query: 427 LMMLKRCVC--PNEVG-YCTLLDILFNKGDFYGAVKLWNNILARGFY 470
+ ++ P ++ Y LL++ + G A K+ + +G
Sbjct: 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 8e-09
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 397 QGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMM 429
+G++P VVTYNTL+ GLCR G VDEA+ L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 467 RGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMK 500
+G + +T+NT+I GLC+ G++ EA ++ D+M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 155 PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCK 204
P + + N L+ K G+ AL ++ +M + GI P+V+T SI+++ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 297 DEYAYGVLIDGYCKVGKVDEAIRVLNEM 324
D Y LIDG C+ G+VDEA+ +L+EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLME 535
G P+++TY TL DG C+ G ++EA ++ + ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 474 ITFNTMIKGLCKMGKMTEAQKIFDKMKELGC 504
+T+N++I G CK GK+ EA ++F +MKE G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 44/94 (46%)
Query: 506 PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKS 565
P+++TY TL DGYCK G +EEA K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALK------------------------------------ 24
Query: 566 RELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599
L EM+ G+ PN+ TY LI G C
Sbjct: 25 --------LFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 718 GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEM 749
G PD TY+TLI G G ++EA L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 404 VTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNE 438
VTYNTL+ GLC+ G V+EAL L+ M +R + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 474 ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI 508
+T+NT+I GLCK G++ EA ++F +MKE G P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 369 FSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV 403
++NTL+DG C+ + EA L EM +GIEP V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 256 KGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMK 289
KG+ VTY TL G C+ +++EA +L M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 187 GIVPDVFTCSIVVNAYCKEKSMEKALDFVKEME 219
G+ PDV T + +++ C+ +++A++ + EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 753 NLVPNIATYNSLVSGLCNSGELDRAKRLF 781
L P++ TYN+L+ GLC +G +D A L
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 299 YAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMN 332
Y LIDG CK G+V+EA+ + EM + G+E +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 787 KGLTPTVVTYNILIDGYCKA 806
KGL P VVTYN LIDG C+A
Sbjct: 1 KGLKPDVVTYNTLIDGLCRA 20
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 7e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 363 NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEM 394
L+PD ++NTL+DG CR + EA L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 581 MGLYPNIVTYGALISGWCDAGMLNKAFK 608
GL P++VTY LI G C AG +++A +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVE 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV 622
VTY LI G C AG + +A + + +M E+G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 299 YAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL 329
Y LI GYCK GK++EA+ + EM + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 5e-05
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 684 CVPNYVVYNIVIAGICKSGNVTDARRIF 711
P+ V YN +I G+C++G V +A +
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 11/206 (5%)
Query: 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187
+L +Y + G + A + F++ K + S N LL+ V +G+G +A+ ++ +M+ G
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEME-NLGFELNVVTYNSLIDGYVSLGDLNGA 246
+ PD T ++ A + + + L++ ME N+ Y ++D G L A
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 247 KRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID 306
+ + I+ + L +E E + + E D V Y +L +
Sbjct: 645 YNFIN---KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCN 699
Query: 307 GYCKVGKVDEAIRVLNEMLKTGLEMN 332
Y GK DE RV M + GL ++
Sbjct: 700 LYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 193 FTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNV 227
T + +++ CK +E+AL+ KEM+ G E +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 404 VTYNTLLKGLCRVGDVDEALHLWLMMLKRCV 434
VTYN+L+ G C+ G ++EAL L+ M ++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 222 GFELNVVTYNSLIDGYVSLGDLNGAKRVLE 251
G + +VVTYN+LIDG G ++ A +L+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793
TYN+L+ GLC +G ++ A LF +++++G+ P V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 73/340 (21%), Positives = 128/340 (37%), Gaps = 57/340 (16%)
Query: 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGC---LPNIITYRTLSDGYCKVGNLEEA 527
K+ ++ + I+ L G+ EA ++F ++ E GC LP TY L +E
Sbjct: 85 KSGVSLCSQIEKLVACGRHREALELF-EILEAGCPFTLP-ASTYDAL---------VEAC 133
Query: 528 FKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNI 587
+K++ + + +E P M N ++ + K L L EM N+
Sbjct: 134 IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NL 189
Query: 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQK 647
++G +I G DAG +AF + +M E G ++ LG
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA--------- 240
Query: 648 MVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707
A ++ K + V + V +I K G++ DA
Sbjct: 241 ------------RAGQQLHCCVLKTGV----------VGDTFVSCALIDMYSKCGDIEDA 278
Query: 708 RRIFSALLLTGFSPDNFT--YSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765
R +F + P+ T +++++ GYA G EA L EM + + T++ ++
Sbjct: 279 RCVFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805
L+ AK+ L + G +V L+D Y K
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 328 GLEMNLLICNSLINGYCKLGQVCEAKRVLRCM 359
GL+ +++ N+LI+G C+ G+V EA +L M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 263 VTYTTLTKGYCKQHKMEEAENMLRRMKEED 292
VTY +L GYCK K+EEA + + MKE+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 20/210 (9%)
Query: 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187
++ +Y++ G +++A +VFD M + I S N L++ +G G A+ ++E+M+ G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEM-ENLGFELNVVTYNSLIDGYVSLGDLNGA 246
+ P+ T V++A E+ + + M EN + + Y +I+ G L+ A
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 247 KRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEE-----AENMLRRMKEEDDVIVDEYAY 301
++ T + L C+ HK E AE + E+ + Y
Sbjct: 482 YAMIR---RAPFKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLN------NY 531
Query: 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEM 331
VL++ Y G+ EA +V+ + + GL M
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789
TYNSL+SG C +G+L+ A LF ++++KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGF 618
VTY +LISG+C AG L +A + + +M EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVK 169
++ ++ Y +KG ++ AL +F+ M K G P++ + + L+ L K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 369 FSFNTLVDGYCRECDMTEAFRLCAEMLRQGI 399
++N+L+ GYC+ + EA L EM +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 193 FTCSIVVNAYCKEKSMEKALDFVKEMENLGF 223
T + +++ YCK +E+AL+ KEM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINL 754
TY++LI GY G + EA L EM + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 263 VTYTTLTKGYCKQHKMEEAENMLRRMKEED 292
VTY TL G CK ++EEA + + MKE
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 298 EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLE 330
Y L+ K G D A+ VL EM +GL+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 758 IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791
+ TYN+L+ L +G+ D A + +++ GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758
TY+TLI G G + EA L EM + + P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 403 VVTYNTLLKGLCRVGDVDEALHLWLMMLKR 432
+ TYN LL L + GD D AL + M
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 473 TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLP 506
T+N ++ L K G A + ++MK G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 158 RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDV 192
+ N L+ L K G AL ++++M GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 806 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.44 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.92 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.57 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.39 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.37 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.37 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.27 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.22 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.2 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.13 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.04 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.71 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.26 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.24 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.14 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.91 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.9 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.75 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.7 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.59 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.28 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.21 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.18 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.12 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.76 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.52 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.41 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.39 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.38 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.16 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.07 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.0 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.0 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.5 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.32 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.31 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.19 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.04 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.99 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.8 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.59 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.71 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.5 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.71 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.9 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.74 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.41 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.64 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.89 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.61 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.36 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.81 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.62 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.56 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.19 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.06 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.29 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.02 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.85 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 84.85 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 84.22 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.92 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.66 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.61 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.6 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 81.07 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.74 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.71 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.39 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.37 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.16 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-83 Score=733.71 Aligned_cols=674 Identities=21% Similarity=0.317 Sum_probs=632.5
Q ss_pred ChHHHHHHHHhc--CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHH
Q 037510 33 SDDLLDSVLQKL--RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDE 110 (806)
Q Consensus 33 ~~~~~~~vl~~~--~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 110 (806)
++...+.++..+ ...+..|+.+|+.+. ..+.+|+..+|..+++.+.+.+.++.+..++..++..
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------- 115 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS------------- 115 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-------------
Confidence 333344444433 347888999999876 4578899999999999999999999999998877653
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
+...+..+++.++..|++.|+++.|.++|+.|.+ ||+.+||.++.+|++.|++++|+.+|++|...|+.|
T Consensus 116 ------~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 116 ------HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred ------CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 2345567889999999999999999999999986 799999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
|..||+.++.+|++.+++..+.+++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|.. ||..+|+++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 79999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|+++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 262 GYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 999999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
+|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.
T Consensus 341 ~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 341 EAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred HHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999997 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037510 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIIT 510 (806)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (806)
+.|..|+..+++.++++|++.|++++|.++|++|.+ +|..+|++++.+|++.|+.++|..+|++|.+ ++.||..|
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t 491 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVT 491 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhH
Confidence 999999999999999999999999999999999974 6889999999999999999999999999986 58999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY 590 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 590 (806)
|+.++.+|++.|+.+.+.+++..+ .+.++.++..+++.|+.+|.+.|++++|.++|+++ .||..+|
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~---------~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~ 557 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHV---------LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSW 557 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHH---------HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhH
Confidence 999999999999999999999999 78899999999999999999999999999999987 6799999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCChhhhhhhhhhhhH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV-DFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~~~~~~~~ 669 (806)
+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.++.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~--------------- 622 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT--------------- 622 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999 56665
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
|+..+|++++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++
T Consensus 623 ----------------P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 623 ----------------PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred ----------------CchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 488899999999999999999999999983 7899999999999999999999999999999
Q ss_pred HHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 750 LKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 750 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
.+ +.| +...|..|...|...|++++|.++.+.|.++|+.++..
T Consensus 684 ~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 684 FE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred Hh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 88 677 56677778889999999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-79 Score=699.87 Aligned_cols=654 Identities=19% Similarity=0.253 Sum_probs=621.3
Q ss_pred CCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHH
Q 037510 64 FRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALH 143 (806)
Q Consensus 64 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (806)
..++..+++.+++.|++.|++++|..++.++... +..++..+|..+++.|.+.+.++.|..
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-------------------g~~~~~~~~~~ll~~~~~~~~~~~a~~ 107 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQEL-------------------RVPVDEDAYVALFRLCEWKRAVEEGSR 107 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-------------------CCCCChhHHHHHHHHHhhCCCHHHHHH
Confidence 4567788999999999999999999999988642 456677889999999999999999999
Q ss_pred HHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037510 144 VFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGF 223 (806)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 223 (806)
++..+.+.+..+++..+|+++..|++.|+.+.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999995 58999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHH
Q 037510 224 ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGV 303 (806)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 303 (806)
.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~ 258 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNA 258 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 58899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCC
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECD 383 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 383 (806)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+||.++.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037510 384 MTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNN 463 (806)
Q Consensus 384 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (806)
+++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.
T Consensus 339 ~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 339 WGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999996 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhh
Q 037510 464 ILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSM 543 (806)
Q Consensus 464 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 543 (806)
+.+.|+.++..++++++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m--------- 481 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM--------- 481 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999964 68889999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 037510 544 EKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA 623 (806)
Q Consensus 544 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 623 (806)
.. +..||..+|+.++.+|.+.|..+.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 43 5899999999999999999999999999999999999999999999999999999999999999887 67999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
+|+.++.+|++.|+.++|.++|++|.+.|+.| |..||+.++.+|++.|+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-------------------------------d~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNP-------------------------------DEVTFISLLCACSRSGM 604 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------------CcccHHHHHHHHhhcCh
Confidence 99999999999999999999999999988765 88899999999999999
Q ss_pred hhhHHHHHHHHH-HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 704 VTDARRIFSALL-LTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 704 ~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
+++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|....+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999 56999999999999999999999999999999983 79999999999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHH-HHhhh
Q 037510 783 KLRQKGLTPTVVTYNIL-IDGYC 804 (806)
Q Consensus 783 ~m~~~g~~p~~~~~~~l-i~~~~ 804 (806)
++.+ +.|+...+..+ ...|+
T Consensus 682 ~l~~--l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 682 HIFE--LDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHh--hCCCCcchHHHHHHHHH
Confidence 9988 78876555554 44554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=610.32 Aligned_cols=548 Identities=20% Similarity=0.307 Sum_probs=497.6
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037510 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGF-ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYT 266 (806)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (806)
..++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 456777888999999999999999999999999885 56788888999999999999999999999875 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 037510 267 TLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKL 346 (806)
Q Consensus 267 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 346 (806)
.++.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 037510 347 GQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLR--QGIEPSVVTYNTLLKGLCRVGDVDEALH 424 (806)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 424 (806)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 5789999999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037510 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGC 504 (806)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 504 (806)
+|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 037510 505 LPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY 584 (806)
Q Consensus 505 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 584 (806)
.||..+|+.++.+|++.|++++|.++|+.| ...+..|+..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM---------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDI---------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH---------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999 77788999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhh
Q 037510 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664 (806)
Q Consensus 585 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 664 (806)
||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +++++|..+.+.+...+.
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------- 818 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------- 818 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc-----------
Confidence 9999999999999999999999999999999999999999999986543 246666655444332210
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFN 744 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 744 (806)
+......+..++|..+|++|++.|+.||..||+.++.+++..+..+.+..
T Consensus 819 ------------------------------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~ 868 (1060)
T PLN03218 819 ------------------------------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR 868 (1060)
T ss_pred ------------------------------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH
Confidence 01111223456799999999999999999999999988888999999999
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 745 LRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 745 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
+++.|...+..|+..+|++|++++++. .++|..++++|.+.|+.|+..
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999988888888999999999998543 478999999999999999986
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=601.71 Aligned_cols=547 Identities=21% Similarity=0.294 Sum_probs=366.1
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH
Q 037510 154 IPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGI-VPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNS 232 (806)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (806)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+++.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34556666666666677777777777777766664 34555666666666666777777776666653 66677777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG 312 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 312 (806)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777776677777777777777777777777777777665 66667777777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh--CCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD--WNLRPDSFSFNTLVDGYCRECDMTEAFRL 390 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 390 (806)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777667777777777777777777777777777777654 45666777777777777777777777777
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037510 391 CAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFY 470 (806)
Q Consensus 391 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (806)
|++|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC
Q 037510 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP 550 (806)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 550 (806)
|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++| ...++.|
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM---------~~~Gi~P 752 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM---------KRLGLCP 752 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HHcCCCC
Confidence 7777777777777777777777777777766666677777777777777777777777777766 5566667
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
|..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +++++|.++.+.+...+ + ..
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~ 820 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GR 820 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cc
Confidence 777777777777777777777777777777777777777777665443 23444444433333210 0 00
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.....+..++|..+|++|.+.|+.| |..+|+.++.++++.+....+..+
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~P-------------------------------d~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLP-------------------------------TMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCC-------------------------------CHHHHHHHHHHhcccccHHHHHHH
Confidence 1111122345777777777766554 666777777666666667777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 711 FSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 711 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
++.|...+..|+..+|++|++++++. .++|+.++++|.+.|+.|+..
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77666666666667777777766332 256777777777777776653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=551.94 Aligned_cols=476 Identities=21% Similarity=0.258 Sum_probs=455.6
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 037510 155 PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG-IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSL 233 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (806)
.+..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 234 IDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
+.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+. |..||..+|+.++.++++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999976 89999999999999999999999999999988 899999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAE 393 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 393 (806)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|. ++|..+||.+|.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 46899999999999999999999999999
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 037510 394 MLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT 473 (806)
Q Consensus 394 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (806)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHH
Q 037510 474 ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSID 553 (806)
Q Consensus 474 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (806)
.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|. ...++.|+..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~--------~~~g~~p~~~ 463 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS--------ENHRIKPRAM 463 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH--------HhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999993 3468999999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP-NVAICSKLVSTL 632 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 632 (806)
+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+. .| +..+|..+++.|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHH
Confidence 9999999999999999999998765 57899999999999999999999999999999764 44 577999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
++.|++++|.+++++|.+.|+.++
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999999999999998654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-62 Score=542.57 Aligned_cols=475 Identities=19% Similarity=0.294 Sum_probs=415.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSL 339 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (806)
++..+|+.+|.++.+.|++++|+++|+.|....+..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45667888888888888888888888888876557788888999999998888888899999999888888899999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCH
Q 037510 340 INGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 419 (806)
+.+|++.|++++|.++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999998886 4788899999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKM 499 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 499 (806)
+.+.+++..+.+.|..||..+++.++++|++.|++++|.++|++|.. +|..+||+++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999988863 58889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 037510 500 KELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQ 579 (806)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 579 (806)
.+.|+.||..||+.++.+|++.|++++|.+++..| .+.+..|+..+|+.|+.+|++.|++++|.++|++|.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m---------~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL---------IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH---------HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 88888999999999999999999999999999888 778888899999999999999999999999998886
Q ss_pred HCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCChh
Q 037510 580 TMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD-FDFVPDLK 658 (806)
Q Consensus 580 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 658 (806)
.||..+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.
T Consensus 388 ----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---- 459 (697)
T PLN03081 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---- 459 (697)
T ss_pred ----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----
Confidence 4688899999999999999999999999999889999999999999999999999999999999875 4554
Q ss_pred hhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037510 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGD 738 (806)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 738 (806)
|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|+..|+
T Consensus 460 ---------------------------p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 460 ---------------------------PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred ---------------------------CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 47778999999999999999999888765 577888899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 739 INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 739 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
++.|...++++.+ +.| +..+|..|+.+|++.|++++|.+++++|.++|+.+
T Consensus 510 ~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 510 LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999888875 566 46788999999999999999999999999888763
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=389.37 Aligned_cols=709 Identities=16% Similarity=0.078 Sum_probs=403.2
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhH--------------HH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIW--------------DE 110 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~--------------~~ 110 (806)
..++..|+..++.+... .+.+...+..++.++...|++++|...+..++...+.+....... ..
T Consensus 172 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 172 ENRFDEARALIDEVLTA--DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566666666665422 233445566666666666666666666666655443322110000 00
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
+.......+.++.........+...|++++|+..|+.+.+.++. +...+..+...+...|++++|...|+++.+.. +.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~ 327 (899)
T TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PN 327 (899)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 00111112233334444444555667777777777766665422 23344455556666777777777777666543 22
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.++|+++.+..+ .+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44555566666667777777777776666553 33555666666667777777777777776665432 34555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
.+...|++++|++.++.+.+.. +........++..+.+.|++++|..+++.+.... +.+..++..+...|...|+++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 482 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLA 482 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHH
Confidence 6666777777777776666542 1223344455566666677777777766666542 335556666666666667777
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
+|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+. .+..++..+...+.+.|+.++|...++++.
T Consensus 483 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 483 KAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776665543 34445556666666666777777777766665432 245556666666666667777776666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037510 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIIT 510 (806)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (806)
... +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...++.+.+.. +.+...
T Consensus 561 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 561 ELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 542 2344555666666666677777777666666542 3455666666666666677777777666666553 334556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY 590 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 590 (806)
+..+..++...|++++|...++.+ .. ..+.+...+..++..+...|++++|.++++.+.+.+ +.+...+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRA---------LE-LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---------Hh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 666666666667777776666655 11 122345566666666666666666666666666553 3345555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh---
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV--- 667 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~--- 667 (806)
..+...+...|++++|.+.|+++.+.+ |+..++..++.++.+.|++++|.+.++++.+..+..............
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 666666666666667766666666642 333555566666666666666666666666543221000000011100
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLR 746 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 746 (806)
+.......+..... ..++++.+++.++..+...|+ .+|+..++++.+ ..|+. .++..++.++...|++++|.+++
T Consensus 785 ~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 785 DYDKAIKHYRTVVK-KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00111111111110 112345555666666666666 556666666655 34443 24555566666666666666666
Q ss_pred HHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 747 DEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 747 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+++++.+. .++.++..++.+|.+.|+.++|.+++++|+
T Consensus 861 ~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66665331 155566666666666666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=383.32 Aligned_cols=727 Identities=14% Similarity=0.041 Sum_probs=594.1
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhH--------------HH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIW--------------DE 110 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~--------------~~ 110 (806)
..+++.|...|+-+.... +.+..++..++.++...|++++|..++..++...+......... ..
T Consensus 138 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 138 LGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred cCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 468999999999886432 23456788999999999999999999999987655432211111 11
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
+.......+.++.++..++..+...|++++|...++.+.+..+. +...+......+...|++++|...|+++.+.+..
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~- 293 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE- 293 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-
Confidence 12222335667788889999999999999999999999887543 4455555666778899999999999999886422
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+..... .+...+..+..
T Consensus 294 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 371 (899)
T TIGR02917 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGE 371 (899)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 23445556677889999999999999998864 44677788899999999999999999999988654 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
.+.+.|++++|.+.|+++.+. .+.+...+..+...+...|++++|.+.++.+.+.... .......++..+.+.|+++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 999999999999999999875 3446677888889999999999999999999887543 4456677888999999999
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
+|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998753 6678899999999999999999999999998864 2355677888899999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037510 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIIT 510 (806)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (806)
... +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 864 3477889999999999999999999999998874 4567788889999999999999999999998765 567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY 590 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 590 (806)
|..++.++...|++++|...++.+. .. .+.+...+..++..+.+.|++++|...++++.+.. +.+..++
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLL---------AL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------Hh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 9999999999999999999999882 22 23456778889999999999999999999998863 4457889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh---h
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN---V 667 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~---~ 667 (806)
..++..+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...++++...++.++.. ....... .
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHHCC
Confidence 999999999999999999999999874 5677888889999999999999999999999887554221 1111111 1
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLR 746 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 746 (806)
+.......+..... ..+.+..++..++..|...|+.++|.+.|+++.+ ..|+ ..+++.++..+...|+ .+|+.++
T Consensus 751 ~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 751 NTAEAVKTLEAWLK-THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 22222222333222 2356788999999999999999999999999998 4565 4689999999999999 8899999
Q ss_pred HHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 747 DEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 747 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
+++.+. .| ++..+..++.++...|++++|.++++++.+.+.. +..++..+..++++
T Consensus 827 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 827 EKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 999984 45 6677888999999999999999999999986543 78888888877764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-29 Score=295.21 Aligned_cols=640 Identities=14% Similarity=0.065 Sum_probs=427.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhh
Q 037510 71 YCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGK 150 (806)
Q Consensus 71 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (806)
....+++....++.+.|.+.|..+....+ -+++++..+++.+.+.|+.++|.+.+++..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p--------------------~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~ 90 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP--------------------NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ 90 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC--------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 44556666777777777777776655432 2356666677777777777777777777776
Q ss_pred cCCCcChhhH----------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChhHHHH
Q 037510 151 YGCIPSLRSC----------------NCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVF-TCSIVVNAYCKEKSMEKALD 213 (806)
Q Consensus 151 ~~~~~~~~~~----------------~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 213 (806)
..+. +...+ ..+...+...|++++|+..|+++.+.+ +|+.. ............|+.++|++
T Consensus 91 ~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 91 LAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred hCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHH
Confidence 6532 22221 223445667777777777777776543 22221 11111111223477777777
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------C---hhhHHHHHHHHHh
Q 037510 214 FVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR----------------T---AVTYTTLTKGYCK 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~---~~~~~~li~~~~~ 274 (806)
.++++.+.. +.+...+..+...+...|+.++|.+.++++....... + ...+...+..+-.
T Consensus 169 ~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 169 QLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 777777663 3355666777777777777777777777775532100 0 0011111111222
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
....+.|...+.+.... ...|+.. .......+...|++++|+..|++.++..+. +...+..+...|.+.|++++|+.
T Consensus 248 ~~~~~~A~~~L~~~~~~-~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~ 324 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQ-LADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVA 324 (1157)
T ss_pred chHHHHHHHHHHHHHHh-ccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 22344555555554433 1222211 123345667788899999999888876433 67788888888888999999999
Q ss_pred HHHHHhhCCCCCCh---hcHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCH
Q 037510 355 VLRCMGDWNLRPDS---FSFN------------TLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 355 ~~~~~~~~~~~~~~---~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 419 (806)
.|++..+.. |+. ..|. .....+.+.|++++|...|+++++... .+...+..+...+...|++
T Consensus 325 ~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 325 QFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 988877653 321 1121 223456678899999999998887632 2455677788888889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------CcHHHHHHHHHHHHhcCCHHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFY--------KNTITFNTMIKGLCKMGKMTE 491 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~ 491 (806)
++|++.|+++++.. +.+...+..+...|. .++.++|...++.+...... .....+..+...+...|++++
T Consensus 402 ~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 402 AAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999888753 234556666666664 45778888887665432100 011234456677788899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 037510 492 AQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSL 571 (806)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 571 (806)
|+..+++..+.. +.+...+..+...+.+.|++++|...++.+ ... .+.+...+..+...+...++.++|
T Consensus 480 A~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a---------l~~-~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 480 AAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL---------AQQ-KPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------HHc-CCCCHHHHHHHHHHHHhCCCHHHH
Confidence 999999988875 445677788888899999999999998877 221 122444455555666778889999
Q ss_pred HHHHHHHHHCCCCCCHh---------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 572 VDLLAEMQTMGLYPNIV---------TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 572 ~~~~~~~~~~g~~p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
...++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+...+.+.|++++|+
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 88887764332222211 123456678889999999998872 2456667788889999999999999
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
..++++++..+ .+..++..++..|...|++++|++.++++.+ ..|+
T Consensus 624 ~~y~~al~~~P--------------------------------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~ 669 (1157)
T PRK11447 624 AAYQRVLTREP--------------------------------GNADARLGLIEVDIAQGDLAAARAQLAKLPA--TAND 669 (1157)
T ss_pred HHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCC
Confidence 99999988753 2677888999999999999999999998887 6676
Q ss_pred HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCC
Q 037510 723 NF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLV--P---NIATYNSLVSGLCNSGELDRAKRLFCKLR-QKGLTP 791 (806)
Q Consensus 723 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p 791 (806)
.. ++..++.++...|++++|.+++++++...-. | +...+..+...+...|++++|+..+++.. ..|+.|
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 54 6778889999999999999999999874211 1 12456667788899999999999999865 345544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-29 Score=291.83 Aligned_cols=658 Identities=13% Similarity=0.027 Sum_probs=475.9
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTV 124 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 124 (806)
+++++.|...+.-+... -+-++..+..++.++.+.|+.++|...++.+.+..|++..... +...+.-...+...
T Consensus 41 ~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~----~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 41 THREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS----SRTTMLLSTPEGRQ 114 (1157)
T ss_pred hCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH----HHHHHHhcCCchhh
Confidence 56899999888877632 2234677889999999999999999999999988665432211 11111222334445
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR-SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC 203 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 203 (806)
...+.+.+.+.|++++|++.|+.+.+.++. +.. ............|+.++|+..|+++.+.. +-+...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 567778899999999999999999986532 322 22122222234699999999999999864 335667778889999
Q ss_pred hcCChhHHHHHHHHHHHcCCCc----------------C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh
Q 037510 204 KEKSMEKALDFVKEMENLGFEL----------------N---VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVT 264 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~----------------~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 264 (806)
..|+.++|++.++++.+..... + ...+...+..+-.....+.|...++........|+..
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~- 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR- 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-
Confidence 9999999999999987642110 0 0011111222222223445556665554432223222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHH-------
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMN-LLIC------- 336 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------- 336 (806)
.......+...|++++|+..|++..+. .+.+...+..+...+.+.|++++|+..|++..+...... ...+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 123456778899999999999999886 344778899999999999999999999999998654321 1111
Q ss_pred -----HHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 037510 337 -----NSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLK 411 (806)
Q Consensus 337 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 411 (806)
......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|++.++... .+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 223456778999999999999998874 45667788899999999999999999999998632 23455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 037510 412 GLCRVGDVDEALHLWLMMLKRCVC--------PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGL 483 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 483 (806)
.+. .++.++|..+++.+...... .....+..+...+...|++++|++.|+++++.. +.+...+..+...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 56789999888765432100 012345567788899999999999999999874 44677788899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
.+.|++++|...++++.+.. +.+...+..+...+...+++++|...++.+......+.+...........+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998764 44566666666667789999999999887632111111111000011122334667788
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANI 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 643 (806)
..|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|...|++++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999872 24556677788889999999999999999999863 4468889999999999999999999
Q ss_pred HHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC--CC
Q 037510 644 FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF--SP 721 (806)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p 721 (806)
.++.+.+... .+..++..+..++...|++++|.++++++++... .|
T Consensus 659 ~l~~ll~~~p--------------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 659 QLAKLPATAN--------------------------------DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhccCC--------------------------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9998876532 2455777788899999999999999999988421 12
Q ss_pred ---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 037510 722 ---DNFTYSTLIHGYAAVGDINEAFNLRDEMLK-INLVP 756 (806)
Q Consensus 722 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 756 (806)
+...+..++..+...|++++|++.|++++. .|+.|
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 123666778999999999999999999975 45554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-25 Score=244.66 Aligned_cols=650 Identities=12% Similarity=0.027 Sum_probs=447.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHh
Q 037510 36 LLDSVLQKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAY 115 (806)
Q Consensus 36 ~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 115 (806)
+....+...+.+++.|+..|+-+.... +.+..++..++.++...|++++|...+++.++..|++
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n-------------- 111 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD-------------- 111 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--------------
Confidence 445555555688999999999987433 2236778999999999999999999999988764422
Q ss_pred hccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHH--------HHHcCChHHHHHHHHHHHHCC
Q 037510 116 KEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSN--------LVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~A~~~~~~m~~~~ 187 (806)
...+..+ +..++.++|+.+++++.+..+. +..++..+... |.+.+ +|...++ .....
T Consensus 112 ------~~~~~~L----a~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~ 176 (987)
T PRK09782 112 ------ARLERSL----AAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFA 176 (987)
T ss_pred ------HHHHHHH----HHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhC
Confidence 3333333 2228999999999999987643 45566555555 65554 4444444 33333
Q ss_pred CCCCHhHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCChhhH
Q 037510 188 IVPDVFTCSIV-VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVS-LGDLNGAKRVLEWTCEKGISRTAVTY 265 (806)
Q Consensus 188 ~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (806)
..|+..+.... ...|.+.|++++|++++.++.+.+ +.+......|..+|.. .++ +.+..+++. .++.++..+
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~ 250 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSR 250 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHH
Confidence 44455555555 889999999999999999999987 3456667778788888 477 888887553 233588899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCC-hhHHHHHHHHH
Q 037510 266 TTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD-EAIRVLNEMLKTGLEMN-LLICNSLINGY 343 (806)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 343 (806)
..++..|.+.|+.++|.++++++.......|+..++.-+ +.+.+... .|..-|.+ + ..++ ....-.++..+
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVL 323 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654444666555544 33433332 11111111 0 1111 11233347778
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDG--YCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
.+.++++-++++.. +.|.... ..++. ....+...++...++.|.+.. +-+.....-+.-...+.|+.++
T Consensus 324 ~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 324 LKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHH
Confidence 88888886666532 2333332 22222 223466777777777777652 1133444444445567888888
Q ss_pred HHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC---hhHHHHH-------------------------HHHHHHCCCCC
Q 037510 422 ALHLWLMMLKR-C-VCPNEVGYCTLLDILFNKGD---FYGAVKL-------------------------WNNILARGFYK 471 (806)
Q Consensus 422 a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~ 471 (806)
|..+++..... + ...+......++..|.+.+. ...+..+ +...... .++
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~ 473 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSP 473 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCC
Confidence 98888888763 1 22234444567777777655 2222222 2222221 133
Q ss_pred --cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC
Q 037510 472 --NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV 549 (806)
Q Consensus 472 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 549 (806)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++.+ ... .
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka---------~~~--~ 539 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKI---------SLH--D 539 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHH---------hcc--C
Confidence 56677777777766 78888999888887763 66555444555567899999999999876 222 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
|....+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++|...+++.++. .|+...+..+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 334445667778888999999999999988764 222333333444455669999999999999876 46788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
.++.+.|++++|...+++++...+. +...++.++.++...|++++|++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd--------------------------------~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPN--------------------------------NSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999887533 67788889999999999999999
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 710 IFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 710 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
.|++.++ ..|+.. .+..++.++...|++++|+..++++++ +.|+. .+.........+..+++.|.+-+++...
T Consensus 665 ~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~- 739 (987)
T PRK09782 665 MLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT- 739 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999998 778764 888999999999999999999999998 56744 5666777778888888888888877765
Q ss_pred CCCCCHh
Q 037510 788 GLTPTVV 794 (806)
Q Consensus 788 g~~p~~~ 794 (806)
+.|+..
T Consensus 740 -~~~~~~ 745 (987)
T PRK09782 740 -FSFDSS 745 (987)
T ss_pred -cCccch
Confidence 555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-24 Score=241.80 Aligned_cols=581 Identities=13% Similarity=0.010 Sum_probs=412.3
Q ss_pred HHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhH
Q 037510 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEK 210 (806)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 210 (806)
.+...|++++|+..|+...+..+. +..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ +++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChh
Confidence 344569999999999999998765 5888999999999999999999999999885 45544444444333 88999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHH
Q 037510 211 ALDFVKEMENLGFELNVVTYNSLIDG--------YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL-TKGYCKQHKMEEA 281 (806)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a 281 (806)
|..+++++.+.. +-+..++..+... |.+. +.|.+.++ .....+.|+..+.... ...|.+.|++++|
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 999999999875 3345555555554 5555 55555555 3333333344444444 8999999999999
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCK-VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
+++++++.+.+ +.+..-...+..+|.. .++ +++..+++. .+.-++.....+++.|.+.|+.++|..+++++.
T Consensus 202 i~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 202 DTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999873 3345556667777777 466 778777554 233588899999999999999999999999876
Q ss_pred hCCCC-CChhcHHH------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 037510 361 DWNLR-PDSFSFNT------------------------------LVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTL 409 (806)
Q Consensus 361 ~~~~~-~~~~~~~~------------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 409 (806)
..... |...+|-- ++..+.+.++++.+.++. ++.|.... ..
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~ 346 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LE 346 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HH
Confidence 54211 33332221 134444555555444331 13333332 22
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCcHHHHHHHHHHHHh
Q 037510 410 LKG--LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILAR-G-FYKNTITFNTMIKGLCK 485 (806)
Q Consensus 410 l~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~ 485 (806)
+.. ....+...++...++.|... .+-+......+.-...+.|+.++|.++++..... + -..+......++..+..
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 222 22346677777777777765 2335566666666777899999999999988773 1 12233444566777766
Q ss_pred cCC---HHHHHHH-------------------------HHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037510 486 MGK---MTEAQKI-------------------------FDKMKELGCLP--NIITYRTLSDGYCKVGNLEEAFKIKNLME 535 (806)
Q Consensus 486 ~g~---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (806)
.+. ..++..+ +...... .++ +...|..+..++.. ++.++|...+....
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 655 2333222 1112211 134 56777777777766 78888888776552
Q ss_pred hcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 037510 536 RREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIE 615 (806)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 615 (806)
...|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++.++
T Consensus 504 -----------~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 504 -----------QRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred -----------HhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12244433444555567899999999999887654 45555566777778889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 616 KGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
.+ +++...+..+...+.+.|++++|...+++.++.. |+...+..++
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---------------------------------P~~~a~~~LA 616 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---------------------------------PSANAYVARA 616 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------------------------CCHHHHHHHH
Confidence 64 3333444444445556699999999999988764 4566889999
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCC
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
.++.+.|++++|+..|++.++ ..|+.. .++.++.++...|++++|++.++++++ +.| ++..+..+..++...|+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999 789875 889999999999999999999999999 556 67788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 037510 774 LDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 774 ~~~A~~~~~~m~~~g~~p~~ 793 (806)
+++|...+++..+ +.|+.
T Consensus 693 ~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 693 MAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHh--cCCCC
Confidence 9999999999988 67764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-21 Score=197.37 Aligned_cols=663 Identities=16% Similarity=0.117 Sum_probs=454.8
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHH-----------cCC
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQ-----------KGM 137 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-----------~g~ 137 (806)
..|..++.-+.+.|++++...+|+.....+........ ... -..++.+...|.. ...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~--~~~----------~~a~~~laay~s~~a~kek~~~~k~e~ 109 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVK--SDQ----------MKALDILAAYYSQLAMKEKKKDEKDEL 109 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchH--HHH----------HHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 56788899999999999999999887522111110000 000 0112222222211 122
Q ss_pred hhhHHHHHHHhhhcCCCcC-hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHH
Q 037510 138 LKNALHVFDNMGKYGCIPS-LRSCNCLLSNLVKNGE--GYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDF 214 (806)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 214 (806)
+..|.-+|+..-+.....+ ....... .|...|. .+.|...|...++.. ++|.-.+-.-.......|++..|+.+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 3445555555443321111 1111111 2223333 588999999888753 34444443334445577899999999
Q ss_pred HHHHHHcC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 037510 215 VKEMENLG--FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK---QHKMEEAENMLRRMK 289 (806)
Q Consensus 215 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~ 289 (806)
|....... .+||+. -.+..++.+.|+.+.|...|....+.++ -++.++..|.-.-.. ...+..+..++...-
T Consensus 187 yk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay 263 (1018)
T KOG2002|consen 187 YKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY 263 (1018)
T ss_pred HHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 99976653 334443 3345677899999999999999998653 233333333322222 234567777777776
Q ss_pred hcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 290 EEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLE--MNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 290 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
...+ -++...+.|.+.|.-.|+++.+..+...+...... .-...|..+..+|-..|++++|...|.+..+.. ++
T Consensus 264 ~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d 339 (1018)
T KOG2002|consen 264 KENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--ND 339 (1018)
T ss_pred hhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CC
Confidence 6533 46667888999999999999999999988876321 123458889999999999999999998877653 44
Q ss_pred h--hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCChhhH
Q 037510 368 S--FSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG----DVDEALHLWLMMLKRCVCPNEVGY 441 (806)
Q Consensus 368 ~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 441 (806)
. ..+.-+...+.+.|+++.+...|+...+.. +.+..|...|...|...+ ..+.|..++....+.- +.|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 3 445567889999999999999999998862 335567777777777665 5677777777777753 4477788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH----HCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNIL----ARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL---GCLPNI------ 508 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------ 508 (806)
..+...+....-+.. +..|..+. ..+..+.+...|.+...+...|.+++|...|...... ...+|.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 887777765544443 77666554 3455577888999999999999999999999988654 112222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 588 (806)
.+-..+....-..++.+.|.+.|..+.. . .+.-+..|-.++......+...+|...+.+..... ..++.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilk---------e-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILK---------E-HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH---------H-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 2233455666677899999999998732 1 22224555555555555678889999998887643 44556
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhCCCCC
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEK-GFSPNVAICSKLVSTLCR------------LGKIDEANIFLQKMVDFDFVP 655 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p 655 (806)
.++.+...+.+...+..|.+-|....+. ...+|.....+|++.|.+ .+..++|+++|.++++.++.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk- 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK- 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 6666776777888888888877766653 223677777777775542 24567888888888877643
Q ss_pred ChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037510 656 DLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735 (806)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 735 (806)
|..+-|.++-+++..|++.+|..+|.+..+.. .-...+|-.++.+|..
T Consensus 645 -------------------------------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 645 -------------------------------NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred -------------------------------hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHH
Confidence 77788899999999999999999999999953 2234589999999999
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 736 VGDINEAFNLRDEMLKI-NLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+|+|..|++.|+...+. .-..++.....|..++.+.|++.+|++++............+-+|..+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999874 333477888999999999999999999999887733333345555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-20 Score=196.70 Aligned_cols=599 Identities=15% Similarity=0.103 Sum_probs=434.7
Q ss_pred hhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 037510 138 LKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG--IVPDVFTCSIVVNAYCKEKSMEKALDFV 215 (806)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 215 (806)
++.|...|..+.+..+ +|+..+-.-.......|++..|+.+|...+... ..||+. -.+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5899999999888654 466666555666678899999999999977643 344543 23446667999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037510 216 KEMENLGFELNVVTYNSLIDGYVSLG---DLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED 292 (806)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 292 (806)
....+... -++.++..|.-.-.... .+..+..++...-.... .|++..+.|.+-|.-.|+++.+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99998642 23444444433333333 35566666666655443 578899999999999999999999999888762
Q ss_pred CCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcH
Q 037510 293 DVI-VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSF 371 (806)
Q Consensus 293 ~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 371 (806)
... .-...|..+..+|...|++++|...|.+..+....--+..+.-|..+|.+.|+++.+...|+.+.+.. +.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH
Confidence 111 12345888999999999999999999998877543335566678899999999999999999988764 5556677
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCChhhHHH
Q 037510 372 NTLVDGYCREC----DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML----KRCVCPNEVGYCT 443 (806)
Q Consensus 372 ~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 443 (806)
..|...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+ .++.+|..+. ..+..+.....+.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777665 4577777777777653 33667777777776655444 3477666554 3555678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 444 LLDILFNKGDFYGAVKLWNNILAR---GFYKNT------ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTL 514 (806)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (806)
+...+...|+++.|...|...... ...++. .+-..+...+-..++.+.|.+.+....+.. +.-...|..+
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHh
Confidence 999999999999999999988765 112222 223345666667789999999999998874 3334556555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHhHHHHH
Q 037510 515 SDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG-LYPNIVTYGAL 593 (806)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l 593 (806)
+......+...+|...++.. -.....++..+..+...+.+...+..|.+-|....+.- ..+|+.+...|
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~----------l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDA----------LNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHH----------HhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 54444567788888888876 22334556667778888888888888888776665432 23576766666
Q ss_pred HHHHHc------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhh
Q 037510 594 ISGWCD------------AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 594 ~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
.+.|.+ .+..++|+++|.+.++.. +-|...-+.++-+++..|++.+|..+|.+..+....
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------- 678 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------- 678 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-------
Confidence 665532 245678999999999864 557888899999999999999999999998875421
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHH
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF-SPDNFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~ 740 (806)
+..+|-.++++|..+|++..|+++|+...+.-. .-+....+.|+.++.+.|++.
T Consensus 679 -------------------------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 679 -------------------------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred -------------------------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 334888899999999999999999999887633 334558889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-Chh-cHHHHHHH------------------HHhcCCHHHHHHHHHHHHHCCCC
Q 037510 741 EAFNLRDEMLKINLVP-NIA-TYNSLVSG------------------LCNSGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 741 ~A~~~~~~~~~~~~~p-~~~-~~~~l~~~------------------~~~~g~~~~A~~~~~~m~~~g~~ 790 (806)
+|.+.+..+.. +.| |+. -+|..+.. ....+..++|.++|.+|...+-.
T Consensus 734 eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 734 EAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999888 445 332 33322211 11235578899999999875443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=206.76 Aligned_cols=452 Identities=16% Similarity=0.156 Sum_probs=274.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYC 344 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 344 (806)
...|.+-..+.|++++|++.-...-+.+ +.+......+-..+.+..+++...+--....+.... -..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHH
Confidence 5566777778888888887766655442 222333334445566666666655554444444322 4557777777777
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH-HHHHHHHhcCCHHHHH
Q 037510 345 KLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN-TLLKGLCRVGDVDEAL 423 (806)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~ 423 (806)
..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+...|++.+|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777777653 345667777777777777777777777777664 45443332 2333444467777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 424 HLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN-TITFNTMIKGLCKMGKMTEAQKIFDKMKEL 502 (806)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 502 (806)
..+.+.++... .-...|+.|...+..+|+...|+..|++.++.+ |+ ...|-.|...|...+.+++|...+.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77776666421 134466667777777777777777777766642 22 345556666666666677777666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 037510 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTM 581 (806)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 581 (806)
. +...+.+..+...|...|..|.|+..|++. ....|+ ...|+.+..++-..|++.+|...+......
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykra-----------l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRA-----------LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHH-----------HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 3 233456666666666667777776666644 223343 456666666666666666666666666654
Q ss_pred CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhh
Q 037510 582 GLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM 660 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 660 (806)
. .-...+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-.+|++++|+..+++.+...+.
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------ 420 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------ 420 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------
Confidence 1 222445566666666666666666666666653 332 445566666666666666666666666654321
Q ss_pred hhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCH
Q 037510 661 ASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDI 739 (806)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~ 739 (806)
-...|+.++..|-..|+.+.|++.+.+.+. +.|.-. +++.|+..|-..|++
T Consensus 421 --------------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 421 --------------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred --------------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCc
Confidence 233566666666666666666666666666 566653 666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHH
Q 037510 740 NEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 776 (806)
.+|++-|+.+++ ++|| +..|..++.++.-..++.+
T Consensus 473 ~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 473 PEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 666666666666 5564 3455555555444444333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-23 Score=203.42 Aligned_cols=448 Identities=16% Similarity=0.161 Sum_probs=361.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 037510 230 YNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYC 309 (806)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 309 (806)
...|.+-..+.|++++|++.-..+-..+. .+....-.+-.++.+..+.+....--....+. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHH
Confidence 56677778899999999998887766543 24444455567777777887776654444443 3445678999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcH-HHHHHHHHhcCCHHHHH
Q 037510 310 KVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSF-NTLVDGYCRECDMTEAF 388 (806)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~ 388 (806)
..|++++|+.+++.+++..++ ....|..+..++...|+.+.|...|.+..+. .|+.... +.+...+-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999987544 6778999999999999999999999988875 4654433 33444555689999999
Q ss_pred HHHHHHHHCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 389 RLCAEMLRQGIEPS-VVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPN-EVGYCTLLDILFNKGDFYGAVKLWNNILA 466 (806)
Q Consensus 389 ~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (806)
..+.+.++. .|. ...|+.|...+-..|+...|++.|++.++. .|+ ...|..|...|...+.++.|+..|.....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 999888875 343 467899999999999999999999999885 444 56899999999999999999999998887
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhc
Q 037510 467 RGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKE 546 (806)
Q Consensus 467 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 546 (806)
.. +.....+..+...|..+|.++-|+..+++.++.. +.=...|+.+..++-..|++.+|...|++. .
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka-----------L 347 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA-----------L 347 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH-----------H
Confidence 63 3356677778888999999999999999999874 223688999999999999999999999876 2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HH
Q 037510 547 AIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-VA 623 (806)
Q Consensus 547 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 623 (806)
...|+ ....+.|...+...|.+++|..+|....+- .|. ....+.|...|-+.|++++|+..|++.++- .|+ ..
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd 423 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD 423 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence 23443 677888999999999999999999988875 444 456888999999999999999999999874 665 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.|+.+...|-..|+++.|.+.+.+++...+. -...++.|...|...|+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt--------------------------------~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT--------------------------------FAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH--------------------------------HHHHHhhHHHHhhccCC
Confidence 8899999999999999999999999987533 34578899999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD 738 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 738 (806)
..+|++-+++.++ +.||.. +|..++.++---.+
T Consensus 472 i~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 472 IPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred cHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhc
Confidence 9999999999999 889975 77777665543333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=190.91 Aligned_cols=436 Identities=14% Similarity=0.055 Sum_probs=279.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLIN 341 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 341 (806)
...+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|+..++..++..+. +...+..+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 345667788889999999999999988754 467778888888999999999999999998887533 5668888889
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 342 GYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
+|...|++++|+.-|......+ ..+......++..+.. ..+........+.. +++...+..+.. +........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 9999999999998887665432 1121111222221111 22333333333331 223333333322 222222222
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHH---HhcCChhHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPN-EVGYCTLLDIL---FNKGDFYGAVKLWNNILARG--FYKNTITFNTMIKGLCKMGKMTEAQKI 495 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 495 (806)
...-+....+. .+. ...+..+...+ ...+++++|.+.|++....+ .+.....++.+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22112111111 111 11111111111 23467888888888888754 123445677777777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLL 575 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
+++..+.. +.....|..+...+...|++++|...++.. ... .+.+...+..+...+...|++++|...|
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a---------l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKA---------LKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88887764 334567777788888888888888888876 222 2334677777888888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 037510 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP 655 (806)
Q Consensus 576 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 655 (806)
++..+.. +.+...+..+...+.+.|++++|+..|++.++. .+.+...+..+..++...|++++|...|++.+......
T Consensus 423 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 423 QKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 8887753 224556666777777888888888888888765 23456777778888888888888888888877654221
Q ss_pred ChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHH
Q 037510 656 DLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGY 733 (806)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~ 733 (806)
+. ...+.. .++..+..+...|++++|.+++++.++ +.|+.. ++..++..+
T Consensus 501 ~~--------------------------~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 501 KP--------------------------MYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLL 552 (615)
T ss_pred cc--------------------------ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 00 001111 122222233446788888888888877 556654 677788888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~ 751 (806)
.+.|++++|+++|+++.+
T Consensus 553 ~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888888877
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-18 Score=189.63 Aligned_cols=442 Identities=12% Similarity=-0.020 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID 306 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 306 (806)
...+......+.+.|++++|...|++..+.. |+...|..+..+|.+.|++++|++.++...+. .+.+...+..+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 3456678889999999999999999998754 67888999999999999999999999999876 3445678899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHH
Q 037510 307 GYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTE 386 (806)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 386 (806)
++...|++++|+.-|..+...+...+. ....++..+.. ..+........+.. +++...+..+.. +........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 999999999999988877655322222 22222222222 12233333332221 333333333322 222222222
Q ss_pred HHHHHHHHHHCCCCCCc-chHHHHHHHH---HhcCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChhHHHHH
Q 037510 387 AFRLCAEMLRQGIEPSV-VTYNTLLKGL---CRVGDVDEALHLWLMMLKRC-VCP-NEVGYCTLLDILFNKGDFYGAVKL 460 (806)
Q Consensus 387 a~~~~~~m~~~g~~~~~-~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 460 (806)
...-+.+..+ ..+.. ..+..+...+ ...+++++|...|+..++.+ ..| ....+..+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222222111 11111 1122211111 23478999999999999865 223 456788888999999999999999
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 037510 461 WNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREIL 540 (806)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (806)
+++.+... +.....|..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|+..
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka------ 425 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS------ 425 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Confidence 99999863 3346688888899999999999999999998875 556889999999999999999999999977
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 037510 541 PSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 620 (806)
... .+.+...+..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|++.|++.++.....
T Consensus 426 ---l~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 426 ---IDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred ---HHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 222 23356778889999999999999999999998752 3357788899999999999999999999999863221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
...+..+...+. .+..+++.. + +.......+..... ..+.+..++..++..+..
T Consensus 501 -~~~~~~~~~l~~------~a~~~~~~~---~---------------~~~eA~~~~~kAl~-l~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 501 -KPMYMNVLPLIN------KALALFQWK---Q---------------DFIEAENLCEKALI-IDPECDIAVATMAQLLLQ 554 (615)
T ss_pred -ccccccHHHHHH------HHHHHHHHh---h---------------hHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHH
Confidence 112222111111 122222210 0 00011111111111 123455678999999999
Q ss_pred cCChhhHHHHHHHHHHCCCCCC
Q 037510 701 SGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
.|++++|+..|++..+ +.+.
T Consensus 555 ~g~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 555 QGDVDEALKLFERAAE--LART 574 (615)
T ss_pred ccCHHHHHHHHHHHHH--Hhcc
Confidence 9999999999999988 4454
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-20 Score=193.67 Aligned_cols=300 Identities=15% Similarity=0.116 Sum_probs=152.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhcCCH
Q 037510 413 LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN---TITFNTMIKGLCKMGKM 489 (806)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 489 (806)
+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 12333444455555555555555555555444321111 12334444444444555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
++|..+|+++.+.. +.+..++.. ++..+.+.|+++
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~--------------------------------------------la~~~~~~g~~~ 158 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQ--------------------------------------------LLEIYQQEKDWQ 158 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHH--------------------------------------------HHHHHHHhchHH
Confidence 55555555444432 223344444 444444445555
Q ss_pred HHHHHHHHHHHCCCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNI----VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFL 645 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 645 (806)
+|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.+.++++.+.. +.+...+..++..+.+.|++++|.+++
T Consensus 159 ~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555444443221111 123344445555666666666666665542 223445555556666666666666666
Q ss_pred HHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHh
Q 037510 646 QKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFT 725 (806)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 725 (806)
+++...++. ....+++.++.+|++.|++++|...++++.+ ..|+...
T Consensus 238 ~~~~~~~p~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~ 284 (389)
T PRK11788 238 ERVEEQDPE-------------------------------YLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADL 284 (389)
T ss_pred HHHHHHChh-------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchH
Confidence 666543211 0123455566666666666666666666665 3455555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN---SGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
+..++..+.+.|++++|+.+++++++ ..|+...+..++..+.. .|+.++|..++++|.++++.|+..
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666665 24555555555555443 345666666666666555555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=193.15 Aligned_cols=303 Identities=18% Similarity=0.126 Sum_probs=230.8
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhc
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPD---VFTCSIVVNAYCKE 205 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~ 205 (806)
...+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445678899999999999988754 3667888888999999999999999998887532221 24567778888888
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHH
Q 037510 206 KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRT----AVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 281 (806)
|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888753 44677888888889999999999999988887654322 12355677778888888888
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
...|+++.+. .+.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888765 23345577777888888888888888888888764433345677888888888888888888888877
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCh
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCR---VGDVDEALHLWLMMLKRCVCPNE 438 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 438 (806)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 456666677888888888888888888888775 5777777777776664 45788888888888876665554
Q ss_pred h
Q 037510 439 V 439 (806)
Q Consensus 439 ~ 439 (806)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 4
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-18 Score=187.94 Aligned_cols=359 Identities=11% Similarity=0.019 Sum_probs=264.6
Q ss_pred HHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHH
Q 037510 343 YCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVD 420 (806)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 420 (806)
+.+..+++.-.-.|....+.. -.-+......++..+.+.|++++|..+++..+..... +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 456667776666665443321 0122334455667778889999999999888876433 3455566667777889999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMK 500 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 500 (806)
+|...++++.... +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999988863 3356678888888889999999999999888763 4456777888888889999999999888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 037510 501 ELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQT 580 (806)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 580 (806)
... +.+...+..+ ..+...|++++|...++.+ ......++...+..+...+...|++++|...+++..+
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~---------l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARAL---------LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHH---------HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 654 2233334333 3477889999998888876 3332223344455566778888999999999988887
Q ss_pred CCCCCCHhHHHHHHHHHHccCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 581 MGLYPNIVTYGALISGWCDAGMLNK----AFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 581 ~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
.. +.+...+..+...+...|++++ |...|+++++.. +.+...+..+...+.+.|++++|...++++.+..+.
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-- 316 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-- 316 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Confidence 63 3356677778888888888875 788888888763 346778888888888999999999999888876432
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHh
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAA 735 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 735 (806)
+..++..++.+|.+.|++++|+..|+++.+ ..|+.. .+..++.++..
T Consensus 317 ------------------------------~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 317 ------------------------------LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHH
Confidence 556777788888899999999999988888 567764 34446777888
Q ss_pred cCCHHHHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLK 751 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~ 751 (806)
.|++++|+..|+++++
T Consensus 365 ~G~~deA~~~l~~al~ 380 (656)
T PRK15174 365 AGKTSEAESVFEHYIQ 380 (656)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999999999887
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-17 Score=183.16 Aligned_cols=355 Identities=10% Similarity=0.010 Sum_probs=282.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 037510 335 ICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLC 414 (806)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 414 (806)
-...++..+.+.|+.++|..+++...... +-+...+..++.+....|++++|...++++.+... .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 34456677889999999999999988764 44455666677778889999999999999998632 25567888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037510 415 RVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQK 494 (806)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 494 (806)
..|++++|...+++++... +.+...+..++..+...|++++|...++.+..... .+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999999862 33567888899999999999999999998877642 233334333 34788999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhH----
Q 037510 495 IFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTS---- 570 (806)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---- 570 (806)
.++.+.+....++...+..+..++...|++++|...++.. ... .+.+...+..+...+...|++++
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a---------l~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA---------LAR-GLDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH---------Hhc-CCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 9999887653344555566678899999999999999987 322 23457788889999999999986
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 571 LVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
|...+++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++.+.|++++|...++++..
T Consensus 269 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999998863 3356788899999999999999999999999863 34567788889999999999999999999987
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 037510 651 FDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLI 730 (806)
Q Consensus 651 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 730 (806)
.++. +...+..++.++...|+.++|...|+++.+ ..|+..
T Consensus 347 ~~P~--------------------------------~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~~~------ 386 (656)
T PRK15174 347 EKGV--------------------------------TSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARASHL------ 386 (656)
T ss_pred hCcc--------------------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChhhc------
Confidence 6422 233455567889999999999999999999 677764
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 731 HGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..++++|...+.+.++
T Consensus 387 -----~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 387 -----PQSFEEGLLALDGQIS 402 (656)
T ss_pred -----hhhHHHHHHHHHHHHH
Confidence 2344566666666665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-15 Score=153.69 Aligned_cols=374 Identities=14% Similarity=0.141 Sum_probs=277.7
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHh
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNM 148 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (806)
...-..+..+-..|++++|..++.++++. .+..+..|..|...|-.+|+.+++...+-.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQ--------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34444566666669999999999999865 3455778999999999999999999888776
Q ss_pred hhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH
Q 037510 149 GKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVV 228 (806)
Q Consensus 149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 228 (806)
--..+. |...|..+.....+.|++++|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..
T Consensus 200 AHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 200 AHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 665543 66899999999999999999999999999975 3355555556677889999999999999999875322322
Q ss_pred HHH----HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------
Q 037510 229 TYN----SLIDGYVSLGDLNGAKRVLEWTCEKGI-SRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED----------- 292 (806)
Q Consensus 229 ~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------- 292 (806)
-.. ..++.+...++-+.|.+.++.....+- ..+...++.++..|.+...++.|......+....
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 222 345667778888999999988877321 2456678899999999999999999888887620
Q ss_pred ---------------CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHhHHHHH
Q 037510 293 ---------------DVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG--LEMNLLICNSLINGYCKLGQVCEAKRV 355 (806)
Q Consensus 293 ---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (806)
+..++... --+.-++.+....+....+.......+ +.-++..|.-+.++|...|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11111112 112223344444555555555555555 444667899999999999999999999
Q ss_pred HHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 037510 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK---- 431 (806)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 431 (806)
|..+......-+...|-.+..+|...|.+++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.+..+..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 9999887555567789999999999999999999999998762 22345556677788899999999999998653
Q ss_pred ----cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 432 ----RCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILA 466 (806)
Q Consensus 432 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (806)
.+..|+........+.+.+.|+.++-+.+-.+++.
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23445555666677788888888886666665554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-15 Score=157.31 Aligned_cols=626 Identities=12% Similarity=0.055 Sum_probs=398.5
Q ss_pred CCHHHHHHH--HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 037510 120 FSPTVFDMI--LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSI 197 (806)
Q Consensus 120 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 197 (806)
+++++-..| .+....+|++++|.+++.++++..+ .+..+|..|...|-.+|+.+++...+-...... +-|..-|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 444443333 3334556999999999999999875 378899999999999999999998887776654 336688888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH----HHHHHH
Q 037510 198 VVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTT----LTKGYC 273 (806)
Q Consensus 198 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~ 273 (806)
+.....+.|++++|.-.|.+..+.. +++...+---...|.+.|+...|..-|.++....++.|..-... .++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886 45555555667889999999999999999998754333332333 355677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------------------
Q 037510 274 KQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL------------------------ 329 (806)
Q Consensus 274 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------------ 329 (806)
..++-+.|.+.++......+-..+...++.++..+.+...++.|.....++.....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 77888999999988887544555667888999999999999999988887776211
Q ss_pred ---CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 037510 330 ---EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVV 404 (806)
Q Consensus 330 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 404 (806)
.++..+ -.+.-++......+....+...+...+ +.-+...|.-+..++...|++.+|+.+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 122222 122233334444444444444444444 34456778889999999999999999999998875445677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCcHHHH
Q 037510 405 TYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILA--------RGFYKNTITF 476 (806)
Q Consensus 405 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 476 (806)
.|..+..+|...|..++|.+.|+.++... +.+...-..|...+.+.|+.++|.+.++.+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 89999999999999999999999999862 33556777888899999999999999998652 2234444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 477 NTMIKGLCKMGKMTEAQKIFDKMKELG-----CLP-----------------NIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 477 ~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
......+.+.|+.++=+.+...|+... +.| ........+.+-.+.++.....+....-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 556677888888887666555554321 111 1111222233333333322111111000
Q ss_pred HhcccChhhhhcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCCH---hHHHHHHHHHHccCChHHHH
Q 037510 535 ERREILPSMEKEAIVP--SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL--YPNI---VTYGALISGWCDAGMLNKAF 607 (806)
Q Consensus 535 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~~---~~~~~l~~~~~~~g~~~~A~ 607 (806)
.. .......+..- .-..+..++..+.+.+++++|..+...+.+... .++. ..-...+.+....+++..|.
T Consensus 610 ~~---~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~ 686 (895)
T KOG2076|consen 610 TE---FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAF 686 (895)
T ss_pred hh---hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 00 00001111111 113445577788888888888888887776421 1111 11223445566788888888
Q ss_pred HHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcC
Q 037510 608 KAYFDMIEK-GFSPN---VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSL 683 (806)
Q Consensus 608 ~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (806)
..++.|+.. ++..+ ...|+...+...+.|+-.-=..++..+.......
T Consensus 687 ~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~---------------------------- 738 (895)
T KOG2076|consen 687 SYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDD---------------------------- 738 (895)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccC----------------------------
Confidence 888888753 11111 2233333333444443222222332222221110
Q ss_pred CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHH-HHHh-------cC---CHHHHHHHHHHHHHc
Q 037510 684 CVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIH-GYAA-------VG---DINEAFNLRDEMLKI 752 (806)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-~~~~-------~g---~~~~A~~~~~~~~~~ 752 (806)
++......++-+...+.+.-|+..+-++.. ..||....+.++. ++.. .. .+-+++..+++-.+.
T Consensus 739 ---~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l 813 (895)
T KOG2076|consen 739 ---TPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL 813 (895)
T ss_pred ---CcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 112222334445667777888887777777 6677553332221 1111 11 233455555555542
Q ss_pred C-CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 753 N-LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 753 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
. ..---.++..++++|-..|-.--|..+|++..+
T Consensus 814 R~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 814 RRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 1 111345666788888888888888888888876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-17 Score=184.20 Aligned_cols=422 Identities=12% Similarity=-0.019 Sum_probs=246.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++..+.. +.+...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 333444445555555555555554421 2233345555555555555555555555544432 22333444444555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037510 382 CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLW 461 (806)
Q Consensus 382 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (806)
|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..++++++.. +.+...+..+...+...+..+.|+..+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 55555555555554431 11222 4444444555555555555555555431 112333333444444444444444444
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcCCh---HHHHHHHHH
Q 037510 462 NNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC-----KVGNL---EEAFKIKNL 533 (806)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~---~~A~~~~~~ 533 (806)
+.+.. .|+.. ... ........+.... ..+++ ++|++.++.
T Consensus 174 ~~~~~---~p~~~----------------~~l-------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 174 DDANL---TPAEK----------------RDL-------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HhCCC---CHHHH----------------HHH-------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 43332 11100 000 0001111111111 11223 667777776
Q ss_pred HHhcccChhhhhcCCCCCHH-HH----HHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHccCChHHHH
Q 037510 534 MERREILPSMEKEAIVPSID-MY----NYLISVAFKSRELTSLVDLLAEMQTMGLY-PNIVTYGALISGWCDAGMLNKAF 607 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~ 607 (806)
+.+ .....|+.. .+ ...+..+...|+.++|+..|+.+.+.+.. |+. ....+..+|...|++++|+
T Consensus 222 ll~--------~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 222 LEA--------LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHh--------hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 621 111222211 11 11133456779999999999999987532 332 2222567899999999999
Q ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCC
Q 037510 608 KAYFDMIEKGFSP---NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLC 684 (806)
Q Consensus 608 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (806)
..|+++.+..... .......+..++...|++++|...++++....+.. ... ......
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~--~~~------------------~~~~~~ 352 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF--LRL------------------YGSPTS 352 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce--Eee------------------cCCCCC
Confidence 9999988753111 13456667778899999999999999998764210 000 000001
Q ss_pred CCC---hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Chh
Q 037510 685 VPN---YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIA 759 (806)
Q Consensus 685 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 759 (806)
.|+ ...+..++..+...|++++|++.++++.+ ..|+.. .+..++..+...|++++|++.++++++ +.| +..
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~ 428 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNIN 428 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence 233 23556778889999999999999999998 678764 889999999999999999999999999 567 466
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
.+..++..+.+.|++++|..+++++++ ..|+...
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~ 462 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHH
Confidence 777888899999999999999999998 5666544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-17 Score=181.33 Aligned_cols=426 Identities=12% Similarity=0.036 Sum_probs=309.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSL 339 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (806)
.+..-..-.+.+....|+.++|++++.+.... .+.+...+..+...+.+.|++++|..++++..+..+ .+...+..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 35555566777888999999999999999763 244556789999999999999999999999988743 356778889
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCH
Q 037510 340 INGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 419 (806)
+..+...|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998863 45556 888899999999999999999999987432 445556677888888999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH---HHHHHHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKM---TEAQKIF 496 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~ 496 (806)
+.|+..++.... .|+.. .-+ ....+....+ ..+.......+++ ++|+..+
T Consensus 167 e~Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEK---RDL-------EADAAAELVR--------------LSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHH
Confidence 999998876554 23210 000 0000000000 0011111222333 6778888
Q ss_pred HHHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC-CCHHHHHHHHHHHHhcCCHh
Q 037510 497 DKMKEL-GCLPNII-TY----RTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV-PSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 497 ~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 569 (806)
+.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+ ...+.. |+. ....+...+...|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l---------l~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL---------KAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---------hccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 888754 1122221 11 11133456779999999999988 333321 322 2223577899999999
Q ss_pred HHHHHHHHHHHCCCCC---CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYP---NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-----------SPN---VAICSKLVSTL 632 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 632 (806)
+|+..|+++.+..... .......+..++...|++++|.+.++++.+... .|+ ...+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999987653111 123456667788899999999999999987521 123 23456677888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
...|++++|+..++++....+ .+...+..++..+...|++++|++.++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P--------------------------------~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAP--------------------------------GNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999999987653 267789999999999999999999999
Q ss_pred HHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037510 713 ALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 713 ~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
++++ ..|+.. .+..++..+...|++++|..+++++++ ..|+......|
T Consensus 418 ~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 418 KAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 9999 779864 777888899999999999999999998 56755543333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-14 Score=141.04 Aligned_cols=581 Identities=12% Similarity=0.050 Sum_probs=351.9
Q ss_pred cCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH-------------H-
Q 037510 135 KGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVV-------------N- 200 (806)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~-------------~- 200 (806)
.++...|..++..+.+.++. ++..|-+-.+.--..|++..|..+..+=.+. ++.+...|.-.+ .
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHH
Confidence 35677788888888877654 6666666655555666666666655443322 111222221111 0
Q ss_pred ---------HHHhcCC----hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037510 201 ---------AYCKEKS----MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTT 267 (806)
Q Consensus 201 ---------~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (806)
.+++.-+ ...-..++++.++. ++.++..|-.. ....+.+.|..++.+..+.- +.+...|
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~dLw-- 413 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMDLW-- 413 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHHHH--
Confidence 1112111 22223344444433 22333333332 23344445666666666531 1222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCChhHHHHHHHHH
Q 037510 268 LTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEM----LKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 268 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~ 343 (806)
-+|.+..-++.|..++...++. ++.+...|.+....--..|+.+...+++++- ...|+..+...|-.=...+
T Consensus 414 --lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 --LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3444455667777777777664 5666666666666666677777776666543 3456666666676666667
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRP--DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
-+.|..-.+..+.......|+.. -..+|+.-...|.+.+.++-|..+|...++-- +-+...|......--..|..++
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHH
Confidence 77777777777777666665432 23466666677777777777777777766642 2244555555555555677777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE 501 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 501 (806)
...++++.... ++-....|......+...|+...|..++..+.+.. +.+...|-+-+.....+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777665 33345556666666777777777777777777654 33566666677777777777777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 037510 502 LGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQT 580 (806)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 580 (806)
. .|+...|.--+..-.-.++.++|.+++++.. ...|+ ...|..+...+-+.++++.|.+.|..-.+
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-----------k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEAL-----------KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-----------HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 4 3566666655666666677777777776541 12233 34556666666677777777766665544
Q ss_pred CCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhh
Q 037510 581 MGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM 660 (806)
Q Consensus 581 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 660 (806)
. ++-....|..+...-.+.|++-+|..++++..-++ +.+...|...+..=.+.|..+.|..+..++++.
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--------- 782 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--------- 782 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 3 23334456666666666677777777777776653 345666777777777777777777777666654
Q ss_pred hhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037510 661 ASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 740 (806)
++.+...|..-|...-+.++-..+.+.+++ ..-|..........+-...+++
T Consensus 783 -----------------------cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 783 -----------------------CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred -----------------------CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHH
Confidence 233556777777777777776666655544 3345555666777777778888
Q ss_pred HHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 741 EAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 741 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+|.+.|.++++ +.||. .+|..+..-+.+.|.-++-.+++.+...
T Consensus 835 kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 835 KAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 88888888887 44543 4555566667788887777778777765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-15 Score=167.64 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=168.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHH
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG-----FSPNVAICSKLVSTL 632 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~ 632 (806)
-+-++...++..++++.++.+...|.+....+-..+.++|...++.++|..+|.++.... ..++......|..++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 455778899999999999999988866555677889999999999999999999997643 123444467889999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HHHHHHHHHHhcCChhhHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
...+++++|..+++++.+.. |....... .....+.||-. .+..++..+...|++.+|++.+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~--p~~~~~~~----------------~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQT--PYQVGVYG----------------LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred HhcccHHHHHHHHHHHHhcC--CcEEeccC----------------CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998742 21110000 00011123333 3445677788999999999999
Q ss_pred HHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 712 SALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 712 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
+++.. ..|... ....++..+...|++.+|.+.++.+.. +.| +..+....+.++...|++.+|..+.+++.+ .
T Consensus 440 e~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~ 513 (822)
T PRK14574 440 EDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS--R 513 (822)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 99998 678664 889999999999999999999988877 567 566778888999999999999999999987 6
Q ss_pred CCCHhhHH
Q 037510 790 TPTVVTYN 797 (806)
Q Consensus 790 ~p~~~~~~ 797 (806)
.|+...-.
T Consensus 514 ~Pe~~~~~ 521 (822)
T PRK14574 514 SPEDIPSQ 521 (822)
T ss_pred CCCchhHH
Confidence 77755433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-15 Score=162.74 Aligned_cols=451 Identities=13% Similarity=0.052 Sum_probs=246.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhhHHHH--HHHHHhc
Q 037510 201 AYCKEKSMEKALDFVKEMENLGFELNV--VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR-TAVTYTTL--TKGYCKQ 275 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l--i~~~~~~ 275 (806)
...+.|+++.|+..|+++.+.. |+. .++ .++..+...|+.++|+..+++... | +...+..+ ...+...
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHc
Confidence 3457777777777777777653 332 233 666667777777777777777762 2 22222222 4566666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHH
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRV 355 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (806)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|+..
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 77777777777777652 334455556666777777777777777777665 33444444444444344555557777
Q ss_pred HHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435 (806)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (806)
++++.+.. +.+...+..+..++.+.|-...|.++..+ .|+..+-...... ..+.+.+..+.. ..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a----~~ 255 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMA----VL 255 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhc----cc
Confidence 77777653 44555566666677777776666655544 2222221111110 011111111111 00
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILAR--GFYKNTIT----FNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNII 509 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 509 (806)
++..- -. +---.+.|+.-++.+... ..++.... .--.+.++...|+..++++.++.+...+.+.-..
T Consensus 256 ~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 00000 00 000123444445554442 11211111 1234556777888888888888888777554455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC------
Q 037510 510 TYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL------ 583 (806)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~------ 583 (806)
+-..+.++|...+++++|..++..+....- ......++......|..++...+++++|..+++.+.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~----~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDG----KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccc----cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 777788888888888888888887721100 0001233444456777788888888888888888776311
Q ss_pred -----CCC--Hh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 037510 584 -----YPN--IV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP 655 (806)
Q Consensus 584 -----~p~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 655 (806)
.|+ -. .+..++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|...++.+...+ |
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA--P 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--C
Confidence 111 11 12223444555566666666666555442 3355555555555555566666665554444332 1
Q ss_pred ChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 037510 656 DLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF 724 (806)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 724 (806)
+ +..+....+.++...|++++|..+.+.+.+ ..|+..
T Consensus 482 ~------------------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 482 R------------------------------SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred c------------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 1 333444455555555556666555555555 445544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-13 Score=134.31 Aligned_cols=599 Identities=13% Similarity=0.038 Sum_probs=453.7
Q ss_pred CCCchHHHHHHHHHHhhhhcCCCch---hh-----------HHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHH
Q 037510 81 ARMFDETRAFLYELVGLCKNNYAGF---LI-----------WDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFD 146 (806)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~---~~-----------~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 146 (806)
.++...|+.+|.++.+..|.++++- .. -+.+.+....|+-+.+++.--+ +..-.+.|..+..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 3566778888888887766554431 11 1233444455566666654332 4456666777777
Q ss_pred HhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC
Q 037510 147 NMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELN 226 (806)
Q Consensus 147 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 226 (806)
...+..+ .++..|---... ..+...-..++.+.++. ++.++..|-. -....+.+.|+-++.+..+. ++.+
T Consensus 340 ~Avr~~P-~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 340 NAVRFLP-TSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHHhCC-CChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccch
Confidence 7766532 244444332221 22233344566666664 3334444443 33556667799999988875 3334
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCChHhHHH
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKE---EDDVIVDEYAYGV 303 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 303 (806)
.. |.-+|++..-++.|.+++++..+. ++.+...|.+-...--.+|+.+....++.+-.. ..|+..+...|..
T Consensus 410 ~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 44 444567778899999999999875 556788898888877889999999988877442 3478888888988
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEM--NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
=...|-+.|..--+..+....+..|+.- -..+|+.-.+.|.+.+.++-|+.+|....+. ++.+...|...+..--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 8899999999999999999998887753 2458888889999999999999999988875 366777888888877788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037510 382 CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLW 461 (806)
Q Consensus 382 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (806)
|..++...+|++....- +-....|......+-..|++..|..++....+.. +.+...|...+.......+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999862 2244556666677788899999999999999874 337788999999999999999999999
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 037510 462 NNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN-IITYRTLSDGYCKVGNLEEAFKIKNLMERREIL 540 (806)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (806)
.+.... .++..+|.--+....-.+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~------- 710 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQ------- 710 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHh-------
Confidence 999875 577888877777777889999999999999886 355 46788888999999999999998873
Q ss_pred hhhhhcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 037510 541 PSMEKEAIVP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFS 619 (806)
Q Consensus 541 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 619 (806)
.....| .+..|-.|...--+.|.+-.|..+++...-++ +-+...|...|..-.+.|+.+.|..+..++++. ++
T Consensus 711 ----G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp 784 (913)
T KOG0495|consen 711 ----GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CP 784 (913)
T ss_pred ----ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 333344 56778888888889999999999999998774 446788999999999999999999999999886 45
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH
Q 037510 620 PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC 699 (806)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 699 (806)
.+...|..-|....+.++-..+...+++. ..|+.+.-.+...+.
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkc------------------------------------e~dphVllaia~lfw 828 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKC------------------------------------EHDPHVLLAIAKLFW 828 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhc------------------------------------cCCchhHHHHHHHHH
Confidence 56666766666666666544444444332 346778888999999
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 700 KSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
...+++.|.+.|.+..+ ..||. .+|..+..-+.+.|.-+.-.+++.+... .+|..
T Consensus 829 ~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCC
Confidence 99999999999999999 77887 4898899999999988888888888877 56644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-14 Score=132.15 Aligned_cols=326 Identities=18% Similarity=0.236 Sum_probs=147.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCChhHH-HHHHHHHHHcCCCcCHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC--KEKSMEKA-LDFVKEMENLGFELNVVTYNS 232 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~ 232 (806)
.+++-|.|+.. ..+|....+.-+|+.|...|+..+...-..+++.-| ...++.-| ++.|-.|...| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 44556666553 456677777778888877776655554444443322 22222211 22222333322 1111111
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG 312 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 312 (806)
+.|++.+ -+|+..+ .+..+|..+|.++|+-...+.|.+++++.... ..+.+..+||.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY-- 254 (625)
T ss_pred ------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh--
Confidence 2232222 2222221 24455555555555555555555555555444 344455555555443221
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
....++..+|....+.||..|+|+++.+..+.|+++.|.. .|++++.
T Consensus 255 --~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~-------------------------------aalqil~ 301 (625)
T KOG4422|consen 255 --SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK-------------------------------AALQILG 301 (625)
T ss_pred --hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-------------------------------HHHHHHH
Confidence 1114445555555555555555555555555554433221 2334444
Q ss_pred HHHHCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037510 393 EMLRQGIEPSVVTYNTLLKGLCRVGDVDE-ALHLWLMMLK----RCVCP----NEVGYCTLLDILFNKGDFYGAVKLWNN 463 (806)
Q Consensus 393 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (806)
+|++.|+.|...+|..++..+++.++..+ +..+..++.. +.+.| |...+...+..|.+..+.+.|.++-.-
T Consensus 302 EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 302 EMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGL 381 (625)
T ss_pred HHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455555555555555554444444322 2222222221 11111 222333344444444444444443332
Q ss_pred HHHCC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 464 ILARG----FYKN---TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 464 ~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
..... +.++ ..-|..+....|+....+.-...++.|+-.-+-|+..+...++++..-.|.++-..+++..+
T Consensus 382 l~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 382 LKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 22110 1111 12234445555555666666666666655555566666666666666666666655555555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-14 Score=137.76 Aligned_cols=486 Identities=14% Similarity=0.100 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------hHh
Q 037510 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTY-TTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD------EYA 300 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~ 300 (806)
.+...|..-|.......+|+..++-+.+...-||.-.. ..+.+.+.+...+.+|++.|+..... .|+ ...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~riki 278 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhhHHHH
Confidence 33444556677777888999999988877666665543 34567888999999999999887754 222 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcH--------H
Q 037510 301 YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSF--------N 372 (806)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~ 372 (806)
.+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|......||..-| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 555566788899999999999988876 467766666666777789999999999998765333333221 2
Q ss_pred HHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 037510 373 TLVDGYCRECDM-----------TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGY 441 (806)
Q Consensus 373 ~li~~~~~~g~~-----------~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 441 (806)
.|+.--.++..+ ++++-.--+++.--+.|+-.. | .+-.++.+..-... +.-...-
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~--~la~dle 422 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHA--ELAIDLE 422 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhh--hhhhhhh
Confidence 222222221111 111111111111111111100 0 01111111111100 0000011
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK--MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
..-...|.+.|+++.|++++.-+.+.+-..-...-+.|-..+.. -.++..|..+-+...... +-+......-.....
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 12234577899999999998888776433333333333332222 346778888777776543 334444444444556
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 599 (806)
..|++++|.+.|++. ......-....| .+...+-..|++++|++.|-.+... +..+......+...|..
T Consensus 502 ~ngd~dka~~~ykea---------l~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEA---------LNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHH---------HcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 678999999998877 222221112222 2444577889999999988776542 23356667777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
..+..+|++++.+.... ++.|+.++..|...|-+.|+-..|.+..-+...--
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryf--------------------------- 622 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------------------------- 622 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc---------------------------
Confidence 89999999999888765 56688899999999999999888887765544321
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 680 ARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYA-AVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+.|..+...|..-|....-+++|+.+|++..- +.|+.+-|-.++..|. +.|++.+|+++|+....+ +..|.
T Consensus 623 -----p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedl 694 (840)
T KOG2003|consen 623 -----PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDL 694 (840)
T ss_pred -----CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cccch
Confidence 24677777788888888889999999999887 8899999988887775 479999999999998774 55588
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLF 781 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~ 781 (806)
.+...|++.+...|. .+|.++-
T Consensus 695 dclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 695 DCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHHHHhccccc-hhHHHHH
Confidence 888888888887776 3344443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-13 Score=130.67 Aligned_cols=317 Identities=14% Similarity=0.192 Sum_probs=207.6
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC--ChH-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG--EGY-VALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~-~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
....|.++++.-+|+.|...|...+...-..|++.-+-.+ ++- .-++.|-.|...|-. +..+| +.|++
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccH
Confidence 3567999999999999999988878777776665444322 222 223555566554422 22333 44544
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
.+ ++-+.. +.+..+|..+|.+.|+--..+.|.+++++..+...+.+..+||.+|.+-.-. ...+++.+|
T Consensus 196 Ad---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred HH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 33 332222 3456677888888888878888888888777766667777777777654322 225677777
Q ss_pred HhcCCCCCChHhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhH-HHHHHHHHhh--
Q 037510 289 KEEDDVIVDEYAYGVLIDGYCKVGKVDE----AIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCE-AKRVLRCMGD-- 361 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~-- 361 (806)
... .+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..
T Consensus 265 isq-km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 265 ISQ-KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHh-hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 776 678888888888888888886654 45677778888888888888888887777776533 4444444322
Q ss_pred --CCCCC----ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCc---chHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 362 --WNLRP----DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG----IEPSV---VTYNTLLKGLCRVGDVDEALHLWLM 428 (806)
Q Consensus 362 --~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 428 (806)
..++| |...|...+..|....+.+-|.++-.-+.... +.|+. .-|..+....|+....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33445555666666666666666554443211 12222 3355667777777788888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037510 429 MLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGF 469 (806)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (806)
|+-.-.-|+..+...++.+..-.+.++-.-++|.++...|.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 87776777777888888888888888888888888877653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-14 Score=134.27 Aligned_cols=486 Identities=15% Similarity=0.111 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSC-NCLLSNLVKNGEGYVALLVYEQMMRVGIVPDV----FTCSI 197 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ 197 (806)
.++--|..-|....+..+|+..++-+.+....|+.-.. -.+...+.+..++.+|+++|+-.+..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445566677788888888888888776555554432 23566777888888888888877664222222 23444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh--------HHHHH
Q 037510 198 VVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVT--------YTTLT 269 (806)
Q Consensus 198 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~li 269 (806)
+.-.+.+.|.++.|+.-|+.+.+. .|+..+-..|+-++..-|+-++..+.|.+|...-..+|..- -..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 444567888888888888888775 47776666666677778888888888888876422222211 11222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChH----hHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-ChhHHHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEY----AYGVLIDGYCKVGKVDEAIRVLNEMLKTG-LEM-NLLICNSLINGY 343 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~ 343 (806)
.--.+. +.++.|.+.. +.+.. |-..+|.- .-.-++.....+.-+.++.. ..+ -...-..-..-|
T Consensus 360 ~eai~n-------d~lk~~ek~~--ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 360 NEAIKN-------DHLKNMEKEN--KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred HHHHhh-------HHHHHHHHhh--hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 211111 1122222210 00000 00000000 00011111111111111110 000 000001112347
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGY-CR-ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
.+.|+++.|+++++-+.+..-+.-...-+.|-..+ .+ -.++..|.+.-+..+... .-+....+.-.+.....|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 78999999999998887654232222223222222 22 346677777766665431 1122222222334455789999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE 501 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 501 (806)
|.+.+++.+..... .....-.+.-.+-..|++++|++.|-++... +..+..+...+...|-...+..+|++++-+...
T Consensus 509 a~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 99999999886322 2223333444577889999999999876543 234677777888889999999999999988876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 037510 502 LGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM 581 (806)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 581 (806)
. ++.|+....-+.+.|-+.|+-..|.+.+-.- -.-++-++.+..+|...|....-+++++..|++..-
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~yds----------yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS----------YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc----------ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 5 4778899999999999999999999876532 233556889999999999999999999999998765
Q ss_pred CCCCCHhHHHHHHHHH-HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037510 582 GLYPNIVTYGALISGW-CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK 637 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 637 (806)
++|+..-|..++..| .+.|++++|+++|++...+ ++.|...+.-|+..+...|.
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 489999999988765 5789999999999998876 67788888888888877764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-12 Score=120.32 Aligned_cols=455 Identities=13% Similarity=0.139 Sum_probs=255.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
++++..|..+|++.... -.-+...|...+..-.+...+..|..++++.+..-+..| ..|...+.+--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 33444444444444433 122333444444444444455555555555444322211 122222333333455555555
Q ss_pred HHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-C
Q 037510 355 VLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKR-C 433 (806)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~ 433 (806)
+|+...+. .|+...|++.|+.-.+-..++.|..++++.+-. .|++.+|......=.+.|....+..+|...++. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55554443 455555555555555555555555555554432 345555544444444455555555555544442 1
Q ss_pred C-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHc
Q 037510 434 V-CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN--TITFNTMIKGLCKMGKMTEAQK--------IFDKMKEL 502 (806)
Q Consensus 434 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~--------~~~~~~~~ 502 (806)
. ..+...+.+....-.++..++.|.-+|.-.+.. ++.+ ...|..+...--+-|+...... -++.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 011122333333333444555555555555543 1222 2233333333333344322221 23344444
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCH--H-----HHHH---HHHHHHhcCCHhHHH
Q 037510 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSI--D-----MYNY---LISVAFKSRELTSLV 572 (806)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~---l~~~~~~~~~~~~a~ 572 (806)
+ +-|-.+|-..++.-...|+.+...++|+... .+++|-. . +|-. .+-.-....+.+.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAI----------anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAI----------ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHH----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3 4566777777777777788888888887661 2233311 1 1211 222224578899999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHH----HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 573 DLLAEMQTMGLYPNIVTYGALISG----WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 573 ~~~~~~~~~g~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 648 (806)
++++...+. ++...+|+..+--. ..++.++..|.+++..++ |.-|...++...|..=.+.+++|.+.+++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 44455666554333 347788999999998887 55888999999999888999999999999999
Q ss_pred hhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHHhHH
Q 037510 649 VDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG-FSPDNFTYS 727 (806)
Q Consensus 649 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~ 727 (806)
+..++. |-.+|......-...|+.+.|..+|+-++... +......|-
T Consensus 464 le~~Pe--------------------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 464 LEFSPE--------------------------------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred HhcChH--------------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 987643 56677777777778899999999999888742 112234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC-----NSG-----------ELDRAKRLFCKLR 785 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 785 (806)
+.|+-=...|.++.|..+|+++++. .+...+|..+..-=. +.| ....|.++|++..
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 7777778889999999999999883 333334433332111 333 4567777777753
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-13 Score=136.93 Aligned_cols=558 Identities=12% Similarity=0.038 Sum_probs=286.6
Q ss_pred hhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH
Q 037510 148 MGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNV 227 (806)
Q Consensus 148 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 227 (806)
+...|..|+.++|..++..||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 344455556666666666666666655555 5555555444445555555555555555554443 3455
Q ss_pred HHHHHHHHHHHhCCCHHH---HHHHHHHHHH----cCC--------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 228 VTYNSLIDGYVSLGDLNG---AKRVLEWTCE----KGI--------------SRTAVTYTTLTKGYCKQHKMEEAENMLR 286 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~---A~~~~~~~~~----~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 286 (806)
.+|..|..+|...||+.. .++.++.+.. .|+ +.....-...+....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666655433 1221111111 111 0001111223333344455566666665
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 037510 287 RMKEEDDVIVDEYAYGVLIDGYCKVGK-VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLR 365 (806)
Q Consensus 287 ~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 365 (806)
.+.......|... .+.-+..... +++-..+...... .|+..+|..++++-...|+.+.|..++.+|.+.|++
T Consensus 164 ~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 5543322222221 2333333222 2222222222222 478888888888888889999999999999888888
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 366 PDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLL 445 (806)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 445 (806)
.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|....+. .|. +....++.-.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~s-q~~hg~tAav 304 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGS-QLAHGFTAAV 304 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------ccc-chhhhhhHHH
Confidence 888877777766 7777888888888888888899888887777776644422211 111 1222222222
Q ss_pred HHHHhcC-----Ch-----hHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHH
Q 037510 446 DILFNKG-----DF-----YGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG--C-LPNIITYR 512 (806)
Q Consensus 446 ~~~~~~g-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~ 512 (806)
..-.-.| +. ......+....-.|+.....+|...+ -+..+|+-++..++-..+..-. . ..++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 2222222 11 11111222222223333334443333 3334677777777777664321 1 12334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCC-
Q 037510 513 TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP--SIDMYNYLISVAFKSRELTSLVDLLAEMQT----MGLYP- 585 (806)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~p- 585 (806)
.++.-|.+.-+..-...++. + ..++.. +...--.+.....+. +...+..-+..+.. +...|
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~-~----------~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYY-A----------GQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHH-H----------HHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccc
Confidence 55544443222111111111 0 000000 000000011111111 11111111111110 11111
Q ss_pred ------CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh
Q 037510 586 ------NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKY 659 (806)
Q Consensus 586 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 659 (806)
=...-+.++..|+..-+..++...-+.....- -+ ..|..+++.++...+.+.|..+..+....+..-
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~---- 524 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESI---- 524 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhh----
Confidence 11223455556666666666654433333221 11 568888999999999999999888876543210
Q ss_pred hhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCH-HhHHHHHHHHHhcC
Q 037510 660 MASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-GFSPDN-FTYSTLIHGYAAVG 737 (806)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-~~~~~l~~~~~~~g 737 (806)
.-+..-+..+.+.+.+.+....+..+++++.+. -..|+. .+.--+.+..+..|
T Consensus 525 -------------------------~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~ag 579 (1088)
T KOG4318|consen 525 -------------------------HLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAG 579 (1088)
T ss_pred -------------------------hcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhcc
Confidence 124445677788888888888888888888764 223333 35556677778888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 738 DINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+.+.-.++++-+...|+.-+ .-|+....+.++...|.+..+.-.
T Consensus 580 qqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 580 QQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEE 623 (1088)
T ss_pred CHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHH
Confidence 88888888887777665441 224445556777777777666544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-11 Score=114.42 Aligned_cols=461 Identities=11% Similarity=0.048 Sum_probs=343.7
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHH
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 212 (806)
-.++++..|..+|+..+.... .+...|-..+..=.++.....|..++++....-+..|. .|.-.+..--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHH
Confidence 457888999999999998653 57888888899999999999999999999884323232 3334444455679999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037510 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED 292 (806)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 292 (806)
++|+.-.+ ..|+...|++.|..-.+-+.++.|..+++...-. .|++.+|--....=.+.|.+..|..+|+...+.-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999887 4899999999999999999999999999998864 3899999999999999999999999999988752
Q ss_pred CCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHhHHHHH--------HHHHhhC
Q 037510 293 DVI-VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMN-LLICNSLINGYCKLGQVCEAKRV--------LRCMGDW 362 (806)
Q Consensus 293 ~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~ 362 (806)
|.. .+...+.+...--.+...++.|.-+|.-.+..-+.-. ...|......--+-|+.....+. ++.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 210 1122333333333456778889999998887633211 34555555544455664333322 3444554
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-------chHHHHHHHH---HhcCCHHHHHHHHHHHHHc
Q 037510 363 NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV-------VTYNTLLKGL---CRVGDVDEALHLWLMMLKR 432 (806)
Q Consensus 363 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~ 432 (806)
+ +.|-.+|--.++.....|+.+...+.|++.+.+ ++|-. ..|.-+=-+| ....+.+.+.++++..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4 678888888888888899999999999999876 44422 1121111111 2468899999999999984
Q ss_pred CCCCChhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037510 433 CVCPNEVGYCTLLDILF----NKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI 508 (806)
Q Consensus 433 ~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 508 (806)
++...+|+..+--+|+ ++.++..|.+++...+.. .|-..++...|..-.+.++++....+++..++-+ |.+.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 4445666665554444 678999999999988854 7888999999999999999999999999999987 5678
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 588 (806)
.+|......-...|+.+.|..+|+... .+.........|.+.|+.-...|.++.|..+++.+++. .+...
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi--------~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~k 541 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAI--------SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVK 541 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh--------cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccch
Confidence 899988888889999999999999773 22223334567788888888999999999999999986 34444
Q ss_pred HHHHHHHHHH-----ccC-----------ChHHHHHHHHHHHH
Q 037510 589 TYGALISGWC-----DAG-----------MLNKAFKAYFDMIE 615 (806)
Q Consensus 589 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 615 (806)
+|.++..--. +.| .+..|..+|+++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6666554322 333 45677777777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-11 Score=126.55 Aligned_cols=699 Identities=14% Similarity=0.066 Sum_probs=330.1
Q ss_pred hCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhc-------cCCCHHHHHHHHHHH
Q 037510 60 KQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKE-------FAFSPTVFDMILKIY 132 (806)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~l~~~~ 132 (806)
...|..|+..||..++..|+..|+.+.|- +|..|..- +-.....+|+.++.+.+. -.+.+++|..|...|
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAY 93 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence 45788999999999999999999999887 66655321 222234456666554221 135578888888888
Q ss_pred HHcCChhhHHHHHHH-h---h----hcCCCcChhhH---------------HHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037510 133 AQKGMLKNALHVFDN-M---G----KYGCIPSLRSC---------------NCLLSNLVKNGEGYVALLVYEQMMRVGIV 189 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~-~---~----~~~~~~~~~~~---------------~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 189 (806)
...|++.. .+..++ + . ..|+- +...| ...+..+.-.|-++.+++++..+....-
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~- 170 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW- 170 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc-
Confidence 88888665 222222 1 1 11110 11111 1222233333444444444433321100
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 190 PDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLT 269 (806)
Q Consensus 190 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 269 (806)
+ .++..+++-+... .....++........-.|+..+|..++.+-...|+.+.|..++.+|++.|++.+..-|-.|+
T Consensus 171 -~-~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 171 -N-APFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred -c-chHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 0 0111112222221 22333343333322114888899999999999999999999999999999887777666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQV 349 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 349 (806)
-+ .++..-++.+++.|... |+.|+..|+...+-.+..+|....+.+..+ ...-.....+..+.++......+
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~~e~sq----~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYGEEGSQ----LAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred hc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhcccccc----hhhhhhHHHHHHHhcccHhHHHH
Confidence 55 77778888888888887 899999988877777776555222221111 00011222333333331111111
Q ss_pred hH-----HHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-CcchHHHHHHHHHhcCCHHH
Q 037510 350 CE-----AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG--IEP-SVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 350 ~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~-~~~~~~~ll~~~~~~~~~~~ 421 (806)
+. ....+.+..-.|+.....+|...+. ...+|.-++..++-..|..-- ..+ ++..|..++.-|.+.-+..-
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 11 1111111111232222233433332 223577677777766664321 111 23334444444433211110
Q ss_pred HHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCC-------cHHHHHHHHHHHHhcCC
Q 037510 422 ALHLWL--MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNIL----ARGFYK-------NTITFNTMIKGLCKMGK 488 (806)
Q Consensus 422 a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-------~~~~~~~li~~~~~~g~ 488 (806)
...++. +.+.. ..+....-.+.....+. +...+.+-+.... .+.+.+ -...-+.++..++..-+
T Consensus 398 ~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred HHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 000000 00000 00000000011111100 1111111111000 000000 11122334444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSREL 568 (806)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 568 (806)
..+++..-+.....-+ ...|..+++-++...+.+.|..+.++... ....+..+..-+..+.+.+.+.+..
T Consensus 475 ~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~-------~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDT-------RDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcc-------cchhhhcccHhHHHHHHHHHHhHHH
Confidence 4444433332222111 13466666666666666666666665522 1222333444555666666666666
Q ss_pred hHHHHHHHHHHHCCC-CCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037510 569 TSLVDLLAEMQTMGL-YPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQ 646 (806)
Q Consensus 569 ~~a~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 646 (806)
..+..++.++.+.-. .|+ ..+.-.+++.....|+.+.-.++++-+...|+..+ ..++....+.++...|++.++
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 666666666655211 111 22333344444555666655555555544433221 111111122222222222222
Q ss_pred HHhhC-CCCCCh-----------------------------------------------hhhhhhhhhhhHHHH---Hhh
Q 037510 647 KMVDF-DFVPDL-----------------------------------------------KYMASSAINVDAQKI---AMS 675 (806)
Q Consensus 647 ~~~~~-~~~p~~-----------------------------------------------~~~~~~~~~~~~~~~---~~~ 675 (806)
...+. .+.|-. .+....|...+.... ...
T Consensus 621 ~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll 700 (1088)
T KOG4318|consen 621 PEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELL 700 (1088)
T ss_pred HHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHH
Confidence 22111 111100 000000111100000 000
Q ss_pred hHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 037510 676 LDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG---DINEAFNLRDEMLKI 752 (806)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 752 (806)
+..+. +.....-|+..|.+.|+++.|..+|.++. ..|...+...|+..+.+.. ++-++....+++.+.
T Consensus 701 ~elt~------~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~ 771 (1088)
T KOG4318|consen 701 LELTH------ELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASEL 771 (1088)
T ss_pred HHHHh------HhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhc
Confidence 00000 11122237788999999999999999987 5688887778888777655 344444444444442
Q ss_pred C-CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 753 N-LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 753 ~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
. .-| +...|.--+...++....+-|.+.|.+..++....+..++..++.++
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L 824 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCL 824 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 1 111 22223333334445555668899999999887777788887777665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-12 Score=123.03 Aligned_cols=509 Identities=15% Similarity=0.076 Sum_probs=317.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
+..-+..+++-+..+.++..|.-+-+++...+..|+.. --+..++.-.|+++.|..++..-.-.+ .|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHH
Confidence 44556667776777778888888888887766555443 346677888888888888776553322 57777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
++.+..++++|..++...... -++..|..--. ...-..+.+. ++... ......+-.=...|....+.+
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~----~~~f~yy~~~~--~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVE----TNPFSYYEKDA--ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHhcccchh----hcchhhcchhh--hceeccCccc----ccccc--cchhceeeeeeehhhhhccHH
Confidence 888888888888888733111 01111110000 0000000010 00000 001111111122333444556
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhc-CCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHH-HhcCCHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE-CDMTEAFRLCAEMLRQ-GIEPSVVTYNTLLKGL-CRVGDVDEALHLWL 427 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~ 427 (806)
+|...|.+.... |...|..+....... -..++-.++++.+--. -..-+......+.... ++..+ +.....-.
T Consensus 159 ~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~ 233 (611)
T KOG1173|consen 159 EARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNE 233 (611)
T ss_pred HHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCc
Confidence 666666655432 333332222211110 0011112222210000 0000111111111111 00000 00000000
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 428 MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
+..-.+..-+........+-+...+++.+..++.+++.+.. ++....+-.-|..+...|+..+-..+-.++++.- |..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCC
Confidence 01111234466667777888889999999999999999874 5566666667778899999998888888888874 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 586 (806)
..+|-++.--|...|+..+|++.|.+. ..+.|. ...|-.+...|.-.|..|.|...+....+. ++-.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKa-----------t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~ 379 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKA-----------TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGC 379 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHH-----------hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCC
Confidence 789999999999999999999999866 233333 456888899999999999999998877663 1111
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD--FVPDLKYMASSA 664 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~ 664 (806)
..-+-.+..-|.+.++.+.|.+.|.++... .+.|+..++-+.-.....+.+.+|..+|+.....- ..+.
T Consensus 380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-------- 450 (611)
T KOG1173|consen 380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-------- 450 (611)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--------
Confidence 122333445588899999999999999875 35578888888888888999999999999887321 0000
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAF 743 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 743 (806)
. .--..+++.|+++|.+.+++++|+..+++.+. ..|.. .+|.+++..|...|+++.|+
T Consensus 451 ------------------~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 451 ------------------K-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred ------------------c-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHH
Confidence 0 01234799999999999999999999999999 66755 59999999999999999999
Q ss_pred HHHHHHHHcCCCCChhcHHHHHH
Q 037510 744 NLRDEMLKINLVPNIATYNSLVS 766 (806)
Q Consensus 744 ~~~~~~~~~~~~p~~~~~~~l~~ 766 (806)
+.|.+.+. +.||-.+...++.
T Consensus 510 d~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 510 DHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHh--cCCccHHHHHHHH
Confidence 99999998 7887655444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-08 Score=102.99 Aligned_cols=548 Identities=14% Similarity=0.144 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKY-GCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
|.++...+....++|++...+..|+..+.. .+......|...+......+-++.++.+|++.++. .|. .-+--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 556666667777888888888888877654 33344557888888888888888888888888773 333 3566777
Q ss_pred HHHhcCChhHHHHHHHHHHHcC------CCcCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCCC--hhhHHHHH
Q 037510 201 AYCKEKSMEKALDFVKEMENLG------FELNVVTYNSLIDGYVSLGDLNG---AKRVLEWTCEKGISRT--AVTYTTLT 269 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~li 269 (806)
-+++.+++++|.+.+...+... -+.+...|.-+-....+.-+.-. ...++..+...- +| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHH
Confidence 7888888888888887775321 13344556665555555433322 222333332221 22 34578888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCC
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEML-KTGLEMNLLICNSLINGYCKLGQ 348 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 348 (806)
+-|.+.|.+++|.++|++..+. ...+.-|..+.+.|+.-....-+..+= -.. +.+-+-+.. +
T Consensus 256 dYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------d 318 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------D 318 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------h
Confidence 8888888888888888887654 123444556666655422211111110 000 111111111 1
Q ss_pred HhHHHHHHHHHhhCC-----------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------chHHHHHH
Q 037510 349 VCEAKRVLRCMGDWN-----------LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV------VTYNTLLK 411 (806)
Q Consensus 349 ~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~ 411 (806)
++-...-|+.+.+.. -+.++..|..-+. +..|+..+-...+.+..+. +.|.. ..|..+.+
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 112222222222111 1334444544333 3466777777788777764 33322 34677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------------C
Q 037510 412 GLCRVGDVDEALHLWLMMLKRCVCPN---EVGYCTLLDILFNKGDFYGAVKLWNNILARGFY-----------------K 471 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~ 471 (806)
.|-..|+++.|..+|++..+...+.- ..+|..-..+-.+..+++.|+++.+......-. .
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888999999999988877533221 346666666677778888888888776643211 1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC
Q 037510 472 NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS 551 (806)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 551 (806)
+...|...++..-..|-++....+++.+.+..+. ++.........+-...-++++.++|++- ...-..|+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErg---------I~LFk~p~ 545 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERG---------ISLFKWPN 545 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcC---------CccCCCcc
Confidence 3345666677777778899999999999887543 3322222223334455578888888743 11112233
Q ss_pred -HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCC--HH
Q 037510 552 -IDMYNYLISVAFK---SRELTSLVDLLAEMQTMGLYPNIVTYGALISG--WCDAGMLNKAFKAYFDMIEKGFSPN--VA 623 (806)
Q Consensus 552 -~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 623 (806)
...|+..+..+.+ ...++.|..+|++..+ |++|...-+..|+-+ -.+.|-...|+.+++++... +++. ..
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~ 623 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 3566665555543 3468999999999998 677765443333322 23568888899999987654 3443 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.|+..|.--...=-+.....+++++++.- |+.. -....--....-++.|.
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~L--p~~~----------------------------~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESL--PDSK----------------------------AREMCLRFADLETKLGE 673 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhC--ChHH----------------------------HHHHHHHHHHHhhhhhh
Confidence 56666654444444555677777777652 2210 00011122344466777
Q ss_pred hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCC
Q 037510 704 VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGD 738 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~ 738 (806)
.+.|..++..-.+. ..|.. .-|.+.-.-=.+.|+
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 77777777665552 23322 345555555566666
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-12 Score=132.11 Aligned_cols=251 Identities=14% Similarity=0.047 Sum_probs=147.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKMKELGCLPNIITYR--TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISV 561 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 561 (806)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+ ... .+.+......+...
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~---------~~~-~P~~~~al~ll~~~ 196 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKL---------LEV-APRHPEVLRLAEQA 196 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHH---------Hhc-CCCCHHHHHHHHHH
Confidence 4555555555555555543 23322111 2234455555555555555544 111 12234455555555
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 562 AFKSRELTSLVDLLAEMQTMGLYPNI-------VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+.++..-+. .+.++.....+...+..
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 55555566666555555554332211 12222222222333444455555554332 24466677777778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 635 LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 635 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.|+.++|.+.+++..+..+ ++... ++.+....++.+++++.++++
T Consensus 276 ~g~~~~A~~~L~~~l~~~~---------------------------------~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQY---------------------------------DERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC---------------------------------CHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 8888888888877776432 22211 233444557788888888888
Q ss_pred HHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 715 LLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 715 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+ ..|++. .+..++..|.+.|+|++|.+.|+++.+ ..|+..++..|..++.+.|+.++|..++++-..
T Consensus 321 lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77 567665 567788888888888888888888887 567777777788888888888888888877543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-12 Score=131.12 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=169.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 037510 449 FNKGDFYGAVKLWNNILARGFYKNTITFN--TMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEE 526 (806)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 526 (806)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++++.+.. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555443 22222111 22344555566666666666665554 3345555555666666666666
Q ss_pred HHHHHHHHHhcccChhhhhcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 037510 527 AFKIKNLMERREILPSMEKEAIVPSI-------DMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599 (806)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 599 (806)
|.+++..+. +....++. ..|..++.......+.+...++++.+.+. .+.++.....+..++..
T Consensus 206 a~~~l~~l~---------k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 206 LLDILPSMA---------KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHHHHH---------HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 666666552 22211111 12222333333344555666666665443 24467788889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
.|+.++|.+.+++..+. +|+.... ++.+....++.+++.+.+++..+..+.
T Consensus 276 ~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~------------------------- 326 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD------------------------- 326 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-------------------------
Confidence 99999999999999885 5555322 233344569999999999999987633
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 680 ARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+..+.+++..+.+.|++++|.+.|+++.+ ..|+..++..|..++.+.|+.++|.+++++.+.
T Consensus 327 -------~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -------TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888999999999999999999999999 789999999999999999999999999999876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-12 Score=132.36 Aligned_cols=290 Identities=12% Similarity=0.049 Sum_probs=168.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHH
Q 037510 450 NKGDFYGAVKLWNNILARGFYKNT-ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI--ITYRTLSDGYCKVGNLEE 526 (806)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 526 (806)
..|+++.|.+.+.+..+.. |+. ..+-.......+.|+.+.|..++.+..+.. |+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3455555555555544432 222 222223344455566666666665554432 222 222223455555666666
Q ss_pred HHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH---HHHccCCh
Q 037510 527 AFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALIS---GWCDAGML 603 (806)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~---~~~~~g~~ 603 (806)
|...++.+ ... .+.+..+...+...+...|++++|.+.+..+.+.+..+.......-.. .....+..
T Consensus 172 Al~~l~~l---------~~~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 172 ARHGVDKL---------LEM-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHHHHH---------HHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555 111 122344555555666666666666666666665543222211111111 11222333
Q ss_pred HHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 604 NKAFKAYFDMIEKGF---SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 604 ~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
+++.+.+..+.+... +.+...+..++..+...|+.++|.+.+++..+..+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~------------------------ 297 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR------------------------ 297 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc------------------------
Confidence 333445555544321 13777888888888889999999999988888654320
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF---TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
+..............++.+.+.+.+++..+ ..|+.. ...++++.|.+.|+|++|.+.|++.......|+
T Consensus 298 ------~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 298 ------AISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred ------cchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 100012222233445777888888888888 567665 456889999999999999999995444336788
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 758 IATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 758 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
..++..+...+.+.|+.++|.+++++..
T Consensus 370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 370 ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888899999999999999999998854
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-11 Score=114.87 Aligned_cols=306 Identities=11% Similarity=0.085 Sum_probs=208.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCh
Q 037510 447 ILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGC--LPNIITYRTLSDGYCKVGNL 524 (806)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 524 (806)
++....+.+++..-.+.....|++.+...-+....+.....++++|+..|+++.+... -.|..+|+.++-+ +..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 3333445555555555555555555544444444455555666777777776666531 1234555544322 22211
Q ss_pred HH---HHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 037510 525 EE---AFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG 601 (806)
Q Consensus 525 ~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 601 (806)
.- |..+++ - -+-.++|.-.+.+.|.-.++.+.|...|+...+.+ +-....|+.+..-|....
T Consensus 314 kLs~LA~~v~~------------i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 314 KLSYLAQNVSN------------I--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHHHHHHHHHH------------h--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhc
Confidence 11 111111 1 11223455566777788888888888888888763 223557888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhh
Q 037510 602 MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESAR 681 (806)
Q Consensus 602 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (806)
+...|++.|+.+++-. +.|-..|-.|+++|.-.+...=|+-+|+++.... |
T Consensus 379 Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--P-------------------------- 429 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--P-------------------------- 429 (559)
T ss_pred ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--C--------------------------
Confidence 9999999999999863 5588899999999999999999999999988754 2
Q ss_pred cCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC
Q 037510 682 SLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK----INLVPN 757 (806)
Q Consensus 682 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 757 (806)
.|+..|.+|+.+|.+.++.++|+.-|......| ..+...+..|+..|-+.++.++|...|++-++ .|...+
T Consensus 430 ----nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 430 ----NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred ----CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 488899999999999999999999999998854 23446888999999999999999999988876 232222
Q ss_pred --hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 758 --IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 758 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
....--|..-+.+.+++++|..+...... ..+...--+.|+..+.+
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLK--GETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--CCchHHHHHHHHHHHHH
Confidence 22223355667788999999888777665 26777777777766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-15 Score=145.36 Aligned_cols=260 Identities=17% Similarity=0.152 Sum_probs=96.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHH
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELG-CLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNY 557 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (806)
+...+.+.|++++|.++++...... .+.|...|..+.......++++.|...++.+ ...+.. +...+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l---------~~~~~~-~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKL---------LASDKA-NPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------cccccc-ccccccc
Confidence 3455556666666666664433322 1233344444555555566666666666655 222111 3334444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG-FSPNVAICSKLVSTLCRLG 636 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 636 (806)
++.. ...+++++|.+++....+. .+++..+..++..+...|+++++.++++.+.... .+.+...|..+...+.+.|
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 5544 4666666666666655444 3455556667777777788888888877766432 2446667777777778888
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 637 KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 637 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+.++|...++++++..+. |..+.+.++..+...|+.+++.++++...+
T Consensus 161 ~~~~A~~~~~~al~~~P~--------------------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD--------------------------------DPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT---------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--------------------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888888888776532 566777788888888888888777777776
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 717 TGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 717 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.. +.|...+..++.+|...|+.++|+..|++..+.+ +.|+.+...+++++...|+.++|.++..++.
T Consensus 209 ~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 209 AA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 32 2334466778888888888888888888887732 2377777888888888888888888877654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-12 Score=130.64 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=101.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC-SKLVST--LCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
++..+..+...+...|+.++|.+.+++.++.. ||.... ..++.. ....++.+.+.+.+++..+..+.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-------- 331 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-------- 331 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC--------
Confidence 67777888888889999999999999998863 333210 012222 23457788888888888876532
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCCh--HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNY--VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 740 (806)
|+ ....+++..+.+.|++++|.+.|+........||...+..++..+.+.|+.+
T Consensus 332 ------------------------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 332 ------------------------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred ------------------------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 44 6778899999999999999999995333337899988889999999999999
Q ss_pred HHHHHHHHHHH
Q 037510 741 EAFNLRDEMLK 751 (806)
Q Consensus 741 ~A~~~~~~~~~ 751 (806)
+|.+++++.+.
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999999765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=136.78 Aligned_cols=285 Identities=15% Similarity=0.134 Sum_probs=222.0
Q ss_pred CChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 037510 452 GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG--CLPNIITYRTLSDGYCKVGNLEEAFK 529 (806)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 529 (806)
-+..+|...|..+... +....++...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+.-+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3578899999985554 34455777888899999999999999999998753 123567777776544321 2222
Q ss_pred HHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHH
Q 037510 530 IKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP-NIVTYGALISGWCDAGMLNKAFK 608 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 608 (806)
++..- .-..-+..+.+|-++.++|.-+++.+.|++.|++.... .| ...+|+.+..-+.....+|.|..
T Consensus 408 ~Laq~---------Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 408 YLAQD---------LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHH---------HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH
Confidence 22211 12223456789999999999999999999999998875 45 56788888888888899999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCC
Q 037510 609 AYFDMIEKGFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPN 687 (806)
Q Consensus 609 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (806)
.|+.++.. .| +-..|..++-.|.++++++.|.-.|+++.+..+. +
T Consensus 477 ~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~--------------------------------n 522 (638)
T KOG1126|consen 477 SFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS--------------------------------N 522 (638)
T ss_pred HHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc--------------------------------c
Confidence 99988854 22 3345666778899999999999999999887643 7
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
.+....++..+-+.|+.++|+++++++.. +.|... .--..+..+...+++++|+..++++.+ +.| +...+..++
T Consensus 523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llg 598 (638)
T KOG1126|consen 523 SVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLG 598 (638)
T ss_pred hhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 78888899999999999999999999999 677654 555677888899999999999999998 667 556778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
..|.+.|+.+.|+.-|-.+.+ ..|-
T Consensus 599 ki~k~~~~~~~Al~~f~~A~~--ldpk 623 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWALD--LDPK 623 (638)
T ss_pred HHHHHHccchHHHHhhHHHhc--CCCc
Confidence 999999999999999999887 4443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-13 Score=133.84 Aligned_cols=281 Identities=14% Similarity=0.100 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 418 DVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARG--FYKNTITFNTMIKGLCKMGKMTEAQKI 495 (806)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 495 (806)
+..+|...|.....+ +.........+..+|...+++++|.++|+.+.+.. ...+..+|.+.+..+-+. -+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHH
Confidence 466777777774443 33334566777788888888888888888877652 112456676666554321 111222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSRELTSLVDL 574 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 574 (806)
-+.+.+.. +..+.+|..+.++|.-+++.+.|++.|++. ..+.| ...+|+.+..-+.....+|.|...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RA-----------iQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRA-----------IQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHh-----------hccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 23344433 445678888888888888888888888755 23444 456677777777777778888888
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 575 LAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 575 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
|+..+.. .|. -..|-.+...|.+.++++.|.-.|+++++-+ +.+.+....++..+-+.|+.|+|+.+++++...+.
T Consensus 478 fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 478 FRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 8776643 221 2234445566778888888888888877653 33556666677777788888888888888877654
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHG 732 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 732 (806)
+ |+..--..+..+...+++++|+..|+++.+ +.|+.. .|..++..
T Consensus 555 k--------------------------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki 600 (638)
T KOG1126|consen 555 K--------------------------------NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI 600 (638)
T ss_pred C--------------------------------CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 4 444444556677777888888888888887 777764 67777888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037510 733 YAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~ 751 (806)
|.+.|+.+.|+.-|.-|.+
T Consensus 601 ~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHccchHHHHhhHHHhc
Confidence 8888888888887777776
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-10 Score=113.51 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=229.0
Q ss_pred CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 037510 330 EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTL 409 (806)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 409 (806)
.-+......-.+-+...+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+-.++.+. .+-...+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666677778888999999999999988875 777778888888899999999999998999886 33467899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 037510 410 LKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKM 489 (806)
Q Consensus 410 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 489 (806)
..-|.-.|+..+|++.|.+...-.. .=...|..+...|.-.|..+.|+..+..+.+. ++.....+--+..-|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 9999999999999999998766421 13457889999999999999999999887764 122222233344557778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
+-|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+.... +.+...... .....+++.|...+.+.+.++
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~--~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE--VIKSVLNEK-IFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH--Hhhhccccc-cchhHHHHhHHHHHHHHhhHH
Confidence 99999999998875 66888888888888889999999999988741 111111111 135667888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
+|+..+++..... +-+..++.++.-.|...|+++.|++.|.+.+.. .|+..+...++..
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 9999999988863 557888999988899999999999999998864 7777666665553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=142.70 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHcCChhhHHHHH
Q 037510 129 LKIYAQKGMLKNALHVF 145 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~ 145 (806)
...+.+.|++++|++++
T Consensus 15 A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVL 31 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33344444444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-09 Score=103.78 Aligned_cols=491 Identities=14% Similarity=0.122 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHhHHHH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG------IVPDVFTCSI 197 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~------~~~~~~~~~~ 197 (806)
++...++.....|.++-++.++++.++. ++..-+--+..+++.+++++|-+.+...+... -+.+-..|..
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 4444555555667777777777777773 55556667777777788888777777665431 1222333444
Q ss_pred HHHHHHhcCCh---hHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037510 198 VVNAYCKEKSM---EKALDFVKEMENLGFELN--VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGY 272 (806)
Q Consensus 198 l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 272 (806)
+-....+.-+. -....+++.+... -+| ...|++|.+-|.+.|.++.|..++++....- .++.-|+.+.+.|
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 43333332221 1233344444332 233 3467788888888888888888888776632 2333344444444
Q ss_pred HhcC----------------------CHHHHHHHHHHHHhcCC----------CCCChHhHHHHHHHHHhcCChHHHHHH
Q 037510 273 CKQH----------------------KMEEAENMLRRMKEEDD----------VIVDEYAYGVLIDGYCKVGKVDEAIRV 320 (806)
Q Consensus 273 ~~~g----------------------~~~~a~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~a~~~ 320 (806)
.+-. +++-.+.-|+.+..... .+.++..|..-.. +..|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 3211 12222233333332211 1112223333222 235677788888
Q ss_pred HHHHHHCCCCCC------hhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC---hhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 321 LNEMLKTGLEMN------LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD---SFSFNTLVDGYCRECDMTEAFRLC 391 (806)
Q Consensus 321 ~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 391 (806)
|.++++. +.|. ...|..+...|-..|+++.|..+|++..+-..+.- ..+|......-.++.+++.|++++
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8888875 2332 23678888999999999999999999876543322 345555666667788999999998
Q ss_pred HHHHHCCCC----------C-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 037510 392 AEMLRQGIE----------P-------SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDF 454 (806)
Q Consensus 392 ~~m~~~g~~----------~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (806)
++....--. | +...|...++.--..|-++....+++++++..+.. +.........+-...-+
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYF 527 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHH
Confidence 887542111 1 12334555555556677788888888888765432 22223333344455667
Q ss_pred hHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHH
Q 037510 455 YGAVKLWNNILARGFYKNT-ITFNTMIKGLCK---MGKMTEAQKIFDKMKELGCLPNIIT--YRTLSDGYCKVGNLEEAF 528 (806)
Q Consensus 455 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~ 528 (806)
+++.++|++-+..--.|+. ..|+..+..+.+ ..+++.|..+|++..+ |++|...- |......--+.|....|.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888776655333443 356666555443 2357888899998888 65655422 222222223457777788
Q ss_pred HHHHHHHhcccChhhhhcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH---HHHHHHHHccCCh
Q 037510 529 KIKNLMERREILPSMEKEAIVP--SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY---GALISGWCDAGML 603 (806)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~ 603 (806)
.++++.. .+.++ -..+||..|.-....=.+.....+|++..+. -|+...- ....+.-++.|.+
T Consensus 607 siyerat----------~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 607 SIYERAT----------SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHHHHH----------hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhH
Confidence 8887762 22222 2456776665544444445556667766664 4454332 2233445677888
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 037510 604 NKAFKAYFDMIEK-GFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 604 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
+.|..+|....+- ....+...|.+.-.-=.+.|+-+
T Consensus 675 dRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 675 DRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 8888888776653 22234556666655556777733
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-10 Score=109.00 Aligned_cols=363 Identities=12% Similarity=0.037 Sum_probs=242.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--HHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLL--ICN 337 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 337 (806)
.|...+-...-.+-+.|....|++.|...... .+-.-..|..|..... + ++........+ +.|.. .--
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccchHHHHH
Confidence 44444444445566778888888888877654 2223333433333221 2 22222222222 21211 112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcchHHHHHHHHHh
Q 037510 338 SLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIE--PSVVTYNTLLKGLCR 415 (806)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~ 415 (806)
-+..++-...+.+++..-.+.....|++.+...-+....+.....++++|+.+|+++.++..- -|..+|+.++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 234555566678888888888888887666665566666666788899999999999887321 245677766533 3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 416 VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKI 495 (806)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 495 (806)
..+.. +.++.+-.-.-.+-.+.|...+.+.|.-.++.+.|...|+..++.+ +.....|+.+..-|...++...|++-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 32221 2222222211123356688888899999999999999999999875 44567788888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLL 575 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
++..++.+ |.|-..|-.+.++|.-.+...-|+-+|++. ..-.+.|...|.+|..+|.+.++.++|++.|
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA----------~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKA----------LELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHH----------HhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999886 668889999999999999999999888865 2223447888999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK----GFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 576 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
......| ..+...+..+.+.|.+.++.++|...|.+.++. |...+ .....-|..-+.+.+++++|........
T Consensus 456 krai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8888765 335577888888899999999998888887752 22222 1222224444566777777766555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-09 Score=108.73 Aligned_cols=558 Identities=14% Similarity=0.158 Sum_probs=295.1
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCC-------------CchhhHHHH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNY-------------AGFLIWDEL 111 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-------------~~~~~~~~l 111 (806)
+.+|+.++.|-.-+....+ +...++.++.++......+.+.+.+-.+++...... .++.+-+.+
T Consensus 522 r~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAI 598 (1666)
T KOG0985|consen 522 RSSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAI 598 (1666)
T ss_pred ccChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHH
Confidence 5678888887666542222 334566677777776666666666666554321110 011111222
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHH----HHHHHHcCChHHHHHHHHHHHHCC
Q 037510 112 VRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCL----LSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
+. ..-++..-...+...|-++|-...|++.+..+... +..++.-+.+ +-.|.-.-.++++.+.++.|+..+
T Consensus 599 Lg---N~mFtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N 673 (1666)
T KOG0985|consen 599 LG---NDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN 673 (1666)
T ss_pred Hh---ccccccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11 11122222456778889999999999888876542 1222222211 334555667899999999999998
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-----------CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH----
Q 037510 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL-----------GFELNVVTYNSLIDGYVSLGDLNGAKRVLEW---- 252 (806)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---- 252 (806)
+..|..+.-.+..-|+.+=-.+..+++|+..... ++..|..+.--.|.+.|+.|++.+.+++.++
T Consensus 674 irqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Y 753 (1666)
T KOG0985|consen 674 IRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCY 753 (1666)
T ss_pred HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccC
Confidence 8888888777777777766667777777766542 2445666667788999999999888776543
Q ss_pred --------HHHcCCC---C-----ChhhHHHHHHHHHhcCCHHHHHHHHHH-------------HHhcCCCCCChHh---
Q 037510 253 --------TCEKGIS---R-----TAVTYTTLTKGYCKQHKMEEAENMLRR-------------MKEEDDVIVDEYA--- 300 (806)
Q Consensus 253 --------~~~~~~~---~-----~~~~~~~li~~~~~~g~~~~a~~~~~~-------------~~~~~~~~~~~~~--- 300 (806)
+++..+. | |-.-+..=+-.|.-.++..+-+++|-+ +.+. .+ +...
T Consensus 754 dpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~-dC--~E~~ik~ 830 (1666)
T KOG0985|consen 754 DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV-DC--SEDFIKN 830 (1666)
T ss_pred CHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC-CC--cHHHHHH
Confidence 1121110 1 111111111112222222333333222 1111 01 1111
Q ss_pred ----------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHH-H---HHHH------Hh
Q 037510 301 ----------YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAK-R---VLRC------MG 360 (806)
Q Consensus 301 ----------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~---~~~~------~~ 360 (806)
..-+..-.-+.+++.--..+++.....|.. ++.++|+|...|...++-.+-. + .++. ..
T Consensus 831 Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 831 LILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 122333344566777777888888888876 8999999988877655422110 0 0110 01
Q ss_pred hC-----------C--------CCCChhcHHHHHHHHHhcCCH---HHH--------HHHHHHHHHCCCC--CCcchHHH
Q 037510 361 DW-----------N--------LRPDSFSFNTLVDGYCRECDM---TEA--------FRLCAEMLRQGIE--PSVVTYNT 408 (806)
Q Consensus 361 ~~-----------~--------~~~~~~~~~~li~~~~~~g~~---~~a--------~~~~~~m~~~g~~--~~~~~~~~ 408 (806)
++ | +-.....|-...+.+.+..+. .+. .+++++..+.+++ .|+...+.
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 11 0 000011222233333333332 222 3567777665543 24455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------------------
Q 037510 409 LLKGLCRVGDVDEALHLWLMMLKRCV--CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARG------------------ 468 (806)
Q Consensus 409 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------ 468 (806)
.+.++...+-..+-+++++++.-... ..+...-+.|+-... .-+.....+..+++-.-+
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHH
Confidence 77888888888888888888764321 111112222222222 222333333333332211
Q ss_pred -----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhh
Q 037510 469 -----FYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSM 543 (806)
Q Consensus 469 -----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 543 (806)
+..+....+.++. ..+..+.|.++-++. ..+..|..+..+-.+.|...+|.+-|-+.
T Consensus 1069 ~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--------- 1130 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--------- 1130 (1666)
T ss_pred HHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc---------
Confidence 0112222222221 113333443333322 23456666666666677776666655433
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 037510 544 EKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA 623 (806)
Q Consensus 544 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 623 (806)
.|+..|..+++...+.|.+++....+...+++.-.|... +.|+-+|++.++..+-.++. .-|+..
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 355566667777777777777777766666655444443 35666677666665543332 235666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~ 648 (806)
....+++-|...|.++.|.-++...
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 6666666666666666666555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-11 Score=115.77 Aligned_cols=229 Identities=17% Similarity=0.165 Sum_probs=169.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++..+.|++.. .. -+.++.+|-.-...+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~---------~l-dp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAE---------DL-DPENPDVYYHRGQMR 404 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHH---------hc-CCCCCchhHhHHHHH
Confidence 3445788888888888887753322 236667778888888888888888662 21 233566777777788
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
.-.+++++|..-|++.+... +.+...|.-+.-+..+.++++++...|++.+++ ++..+..|+.....+..+++++.|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 88888999999999888752 223455666666666888999999999999887 5667889999999999999999999
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
+.++.++.....-+...+ .+-+.+.-.++-.-.+ +++.+|+.++++.++ +.|.
T Consensus 483 k~YD~ai~LE~~~~~~~v------------------------~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpk 535 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIV------------------------NAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPK 535 (606)
T ss_pred HHHHHHHhhccccccccc------------------------cchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCch
Confidence 999999876433211110 1112222223322233 899999999999999 7787
Q ss_pred H-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 723 N-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 723 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
. .+|.+|+..-.+.|+.++|+++|++...
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6 5999999999999999999999999876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-09 Score=110.59 Aligned_cols=238 Identities=13% Similarity=0.036 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH
Q 037510 259 SRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNS 338 (806)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (806)
..+...|..|.-++...|+++.+.+.|++.... ..-....|..+...+...|.-..|..++++.......|+..+--.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 344555555555555556666666666555432 223344555555555555555555555555444332232222222
Q ss_pred HH-HHHH-hcCCHhHHHHHHHHHhhC--CC--CCChhcHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 037510 339 LI-NGYC-KLGQVCEAKRVLRCMGDW--NL--RPDSFSFNTLVDGYCRE-----------CDMTEAFRLCAEMLRQGIEP 401 (806)
Q Consensus 339 li-~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~ 401 (806)
++ ..|. +.+.+++++++-.+..+. +. ......|-.+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22 1121 234444444444443331 00 11122222222222211 1233455555555554322
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (806)
|......+.--|+..++++.|.+..++.++.+-..+...|..+.-.+...+++.+|+.+.+..... +..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 222222223334455566666666666666544455566666666666666666666666655543 1112221112222
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMK 500 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~ 500 (806)
.-...++.+++......+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 2223455555555555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-10 Score=113.05 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=148.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 037510 379 CRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAV 458 (806)
Q Consensus 379 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (806)
.-.|+...|.+.|+..++....+ ...|..+...|....+.++.+..|+...+.. +.+..+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34678888888888888764332 2227777788888888888888888888763 336677777778888888899999
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 037510 459 KLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERRE 538 (806)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (806)
.-|++.+... +.+...|-.+..+..+.++++++...|++..+. +|.-+..|+....++...++++.|.+.|+...+.+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999888764 335566666777777888999999999998876 35557888888999999999999999988763211
Q ss_pred cChhhhhcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 037510 539 ILPSMEKEAIVPS--IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614 (806)
Q Consensus 539 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 614 (806)
.. ..++..+ +.+-..++..-. .+++..|.+++.+..+.. +-....|.+|...-.+.|+.++|+++|++..
T Consensus 493 ~~----~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PR----EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cc----cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 10 0111111 111111111111 255666666666655542 1123345555555566666666666665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-09 Score=99.96 Aligned_cols=450 Identities=15% Similarity=0.094 Sum_probs=233.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAEN 283 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 283 (806)
...++..|+.+++.-...+-+....+-.-+..++...|++++|..++..+.+.+ .++...+..|.-++.-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 344555555555544433222222233334455566666666666666665533 2455555556555556666666665
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037510 284 MLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN 363 (806)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 363 (806)
+..... .++.....+.....+.++-++-..+.+.+... ..---+|.......-.+++|++++.+....
T Consensus 113 ~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 113 IAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 544322 23334444445555566655555555544332 122233444444445667777777766554
Q ss_pred CCCChhcHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037510 364 LRPDSFSFNTLV-DGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYC 442 (806)
Q Consensus 364 ~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 442 (806)
.|+....|..+ -+|.+..-++-+.++++--+++ ++.+....+..+....+.=.-..|.+-...+.+.+... |
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~- 253 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y- 253 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-
Confidence 24444444433 3445566666666666666554 22233344444433333333333444344444432211 1
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 443 TLLDILFNK-----GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDG 517 (806)
Q Consensus 443 ~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (806)
..+.-+++. ..-+.|++++-.+.+. -| ..--.++-.|.+++++.+|..+.+++.- .++.-|-.-.-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVV 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHH
Confidence 112222222 2446677766555543 12 2233455667888999999888877642 223333222223
Q ss_pred HHhcCC-------hHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhH
Q 037510 518 YCKVGN-------LEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVT 589 (806)
Q Consensus 518 ~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 589 (806)
+...|+ ..-|...|... ...+..-| +.--......+.-..++++.+..+..+...-...|.+.
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlV---------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLV---------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHh---------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 333333 33444444443 33332222 22334455556666677777777777665433333333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
+ .+..+++..|++.+|.++|-+.....++.+..-...+..+|.+.|+++.|..++-++-..+
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~----------------- 458 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS----------------- 458 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-----------------
Confidence 3 4667777788888888888776544333333333455677788888888877665542211
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTY 726 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 726 (806)
........+..-|.+.+.+--|-+.|+.+.. ..|+..-|
T Consensus 459 ----------------e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 459 ----------------ERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 0112334445667777777777777877777 56666555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=110.07 Aligned_cols=290 Identities=16% Similarity=0.128 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 417 GDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
|++..|+++..+..+.+.. ....|..-+.+--+.|+.+.+-.++.++.+..-.++....-+....+...|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555544443322 223334444444455555555555555555422334444445555566666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLA 576 (806)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
+++.+.+ +-+........++|.+.|++.....+...+ .+.+.-.+...-
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L---------~ka~~l~~~e~~--------------------- 225 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKL---------RKAGLLSDEEAA--------------------- 225 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHH---------HHccCCChHHHH---------------------
Confidence 6666655 345556666666666677766666666666 232222221110
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 577 EMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 577 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
++ ...+|..+++-....+..+.-...|++.-.+ .+.++..-.+++.-+.++|+.++|.++.++..++...|+
T Consensus 226 ~l-------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 226 RL-------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HH-------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 00 1112333333333333333323333333222 233444444455555555666666666655555554431
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHh
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAA 735 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 735 (806)
. ...-.+.+-++.+.=++..++..+ ..|+. ..+.+|+..|.+
T Consensus 298 ----------------------------------L-~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 298 ----------------------------------L-CRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALK 340 (400)
T ss_pred ----------------------------------H-HHHHhhcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHH
Confidence 0 011123344444444444454444 23332 345555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.+.|.+|.+.|+.+++ ..|+..+|+.+.++|.+.|+.++|.+..++..
T Consensus 341 ~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 341 NKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6666666666655555 44555555555566666666655555555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-09 Score=107.28 Aligned_cols=507 Identities=15% Similarity=0.068 Sum_probs=279.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDG---YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEE 280 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (806)
+.++.+.++.-+......++..+..++..+-.. |...|+.+++ .++..+.+. ..|....+.+.+..
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es-~i~Re~~~d~ilsl--------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEES-LIPRENIEDAILSL--------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhh-ccccccHHHHHHHH---------
Confidence 445566666666666666666666555554332 3344555555 333322222 21222222221111
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
+-+++++... .+..|...|..+.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-.
T Consensus 308 -m~~~~k~r~~-~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 308 -MLLLRKLRLK-KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred -HHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 1122222222 34457777777777888888888888888877654332 56677778888888888888888887655
Q ss_pred hCCCCCC-hhcHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCcchHHHHHHHHHhc-----------CCHHHHH
Q 037510 361 DWNLRPD-SFSFNTLVDGYC-RECDMTEAFRLCAEMLRQ--GI--EPSVVTYNTLLKGLCRV-----------GDVDEAL 423 (806)
Q Consensus 361 ~~~~~~~-~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~-----------~~~~~a~ 423 (806)
...-.|+ ...+...-..|. +-+..+++++...+.+.. +. ......|..+.-+|... ....+++
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 4321233 333332223333 245666666666665542 11 11233344444443321 1133455
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 424 HLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 503 (806)
+.+++..+.+.. |....-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-
T Consensus 465 qale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 566666554321 2233333444455666777777777777766545566667766666777777777777776655431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 037510 504 CLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL 583 (806)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 583 (806)
..|......-+..-...++.++++.....+.. .|... ......++-.........+.-.--
T Consensus 544 -~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~-----------------~we~~-~~~q~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 544 -GDNHVLMDGKIHIELTFNDREEALDTCIHKLA-----------------LWEAE-YGVQQTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred -hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH-----------------HHHhh-hhHhhhhhhhhhhhhhcccccCcc
Confidence 11111111112222234455555444333210 00000 000001111111111111110000
Q ss_pred CC-C-HhHHHHHHHHHHccC---ChHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 584 YP-N-IVTYGALISGWCDAG---MLNKAFKAYFDMIEKGF--SPN------VAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 584 ~p-~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
+| + ..++..+..-....+ ..+.. +..... .|+ ...|......+.+.+..++|...+.++.+
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 11 1 112222211111000 01111 111111 122 23455666778888999999988888876
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHH
Q 037510 651 FDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTL 729 (806)
Q Consensus 651 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 729 (806)
..+. ....|...+..+-..|...+|.+.|..... +.|+.+ +..++
T Consensus 679 ~~~l--------------------------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 679 IDPL--------------------------------SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred cchh--------------------------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 5422 455777788888899999999999999999 889986 89999
Q ss_pred HHHHHhcCCHHHHHH--HHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 730 IHGYAAVGDINEAFN--LRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 730 ~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+.+.|+..-|.. ++..+++ +.| ++..|..|+..+.+.|+.++|.+-|.-..+
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999998777777 9999999 556 888999999999999999999999998766
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-10 Score=108.99 Aligned_cols=270 Identities=11% Similarity=0.090 Sum_probs=207.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhc
Q 037510 486 MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKS 565 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 565 (806)
.|++.+|++.+.+..+.+ +.....|..-+.+--+.|+.+.+-.++.+. .+..-.++...+-+........
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~ea---------ae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEA---------AELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH---------hccCCCchHHHHHHHHHHHHhC
Confidence 588999998888877776 223455666677778888999998888877 4444456667777778888889
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCH
Q 037510 566 RELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV-------AICSKLVSTLCRLGKI 638 (806)
Q Consensus 566 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~ 638 (806)
|+++.|..-++++.+.+ +-++........+|.+.|++.....+...+.+.|.-.+. .+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999888888874 234566777788899999999999999999988765543 4677777766666666
Q ss_pred HHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 037510 639 DEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 718 (806)
+.-...++.....- +.++..-.+++.-+...|+.++|.++..+..+++
T Consensus 246 ~gL~~~W~~~pr~l--------------------------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 246 EGLKTWWKNQPRKL--------------------------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred hHHHHHHHhccHHh--------------------------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 66666777765431 1245566778888999999999999999999988
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 719 FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 719 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
..|...+ ...+.+-++.+.=++..++-.+. ...++-.+.+|+.-|.+.+.+.+|.++|+...+ ..|+..+|..
T Consensus 294 ~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~ 366 (400)
T COG3071 294 WDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAE 366 (400)
T ss_pred cChhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHH
Confidence 7777332 24456778888888888887773 233668889999999999999999999998887 7899999998
Q ss_pred HHHhhhc
Q 037510 799 LIDGYCK 805 (806)
Q Consensus 799 li~~~~~ 805 (806)
+-++|-+
T Consensus 367 la~~~~~ 373 (400)
T COG3071 367 LADALDQ 373 (400)
T ss_pred HHHHHHH
Confidence 8777643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-09 Score=98.68 Aligned_cols=458 Identities=12% Similarity=0.049 Sum_probs=214.4
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
+.-+...+++..|+.+++.-...+-+-...+-.-+..++.+.|++++|...|.-+... -.|+...+-.+..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4445566778888887776654433222223333455666777777777777766653 344555555555555566777
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
.+|..+-.... .+...-..|++.-.+.|+-++-..+.+.+.. ...--.+|.......-.+++|++++++.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655432 1222333444455566665555555544433 2233444555555555667777777776
Q ss_pred HhcCCCCCChHhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 289 KEEDDVIVDEYAYGVLI-DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
... .|+-...+..+ -+|.+..-++-+.++++-..+. ++.+....|.......+.=.-..|..-.+++.+.+-.
T Consensus 178 L~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-- 251 (557)
T KOG3785|consen 178 LQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-- 251 (557)
T ss_pred Hhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--
Confidence 654 22333333322 2345556666666666655554 2223334443333333322222222222332222100
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDI 447 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (806)
. -..+.-+++++- .-..+-+.|++++-.+.+. . +.+-..|+-.
T Consensus 252 --~-~~f~~~l~rHNL------------------------------VvFrngEgALqVLP~L~~~--I--PEARlNL~iY 294 (557)
T KOG3785|consen 252 --E-YPFIEYLCRHNL------------------------------VVFRNGEGALQVLPSLMKH--I--PEARLNLIIY 294 (557)
T ss_pred --c-chhHHHHHHcCe------------------------------EEEeCCccHHHhchHHHhh--C--hHhhhhheee
Confidence 0 111222222210 0011223333333333322 1 1122233334
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 037510 448 LFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK-----GLCKMGKMTEAQKIFDKMKELGCLPNI-ITYRTLSDGYCKV 521 (806)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 521 (806)
|.++++..+|..+..++... .|-......++. -........-|.+.|...-+.+..-|. .--.++...+.-.
T Consensus 295 yL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 44555555555544443211 111111111111 111112234455555444333332222 2233344445555
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHcc
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY-GALISGWCDA 600 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~ 600 (806)
.++++.+.+++.+ ...-...|...+ .+..+.+..|.+.+|+++|-......++ |..+| ..|..+|.+.
T Consensus 373 ~qFddVl~YlnSi---------~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 373 FQFDDVLTYLNSI---------ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHH---------HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 5666666666655 222222222222 3566666677777777777655543333 33334 3344566677
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVA-ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
+..+.|++++-++ +.+.+.. ....+.+-|.+.+.+--|-+.|+.+...++.|+
T Consensus 442 kkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 442 KKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred CCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 7777766554333 2222332 233344556677777777777777766665553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-10 Score=106.61 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=161.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHhH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM---NLLICNSLINGYCKLGQVCE 351 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 351 (806)
.++.++|.++|-+|.+. .+....+..+|.+.|-+.|.++.|+++.+.+.++.--+ .......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45667777777777664 22233445566667777777777777777766542111 12244556677778888888
Q ss_pred HHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCCHHHHHHHHH
Q 037510 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV----VTYNTLLKGLCRVGDVDEALHLWL 427 (806)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~ 427 (806)
|+.+|..+.+.+ ..-......|+..|-+..+|++|++.-+++.+.|..+.. ..|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888777644 333456677788888888888888888887776544332 234455555556677888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 428 MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
+..... +..+..-..+.+.+...|+++.|++.|+.+.+.+..--..+...|..+|.+.|+.++...++..+.+.. +.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 877753 224445556777788888888888888888877544445566777788888888888888888877753 33
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
...-..+.+......-.+.|..++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHH
Confidence 333333444333333344444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=107.15 Aligned_cols=286 Identities=15% Similarity=0.134 Sum_probs=146.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCh
Q 037510 451 KGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN------IITYRTLSDGYCKVGNL 524 (806)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 524 (806)
..+.++|.+.|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++-..+.+. || ......+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666666542 223333445566666666666666666666553 33 12334455556666666
Q ss_pred HHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHcc
Q 037510 525 EEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV----TYGALISGWCDA 600 (806)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~ 600 (806)
|.|..+|..+ .+.+ .--......|+..|-+..+|++|+++-.++.+.+-++..+ .|.-+...+...
T Consensus 124 DRAE~~f~~L---------~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 124 DRAEDIFNQL---------VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred hHHHHHHHHH---------hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 6666666655 1111 1123344556666666666666666666666654443322 233344444455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
.+++.|...+.++.+.+ +.....-..+.+.....|+++.|.+.++.+.+.++.-
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y------------------------- 247 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY------------------------- 247 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-------------------------
Confidence 56666666666666542 2233333444555566666666666666666554221
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
-+.+...|..+|.+.|+.++....+..+.+. .+....-..+...-....-.+.|..++.+-+. -+|+...
T Consensus 248 ------l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~g 317 (389)
T COG2956 248 ------LSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRG 317 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHH
Confidence 1235555666666666666666666666663 23332222232222222223444444444333 2466665
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 037510 761 YNSLVSGLC---NSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 761 ~~~l~~~~~---~~g~~~~A~~~~~~m~~ 786 (806)
+..|+..-. ..|+..+-+..+++|+.
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 555554332 22444555555555553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-09 Score=104.22 Aligned_cols=457 Identities=14% Similarity=0.103 Sum_probs=223.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
.+++...+++.+.+.+.. +....|.....-.++..|+-++|........+..+. +.+.|..+.-.+....++++|+.
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 344444444444444431 112222332223334445555555554444443222 33444444444444455555555
Q ss_pred HHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 037510 355 VLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRC- 433 (806)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 433 (806)
.|+.....+ +.|...|.-+.-.-.+.++++.....-.+..+.. +.....|..+..+..-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555554443 3344444444444444455554444444444431 1122344455555555555555555555554432
Q ss_pred CCCChhhHHHH------HHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 434 VCPNEVGYCTL------LDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 434 ~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
..|+...+... .....+.|..+.|.+.+...... +......-..-...+.+.+++++|..++..+...+ ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 12333333221 12333455566666555544332 11111122334455667777888888888777764 55
Q ss_pred HHHHHHHH-HHHHhcCChHHHH-HHHHHHHhcccChhhhhcCCCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHCCCC
Q 037510 508 IITYRTLS-DGYCKVGNLEEAF-KIKNLMERREILPSMEKEAIVPSIDMYNYL-ISVAFKSRELTSLVDLLAEMQTMGLY 584 (806)
Q Consensus 508 ~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~ 584 (806)
..-|.... .++.+..+.-++. .+|..... ..|....-..+ +.......-.+..-+++..+.++|++
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~-----------~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSE-----------KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-----------cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 54444433 3333333333333 44444311 01110000000 01111111223344555666667765
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIE----KG----------FSPNVA--ICSKLVSTLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 585 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 648 (806)
+-... +...|-.....+--.++...+.. .| -+|... ++..++..+.+.|+++.|..+++.+
T Consensus 321 ~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 SVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred chhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 53332 22222221111100111111110 00 134433 4445677788899999999999998
Q ss_pred hhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHH
Q 037510 649 VDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYST 728 (806)
Q Consensus 649 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 728 (806)
++.-++ -+..|..-...+...|++++|...+++..+.+ .||...=.-
T Consensus 398 IdHTPT--------------------------------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 398 IDHTPT--------------------------------LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred hccCch--------------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 876422 23355556678889999999999999998843 234332224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--Chh----cHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 729 LIHGYAAVGDINEAFNLRDEMLKINLVP--NIA----TYNS--LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~----~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
-+.-..+.++.++|.++.....+.|... +.. .|.. =+.+|.++|++.+|++=|..+.+
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 4445567789999999998888765311 111 1111 13568899999888887766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-07 Score=95.74 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=112.1
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
.+..|+.+..+-.+.|.+.+|++-|-++ .|+..|..+++...+.|.+++-.+++..+.++.-.|.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--------- 1167 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--------- 1167 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---------
Confidence 3456888888877888888887766432 3677888888888888999888888887777655442
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 745 (806)
+=+.|+-+|++.+++.+-.+++ ..|+..-...+++-|...|.++.|.-+
T Consensus 1168 ------------------------id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1168 ------------------------IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred ------------------------chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 3355778888888887766555 458887778888888888888877766
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 746 RDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 746 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
|... ..|..|...+...|.+..|....++. .+..||+.+--+|
T Consensus 1217 y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1217 YSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred HHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 6553 34556667777777777777655543 3455676665555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-08 Score=100.95 Aligned_cols=424 Identities=16% Similarity=0.135 Sum_probs=273.9
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 037510 345 KLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424 (806)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 424 (806)
..+++...+...+.+.+. .+....+.....-.++..|+.++|.+..+.....++. +.++|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 456666666666666552 2333344444444556678888888888887776544 67788888777777888999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 037510 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG- 503 (806)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 503 (806)
.|+..+..+ +.|...+.-+.-.-.+.++++..........+.. +.....|..++.+..-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999888863 3467777777777778888888888888887752 3455678888888888999999999999887654
Q ss_pred CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 037510 504 CLPNIITYRTLS------DGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAE 577 (806)
Q Consensus 504 ~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 577 (806)
-.|+...+.... ....+.|..++|.+.+...+ ..+......-..-...+.+.+++++|..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e----------~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE----------KQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh----------hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 245655544332 34457788888888776542 11122222233455678899999999999999
Q ss_pred HHHCCCCCCHhHHHHHH-HHHHccCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 578 MQTMGLYPNIVTYGALI-SGWCDAGMLNKAF-KAYFDMIEKGFSPNVAICSKL-VSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 578 ~~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
+... .||..-|.... .++.+-.+..++. .+|...-+. .|.......+ +.......-.+..-+++...++.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9987 57776665544 4443333334444 556555543 2222111111 11111222334445566666676654
Q ss_pred CChhhhhhh--hhh--hhHHHHHhhhHHh-----------hhcCCCCChHHHH--HHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 655 PDLKYMASS--AIN--VDAQKIAMSLDES-----------ARSLCVPNYVVYN--IVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 655 p~~~~~~~~--~~~--~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+-.....+- +.. .-..+....+... ....-+|....|. .++..+-+.|+++.|...++.++.
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId- 399 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID- 399 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-
Confidence 321111100 000 0000111111110 1111256665554 467788899999999999999998
Q ss_pred CCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 718 GFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 718 g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
..|+.+ -|..-+..+...|++++|...++++.+.. .||...-..-+.-..++.+.++|.++.....+.|.
T Consensus 400 -HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 -HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred -cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 679886 77788899999999999999999999854 45655544555666789999999999999888765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-08 Score=101.23 Aligned_cols=470 Identities=15% Similarity=0.115 Sum_probs=226.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 234 IDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
++.+...|++++|.+...++...+ +.+..++..-+-++.+.+++++|+.+.+.-... ..+...+.--..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHccc
Confidence 455666777777777777777655 245556666666667777777777554432211 1111111111223335677
Q ss_pred hHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEM-NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
.++|+..++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+. + .+...+++-+-.- ..+... .
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-d---d~d~~~r~nl~a~--~a~l~~-~ 162 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-D---DQDEERRANLLAV--AAALQV-Q 162 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHH--HHhhhH-H
Confidence 777777666 2222 222444445556667777777777777665431 1 1222221111000 000000 0
Q ss_pred HHHHCCCCCCcchHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037510 393 EMLRQGIEPSVVTYNTLL---KGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGF 469 (806)
Q Consensus 393 ~m~~~g~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (806)
.+......| ..+|..+. ..+...|++.+|+++++...+.+-.. + ..++.. .+ ++
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l-~~~d~~--eE--------ei 219 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------L-EDEDTN--EE--------EI 219 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------h-cccccc--hh--------hH
Confidence 111111122 22333333 23445666666666666653321000 0 000000 00 00
Q ss_pred CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCh-H-HHHHHHHHHHhcc--cC
Q 037510 470 YKNT-ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITY----RTLSDGYCKVGNL-E-EAFKIKNLMERRE--IL 540 (806)
Q Consensus 470 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~-~-~A~~~~~~~~~~~--~~ 540 (806)
.... .+--.+...+-..|+.++|..++...++.. ++|.... |.++.. ....++ + .++..++...... +.
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHH
Confidence 0000 011223445556677777777777766655 3343221 122111 111111 1 1111111110000 00
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH--HccCChHHHHHHHHHHHHcCC
Q 037510 541 PSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGW--CDAGMLNKAFKAYFDMIEKGF 618 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~ 618 (806)
..+........+..-+.++..| .+..+.+.++..... +..|... +..++..+ ++.....+|.+++....+...
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp--~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP--GMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC--ccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 0000000000111112222222 222333333322222 1233332 33343332 233357788888888776532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQ--------KMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVV 690 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (806)
.-...+....+......|+++.|.+++. .+.+.+..| .+
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P---------------------------------~~ 419 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP---------------------------------GT 419 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh---------------------------------hH
Confidence 2234556666777889999999999999 333333332 34
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLT--GFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
-..+...+.+.++.+.|..++.+.+.. .-.+.. .++.-++..-.+.|+-++|..+++++++.+ .+|..+...+
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~l 498 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 555677778888877787777776642 111222 244455555567799999999999999853 4578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m 784 (806)
+.+|++. +.+.|..+-.++
T Consensus 499 V~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhc-CHHHHHHHhhcC
Confidence 8888876 678887776664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-10 Score=110.68 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=169.5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345677788999999999999999999998763 3346677888889999999999999999999864 44667888889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+...|++++|...++++......+ .....+..++.++...|++++|..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999998753221 234567778899999999999999
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 710 IFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 710 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+++..+ ..|+. ..+..++..+...|++++|...++++.+. ...++..+..++..+...|+.++|..+.+.+..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999998 56664 58889999999999999999999999985 234667777888899999999999999988875
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-06 Score=90.98 Aligned_cols=555 Identities=17% Similarity=0.156 Sum_probs=304.1
Q ss_pred CHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCH-HHHHHHHHHHHHcCChhhHHHHH
Q 037510 67 NIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSP-TVFDMILKIYAQKGMLKNALHVF 145 (806)
Q Consensus 67 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 145 (806)
+-..|..|++.+.+.++++-|.-.+..|-.... -..++++ .-++ +.-..+.-.-...|++++|..+|
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg--------aRAlR~a----~q~~~e~eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG--------ARALRRA----QQNGEEDEAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh--------HHHHHHH----HhCCcchhhHHHHHHHHHhhHHHHHHHH
Confidence 446789999999999999999888887743210 1122222 1122 22222233335679999999999
Q ss_pred HHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc
Q 037510 146 DNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFEL 225 (806)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 225 (806)
++-... ..|=..|-..|.+++|.++-+.--+ +. =..||..-..-+-..++.+.|+++|++....
T Consensus 824 r~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~h---- 887 (1416)
T KOG3617|consen 824 RQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVH---- 887 (1416)
T ss_pred HHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----
Confidence 987763 3344556778999999988764322 22 1346666677777788899999998864321
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 037510 226 NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLI 305 (806)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 305 (806)
--.++..|. .+....+...+++ .|...|.-....+-..|+++.|+.+|...++ |..++
T Consensus 888 afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~V 945 (1416)
T KOG3617|consen 888 AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMV 945 (1416)
T ss_pred HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhhe
Confidence 111111111 1222222233332 2445566666666778899999988887653 55677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcC---
Q 037510 306 DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCREC--- 382 (806)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 382 (806)
...|-.|+.++|-++-++- | |......|.+.|-..|++.+|...|.+... +...|+.|-.++
T Consensus 946 rI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred eeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 7788888888888876643 2 667777888888888999888888866532 333333222221
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH--------HHHc--CCCCChhh
Q 037510 383 ------------DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLM--------MLKR--CVCPNEVG 440 (806)
Q Consensus 383 ------------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~ 440 (806)
+.-.|...|++. |.. ....+..|-+.|.+.+|+++--+ ++.. ....|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 122223333322 111 22233455566666666544221 1111 22345666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCH----HHHHHHH
Q 037510 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE-LGCLPNI----ITYRTLS 515 (806)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~----~~~~~l~ 515 (806)
.+...+.++...+++.|..++-...+ |...+ .+|+..++.-..++-+.|.- ++-.|+. .....+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHH-HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 77777777777788887777655543 22222 23444444444444444421 1112333 3466677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHH---------H----HHHHHHCC
Q 037510 516 DGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVD---------L----LAEMQTMG 582 (806)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---------~----~~~~~~~g 582 (806)
..|.++|.+..|.+-|...- + --..++++.+.|+.++..- + -+-++...
T Consensus 1153 e~c~qQG~Yh~AtKKfTQAG---------d---------Kl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlD 1214 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQAG---------D---------KLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLD 1214 (1416)
T ss_pred HHHHhccchHHHHHHHhhhh---------h---------HHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcc
Confidence 88889999988887776541 0 0123445556665443210 0 01122233
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 583 LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 583 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
.+.++.+...++..|.+..-++.--..|.....- ....|..+-. ..|-.++|.+.+.++.++.....
T Consensus 1215 Wq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t------ 1281 (1416)
T KOG3617|consen 1215 WQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTT------ 1281 (1416)
T ss_pred cccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHH------
Confidence 4455556555555554433333322222222111 1111111111 13455666666666665432110
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH-hcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcC
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC-KSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVG 737 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g 737 (806)
....+++ +..-+-..+.... -..+..+.+.-.+.|++....||.+ .|..|+..|....
T Consensus 1282 ---------~l~~Lq~--------~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k 1344 (1416)
T KOG3617|consen 1282 ---------GLDALQE--------DLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRK 1344 (1416)
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhh
Confidence 0011110 1111111222211 1125666666777777765555543 6788899999999
Q ss_pred CHHHHHHHHHHHHHc
Q 037510 738 DINEAFNLRDEMLKI 752 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~ 752 (806)
+|..|.+.+++|..+
T Consensus 1345 ~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1345 NYKPAYRALTELQKK 1359 (1416)
T ss_pred hccHHHHHHHHHhhc
Confidence 999999999999874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.7e-11 Score=108.03 Aligned_cols=235 Identities=15% Similarity=0.088 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 588 (806)
..-..+..+|.+.|-+.+|.+.++.. ....|-+.+|..|...|.+..++..|+.++.+-.+. .|-.+
T Consensus 224 wWk~Q~gkCylrLgm~r~Aekqlqss-----------L~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~V 290 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSS-----------LTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDV 290 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHH-----------hhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchh
Confidence 33456677777777777777777643 334456667777777777777788888777777665 44444
Q ss_pred HH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 589 TY-GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 589 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
|| ..+...+...++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+++++++.|..
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~------------- 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ------------- 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------------
Confidence 44 445566777788888888888877752 445666666677777778888888888888887754
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~ 745 (806)
++..|+.++-+|.-.+.++-++.-|++.+..--.|+.. .|..+.......||+.-|.+.
T Consensus 357 -------------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 357 -------------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred -------------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 56677778777778888888888888877754456553 677888777888888888888
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 746 RDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 746 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
|+-++..+ ..+...++.|...-.+.|++++|..+++.... +.|+
T Consensus 418 frlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 418 FRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 88777642 22556778887777788888888888887766 4554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=112.67 Aligned_cols=218 Identities=23% Similarity=0.216 Sum_probs=148.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCC-CC-HH
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTM-----G-LYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIE-----KGFS-PN-VA 623 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~ 623 (806)
+...|...+++++|..+|+++... | ..| -..+++.|..+|.+.|++++|...++++++ .|.. |+ ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555555555555555554431 1 112 234667777788888888888877777664 1211 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
.++.++..++..+++++|..++++..+.- +.++. +.-.-+++.|...|.+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~---------------------------~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN---------------------------VNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc---------------------------hHHHHHHHHHHHHHHH
Confidence 45667777888999999999999776531 11110 0123478999999999
Q ss_pred cCChhhHHHHHHHHHHC-----C-CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----hhcHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLT-----G-FSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLVPN----IATYNSLVSG 767 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~ 767 (806)
.|++++|.+++++++.. | ..+. ...++.|+..|.+.+++.+|.++|.+...- -+.|+ ..+|..|+..
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 99999999999998864 1 1233 247889999999999999999999987651 12332 3588999999
Q ss_pred HHhcCCHHHHHHHHHHHHH------CCCCCCHhhHHHHHHh
Q 037510 768 LCNSGELDRAKRLFCKLRQ------KGLTPTVVTYNILIDG 802 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~------~g~~p~~~~~~~li~~ 802 (806)
|.+.|++|.|.++.+.+.. .+..|+.........-
T Consensus 460 Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 9999999999999888752 2455666665555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-07 Score=97.68 Aligned_cols=643 Identities=14% Similarity=0.041 Sum_probs=344.3
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037510 108 WDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
+..++++.+-...-..+|..|...|+...+...|.+-|++..+.+.. +..++-.....|.+..+++.|..+.-..-+..
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 34556665555556678999999999888999999999999887653 77788999999999999999998843332211
Q ss_pred CC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037510 188 IV-PDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYT 266 (806)
Q Consensus 188 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (806)
.. .-..-|....-.+.+.++...|..-|+...+.. +.|...|..|+.+|.++|.+..|.++|.+..... |+ ..|.
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~ 632 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYG 632 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHH
Confidence 00 011122234444667888999999999988875 4588899999999999999999999999888753 22 2222
Q ss_pred H--HHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCChHhHHHHHHHHHhcCChHH-------HHHHHHHHHHCCCCCC
Q 037510 267 T--LTKGYCKQHKMEEAENMLRRMKEED-----DVIVDEYAYGVLIDGYCKVGKVDE-------AIRVLNEMLKTGLEMN 332 (806)
Q Consensus 267 ~--li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~-------a~~~~~~~~~~~~~~~ 332 (806)
. .....|..|.+.+|+..+....... +..--..++-.+...+...|-..+ +++.|.-........+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2 2334567788999988887765431 111112222222222222332233 3333332222221112
Q ss_pred hhHHHHHHHHHH-----------------------hcCCH---h---HHHHHHHHHhhCCCCCChhcHHHHHHHHHh---
Q 037510 333 LLICNSLINGYC-----------------------KLGQV---C---EAKRVLRCMGDWNLRPDSFSFNTLVDGYCR--- 380 (806)
Q Consensus 333 ~~~~~~li~~~~-----------------------~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 380 (806)
...|-.+.+++. +.+.. + -+.+.+-.-.+ +..+..+|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHH
Confidence 222222222111 11111 0 01111100000 11223445445444433
Q ss_pred ---c--CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 037510 381 ---E--CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFY 455 (806)
Q Consensus 381 ---~--g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (806)
. .+...|+..+.+.++.. .-+..+|+.|.-. ...|++.-+...|-+.... .+.+..+|..+.-.+.+..+++
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHH
Confidence 1 12235666666666542 1244555555443 6667777777777665554 2336667888888888899999
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE----LGCLPNIITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
.|...|....... +.+...|-.........|+.-++..+|..--+ .|--++..-|..........|+.++-+...
T Consensus 868 ~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 868 HAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 9999998888764 44666676666666677888888888876322 232344444544555556677766655555
Q ss_pred HHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHhHHHHH----HHHHHccCChHHH
Q 037510 532 NLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM-GLYPNIVTYGAL----ISGWCDAGMLNKA 606 (806)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l----~~~~~~~g~~~~A 606 (806)
+.+....+.-.---.+.+.+...|...+...-..+.+.+|.++..++... ...-+...|+.. ...++..|.++.|
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A 1026 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESA 1026 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhH
Confidence 54432222111122334445666766666666677777776666654321 012233444432 2234455666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCC
Q 037510 607 FKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVP 686 (806)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (806)
...+...-. ..+..+...-+ +..-.++++++.+.|+++....-. ..
T Consensus 1027 ~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~s------------------------------e~ 1072 (1238)
T KOG1127|consen 1027 KKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNS------------------------------ES 1072 (1238)
T ss_pred hhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhccc------------------------------cc
Confidence 443321110 00111111101 113357788888888887753211 01
Q ss_pred C-hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCChhcH
Q 037510 687 N-YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK---IN-LVPNIATY 761 (806)
Q Consensus 687 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~p~~~~~ 761 (806)
+ .+....++.+....+..+.|...+-+.... ..|+..+.-.|...+.--.+-.....+.++..+ .. +.-++...
T Consensus 1073 d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1073 DKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL 1151 (1238)
T ss_pred chhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH
Confidence 2 233444555556667777777776666652 234443333333333222222222222222222 10 00011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 762 NSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.-..|.+.|+-.-..+.+.+..-. ...|...|..|
T Consensus 1152 --~e~i~~~~~r~~~vk~~~qr~~h~-~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1152 --KELIYALQGRSVAVKKQIQRAVHS-NPGDPALWSLL 1186 (1238)
T ss_pred --HHHHHHHhhhhHHHHHHHHHHHhc-CCCChHHHHHH
Confidence 112355667766666666665541 22334455444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-08 Score=100.56 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=169.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKL--- 346 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 346 (806)
..+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+++.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 3445556666666666554332 2222333444455556666666666666666665432 444444444444211
Q ss_pred --CCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 037510 347 --GQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDM-TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL 423 (806)
Q Consensus 347 --g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 423 (806)
.+.+....+++++...- |.......+.-.+.....+ ..+...+..++.+|++ .+++.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 23455566666655432 3322222222222221222 2344555556666654 23444444444444444444
Q ss_pred HHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 037510 424 HLWLMMLKR----C----------VCPNE--VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMG 487 (806)
Q Consensus 424 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 487 (806)
.++...... + -+|.. .++..+...|...|++++|++++++.++.. +..+..|..-.+.+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 444444321 1 12333 244666778888999999999999888873 334667777888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC--CHH------HHHHHH
Q 037510 488 KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP--SID------MYNYLI 559 (806)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~l~ 559 (806)
++.+|.+.++...+.. ..|...-+-.+..+.+.|+.++|.+++....+ .+..| +.. .....+
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr---------~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR---------EDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC---------CCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999988876 44666667777888899999999998887733 22222 211 113456
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 037510 560 SVAFKSRELTSLVDLLAEMQT 580 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~~~~ 580 (806)
.+|.+.|++..|++.|....+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 788899999888887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-06 Score=89.01 Aligned_cols=602 Identities=14% Similarity=0.114 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhc---------CCCcChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKY---------GCIPSLRSC-NCLLSNLVKNGEGYVALLVYEQMMRVGIVPD 191 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 191 (806)
.+.|+.-...|-+-.+++.|++.|.+--.. .++..++.. ..-...+...|+++.|+.-|-+...
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------ 734 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------
Confidence 345666666666667777777776642211 121122221 2234455666777777766654321
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037510 192 VFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKG 271 (806)
Q Consensus 192 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 271 (806)
.-..+.+-.....+.+|+.+++.+..... -..-|..+.+-|...|+++.|.++|-+.- .++--|..
T Consensus 735 ---~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~m 800 (1636)
T KOG3616|consen 735 ---LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDM 800 (1636)
T ss_pred ---HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHH
Confidence 12345556677888888888888876532 23456677788889999999998886432 35566888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhH
Q 037510 272 YCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCE 351 (806)
Q Consensus 272 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 351 (806)
|.+.|+++.|.++-++.. |.......|-+-..-+-+.|++.+|.++|-... .|+ .-|.+|-+.|..+.
T Consensus 801 y~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchH
Confidence 899999999888876653 222334455555666677888888887764332 222 34677788888888
Q ss_pred HHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH---
Q 037510 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLM--- 428 (806)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--- 428 (806)
.+++.++-.-. .-..|.-.+..-+-..|++..|.+.|-+.-+ |...++.|...+-|++|.++-+.
T Consensus 869 mirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg 936 (1636)
T KOG3616|consen 869 MIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGG 936 (1636)
T ss_pred HHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhcccc
Confidence 77777654211 1123444556666667777777766644322 34445555555555555444321
Q ss_pred ---------HHHcCCCCCh--------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 037510 429 ---------MLKRCVCPNE--------VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTE 491 (806)
Q Consensus 429 ---------~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 491 (806)
|..+.+-.+. .....-++..+..+.++-|.++-+-..+.. ...+.-.+...+-..|++++
T Consensus 937 ~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~ed 1013 (1636)
T KOG3616|consen 937 ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFED 1013 (1636)
T ss_pred ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhh
Confidence 0000000000 011112233334445555555544444331 12223345556677899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-------------------HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-
Q 037510 492 AQKIFDKMKELGCLPNIITYRT-------------------LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS- 551 (806)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~- 551 (806)
|-+.+-+.++.+ .-..||.. .+.++.+.++|..|.++-+. ..|+
T Consensus 1014 askhyveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~--------------h~~~~ 1077 (1636)
T KOG3616|consen 1014 ASKHYVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA--------------HCEDL 1077 (1636)
T ss_pred hhHhhHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh--------------hChhh
Confidence 988888777654 11122221 12233444444444443221 1222
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH----------------HH
Q 037510 552 -IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFD----------------MI 614 (806)
Q Consensus 552 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~ 614 (806)
..++..-.+.....|++..|..++-+.. .|+.. +.-|...+.|..|+++-+. ..
T Consensus 1078 l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~ 1148 (1636)
T KOG3616|consen 1078 LADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEAL 1148 (1636)
T ss_pred hHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHH
Confidence 2344444555556677777766654333 34322 2233445555555544332 22
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hh-hhhhhhh-------hHHHHHhhhHHhhhcC
Q 037510 615 EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK---YM-ASSAINV-------DAQKIAMSLDESARSL 683 (806)
Q Consensus 615 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~-~~~~~~~-------~~~~~~~~~~~~~~~~ 683 (806)
++| ......+-.-..-+-..|++.+|...+-++-+-....+.. |. ...+..+ .++-+..........+
T Consensus 1149 k~g-argvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~ 1227 (1636)
T KOG3616|consen 1149 KKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAG 1227 (1636)
T ss_pred hcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhccc
Confidence 222 1233344444555677888888887776653221111100 11 1111111 1111122222222222
Q ss_pred CCCCh-HH------HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hH------------------HHHHHHHHhcC
Q 037510 684 CVPNY-VV------YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TY------------------STLIHGYAAVG 737 (806)
Q Consensus 684 ~~~~~-~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~------------------~~l~~~~~~~g 737 (806)
+..-. .. -.-.|+++|+...+.+|.++-++..-. +.|... .| .+-++.+..++
T Consensus 1228 ~~e~aael~l~f~~~keaida~~~~eewakakqvake~~p~-~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~ 1306 (1636)
T KOG3616|consen 1228 CHEAAAELLLLFDLSKEAIDAFCEAEEWAKAKQVAKELDPE-MEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIEND 1306 (1636)
T ss_pred ccHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcc
Confidence 11110 11 112456777777777777776654321 223221 22 23455677788
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 738 DINEAFNLRDEMLKINLVPNIATYNSLV-SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+|++|++. +.+.+.+|-..-|.++. ..+.+.|+...|+.++++--...-..+...|+.+.
T Consensus 1307 qwdk~idt---ak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ 1367 (1636)
T KOG3616|consen 1307 QWDKAIDT---AKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIF 1367 (1636)
T ss_pred cHHHHHHH---HHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHH
Confidence 88887765 34456777666665554 35678899999998887643222223344444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-09 Score=116.38 Aligned_cols=217 Identities=13% Similarity=0.006 Sum_probs=137.0
Q ss_pred CChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 037510 136 GMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFV 215 (806)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 215 (806)
+++++|...+++..+.++. +..++..+...+...|++++|+..|++.++.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578888888888887643 67777788888888888888888888888754 224556777777888888888888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037510 216 KEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVI 295 (806)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 295 (806)
++..+.... +...+..++..+...|++++|...+++......+.++..+..+..++...|+.++|...++++... .+
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 888776432 223333444456667888888888887766543234555667777777888888888888776543 22
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037510 296 VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL-EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (806)
.+....+.+...++..| ++|...++.+.+..- .+..... +-..|.-.|+-+.+..+ +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 23334444555556666 366666666554311 1111111 23334444555555554 555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-10 Score=103.14 Aligned_cols=231 Identities=16% Similarity=0.069 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCK 204 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 204 (806)
-..+.++|.+.|++.+|.+.|+...+. .|-+.+|-.|-.+|.+-.++..|+.+|.+-++. ++-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356778888888888888888877764 366777777888888888888888888877663 23344444456667777
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037510 205 EKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENM 284 (806)
Q Consensus 205 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 284 (806)
.++.++|.++++...+.. +.++.....+...|.-.++.+.|...+.++.+.|+ -++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 788888888888877653 34555666666667777778888888888887776 4677777777777777777777777
Q ss_pred HHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037510 285 LRRMKEEDDVIVD--EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 285 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (806)
|.+.... --.|+ ...|..+.......|++..|.+.|+-.+..+.. ....+|.|.-.-.+.|++++|..+++...+.
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7776654 22233 235666666666777777777777777665433 4566777776667777777777777766543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-12 Score=86.03 Aligned_cols=50 Identities=46% Similarity=1.049 Sum_probs=42.8
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 756 PNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 756 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 77888888888888888888888888888888888888888888888876
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-08 Score=96.54 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHH--------HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFS--------ALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLVPN 757 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~ 757 (806)
..+.-.++......|+++.|++++. .+.+.+..|-.+ ..+...+.+.++.+.|..++.+++.. .-.+.
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 4566677888899999999999999 666655556555 44667788888888888888888762 11222
Q ss_pred hhcHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 758 IATYNSLV----SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 758 ~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
......++ ..-.+.|+-++|..+++++.+. ..+|..+...+|.+|++
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 22223333 3334779999999999999873 35678888899998875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-09 Score=109.94 Aligned_cols=251 Identities=18% Similarity=0.178 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-C
Q 037510 439 VGYCTLLDILFNKGDFYGAVKLWNNILAR-----G-FYKNTI-TFNTMIKGLCKMGKMTEAQKIFDKMKEL-----GC-L 505 (806)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~ 505 (806)
.+...+...|...|+++.|+.+++..+.. | ..|... ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666666666666666666655543 1 012222 2234556667777777777777766432 21 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 037510 506 P-NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY 584 (806)
Q Consensus 506 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 584 (806)
| -..+++.|...|.+.|++++|...++.. .+++...... ..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~A-------------------------------------l~I~~~~~~~-~~ 321 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERA-------------------------------------LEIYEKLLGA-SH 321 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHH-------------------------------------HHHHHHhhcc-Ch
Confidence 1 1245556666677777777776665543 2333331111 12
Q ss_pred CCHh-HHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 585 PNIV-TYGALISGWCDAGMLNKAFKAYFDMIEK---GFSPN----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 585 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
|... .++.++..|+..+++++|..++++..+. -+.++ ..+++.+...|...|++++|.+++++++...-...
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 2222 3556667788889999998888877652 12222 46888999999999999999999999886421000
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----C-CCCCH-HhHHHHH
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----G-FSPDN-FTYSTLI 730 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~-~~~~~l~ 730 (806)
.....-....++.|...|.+.+++++|.++|.+...- | -.|+. .+|..|+
T Consensus 402 ------------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 402 ------------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred ------------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 0000112346788899999999999999999886532 2 22444 4899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 731 HGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|.+.|+++.|+++.+.+..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999998874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-09 Score=115.04 Aligned_cols=267 Identities=15% Similarity=0.043 Sum_probs=188.7
Q ss_pred cChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 037510 155 PSLRSCNCLLSNLVK-----NGEGYVALLVYEQMMRVGIVPD-VFTCSIVVNAYC---------KEKSMEKALDFVKEME 219 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~ 219 (806)
.+..+|...+.+... .+..++|+..|++..+.. |+ ...|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 577777666665422 234678999999998853 44 445555554443 2345889999999999
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChH
Q 037510 220 NLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEY 299 (806)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 299 (806)
+.+ +.+...+..+...+...|++++|...|++..+.++ .+...|..+...+...|++++|+..+++..+.++. +..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--Chh
Confidence 875 44778888888899999999999999999998764 35678888999999999999999999999886332 222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHH
Q 037510 300 AYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYC 379 (806)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 379 (806)
.+..++..+...|++++|...++++.+...+-++..+..+...+...|+.++|...++++.... +.+....+.+...++
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3334444566789999999999998876433356667788888999999999999999876542 233444555666677
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 380 RECDMTEAFRLCAEMLRQG-IEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRC 433 (806)
Q Consensus 380 ~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 433 (806)
..| ++|...++.+.+.. ..+....+ +-..+.-.|+-+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777766531 12222222 33444556666666555 7776653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-09 Score=104.26 Aligned_cols=197 Identities=18% Similarity=0.060 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455556666666666666666666665532 1234445555555555666666666665555543 2234445555555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGI-SRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD 315 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 315 (806)
+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 5555555555555555544211 112233444444445555555555555544443 1122333444444444444444
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHH
Q 037510 316 EAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRC 358 (806)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (806)
+|...+++..+. .+.+...+..++..+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444443 122333333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-06 Score=91.53 Aligned_cols=249 Identities=16% Similarity=0.090 Sum_probs=146.8
Q ss_pred HHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCCHhHHHHHHHH
Q 037510 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG---------IVPDVFTCSIVVNA 201 (806)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---------~~~~~~~~~~l~~~ 201 (806)
.|..-|+.|.|.+-.+.+. +...|..|.+.+.+..+.+-|.-.+.-|.... -.|+ .+-..+...
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3566799999988777654 56789999999999999888887776664321 1122 222223333
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
-...|.+++|..++.+..+. ..|=..|...|.+++|.++-+.-..-.+ -.||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 45778999999999998764 3445667888999999998875433222 34666666667778889999
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
++.|++.... --..+..| . .++....+..+.+ .|...|.--..-+-..|+++.|+.+|....+
T Consensus 878 leyyEK~~~h-----afev~rmL-~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 878 LEYYEKAGVH-----AFEVFRML-K-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhcCCh-----HHHHHHHH-H-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 9988764211 11111111 0 0111111111111 1333333334444455666666666655442
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
|-.+++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445555566666666666655432 133444455666666666666666665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-07 Score=89.15 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
-+.+...+...|+.+.++.++++.+. ..||....+.|++.+...+.+.+|.+.|..++.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444455555555555555555555 455555555555555555555555555555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-07 Score=97.18 Aligned_cols=265 Identities=14% Similarity=0.136 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT-CSIVVNA 201 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~ 201 (806)
+..--....+...|++++|++.++.-.+.- .............+.+.|+.++|..+|..+++.+ |+... |..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 344445566677888888888887655432 2234455666777888888888888888888765 44444 4444444
Q ss_pred HHhc-----CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 202 YCKE-----KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDL-NGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 202 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
+... .+.+...++++++...- |.......+.-.+..-.++ ..+...+..+..+|++ .+|+.|-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 4222 24566667777666542 3322222222112221122 2344445555555652 3455555555544
Q ss_pred CCHHHHHHHHHHHHhcC-------------CCCCChH--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 037510 276 HKMEEAENMLRRMKEED-------------DVIVDEY--AYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLI 340 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 340 (806)
.+.+-..+++....... .-+|... ++..+...|...|++++|++.+++.+...+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 44444444444443220 0112221 2233334444455555555555555544211 233444444
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 341 NGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
..|-+.|++.+|.+.++.....+ .-|-..-+-.+..+.+.|+.++|.+++....+.
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 55555555555555555444433 223333333444444455555555554444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-07 Score=89.58 Aligned_cols=370 Identities=13% Similarity=0.029 Sum_probs=228.0
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHH--------------HHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG-EGYVALLVYEQ--------------MMR 185 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~--------------m~~ 185 (806)
+.+.-...+.+|...++-+.|+......++. ....--|.|+..+.+.| +..++.--+.+ ..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 3455566777788888888888888777654 22333344444433332 21122211211 111
Q ss_pred CC---------------CCCCHhHHHHHHHH--HHhcCChhHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHH
Q 037510 186 VG---------------IVPDVFTCSIVVNA--YCKEKSMEKALDFVKEMENL-GFELNVVTYNSLIDGYVSLGDLNGAK 247 (806)
Q Consensus 186 ~~---------------~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (806)
.+ +.|...+...-+.+ .+-.++...|...+-.+... -++.|+.....+..++...|+.++|.
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~ 252 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAE 252 (564)
T ss_pred HhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHH
Confidence 11 12222222223333 33345555555555444332 24557777888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 248 RVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
..|++....++ -+........-.+.+.|+.+....+...+..... -...-|..-...+....++..|+.+-++.++.
T Consensus 253 ~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 253 DIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 88888776432 1222333334445567777777777777665411 12233444444555677788888887777765
Q ss_pred CCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH
Q 037510 328 GLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN 407 (806)
Q Consensus 328 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 407 (806)
+.. +...|-.-...+...|+.++|.-.|+...... +-+...|.-|+..|...|++.+|.-.-+...+. ...+..+.+
T Consensus 330 ~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 330 EPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred Ccc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 322 44445444566777888888888888776653 457788888888888888888888777665543 223444544
Q ss_pred HHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 037510 408 TLL-KGLC-RVGDVDEALHLWLMMLKRCVCPN-EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484 (806)
Q Consensus 408 ~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 484 (806)
.+. ..+. ...--++|.++++..+.. .|+ ......+...+...|..++++.+++..+.. .+|....+.|.+.+.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 442 2222 222346777777776664 343 345667777788888888888888888775 678888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 037510 485 KMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~ 503 (806)
..+.+.+|.+.|......+
T Consensus 483 A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 8888888888888887765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-07 Score=96.89 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=64.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
-....+|.+|+.+++.+.+.. .-..-|..+.+-|...|+++.|.++|.+. ..++..+.+|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~------------------~~~~dai~my 801 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA------------------DLFKDAIDMY 801 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc------------------chhHHHHHHH
Confidence 334455566666655555442 12233444555555666666666555432 1234445555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
.+.|+++.|.++-.+.. |.......|.+-..-+.+.|++.+|.++|-..- .|+. .+..|-+.|..++.+
T Consensus 802 ~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMI 870 (1636)
T ss_pred hccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHH
Confidence 66666666655544433 222233344444444455555555555543221 2221 234455555555555
Q ss_pred HHHHH
Q 037510 643 IFLQK 647 (806)
Q Consensus 643 ~~~~~ 647 (806)
.+.++
T Consensus 871 rlv~k 875 (1636)
T KOG3616|consen 871 RLVEK 875 (1636)
T ss_pred HHHHH
Confidence 54444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.4e-07 Score=95.95 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=131.7
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037510 206 KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENML 285 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 285 (806)
.+...|+..|-+..+... --...|..|...|+...|...|.+.|++.-+.+. -+..++......|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 346667766666665431 2356788899999888888899999998887654 46778888899999999999998885
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 037510 286 RRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLR 365 (806)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 365 (806)
-..-+......-...|....-.|.+.++...|..-|+...+..+. |...|..++.+|...|.+..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 444433111111223334445567788888999999888877544 7788889999999999999999999887764 3
Q ss_pred CCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 366 PDS-FSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 366 ~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
|+. ..---.....|..|.+.+|+..+.....
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 432 2222223345678888888888887764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=89.44 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
+...|...|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|+++++.. +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34457888999999999999999999873 2345688889999999999999999999999863 446778899999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 634 RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 634 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
.+|++++|...|++++....-| ....+|..++.+..+.|+.+.|.+.|++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~------------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYG------------------------------EPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCC------------------------------CcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 9999999999999998763322 1345888899999999999999999999
Q ss_pred HHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 714 LLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 714 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
.++ ..|+.. +.-.+.....+.|++-.|..+++.....+. ++....--.|..-.+.|+.+.|-++=..+.. ..|.
T Consensus 165 aL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~ 239 (250)
T COG3063 165 ALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPY 239 (250)
T ss_pred HHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 999 778874 888999999999999999999999988663 7888887788888899999999999888887 6788
Q ss_pred HhhHHHHH
Q 037510 793 VVTYNILI 800 (806)
Q Consensus 793 ~~~~~~li 800 (806)
..-|....
T Consensus 240 s~e~q~f~ 247 (250)
T COG3063 240 SEEYQTFL 247 (250)
T ss_pred cHHHHhHh
Confidence 77776554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-11 Score=81.35 Aligned_cols=49 Identities=49% Similarity=0.828 Sum_probs=25.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 721 PDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 721 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
||.++||+++.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-07 Score=91.60 Aligned_cols=228 Identities=19% Similarity=0.186 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------H
Q 037510 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYR-------T 513 (806)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 513 (806)
...+.+...+..+++.|++.+....... .+..-++....++...|.+.+.........+.|-. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4556777777888888888888887764 45555566777788888887777777776665521 122222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh-HHHH
Q 037510 514 LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV-TYGA 592 (806)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~ 592 (806)
+..+|.+.++++.|+..|.+. ......|+ ...+....+++........-. .|... -...
T Consensus 304 ~g~a~~k~~~~~~ai~~~~ka---------Lte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~ 363 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKA---------LTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEERE 363 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHH---------hhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHH
Confidence 334556667777777777765 22222222 122333344444444443332 22221 1112
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHH
Q 037510 593 LISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKI 672 (806)
Q Consensus 593 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 672 (806)
-...+.+.|++..|++.|.++++.. +.|...|....-+|.+.|.+..|++-.+..++.++
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p------------------- 423 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP------------------- 423 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-------------------
Confidence 2455667888888888888888764 55777888888888888888888888777777642
Q ss_pred HhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhH
Q 037510 673 AMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTY 726 (806)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 726 (806)
+..-.|.-=+.++....+++.|.+.|++.++ ..|+..-+
T Consensus 424 -------------~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 424 -------------NFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 2333444445556666678888888888877 55766533
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-07 Score=84.32 Aligned_cols=194 Identities=15% Similarity=0.023 Sum_probs=99.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 037510 198 VVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK 277 (806)
Q Consensus 198 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 277 (806)
+.-+|...|++..|..-+++.++.. +.+..++..+...|.+.|+.+.|.+-|++..+..+ .+....|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 4444555555555555555555543 22344555555555555555555555555555432 244445555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 278 MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLR 357 (806)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (806)
+++|...|++.........-..+|..+.-+..+.|+.+.|...|++.++.... .+.+.-.+.....+.|++-.|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 55555555555554333333345555555555555555555555555554322 33344445555555555555555555
Q ss_pred HHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 358 CMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEML 395 (806)
Q Consensus 358 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 395 (806)
.....+ .++..+.-..|+.--..|+.+.+-+.=.++.
T Consensus 198 ~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555444 2444444444444444555554444444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-08 Score=95.99 Aligned_cols=208 Identities=14% Similarity=0.002 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++.++.. +.+...+..++.+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999999863 3357889999999999999999999999999863 3357788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...|++++|.+.+++.++.++. ++. .......+...+++++|.+.|
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~--------------------------------~~~-~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN--------------------------------DPY-RALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--------------------------------CHH-HHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999987533 221 111122234567899999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 712 SALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKI---N--LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 712 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
++.... ..|+...+ .......|++.++ +.++.+.+. . +.| ....|..++..+.+.|++++|..+|++..
T Consensus 189 ~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776642 33443222 2333446666554 345555431 1 112 33578899999999999999999999998
Q ss_pred HCCCC-CCHhhHHHHHH
Q 037510 786 QKGLT-PTVVTYNILID 801 (806)
Q Consensus 786 ~~g~~-p~~~~~~~li~ 801 (806)
+ .. ||.+-+...+-
T Consensus 264 ~--~~~~~~~e~~~~~~ 278 (296)
T PRK11189 264 A--NNVYNFVEHRYALL 278 (296)
T ss_pred H--hCCchHHHHHHHHH
Confidence 7 44 47666665443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-07 Score=92.27 Aligned_cols=415 Identities=15% Similarity=0.091 Sum_probs=216.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCC
Q 037510 235 DGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD-EYAYGVLIDGYCKVGK 313 (806)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 313 (806)
.+.+..||++.|..+|.+.+...+ +|.+.|..-..+|.+.|++++|++--.+-.+. .|+ ...|+-...++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhccc
Confidence 445677888888888888777665 37777777788888888888887766655544 233 4467777777777888
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHH-----HHHHhcCCHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLV-----DGYCRECDMTEAF 388 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~ 388 (806)
+++|+.-|.+-++.... +...++-+.+++ ..+.+. +.. -.+...|..+. +.+.....+..-+
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 88888888877766432 556666666665 111111 111 01111121111 1111111111111
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCC-------CCChhhHHHHHHHHHhcCC
Q 037510 389 RLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK--------RCV-------CPNEVGYCTLLDILFNKGD 453 (806)
Q Consensus 389 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~-------~~~~~~~~~l~~~~~~~g~ 453 (806)
+.+..+ |.. +..+.. .+...+....+.. .+. .|. .-.....-..++
T Consensus 153 ----~~~~~~--p~~------l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d 213 (539)
T KOG0548|consen 153 ----EIIQKN--PTS------LKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIED 213 (539)
T ss_pred ----HHhhcC--cHh------hhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccch
Confidence 111111 110 011111 1111111111111 000 111 000000000000
Q ss_pred hhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037510 454 FYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNL 533 (806)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (806)
..+-.+. ..-..-...+.....+..+++.|.+.+....+.. .+..-++....+|...|.+.+.....+.
T Consensus 214 ~~ee~~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 214 NTEERRV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred hHHHHHH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 0000000 0011123456666777778888888888887764 3445556666778888888777766655
Q ss_pred HHhcccChhhhhcCCCCCHHHHH-------HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 037510 534 MERREILPSMEKEAIVPSIDMYN-------YLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKA 606 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 606 (806)
..+ .|... ..-|+ .+...|.+.++++.+...|++....-..|+. ..+....+++
T Consensus 283 a~E---------~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~ 343 (539)
T KOG0548|consen 283 AVE---------VGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKA 343 (539)
T ss_pred HHH---------HhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHH
Confidence 421 11111 11111 1233555566667777777665543222221 1223334444
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCC
Q 037510 607 FKAYFDMIEKGFSPNV-AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCV 685 (806)
Q Consensus 607 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (806)
.+......-. .|+. .-...-+..+.+.|++.+|...+.++++.++.
T Consensus 344 ~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------------------------------- 390 (539)
T KOG0548|consen 344 LKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------------------------------- 390 (539)
T ss_pred HHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-------------------------------
Confidence 4444443332 2221 12222355666777888888888777776622
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|...|....-+|.+.|.+..|+.-.+..++ +.|+.. .|.-=+.++....+|++|.+.|.+.++
T Consensus 391 -Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 391 -DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888888888888877777777 567664 565556666666777888888877777
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.6e-07 Score=81.55 Aligned_cols=316 Identities=14% Similarity=0.049 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH-HHHHH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSI-VVNAY 202 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-l~~~~ 202 (806)
-|+.++..+.+..++.+|++++..-.++.++ +......|..+|....++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3666677778889999999999988887532 7778888999999999999999999999874 565555543 24667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 037510 203 CKEKSMEKALDFVKEMENLGFELNVVTYNSLID--GYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEE 280 (806)
Q Consensus 203 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (806)
.+.+.+..|+.+...|... ++...-..-+. .....+|+..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7889999999999988653 22222111122 2346788999999999887542 45555556666779999999
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCHhHHHHHH
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLL----ICNSLINGYCKLGQVCEAKRVL 356 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~ 356 (806)
|.+-|....+-+|..|- ..|+..+. ..+.|+++.|++...+++++|+...+. .-.-.++.-.-.+-..-++.-
T Consensus 163 AvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa- 239 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA- 239 (459)
T ss_pred HHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-
Confidence 99999999998788764 36666554 456789999999999999887642221 111111100000000001110
Q ss_pred HHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 357 RCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ-GIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435 (806)
Q Consensus 357 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (806)
-+..+|.-...+.+.|+++.|.+.+-+|.-. ....|++|...+.-.- -.+++.+...-+.-++....
T Consensus 240 ----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP- 307 (459)
T KOG4340|consen 240 ----------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP- 307 (459)
T ss_pred ----------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-
Confidence 1123344444566788888888888888432 2345677766554322 23345555555555555533
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNN 463 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (806)
-...|+..++-.||+..-++.|-+++.+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3567888888889988888888887755
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-06 Score=77.18 Aligned_cols=367 Identities=12% Similarity=0.081 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH-HHHH
Q 037510 333 LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN-TLLK 411 (806)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~ 411 (806)
+.-...+...+...|++.+|+..|....+.+ +.+-.++-.-...|...|+...|+.-+.+.++. +||-..-. --..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3344445555556666666666666555432 112222222334455556666666555555553 44432111 1112
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 037510 412 GLCRVGDVDEALHLWLMMLKRCVCPN--EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKM 489 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 489 (806)
.+.+.|.++.|..-|+.+++.....+ ...+..++- .+ ..+.....+..+...|+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~--------------~~---------e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL--------------IQ---------EHWVLVQQLKSASGSGDC 171 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh--------------HH---------HHHHHHHHHHHHhcCCch
Confidence 34455566666666655555421110 001110000 00 011122234445566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
..|+..+..+.+.. +-|...|..-..+|...|++..|+.-++.. ..-...+....-.+...+...|+.+
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a----------skLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQA----------SKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHH----------HhccccchHHHHHHHHHHHhhhhHH
Confidence 77777777777754 335566666677777777777777655544 1112234445555566666777777
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
.++...++..+. .||....-.. |-+ +.+..+.++.|. ...+.++|.++++-.+...
T Consensus 241 ~sL~~iRECLKl--dpdHK~Cf~~---YKk---lkKv~K~les~e----------------~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 241 NSLKEIRECLKL--DPDHKLCFPF---YKK---LKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHcc--CcchhhHHHH---HHH---HHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHH
Confidence 777777776664 4543321110 000 111111111111 1223344555555555554
Q ss_pred hCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHH
Q 037510 650 DFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYST 728 (806)
Q Consensus 650 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ 728 (806)
+..+.-. .-....+..+-.++...|++.+|++.-.+.++ +.||.+ ++.-
T Consensus 297 k~ep~~~----------------------------~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 297 KNEPEET----------------------------MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred hcCCccc----------------------------ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 4432200 00111233344455555666666666666666 556543 5666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-h------------------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 729 LIHGYAAVGDINEAFNLRDEMLKINLVPN-I------------------ATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~------------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
-..+|.-..+++.|+.-|+++.+.+ ++ . ..|..+ -+-.+.....|-.+.|++|..+ +
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n--~sn~~~reGle~Akrlkkqs~kRDYYKI-LGVkRnAsKqEI~KAYRKlAqk-W 422 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN--ESNTRAREGLERAKRLKKQSGKRDYYKI-LGVKRNASKQEITKAYRKLAQK-W 422 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHhccchHHHH-hhhcccccHHHHHHHHHHHHHh-c
Confidence 6666666666666666666665522 21 1 112211 1233444556777777777643 6
Q ss_pred CCCHh
Q 037510 790 TPTVV 794 (806)
Q Consensus 790 ~p~~~ 794 (806)
.||..
T Consensus 423 HPDNF 427 (504)
T KOG0624|consen 423 HPDNF 427 (504)
T ss_pred CCccc
Confidence 67643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-07 Score=90.37 Aligned_cols=94 Identities=14% Similarity=-0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYC 344 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 344 (806)
|..+...|...|+.++|...|++..+. .+.+...|+.+...+...|++++|...|+...+..+. +...+..+...+.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 444444444445555555555444443 1223344444444444555555555555544443222 2334444444444
Q ss_pred hcCCHhHHHHHHHHHhh
Q 037510 345 KLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 345 ~~g~~~~A~~~~~~~~~ 361 (806)
..|++++|.+.|+...+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44445555444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-07 Score=83.24 Aligned_cols=353 Identities=13% Similarity=0.055 Sum_probs=184.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH-HHHH
Q 037510 264 TYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNS-LING 342 (806)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~ 342 (806)
-+++.+..+.+..+++.|++++..-.+. .+.+....+.+..+|....++..|-..++.+-... |...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 3566666667777777777777666554 22255566677777777777777777777776542 33333322 2344
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHH
Q 037510 343 YCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDG--YCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVD 420 (806)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 420 (806)
+.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 55667777777777766652 222221111121 123556666666665554321 3344444444555667777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHH
Q 037510 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITF----NTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~ 496 (806)
.|.+-|+...+.+--.....|+.. -+..+.|++..|++...+++++|+...+..- .-.+.+- ..|+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt------- 232 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT------- 232 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch-------
Confidence 777777766664333333444433 3444566677777777777766644322110 0000000 00000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLA 576 (806)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
..|...+ -...++.-...+.+.|+++.|.+.+..|. .......|+.+...+.-.- ..+++.+...-++
T Consensus 233 ~~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmP--------PRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 233 LVLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMP--------PRAEEELDPVTLHNQALMN-MDARPTEGFEKLQ 300 (459)
T ss_pred HHHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCC--------CcccccCCchhhhHHHHhc-ccCCccccHHHHH
Confidence 0000000 12234545556778899999988887773 2222334555554433222 2344545555555
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 037510 577 EMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPNVAICSKLVSTLC-RLGKIDEANIFLQKMV 649 (806)
Q Consensus 577 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 649 (806)
-+...+. -...|+..++-.||+..-++.|-.++.+-....+ -.+...|+ +++++. ..-..++|.+-+..+.
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555432 3456888888889998888888777644221111 01233333 333333 3456677766665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-06 Score=88.19 Aligned_cols=200 Identities=11% Similarity=-0.005 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC-cChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCI-PSLR-SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
..+..+...+...|+.+++...+....+.... .+.. ........+...|++++|...+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 34455556666677788877777766554221 1221 22223445667888889988888887753 223333332 22
Q ss_pred HHH----hcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 201 AYC----KEKSMEKALDFVKEMENLGFELN-VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 201 ~~~----~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
.+. ..+....+.+.+... ....|+ ......+...+...|++++|.+.+++..+..+ .+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 222 234444555554441 112233 34445566677888888888888888888653 3566777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCh--HhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDE--YAYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
|++++|...+++........|+. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888877652222332 23446677778888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-07 Score=95.89 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=179.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 037510 504 CLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL 583 (806)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 583 (806)
.+|-...-..+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..++
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------------emw~~vi~CY~~lg~~~kaeei~~q~lek-- 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------------EMWDPVILCYLLLGQHGKAEEINRQELEK-- 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--
Confidence 3444455566778888999999999999877 46777889999999999999998888874
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
+|++..|..+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+...+..+-
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--------- 517 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--------- 517 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc---------
Confidence 788999999988887777788888888765432 1122233334578899999999887765422
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEA 742 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 742 (806)
-..+|-.++.+..+.++.+.|.+.|..... ..||.. +||++..+|.+.|+-.+|
T Consensus 518 -----------------------q~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 518 -----------------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred -----------------------chhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 456898999999999999999999999999 889986 999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 743 FNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 743 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
...++++.+.+ ..+...+.+.+....+.|.+++|++.+.++..
T Consensus 573 ~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 573 FRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999976 45666777777788899999999999998753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-06 Score=85.96 Aligned_cols=200 Identities=15% Similarity=-0.005 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGI-VPDV-FTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLI 234 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 234 (806)
...|..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44666677777777888887777776655422 1222 112222344567889999999998887763 334444442 2
Q ss_pred HHHH----hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 037510 235 DGYV----SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310 (806)
Q Consensus 235 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 310 (806)
..+. ..|..+.+.+.++.... ..+........+...+...|++++|.+.+++..+. .+.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 2222 23445555555544111 11112334445566778888888888888888875 34456677777888888
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCh--hHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 311 VGKVDEAIRVLNEMLKTGLE-MNL--LICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
.|++++|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888888888887765321 222 2455677788888888888888888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-07 Score=93.51 Aligned_cols=221 Identities=17% Similarity=0.068 Sum_probs=174.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKI 638 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 638 (806)
..-+.+.|++.+|.-.|+..++.. +-+...|..|...-...++-..|+..+++.++.. +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678899999999999998873 3356789999888889999999999999999863 44678888999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChhhhh--hh--------hhhhhHHHHHhhhHHhhhcC-CCCChHHHHHHHHHHHhcCChhhH
Q 037510 639 DEANIFLQKMVDFDFVPDLKYMA--SS--------AINVDAQKIAMSLDESARSL-CVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
.+|.+.+++-+...+.--+.... .. .-...-.++...+-+..... ..+|+.+...|+-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999999988765322111010 00 01112223333333333333 358889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 708 RRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
++.|+.++. ..|+.. .||-|+..++...+.++|+..|.++++ +.|.. .....|+-.|...|.++||.+.|-..+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999 889875 899999999999999999999999999 78964 466778899999999999999988754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-08 Score=94.53 Aligned_cols=252 Identities=16% Similarity=0.147 Sum_probs=150.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+.-.|.+..++.-.+ ........+......+.+++...|+++.++.- + ..+..|.......+...+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i----------~~~~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---I----------KKSSSPELQAVRLLAEYL 76 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-----------TTSSCCCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---h----------ccCCChhHHHHHHHHHHH
Confidence 344566666665444 22211111233444556777777776654432 1 122255555554454444
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTY-GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
...++-+.+..-+++....+..++..++ ......+...|++++|++++.+. .+.......+..|.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 3334444554444443333222222222 22334566788999888877542 3566667778889999999999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH----HhcCChhhHHHHHHHHHHC
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI----CKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~ 717 (806)
.+.++.|.+.+- |. +...+..++ ....++.+|..+|+++.+.
T Consensus 151 ~k~l~~~~~~~e---------------------------------D~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 151 EKELKNMQQIDE---------------------------------DS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp HHHHHHHHCCSC---------------------------------CH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC---------------------------------cH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 999999876542 21 222233333 2234689999999998764
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC
Q 037510 718 GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGEL-DRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 718 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~ 792 (806)
..++..+.+.++.++...|++++|.++++++++.. .-++.+...++.+....|+. +.+.+++.++.. ..|+
T Consensus 197 -~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~ 268 (290)
T PF04733_consen 197 -FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPN 268 (290)
T ss_dssp -S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTT
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCC
Confidence 45677788999999999999999999999987643 22677888888888888887 677788888876 4554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-07 Score=93.08 Aligned_cols=261 Identities=15% Similarity=0.166 Sum_probs=175.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 037510 446 DILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLE 525 (806)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 525 (806)
.-+.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34566777777777777777764 4456677777777777777777777777777765 345566666666677777766
Q ss_pred HHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH
Q 037510 526 EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNK 605 (806)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 605 (806)
.|++.++.-. ... |. |..+ ...+ ++...-.. ..+.....+..
T Consensus 371 ~Al~~L~~Wi---------~~~--p~---y~~l--------------------~~a~--~~~~~~~~--~s~~~~~~l~~ 412 (579)
T KOG1125|consen 371 QALKMLDKWI---------RNK--PK---YVHL--------------------VSAG--ENEDFENT--KSFLDSSHLAH 412 (579)
T ss_pred HHHHHHHHHH---------HhC--cc---chhc--------------------cccC--ccccccCC--cCCCCHHHHHH
Confidence 7766665441 100 00 0000 0000 00000000 01111122233
Q ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCC
Q 037510 606 AFKAYFDMI-EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLC 684 (806)
Q Consensus 606 A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (806)
..++|-++. ..+..+|+.+...|.-.|.-.|++++|...|+.++...+
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P------------------------------- 461 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP------------------------------- 461 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-------------------------------
Confidence 344454444 455457888899999999999999999999999998753
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------C
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKIN---------L 754 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~ 754 (806)
.|..+||-|+..++...+.++|+..|+++++ +.|.-+ +...|+-+|...|.+++|.+.|-+++... .
T Consensus 462 -nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 462 -NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred -chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 3788999999999999999999999999999 899987 77889999999999999999999987621 1
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 755 VPNIATYNSLVSGLCNSGELDRAKRL 780 (806)
Q Consensus 755 ~p~~~~~~~l~~~~~~~g~~~~A~~~ 780 (806)
.++..+|.+|=.++.-.++.|.+...
T Consensus 539 ~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 539 MASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHh
Confidence 11234677777777777776655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-05 Score=74.80 Aligned_cols=207 Identities=15% Similarity=0.157 Sum_probs=152.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKI 638 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 638 (806)
+..+...|+...|+.....+.+.. +-|...+..-..+|...|.+..|+.=++...+.. ..+..+...+...+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 345667899999999999998852 3466677777889999999999998888777642 44566777788889999999
Q ss_pred HHHHHHHHHHhhCCCCCChh-hhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 639 DEANIFLQKMVDFDFVPDLK-YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+.++..+++.++.+ ||+. |... +....++...+.+ +......+++.++++..+...+
T Consensus 240 ~~sL~~iRECLKld--pdHK~Cf~~---YKklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk- 297 (504)
T KOG0624|consen 240 ENSLKEIRECLKLD--PDHKLCFPF---YKKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLK- 297 (504)
T ss_pred HHHHHHHHHHHccC--cchhhHHHH---HHHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHh-
Confidence 99999999998865 5543 2211 1111122222211 1234567889999999999988
Q ss_pred CCCCCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 718 GFSPDNF-----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 718 g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
..|... .+..+-.++...|++.+|++...++++ +.|| ..++..-..+|.-..++++|+.-|++..+ +.+
T Consensus 298 -~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~ 372 (504)
T KOG0624|consen 298 -NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNE 372 (504)
T ss_pred -cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCc
Confidence 567632 344455667778999999999999998 6774 77888888899999999999999999887 555
Q ss_pred CHh
Q 037510 792 TVV 794 (806)
Q Consensus 792 ~~~ 794 (806)
+..
T Consensus 373 sn~ 375 (504)
T KOG0624|consen 373 SNT 375 (504)
T ss_pred ccH
Confidence 543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-05 Score=93.74 Aligned_cols=380 Identities=12% Similarity=-0.027 Sum_probs=230.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 037510 339 LINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGD 418 (806)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 418 (806)
....+...|++.+|........... .-..............|+++.+..++..+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 3444556677766665544332110 00011111223344567777777776655221111223333344455567889
Q ss_pred HHHHHHHHHHHHHcCC------CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH----HHHHHHHHHHHhc
Q 037510 419 VDEALHLWLMMLKRCV------CPN--EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT----ITFNTMIKGLCKM 486 (806)
Q Consensus 419 ~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 486 (806)
++++...+......-. .+. ......+...+...|+++.|...+++........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999888887754311 111 112233445566899999999999988763111121 2345566677889
Q ss_pred CCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC--C-CHHHHHHH
Q 037510 487 GKMTEAQKIFDKMKELGC---LPN--IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV--P-SIDMYNYL 558 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l 558 (806)
|++++|...+.+.....- .+. ..++..+...+...|++++|...++...... ...+.. + ....+..+
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI-----EEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhccccccHHHHHHHHH
Confidence 999999999988764311 111 2345566778889999999999988763211 111111 1 23345556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCC--CCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHH--HH--HHH
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMG--LYPN--IVTYGALISGWCDAGMLNKAFKAYFDMIEKG--FSPNVA--IC--SKL 628 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g--~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l 628 (806)
...+...|++++|...+++..... ..+. ...+..+...+...|+.++|.+.+.++.... ...... .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 677788899999999998876531 1122 3344445666778999999999998886521 111111 10 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|+.+.|..++........... ......+..+..++...|+.++|.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANN----------------------------HFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccc----------------------------hhHHHHHHHHHHHHHHcCCHHHHH
Confidence 2344568899999998877543211100 001112456777889999999999
Q ss_pred HHHHHHHHC----CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 709 RIFSALLLT----GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 709 ~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
..+++.... |..++. .++..++.++.+.|+.++|...+.++++..
T Consensus 712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999998763 333333 367788899999999999999999999843
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-05 Score=93.87 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=48.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-cHHHHHHHHHHHHh
Q 037510 414 CRVGDVDEALHLWLMMLKRCVCPN---EVGYCTLLDILFNKGDFYGAVKLWNNILAR----GFYK-NTITFNTMIKGLCK 485 (806)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~ 485 (806)
...|+.+.|...+........... ...+..+..++...|++++|...+++.... |... ...+...+..++..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 335556666555544332111111 011234555666667777776666665542 1111 12344555666777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 037510 486 MGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~ 503 (806)
.|+.++|...+.+..+..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 788888888877777654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=91.20 Aligned_cols=251 Identities=14% Similarity=0.110 Sum_probs=141.0
Q ss_pred HHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh
Q 037510 130 KIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSME 209 (806)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 209 (806)
+-+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 333322234445566777888888766544 333222 3555555555544443334445
Q ss_pred HHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 210 KALDFVKEMENLGFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 210 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
.+..-+++.......+ +..........+...|++++|.++++.. .+.......+.+|.+.+|++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443333222 2223333334556678888887777542 35566667777888888888888888887
Q ss_pred HhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 037510 289 KEEDDVIVDEYAYGVLIDGYCK----VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 364 (806)
.+.+ +..+...+..++.. ...+.+|.-+|+++... +.+++.+.+.+..++...|++++|.+++.+..+.+
T Consensus 158 ~~~~----eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQID----EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HCCS----CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HhcC----CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 6542 23344445554433 23577777777776554 45567777777777777777777777777766554
Q ss_pred CCChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 037510 365 RPDSFSFNTLVDGYCRECDM-TEAFRLCAEMLRQ 397 (806)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 397 (806)
+-+..+...++......|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 33445555555555556665 4455566665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00058 Score=73.13 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=135.1
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCL-LSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 212 (806)
..+++..|....+++.+.. ||......+ .-.+.+.|+.++|..+++.....+.. |..|...+-.+|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4578888888888887753 443322222 22356889999999888877655433 7788888888899999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHH
Q 037510 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK----------MEEAE 282 (806)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~ 282 (806)
.++++.... .|+......+..+|.+.+++.+-.+.--++-+. ++.+...+=++++.+.+.-. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998875 466777778888888888877655444444332 22234443344444433211 22455
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLN-EMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
+.++.+.+.+|-..+..-.......+-..|++++|..++. ...+.-...+...-+.-++.+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5556665554311122222222334445666777777763 333332333444445556666666777766666666665
Q ss_pred CC
Q 037510 362 WN 363 (806)
Q Consensus 362 ~~ 363 (806)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-07 Score=78.18 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
.+..++..+...|++++|...|+..+. ..|+. .+|..++.++...|++++|+..|+++++ +.| ++..+..++.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 455678899999999999999999999 77866 5899999999999999999999999998 456 78899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
+.+.|+.++|...+++..+ +.|+...|..
T Consensus 102 l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~ 130 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIK--MSYADASWSE 130 (144)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 9999999999999999988 7787655543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-06 Score=79.61 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=68.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
.++.++++..+++.++.+ +.|...|..+...|...|++++|...+++..+.++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------------------------- 105 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------------------------- 105 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------
Confidence 445556666666655542 345566666666666666666666666666655422
Q ss_pred hhcCCCCChHHHHHHHHHH-HhcCC--hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 680 ARSLCVPNYVVYNIVIAGI-CKSGN--VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+..++..+..++ ...|+ .++|.+++++.++ ..|+. .++..++..+.+.|++++|+..|+++++
T Consensus 106 -------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 106 -------NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred -------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555543 44454 3666666666666 45544 3566666666666666666666666665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-06 Score=82.13 Aligned_cols=170 Identities=14% Similarity=0.052 Sum_probs=119.9
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN---VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
....+..++..+...|++++|...++++++.. +.+ ...+..+..++...|++++|...++++++..+...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP------ 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC------
Confidence 34455666667777888888888888777642 112 23556677778888888888888888876643210
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc--------CChhhHHHHHHHHHHCCCCCCHH-hH-------
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS--------GNVTDARRIFSALLLTGFSPDNF-TY------- 726 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~-~~------- 726 (806)
.-..++..++.++... |++++|.+.|+++.+ ..|+.. .+
T Consensus 105 -----------------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 105 -----------------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD 159 (235)
T ss_pred -----------------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH
Confidence 0112344455555543 778899999999988 567653 21
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 727 ----------STLIHGYAAVGDINEAFNLRDEMLKINL-VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 727 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
..++..|.+.|++++|+..++++++..- .| ....+..++.++.+.|++++|.++++.+...
T Consensus 160 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456778899999999999999998421 12 3467889999999999999999999998763
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-05 Score=79.97 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=147.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 556 NYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAG-MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
..+-..+...++.++|+.+..++.+. .|+ ..+|+.-..++...| .+++++..++++++.+ +.+..+|......+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33444556677888999999988876 343 445666666666667 5789999999988764 335566776666666
Q ss_pred hcCCH--HHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 634 RLGKI--DEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 634 ~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+.|+. +++..+++++++.+.. |..+|+....++...|++++|++.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk--------------------------------Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK--------------------------------NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc--------------------------------cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77763 6788888888877643 7778998888999999999999999
Q ss_pred HHHHHCCCCCCH-HhHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc----CCHHHHH
Q 037510 712 SALLLTGFSPDN-FTYSTLIHGYAAV---GD----INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS----GELDRAK 778 (806)
Q Consensus 712 ~~~~~~g~~p~~-~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~ 778 (806)
+++++ ..|+. .+|+....++.+. |. .++++++..+++. +.| |...|+.+...|... ++..+|.
T Consensus 166 ~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 166 HQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 99998 55654 4787777776554 22 2467788878877 456 677888888777773 4456788
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 779 RLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 779 ~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
+.+.+..+.+ ..+......|++.|+
T Consensus 242 ~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 242 SVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 8888876632 223445555666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-05 Score=77.03 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=163.3
Q ss_pred HHhcCChHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 518 YCKVGNLEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSR-ELTSLVDLLAEMQTMGLYPNIVTYGALIS 595 (806)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 595 (806)
+...+..++|+.+.+.+. . ..| +..+|+.-..++...| ++++++..++++.+.. +-+..+|+....
T Consensus 47 l~~~e~serAL~lt~~aI---------~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 47 YASDERSPRALDLTADVI---------R--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHcCCCCHHHHHHHHHHH---------H--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 334566777777777652 1 223 3445666666666677 5799999999998863 334556776666
Q ss_pred HHHccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 596 GWCDAGML--NKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 596 ~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
.+.+.|.. ++++.+++++++.. +-+..+|.....++...|+++++++.++++++.++.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~------------------- 174 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR------------------- 174 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-------------------
Confidence 66666653 67899999999864 447889999999999999999999999999998754
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhc---CCh----hhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhc----CCHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKS---GNV----TDARRIFSALLLTGFSPDNF-TYSTLIHGYAAV----GDINE 741 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----g~~~~ 741 (806)
|..+|+.....+.+. |.. +++++...++++ ..|+.. +|+.+...+... +...+
T Consensus 175 -------------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 175 -------------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred -------------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 566787777666554 222 467888888888 778774 899998888873 44567
Q ss_pred HHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC------------------CHHHHHHHHHHHHHCCCCCCHh
Q 037510 742 AFNLRDEMLKINLVP-NIATYNSLVSGLCNSG------------------ELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 742 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
|.+.+.+..+. .| ++.....|++.|+... ..++|.++++.+.+ ..|=..
T Consensus 240 ~~~~~~~~~~~--~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~--~d~ir~ 307 (320)
T PLN02789 240 VSSVCLEVLSK--DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV--ADPMRR 307 (320)
T ss_pred HHHHHHHhhcc--cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh--hCcHHH
Confidence 98999887773 34 6677888899988643 34678888888843 555433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00088 Score=67.52 Aligned_cols=166 Identities=10% Similarity=0.147 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 553 DMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
.+|-.+++...+...++.|..+|.++.+.+..+ ++..+++++.-+| .++...|.++|+--+++ +..++.-....++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 456667777788888999999999999987777 6677777877665 57889999999987765 33345555667788
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...++-..+..+|++.+..++.|+ ....+|..++.--..-|++..++++-
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~-----------------------------ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSAD-----------------------------KSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChh-----------------------------hhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8899999999999999998865543 23458999999889999999999888
Q ss_pred HHHHHC---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 712 SALLLT---GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 712 ~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
+++... ...|....-..+++-|.-.+.+..-..-++.+
T Consensus 496 kR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 496 KRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 877653 01222223344566666666655444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-06 Score=90.37 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
..+...+..|.....+.|.+++|..+++.+.+..+. +......++.++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--------------------------------~~~a~~~~a~~L 130 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--------------------------------SSEAFILMLRGV 130 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--------------------------------cHHHHHHHHHHH
Confidence 445666666666666677777777777766665322 444555666666
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
.+.+++++|+..+++... ..|+.. .+..++.++.+.|++++|+.+|+++... .| +..++..+..++...|+.++
T Consensus 131 ~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 677777777777777666 556654 5566666666677777777777776662 23 35566666666667777777
Q ss_pred HHHHHHHHHH
Q 037510 777 AKRLFCKLRQ 786 (806)
Q Consensus 777 A~~~~~~m~~ 786 (806)
|...|++..+
T Consensus 207 A~~~~~~a~~ 216 (694)
T PRK15179 207 ARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-08 Score=59.59 Aligned_cols=32 Identities=38% Similarity=0.816 Sum_probs=17.9
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 753 NLVPNIATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 753 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0017 Score=69.63 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=142.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 037510 167 LVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNA--YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN 244 (806)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (806)
....+++..|+....++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...|..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999988888875 35543 3445555 45889999999999888776644 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC-C---------h
Q 037510 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG-K---------V 314 (806)
Q Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~ 314 (806)
+|..+|++..... |+......+..+|.+.+++.+-.+.--++-+. .+-+.+.+=.+++.....- . +
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998865 56777777888888888776543333333332 3334444444454444321 1 2
Q ss_pred HHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCHhHHHHHHH-HHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 315 DEAIRVLNEMLKTG-LEMNLLICNSLINGYCKLGQVCEAKRVLR-CMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 315 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
.-|....+.+.+.+ ..-+..-...-...+...|++++|.+++. ...+.-..-+...-+--+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455555555543 11111111122233445677888888873 33333222333334455666667777888887777
Q ss_pred HHHHCCC
Q 037510 393 EMLRQGI 399 (806)
Q Consensus 393 ~m~~~g~ 399 (806)
++...|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 7777653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.5e-06 Score=74.99 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=121.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
+..|...|+++......+.+.. |. ..+...++.+++...+++.++.++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-------------------- 70 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-------------------- 70 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC--------------------
Confidence 3457778887776444332221 11 012236777888888888887753
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHH-HhcCC--HHHHHHHHHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGY-AAVGD--INEAFNLRDEM 749 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~--~~~A~~~~~~~ 749 (806)
.|...|..++..|...|++++|...|++..+ +.|+.. .+..++.++ ...|+ .++|.++++++
T Consensus 71 ------------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 71 ------------QNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred ------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3888999999999999999999999999999 778764 788888874 67777 59999999999
Q ss_pred HHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 750 LKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 750 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
++ ..| +...+..++..+.+.|++++|...++++.+ ..|....-..+|++
T Consensus 137 l~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~~~~~r~~~i~~ 186 (198)
T PRK10370 137 LA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD--LNSPRVNRTQLVES 186 (198)
T ss_pred HH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccHHHHHHH
Confidence 99 456 778889999999999999999999999987 44444444455554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=87.54 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhH
Q 037510 491 EAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTS 570 (806)
Q Consensus 491 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
.|.++-+..... |.....|-..+.-....++.++|+++.++.....-.. .-.--..+|.++++.....|.-+.
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-----EeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR-----EEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-----hhHHHHHHHHHHHhHHHhhCcHHH
Confidence 344443333332 4456788888888889999999999998873221000 001123467778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 571 LVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
..++|+++.+. --....|..|...|.+.+.+++|.++++.|.++ +......|...+..+.++.+-++|..+++++++
T Consensus 1516 l~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1516 LKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999998874 112345788899999999999999999999986 456788899999999999999999999999887
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHH
Q 037510 651 FDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTL 729 (806)
Q Consensus 651 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 729 (806)
.-+.. .+.....-.+..-.+.|+.+++..+|+..+. -.|.. ..|+.+
T Consensus 1593 ~lPk~------------------------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1593 SLPKQ------------------------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVY 1640 (1710)
T ss_pred hcchh------------------------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHH
Confidence 53321 1344555566677899999999999999988 45654 589999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc-CC
Q 037510 730 IHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS-GE 773 (806)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-g~ 773 (806)
++.=.+.|+.+-+..+|++++..++.| ....+....-.|.+. |+
T Consensus 1641 id~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 999999999999999999999988877 444444444445544 55
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-06 Score=74.10 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=133.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
..+-..+...|+-+.+..+..+.... .+.|.......+....+.|++.+|...++++....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------------ 130 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------------ 130 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------------------
Confidence 55666777888888888777775543 24466666778888999999999999999998754
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
++|..+|+.++-+|.+.|+.++|..-|.+.++ +.|+. ..++.|+..|.-.|+.+.|..++...
T Consensus 131 --------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 131 --------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred --------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 35899999999999999999999999999999 77876 48899999999999999999999999
Q ss_pred HHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 750 LKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 750 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
...+ .-|..+-..|.......|++++|.++...-.
T Consensus 195 ~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 195 YLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9843 2377788889999999999999999876543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-06 Score=73.61 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..+...+...|++++|...|+.++..++ .+..+|..++.++...|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------------------~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--------------------------------WSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------------------CcHHHHHHHHHHHHHHhhH
Confidence 44455666677777777777777665542 2556677777777777777
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
++|+..|+++.+ ..|+. .++..++.++...|++++|+..|+++++ +.|+
T Consensus 75 ~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~ 124 (144)
T PRK15359 75 TTAINFYGHALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYA 124 (144)
T ss_pred HHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 777777777776 55654 3667777777777777777777777776 4453
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.7e-08 Score=58.41 Aligned_cols=29 Identities=45% Similarity=0.725 Sum_probs=11.4
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037510 224 ELNVVTYNSLIDGYVSLGDLNGAKRVLEW 252 (806)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (806)
.||..+||+||++||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-05 Score=81.98 Aligned_cols=215 Identities=16% Similarity=0.098 Sum_probs=151.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 037510 160 CNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVS 239 (806)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (806)
--.+...+...|-...|..+|+++. .|..++.+|+..|+..+|..+..+-.+. +|+...|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3455667777888888888887654 3556777888888888888887777763 6777777777777666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH
Q 037510 240 LGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIR 319 (806)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (806)
.--+++|.++++....+ +-..+.......++++++.+.|+.-.+... .-..+|..+..+..+.+++..|.+
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHHHHH
Confidence 66677777777655432 333333334456788888888877766532 344567777777778888888888
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 320 VLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
.|...+...+. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.++..
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88877765322 56678888888888888888888888877766 44555666666667777888888888777754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-05 Score=78.01 Aligned_cols=185 Identities=14% Similarity=-0.001 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H---hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--H
Q 037510 549 VPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-I---VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--V 622 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 622 (806)
......+-.++..+...|++++|...++++... .|+ . ..+..+..++...|++++|+..++++++...... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 345667777888999999999999999999875 333 2 4667788889999999999999999998632111 1
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHH
Q 037510 623 AICSKLVSTLCRL--------GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIV 694 (806)
Q Consensus 623 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 694 (806)
..+..+..++... |++++|.+.++++++..+....... ...........+ ......+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----a~~~~~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD----AKKRMDYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH----HHHHHHHHHHHH-----------HHHHHHH
Confidence 2455666666654 7899999999999987544211100 000000000000 0112356
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
...|.+.|++++|+..+++.++. .|+ ...+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVEN--YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH--CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999984 343 248899999999999999999999988763
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-05 Score=83.66 Aligned_cols=237 Identities=11% Similarity=0.066 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL-GCLPN---IITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
.|.++-+.++.. +.+...|-..+....+.++.++|.++.+++... +++-. ...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 444444444443 456677888888899999999999999998763 11111 245777777777778888888888
Q ss_pred HHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 037510 532 NLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYF 611 (806)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 611 (806)
+++ .+ +.....+|..|...|.+.+..++|.++++.|.++ ..-....|..++..+.+..+-+.|..++.
T Consensus 1521 eRA---------cq--ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1521 ERA---------CQ--YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHH---------HH--hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 876 22 3344567888999999999999999999999986 23467789999999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHH
Q 037510 612 DMIEKGFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVV 690 (806)
Q Consensus 612 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (806)
++++.-.+. ........+..-.+.|+.+.+..+|+......++ ....
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK--------------------------------RtDl 1636 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK--------------------------------RTDL 1636 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc--------------------------------chhH
Confidence 999862221 3445556667777999999999999999877644 4569
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGD 738 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~ 738 (806)
|+..++.-.++|+.+.+..+|+++++.++.|... .|.-.+.-=-..|+
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999988888764 45444443333455
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.3e-05 Score=68.12 Aligned_cols=247 Identities=16% Similarity=0.137 Sum_probs=157.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+.-.|.+..++.......... .+...-.-+.++|...|.+.....- .+.+..|.......+....
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e-------------I~~~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE-------------IKEGKATPLQAVRLLAEYL 82 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc-------------cccccCChHHHHHHHHHHh
Confidence 334466666665555443331 2333444455677777765443221 1222244444444444444
Q ss_pred HhcCCHhHHHH-HHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037510 563 FKSRELTSLVD-LLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 563 ~~~~~~~~a~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
..-++.+.-.. +.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 33444443323332333333445889999999998876621 233333334566788899999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH----hcCChhhHHHHHHHHHHC
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC----KSGNVTDARRIFSALLLT 717 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~ 717 (806)
.+.+++|.+.+ +..+.+-|..++. ..+...+|.-+|++|.++
T Consensus 157 ~~~lk~mq~id----------------------------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k 202 (299)
T KOG3081|consen 157 EKELKKMQQID----------------------------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK 202 (299)
T ss_pred HHHHHHHHccc----------------------------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc
Confidence 99999998764 4456666666664 345689999999999885
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037510 718 GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRA-KRLFCKLRQ 786 (806)
Q Consensus 718 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 786 (806)
..|+..+.+..+.++...|++++|..++++++.+. ..++.+...++.+-...|+-.++ .+.+..+..
T Consensus 203 -~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 203 -TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 67888999999999999999999999999999853 34788888888877777776444 456666665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=65.89 Aligned_cols=189 Identities=22% Similarity=0.266 Sum_probs=128.0
Q ss_pred cCCHhHHHHHHHHHHH---CC-CCCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 565 SRELTSLVDLLAEMQT---MG-LYPNIV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~---~g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++... ++-+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4456777777776654 23 344433 3444455556778888888888888775 3222222222233355678888
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
+|.++++.+++.++. |.+++---+...-.+|+.-+|++.+.+.++. +
T Consensus 104 ~A~e~y~~lL~ddpt--------------------------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F 150 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT--------------------------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-F 150 (289)
T ss_pred hHHHHHHHHhccCcc--------------------------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-h
Confidence 999999888877633 5566666666677778777888888887774 5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC
Q 037510 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG---ELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p 791 (806)
.-|..+|.-|...|...|++++|.-.+++++- +.| ++..+..+...+.-.| +++-|.++|.+..+ +.|
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 55667888888888888888888888888887 566 5666666666655444 35678888888777 444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-05 Score=83.83 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLC 769 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 769 (806)
++--+-..|...++|++++.+++.+++. .| |.....-++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 3444445566677888888888888883 44 5566677777766
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0028 Score=64.03 Aligned_cols=424 Identities=12% Similarity=0.106 Sum_probs=239.8
Q ss_pred CCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHH
Q 037510 64 FRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALH 143 (806)
Q Consensus 64 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (806)
.+-|..+|+.|++-+... ..++++...++++. .++.++.++..-++.-.+.++++...+
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--------------------~FP~s~r~W~~yi~~El~skdfe~VEk 74 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--------------------VFPSSPRAWKLYIERELASKDFESVEK 74 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--------------------cCCCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 355788999999988665 89999998888864 467788888888999999999999999
Q ss_pred HHHHhhhcCCCcChhhHHHHHHHHHHc-CChHH----HHHHHHHH-HHCCCCCCH-hHHHHHHHH---------HHhcCC
Q 037510 144 VFDNMGKYGCIPSLRSCNCLLSNLVKN-GEGYV----ALLVYEQM-MRVGIVPDV-FTCSIVVNA---------YCKEKS 207 (806)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~----A~~~~~~m-~~~~~~~~~-~~~~~l~~~---------~~~~g~ 207 (806)
+|.+....- .++..|..-++--.+. |.... -.+.|+-. .+.|+.+-+ ..|+..+.- +....+
T Consensus 75 LF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QR 152 (656)
T KOG1914|consen 75 LFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQR 152 (656)
T ss_pred HHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHH
Confidence 999887642 4677787777654432 22222 22344433 334544332 234443332 334456
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHH------HHHHHH-------HhCCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYN------SLIDGY-------VSLGDLNGAKRVLEWTCE--KGISRTAVTYTTLTKGY 272 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~------~li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~ 272 (806)
.+..++++.++...-+..=...|+ .=|... -+..++-.|+++++++.. +|...+..+ .
T Consensus 153 I~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------v 225 (656)
T KOG1914|consen 153 ITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------V 225 (656)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------C
Confidence 677788888887643221111111 111111 123345566666666543 233222222 0
Q ss_pred HhcCCHHHHH--HHHHHH---HhcCCCC-CChH--------hHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChhHHH
Q 037510 273 CKQHKMEEAE--NMLRRM---KEEDDVI-VDEY--------AYGVLIDGYCKV-GKVDEAIRVLNEMLKTGLEMNLLICN 337 (806)
Q Consensus 273 ~~~g~~~~a~--~~~~~~---~~~~~~~-~~~~--------~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (806)
-..|-.++.. +++... .+.++.. .+.. +|...+..+.-. .-+-++-..+.+.
T Consensus 226 p~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~------------- 292 (656)
T KOG1914|consen 226 PPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI------------- 292 (656)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------
Confidence 0111111111 111111 1111111 1110 111111110000 0000111111110
Q ss_pred HHHHHHHhcCC-------HhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCcchHH
Q 037510 338 SLINGYCKLGQ-------VCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE---CDMTEAFRLCAEMLRQGIEPSVVTYN 407 (806)
Q Consensus 338 ~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~ 407 (806)
-+.+...|+ -+++..+++...+.-..-+..+|..+...--.. .+.+.....+++++..-..--..+|.
T Consensus 293 --s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~ 370 (656)
T KOG1914|consen 293 --SDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYC 370 (656)
T ss_pred --hHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehh
Confidence 011222222 355666666554432233444454444322111 23566677777776542222335677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 037510 408 TLLKGLCRVGDVDEALHLWLMMLKRCVCP-NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKM 486 (806)
Q Consensus 408 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 486 (806)
..++.-.+..-+..|..+|.+..+.+..+ ++...+.++..|| .++..-|.++|+--+++ +..++.--...+..+...
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~l 448 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHL 448 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHh
Confidence 78888888888899999999998877666 6667777776655 56788888888877665 233444556778888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 487 GKMTEAQKIFDKMKELGCLPN--IITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
++-..+..+|++....++++| ...|..+++--..-|+...+.++-+++
T Consensus 449 Ndd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 449 NDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred CcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 998999999999988766655 378899998888899998888876655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-06 Score=71.32 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+......++..+...|++++|.+.|+++.+ ..|+. ..|..++..+...|++++|...++++++.+ ..+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 445677788899999999999999999998 55754 588899999999999999999999998853 33677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.++...|++++|..++++..+ ..|+...+..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHH
Confidence 999999999999999999998 6788777655543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-05 Score=68.96 Aligned_cols=159 Identities=12% Similarity=0.042 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 196 SIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 196 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
...-..+...|+-+....+....... .+.|......++....+.|++..|...|.+.....+ +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 44455555666666666665554332 133455555667777777777777777777766543 5677777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHH
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRV 355 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (806)
|++++|..-|.+..+. .+-+...++.+...+.-.|+.+.|..++......+.. |..+-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 7777777777777665 3334556677777777777777777777777665432 555666666666777777777776
Q ss_pred HHHH
Q 037510 356 LRCM 359 (806)
Q Consensus 356 ~~~~ 359 (806)
-..-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00022 Score=65.12 Aligned_cols=253 Identities=15% Similarity=0.156 Sum_probs=155.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037510 413 LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEA 492 (806)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 492 (806)
+.-.|.+..++..-...... +.+...-..+.++|...|.+.....- +.... .+.......+...+..-++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 33344554444433333222 12334444455555555555433322 22211 23344444444444444544443
Q ss_pred HH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 037510 493 QK-IFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSL 571 (806)
Q Consensus 493 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 571 (806)
.. +.+.+.......+......-...|+..|++++|++..... .+.+....=+..+.+..+.+-|
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---------------~~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---------------ENLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---------------chHHHHHHHHHHHHHHHHHHHH
Confidence 33 3344444333334344444456688899999998876532 2334444445667788889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 572 VDLLAEMQTMGLYPNIVTYGALISGWC----DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQK 647 (806)
Q Consensus 572 ~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 647 (806)
.+.+++|.+- .+..|.+-|..++. ..+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++
T Consensus 157 ~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 9999999874 25556666666654 345788999999999875 588999999999999999999999999999
Q ss_pred HhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH-HHHHHHHHHCCCCCCHH
Q 037510 648 MVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA-RRIFSALLLTGFSPDNF 724 (806)
Q Consensus 648 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~g~~p~~~ 724 (806)
++.++.. ++.+...++.+-...|...++ .+.+.++.. ..|+..
T Consensus 233 aL~kd~~--------------------------------dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~ 276 (299)
T KOG3081|consen 233 ALDKDAK--------------------------------DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHP 276 (299)
T ss_pred HHhccCC--------------------------------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcch
Confidence 9987643 566777777666667765544 455566665 556543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00014 Score=72.60 Aligned_cols=156 Identities=22% Similarity=0.205 Sum_probs=118.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
-.+...|++++|...++.++.. .+.|+..+....+.+.+.++.++|.+.++++....+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-------------------- 372 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-------------------- 372 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------------
Confidence 3455788999999999998876 3446666677788888999999999999999877532
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
.....-.+..+|.+.|++.+|+.+++.... -.|+. ..|..|..+|...|+..+|.....++
T Consensus 373 ------------~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~---- 434 (484)
T COG4783 373 ------------SPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG---- 434 (484)
T ss_pred ------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH----
Confidence 355677788899999999999999998887 45654 58999999999999988887665554
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHhh
Q 037510 754 LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQK--GLTPTVVTYNILIDGY 803 (806)
Q Consensus 754 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~ 803 (806)
|...|++++|+..+....++ .-.|+..-+...|+..
T Consensus 435 --------------~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 435 --------------YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred --------------HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 44678888888888887764 3445555556666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=79.68 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=113.4
Q ss_pred hhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH
Q 037510 115 YKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT 194 (806)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 194 (806)
.++...+++++..|.+...+.|.+++|..+++...+..+ .+..+...++..+.+.+++++|+..+++.+...+ -+...
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~ 156 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSARE 156 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHH
Confidence 356667788888888888888889999988888888653 2566778888888888888888888888887542 24556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037510 195 CSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL 268 (806)
Q Consensus 195 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (806)
...+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|+...+..- +....|+.+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 6677778888888888888888888743 33577888888888888888888888888876421 344454443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00036 Score=63.22 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=142.0
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcC-CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHH
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEA-IVPSI-DMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNI-VTYGALISGWC 598 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 598 (806)
.+.++..+++..+... ...+ ..++. ..|..++-+....|+.+.|...++++...- |.. ..-..-..-+.
T Consensus 26 rnseevv~l~~~~~~~------~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNY------SKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHH------hhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHH
Confidence 4556666666655322 1222 44554 345556677788999999999999988762 433 22222233356
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDE 678 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (806)
..|++++|+++|+..++.+ +.|..++..-+...-.+|+.-+|++-+.+..+.-+
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------------------------- 151 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------------------------- 151 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-------------------------
Confidence 7899999999999999875 55777887777778888998899998888877642
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q 037510 679 SARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG---DINEAFNLRDEMLKINL 754 (806)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 754 (806)
.|...|.-+...|...|++++|.-.++++.- +.|... .+..+...+...| +.+-|.++|.+.++ +
T Consensus 152 -------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l 220 (289)
T KOG3060|consen 152 -------NDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--L 220 (289)
T ss_pred -------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--h
Confidence 3888999999999999999999999999998 788776 5566777766655 67779999999998 4
Q ss_pred CC
Q 037510 755 VP 756 (806)
Q Consensus 755 ~p 756 (806)
.|
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 45
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0004 Score=77.02 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHh
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNM 148 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (806)
..+..|+..+.+.+++++|..++.+.++..|+..........+... ....+......++.......++.-...+...+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q--~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLS--RRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh--hcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 4555555655566666666666555554433322221111111110 01111111113333333333443333333333
Q ss_pred hhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 149 GKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMEN 220 (806)
Q Consensus 149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 220 (806)
...+ .+..++..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... ++++|.+++.+...
T Consensus 110 ~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 110 LLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred Hhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 3321 233345555555555555555555555555544 22445555555555555 55555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-05 Score=68.01 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
......++..+...|++++|...++.+...++ .+...+..++..+.+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------------------~~~~~~~~la~~~~~~ 64 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------------------YNSRYWLGLAACCQML 64 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------------------CcHHHHHHHHHHHHHH
Confidence 44455666667777777777777777766542 2556777777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
|++++|...+++.++ ..|+. .++..++..|...|++++|+..|++.++ +.|+...
T Consensus 65 ~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 65 KEYEEAIDAYALAAA--LDPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 888888887777777 44544 4666777777778888888888877777 3454433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.4e-05 Score=63.87 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
..-.+..-+...|++++|..+|+-+.. +.|... -|..|+.+|-..|++++|+..|..+.... ..|+..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344456667788888888888888888 777764 67778888888888888888888888743 23777888888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
...|+.+.|++-|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00052 Score=68.59 Aligned_cols=140 Identities=21% Similarity=0.160 Sum_probs=106.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCH
Q 037510 411 KGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN-TITFNTMIKGLCKMGKM 489 (806)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 489 (806)
..+...|..+.|+..++.++.. .+.|........+.+.+.++..+|.+.++++.... |+ ...+-.+..+|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCCh
Confidence 3445667788888888887765 33456666677788888888888888888888763 43 56667778888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
.+|+.+++...... +.|+..|..|..+|...|+..++.....+ .+.-.|+++
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------------------~~~~~G~~~ 442 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE---------------------------GYALAGRLE 442 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH---------------------------HHHhCCCHH
Confidence 88888888887765 66788888899999998888887765543 366678888
Q ss_pred HHHHHHHHHHHC
Q 037510 570 SLVDLLAEMQTM 581 (806)
Q Consensus 570 ~a~~~~~~~~~~ 581 (806)
.|...+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 888888777765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-05 Score=73.27 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=91.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcC
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSG 772 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 772 (806)
+.-+.+.+++++|+..|.++++ +.|+. +-|..-..+|.+.|.++.|++-.+.++. +.|. ..+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 5567889999999999999999 88876 5678889999999999999999999998 6674 468999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 773 ELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
++++|.+.|++.++ +.|+..+|+.=+..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999 99999999876654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=74.03 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=96.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
.+++..+...++++.|+++++++.+.. |+. ...++..+...++-.+|.+++++.++..+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----------------- 231 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP----------------- 231 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----------------
Confidence 445555667788999999999988763 553 34577777778888899999988886532
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
.+...+..-...|.+.++++.|+.+.+++.+ ..|+.. +|..|+.+|.+.|++++|+-.++.+
T Consensus 232 ---------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 232 ---------------QDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 2556677777788899999999999999999 789886 9999999999999999999887765
Q ss_pred H
Q 037510 750 L 750 (806)
Q Consensus 750 ~ 750 (806)
-
T Consensus 295 P 295 (395)
T PF09295_consen 295 P 295 (395)
T ss_pred c
Confidence 3
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=63.20 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
|...+...|++++|+..++.... -......+..++++|.+.|++++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555555555544222 111223444555555555555555555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=63.96 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
|..++..+ ..++...+...++.+.+...... ......-.+...+...|++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~-----------------------------ya~~A~l~lA~~~~~~g~~ 64 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSP-----------------------------YAALAALQLAKAAYEQGDY 64 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCh-----------------------------HHHHHHHHHHHHHHHCCCH
Confidence 33344444 47788888888888887643210 0123444567888999999
Q ss_pred hhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
++|...|+.+.+....|+. .+...|...+...|++++|+..++..... ...+..+...+++|.+.|++++|...|+
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999996522322 25667889999999999999999774432 2245567788899999999999999998
Q ss_pred HH
Q 037510 783 KL 784 (806)
Q Consensus 783 ~m 784 (806)
+.
T Consensus 143 ~A 144 (145)
T PF09976_consen 143 KA 144 (145)
T ss_pred Hh
Confidence 64
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00015 Score=73.29 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
......++..+...++++.|..+++++.+.++ + ....++..+...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---------------------------------e--v~~~LA~v~l~~ 213 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDP---------------------------------E--VAVLLARVYLLM 213 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---------------------------------c--HHHHHHHHHHhc
Confidence 34445666777778999999999999988752 2 445578888888
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
++-.+|++++.+.++ ..|.. ..+..-+..|.+.++++.|+++.+++++ +.| +..+|..|..+|.+.|++++|+-
T Consensus 214 ~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 214 NEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred CcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999998 55644 5777778889999999999999999999 678 56699999999999999999999
Q ss_pred HHHHHHH
Q 037510 780 LFCKLRQ 786 (806)
Q Consensus 780 ~~~~m~~ 786 (806)
.++.++-
T Consensus 290 aLNs~Pm 296 (395)
T PF09295_consen 290 ALNSCPM 296 (395)
T ss_pred HHhcCcC
Confidence 9998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00041 Score=67.45 Aligned_cols=285 Identities=16% Similarity=0.095 Sum_probs=149.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 037510 446 DILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLE 525 (806)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 525 (806)
..+.+..++..|+..+...++.. +.+..-|..-...+...|++++|.--.++-.+.. +...........++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 34555666777777777777653 2334445445555666677777766665554432 112233344444455555555
Q ss_pred HHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHhHHHHHH-HHHHccCCh
Q 037510 526 EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPNIVTYGALI-SGWCDAGML 603 (806)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~l~-~~~~~~g~~ 603 (806)
+|.+.++.-. .+ ....++..++....... +|.-.+|..+- .++.-.|+.
T Consensus 135 ~A~~~~~~~~------------------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 135 EAEEKLKSKQ------------------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred HHHHHhhhhh------------------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 5554443110 00 00111111111111111 13333443332 234466777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcC
Q 037510 604 NKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSL 683 (806)
Q Consensus 604 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (806)
++|...--..++.. ..+......-..++.-.++.+.|...|++.+..+ |++......... ..
T Consensus 186 ~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~------~k--------- 247 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM------PK--------- 247 (486)
T ss_pred hhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh------HH---------
Confidence 77776666666542 1122222222334455677777777777777655 332211000000 00
Q ss_pred CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 684 CVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
-...+..-+.-..+.|++..|.+.|.+.+. +.|+.. .|.....+..+.|+..+|+.-.+++++ +.|..
T Consensus 248 ---~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy 320 (486)
T KOG0550|consen 248 ---KLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY 320 (486)
T ss_pred ---HHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH
Confidence 011233334556788888888888888887 666553 466666777788888888888888776 33321
Q ss_pred -hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 759 -ATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 759 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..|..-..++...++|++|.+.+++..+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233333455566778888888887665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-05 Score=70.98 Aligned_cols=98 Identities=27% Similarity=0.308 Sum_probs=87.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
+-+.+.+++.+|+..|.++++.++. |++.|..-..+|++.|.++.|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~--------------------------------nAVyycNRAAAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT--------------------------------NAVYYCNRAAAYSKLGEYEDAVK 136 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC--------------------------------cchHHHHHHHHHHHhcchHHHHH
Confidence 3466789999999999999987644 88899999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 710 IFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 710 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
-.+..+. +.|... +|..|+.+|...|++++|++.|+++++ +.|+-.+|-.
T Consensus 137 Dce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 137 DCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence 9999999 889875 999999999999999999999999999 8887666643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=49.50 Aligned_cols=33 Identities=39% Similarity=0.920 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=74.73 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=89.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS 771 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 771 (806)
.+..+...|++++|++.|+++++ ..|+. ..|..++.+|...|++++|+..++++++ +.| +...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 45677889999999999999999 67876 4888999999999999999999999999 456 677888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 772 GELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
|++++|...|++..+ +.|+.......+..+
T Consensus 84 g~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999999998 778877766666544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=60.58 Aligned_cols=98 Identities=22% Similarity=0.215 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATY 761 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 761 (806)
++..++..+.+.|++++|.+.|+++.+ ..|+. .++..++.++.+.|++++|++.|+++... .|+ +..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 566788889999999999999999998 44553 36778999999999999999999999984 233 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 762 NSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
..++.++.+.|+.++|.++++++.+. .|+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR--YPGS 109 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence 88889999999999999999999984 4553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.03 Score=55.76 Aligned_cols=207 Identities=15% Similarity=0.142 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHH-------HHHHHHH----hcCCHhHHHHHHHH
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN-------YLISVAF----KSRELTSLVDLLAE 577 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~~~~~~a~~~~~~ 577 (806)
.++..++....+.++...|...+..+.. ..|+...-. .+.+..+ ..-+...=+.++++
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~-----------ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI-----------LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh-----------cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4677777778888888888887776521 122221111 1122222 11122333455555
Q ss_pred HHHCCCCCCHh-HHHHHH---HHHHccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHH
Q 037510 578 MQTMGLYPNIV-TYGALI---SGWCDAGM-LNKAFKAYFDMIEKGFSPNVAICSKLV----STLCR---LGKIDEANIFL 645 (806)
Q Consensus 578 ~~~~g~~p~~~-~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~ 645 (806)
....++ |.. ....|+ .-+-+.|+ -++|+++++..++-. +-|...-+.+. ..|.. ...+.+-..+-
T Consensus 368 ~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 368 IQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555422 221 111222 22445555 788888888887631 22333222221 22221 11222222222
Q ss_pred HHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH--HHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 646 QKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG--ICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
+-+.+.|+.|-. ..+...-|.|.++ +..+|++.++.-.-.=+.+ +.|+.
T Consensus 445 ~fi~e~gl~~i~---------------------------i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~ 495 (549)
T PF07079_consen 445 DFITEVGLTPIT---------------------------ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSP 495 (549)
T ss_pred HHHHhcCCCccc---------------------------ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcH
Confidence 233334444311 1234455666554 5678899888766555555 88988
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
.+|..++-+.....++++|.+++.+ ++|+..+++.
T Consensus 496 ~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 496 QAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 8998888888888899999998887 5676665553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=58.80 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
++..++..+...|++++|...++++.+ ..|+. .++..++..+...|++++|.+.+++..+.+ ..+...+..++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 456678888999999999999999998 55655 578889999999999999999999999843 23456788888999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
...|++++|..++++..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 999999999999999876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=60.32 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
....-.+...+...|++++|.++|+-+...++. +..-|..|+.++...
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--------------------------------~~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--------------------------------SFDYWFRLGECCQAQ 82 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------------------------cHHHHHHHHHHHHHH
Confidence 334445556667788888888888877766532 566777788888888
Q ss_pred CChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++++|+..|..... +.||.. .+-.++.++...|+.+.|.+.|+.++.
T Consensus 83 g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 83 KHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred hhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888887 667664 677778888888888888888888776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.3e-05 Score=48.05 Aligned_cols=33 Identities=48% Similarity=0.929 Sum_probs=17.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 370 SFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPS 402 (806)
Q Consensus 370 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 402 (806)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0034 Score=62.02 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
++..++..+.+.|++++|.++|+++..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444555555555555555555544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=60.38 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=62.0
Q ss_pred cCChhhHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSP---DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
.|+++.|+.+++++.+ ..| +...+..++.+|.+.|++++|++++++ .+ ..| +......++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 6889999999999999 455 344666799999999999999999999 43 233 33455566899999999999
Q ss_pred HHHHHHH
Q 037510 777 AKRLFCK 783 (806)
Q Consensus 777 A~~~~~~ 783 (806)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999986
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.4e-05 Score=47.58 Aligned_cols=33 Identities=33% Similarity=0.688 Sum_probs=19.7
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
.+|+.++.+|.+.|+++.|.+++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666666555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00031 Score=63.34 Aligned_cols=98 Identities=13% Similarity=-0.026 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+...|++++|...+++++.....| .....++..++.++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------------------~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------------------YDRSYILYNIGLIHTSN 85 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------------------hhhHHHHHHHHHHHHHc
Confidence 3444555556666677777777777766543221 01233566677777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHH-------hcCCHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYA-------AVGDINEAFNLRDEML 750 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~-------~~g~~~~A~~~~~~~~ 750 (806)
|++++|+..+++..+ +.|+. .++..++..+. ..|++++|...+++..
T Consensus 86 g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 86 GEHTKALEYYFQALE--RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred CCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 777777777777776 45543 24555555555 5666665555554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00057 Score=57.56 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
++..++..+.+.|++++|.+.++++....... +.....+..++.++.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-----------------------------TYAPNAHYWLGEAYYAQGK 54 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------cccHHHHHHHHHHHHhhcc
Confidence 45566677778888888888888887654221 0123456667888888888
Q ss_pred hhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 704 VTDARRIFSALLLTGFSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
+++|...|+++.. ..|+ ..++..++.++.+.|++++|.+.++++++.
T Consensus 55 ~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 55 YADAAKAFLAVVK--KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHH--HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8888888888887 3444 246777888888888888888888888874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0055 Score=52.88 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=78.5
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
.|+...-..|..++...|+..+|...|++...--+-.|......+.++....+++.+|...++++.+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa--------- 156 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA--------- 156 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---------
Confidence 45555555666666666777777666666665444456666666666666666666666666666654311
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAF 743 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 743 (806)
...|| +.-.+...|...|++.+|...|+..+. ..|+...-......+.++|+.++|.
T Consensus 157 -------------------~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 157 -------------------FRSPD--GHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred -------------------cCCCC--chHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 11233 333355666666666666666666666 4555543333444455666555555
Q ss_pred HHHHHHHH
Q 037510 744 NLRDEMLK 751 (806)
Q Consensus 744 ~~~~~~~~ 751 (806)
.-+..+.+
T Consensus 214 aq~~~v~d 221 (251)
T COG4700 214 AQYVAVVD 221 (251)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00045 Score=70.48 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|++++|+..++++++.+.. +...|..+..+|.+.|++++|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~--------------------------------~~~a~~~~a~~~~~~g~~~eAl 56 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN--------------------------------NAELYADRAQANIKLGNFTEAV 56 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 45567889999999999999987533 6778889999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYN 762 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 762 (806)
..++++++ +.|+. ..|..++.+|...|++++|+..|+++++ +.|+.....
T Consensus 57 ~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~ 107 (356)
T PLN03088 57 ADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFT 107 (356)
T ss_pred HHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 99999999 77876 4899999999999999999999999998 566544333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00087 Score=63.25 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-Chh
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG---DINEAFNLRDEMLKINLVP-NIA 759 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 759 (806)
+.|...|..|+.+|...|+.+.|...|.+..+ +.||.. .+..++.++..+. +..++..+|+++++ ..| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHH
Confidence 34888999999999999999999999999999 777764 6667777665543 57789999999998 556 777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
....|...+...|++.+|...++.|.+ ..|....+..+|..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie~ 269 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHHH
Confidence 888888999999999999999999998 67777778777764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=70.70 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATY 761 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 761 (806)
++.+|..+.-.+...|++++|...++++++ +.|+..+|..++..|...|+.++|++.++++.. +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 345555555555555666666666666666 456555666666666666666666666666665 44543343
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=51.10 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
-|+...-..|..++.+.|+..||...|++....-+. .|....-.+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-------------------------------~d~a~lLglA~Aq 134 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-------------------------------HDAAMLLGLAQAQ 134 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-------------------------------CCHHHHHHHHHHH
Confidence 577777788999999999999999999998865332 3777888899999
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDN---FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 775 (806)
...++..+|...++++-+ ..|+. .+.-.+...|...|++..|...|+.+.+ .-|++..-......+.++|+.+
T Consensus 135 fa~~~~A~a~~tLe~l~e--~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 135 FAIQEFAAAQQTLEDLME--YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred HhhccHHHHHHHHHHHhh--cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchh
Confidence 999999999999999998 44543 2556788899999999999999999999 4566554444556688999887
Q ss_pred HHHHHHHHH
Q 037510 776 RAKRLFCKL 784 (806)
Q Consensus 776 ~A~~~~~~m 784 (806)
+|..-+..+
T Consensus 211 ea~aq~~~v 219 (251)
T COG4700 211 EANAQYVAV 219 (251)
T ss_pred HHHHHHHHH
Confidence 776654443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.002 Score=68.70 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 704 VTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
...+.+..++.......| +..+|..++-.+...|++++|...++++++ +.|+...|..++..+...|+.++|.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555554432222 345788887777888999999999999999 55888899999999999999999999999
Q ss_pred HHHHCCCCCCHhhH
Q 037510 783 KLRQKGLTPTVVTY 796 (806)
Q Consensus 783 ~m~~~g~~p~~~~~ 796 (806)
+... +.|..-+|
T Consensus 478 ~A~~--L~P~~pt~ 489 (517)
T PRK10153 478 TAFN--LRPGENTL 489 (517)
T ss_pred HHHh--cCCCCchH
Confidence 9887 66765554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0014 Score=53.90 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATYNSL 764 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 764 (806)
.-.+..++-..|+.++|+.+|++.++.|+..+. ..+-.+...+...|++++|+.++++..... |+ ......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHH
Confidence 334677888999999999999999998877654 378889999999999999999999998742 43 2233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
..++...|+.++|++++-.... ++...|+--|..|..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5688899999999999887664 445578877777653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.3e-05 Score=46.04 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=53.84 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG-DINEAFNLRDEMLK 751 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 751 (806)
++.+|..++..+...|++++|+..|++.++ +.|+.. .|..++.+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455777777778888888888888888877 567664 7777777777777 67888888877776
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.015 Score=56.94 Aligned_cols=157 Identities=9% Similarity=0.022 Sum_probs=110.2
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHHH-------------H
Q 037510 561 VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALIS--GWCDAGMLNKAFKAYFDMIEKGFSPNVAI-------------C 625 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~ 625 (806)
++.-.|+.++|.+.-....+.. ++ ..+..++. ++.-.++.+.|...|++.+.. .|+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 4555677777777666666542 11 12222333 234567788888888888765 343321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
..-.+-..+.|++.+|.+.+.+.+..++.. ..|+.-.|.....+..+.|+.+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n----------------------------~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSN----------------------------KKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccc----------------------------cchhHHHHHHhHhhhcccCCch
Confidence 122344568899999999999998766431 2467778888888999999999
Q ss_pred hHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 706 DARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
+|+.--++..+ +.|.-. .|..-+.++...++|++|.+.|+++.+.
T Consensus 305 eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 305 EAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988 656543 6767777888889999999999999874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00066 Score=54.34 Aligned_cols=93 Identities=27% Similarity=0.341 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..++..+...|++++|...++++.+.... +..++..++.++...|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 50 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD--------------------------------NADAYYNLAAAYYKLGKY 50 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc--------------------------------cHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999998876422 446778889999999999
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++|.+.+++..+ ..|+. .++..++..+...|++++|...+.+..+
T Consensus 51 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 51 EEALEDYEKALE--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHh--CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 999999999988 45655 4888999999999999999999999876
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.024 Score=55.99 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcC---CCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----Chh-HHHHHHHHHHh
Q 037510 276 HKMEEAENMLRRMKEED---DVI-VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM-----NLL-ICNSLINGYCK 345 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~ 345 (806)
|++++|++.|++..+.. +.+ .-..++..+...+.+.|++++|.++|++........ +.. .+-..+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 55555555555544320 100 012244555666777777777777777766543221 111 22233335556
Q ss_pred cCCHhHHHHHHHHHhhC
Q 037510 346 LGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 346 ~g~~~~A~~~~~~~~~~ 362 (806)
.|+...|...+++....
T Consensus 209 ~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHGTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 67777777777776644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0015 Score=59.02 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD 738 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 738 (806)
..+..++.++.+.|++++|...+++.++ ..|+.. .+..++..|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCC
Confidence 3455566666666666666666666666 445432 45555555555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=56.84 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 635 LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 635 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.|+++.|+.+++++++..... ++...+..++.+|.+.|++++|+.++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~------------------------------~~~~~~~~la~~~~~~~~y~~A~~~~~~- 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN------------------------------PNSAYLYNLAQCYFQQGKYEEAIELLQK- 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT------------------------------HHHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHHCCCC------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 578999999999998765320 1344566689999999999999999999
Q ss_pred HHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 715 LLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 715 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
.+ ..|+. .....++.+|.+.|++++|++.++++
T Consensus 51 ~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 51 LK--LDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HT--HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44 44554 35556789999999999999999874
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0033 Score=56.85 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=68.3
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 664 (806)
...+..+...+...|++++|...|++.++....+. ...+..++.++.+.|++++|...+++.++..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------- 104 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---------- 104 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------
Confidence 34566677778888999999999998886533332 467788888889999999999999988875422
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
+...+..++.++...|+...+..-+++
T Consensus 105 ----------------------~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 105 ----------------------QPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred ----------------------cHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 455666777788777776555544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00066 Score=53.28 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINL-VPNIATYNSLVSGLCNS--------GELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
..|..|...+++.....+|+.+...|+ .|+..+|+.++.+..+. +++-+.+..|++|...+++|+..+|++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334444444555555555555555555 44555555554443322 223445566666666667777777776
Q ss_pred HHHhhh
Q 037510 799 LIDGYC 804 (806)
Q Consensus 799 li~~~~ 804 (806)
+|..+-
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 666553
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.001 Score=67.69 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
.+......+++.+....+.+++..++-+..... ..--..|..+++..|.+.|..++++.+++.=...|+=||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 456677778888888888999999999888741 111223667999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
|++.+.+.|++..|.++...|..++...+..|+..-+.+|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 99999999999999999999988888888788776666553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0017 Score=51.10 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=54.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCC-CcChhhHHHHHHHHHHcCC--------hHHHHHHHHHHHHCCCCCCHhHHHH
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGC-IPSLRSCNCLLSNLVKNGE--------GYVALLVYEQMMRVGIVPDVFTCSI 197 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~A~~~~~~m~~~~~~~~~~~~~~ 197 (806)
.-|..+...+++...-.+|+.++..|+ .|++.+|+.++.+.+++.- .-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566888888888888888887 7788888888887776532 3345566777777777777777777
Q ss_pred HHHHHHh
Q 037510 198 VVNAYCK 204 (806)
Q Consensus 198 l~~~~~~ 204 (806)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7666543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=43.80 Aligned_cols=29 Identities=45% Similarity=0.948 Sum_probs=15.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=50.78 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++..+...|++++|+..|+++++ ..|+.. .+..++.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666777777777777776 446553 666677777777777777777777665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=66.20 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHH
Q 037510 295 IVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKT--GLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFN 372 (806)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 372 (806)
+.+......+++.+....+++++..++-+.... ....-+.|..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345556666666666667777777777766654 222233455577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRV 416 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 416 (806)
.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777666666666666666655554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00028 Score=52.29 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=56.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037510 722 DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG-ELDRAKRLFCKLRQ 786 (806)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 786 (806)
+..+|..++..+...|++++|+..|+++++. .| ++..+..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3467899999999999999999999999994 46 6778999999999999 79999999999887
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.11 Score=50.68 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
+.|..+.|..+-+...+.. +.-...+...+...|..|+|+.|+++.+.-
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4455666666655555442 222355556666666666666666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00025 Score=52.43 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
.+.|++++|+++|+++.+. .| +...+..++.+|.+.|++++|.++++++.. ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 3456666666666666653 33 455555666666666666666666666665 455555555444
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=43.63 Aligned_cols=29 Identities=41% Similarity=0.725 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0035 Score=61.03 Aligned_cols=272 Identities=18% Similarity=0.153 Sum_probs=148.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHH--HhcccChhhhhcCCCCCHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLM--ERREILPSMEKEAIVPSIDMY 555 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 555 (806)
-+|+.|+......+|+..++.| ..| ...|..+..+|.-.+++++|+++...- ..+..-. +. -.....
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd---kl---GEAKss 98 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD---KL---GEAKSS 98 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc---hh---cccccc
Confidence 3566666666666666666665 223 234555666666666777776654321 0000000 00 001112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHH----HHCCC-CCCHhHHHHHHHHHHccCC--------------------hHHHHHHH
Q 037510 556 NYLISVAFKSRELTSLVDLLAEM----QTMGL-YPNIVTYGALISGWCDAGM--------------------LNKAFKAY 610 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~~----~~~g~-~p~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 610 (806)
..|.+.+--.|.+++|+..-.+- .+.|- ......+-.+...|...|+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 22444444556666654432221 11110 1112234445555543332 12344444
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCC
Q 037510 611 FDMIEK----GFS-PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCV 685 (806)
Q Consensus 611 ~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (806)
.+-++. |-. .--..|..|.+.|.-.|+++.|+..-+.-+... +...+. .
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia-----------------~efGDr---------A 232 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA-----------------QEFGDR---------A 232 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH-----------------HHhhhH---------H
Confidence 432221 100 012345555666666788888876655432210 000000 0
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHH----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CC
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLL----TGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKI----N-LV 755 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~ 755 (806)
.....+..+..++.-.|+++.|.+.|+.... .|-.. ...+..+|++.|.-..++++|+.++.+=++. + ..
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1234677889999999999999999987543 22221 2236668999999999999999999885541 1 12
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 756 PNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 756 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
-....|..|..+|...|..++|+.+.+.-.+
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2456788999999999999999998877543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.22 Score=52.56 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 037510 241 GDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRV 320 (806)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 320 (806)
|++++|++++-++..+++ -|..+.+.|++-...++++.--....-..-...|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655554321 24445555565555555443211100011123455566666666666666655
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037510 321 LNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIE 400 (806)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 400 (806)
|..-.. ....++++.+..++++-+.+.+.+ +.+....-.+..++...|.-++|.+.+-+- +.
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~- 880 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL- 880 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-
Confidence 543211 112344455444444444443333 234444555556666666666665554322 11
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 401 PSVVTYNTLLKGLCRVGDVDEALHLWLM 428 (806)
Q Consensus 401 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 428 (806)
| ...+..|...++|.+|.++-++
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1234455555566666555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=61.34 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----Chhc
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP----NIAT 760 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~ 760 (806)
..|......+.+.|++++|+..|+.+++ ..|+. .++..++.+|...|++++|+..|+.+++. -| .+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 3455555555778999999999999999 66776 37889999999999999999999999973 23 2445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+..++.++...|+.++|.++++++++ ..|+....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 56677889899999999999999998 56765543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0004 Score=50.69 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
.++..+.+.|++++|+..|+++++.. | +...+..++.++...|++++|..+++++.+ ..|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 36778999999999999999999954 6 677889999999999999999999999987 56653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.04 Score=57.17 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc-H-----
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT-Y----- 761 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~----- 761 (806)
..+...+..-+.+...+.-|.++|++|-. ...++..+...++|.+|..+.++.-+ +.||... |
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 33444555555666778888888888765 23677778888999999988887665 4454421 1
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 762 -----NSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 762 -----~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
..--.+|-++|+..||..+++.+...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22235677888888888888887643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=57.82 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=54.0
Q ss_pred CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC-----------------HHHHH
Q 037510 721 PDNFTYSTLIHGYAAV-----GDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGE-----------------LDRAK 778 (806)
Q Consensus 721 p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----------------~~~A~ 778 (806)
.|..+|..++..|.+. |..+-....++.|.+.|+..|..+|+.|++++=+ |+ -+-|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHH
Confidence 4444555555555432 4555555566666666666666666666666554 22 25577
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 779 RLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 779 ~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
+++++|...|+.||..++..|++.+++
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 788888888888888888888877775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=56.29 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
+-|...|..|...|...|+.+.|..-|.+..+... +|+..+..+..++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------------------------------~n~~~~~g~aeaL 200 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--------------------------------DNPEILLGLAEAL 200 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHH
Confidence 45777888888888888888888888888877542 3566666666665
Q ss_pred HhcC---ChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 699 CKSG---NVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 699 ~~~g---~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
..+. ...++..+|+++++ ..|+++ +...|...+...|++.+|...|+.|++.
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5432 35678888888888 667665 6667778888888888888888888884
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.054 Score=51.81 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh-H---HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 037510 557 YLISVAFKSRELTSLVDLLAEMQTMGLYPNIV-T---YGALISGWCDAGMLNKAFKAYFDMIEKG 617 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 617 (806)
.....+...|++++|.+.|+++... .|+.. . .-.++.++.+.+++++|...+++.++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455667789999999999999886 34332 2 2345677889999999999999999863
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.11 Score=49.69 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=102.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 443 TLLDILFNKGDFYGAVKLWNNILARGFYKNTITF---NTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.....+...|++++|++.|+++..... -+.... -.++.++.+.+++++|...+++..+........-+.....+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344445567777777777777776531 122222 3455667777888888888887777542211222222222222
Q ss_pred h--cC---------------ChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 037510 520 K--VG---------------NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG 582 (806)
Q Consensus 520 ~--~g---------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 582 (806)
. .+ +...+.+.+ ..+..++..|-...-..+|...+..+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~---------------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF---------------------RDFSKLVRGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH---------------------HHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 1 11 111111111 12333444444445555665555555432
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 583 LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK--GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 583 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
-...-..+..-|.+.|.+..|+.-++.+++. +.+........++.+|...|..++|......+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111124455688899999999999999974 223345666778889999999999988877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.011 Score=48.78 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDF 651 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 651 (806)
..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..++++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555555555555555544332 223334445555555555555555555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0037 Score=56.31 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
...|..++..+...|++++|+..|++.+.....|. ..+|..++..|...|++++|+..+++++. +.| ...++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 44677888889999999999999999988422222 24899999999999999999999999998 345 44556677
Q ss_pred HHHHH-------hcCCHHHHHHHHHHH
Q 037510 765 VSGLC-------NSGELDRAKRLFCKL 784 (806)
Q Consensus 765 ~~~~~-------~~g~~~~A~~~~~~m 784 (806)
...+. +.|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 77777 888888666665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.005 Score=60.52 Aligned_cols=131 Identities=11% Similarity=0.138 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 037510 264 TYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 343 (806)
+|..+++..-+.+..+.|..+|.+..+......+.....+++. +...++.+.|..+|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4556666666666666666666666644223233322222222 22245555577777766654 344566666666777
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRPDS---FSFNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776654 22222 36666666666677777777777666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=57.78 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH----HCCC-CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHHH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQ----TMGL-YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK----G-FSPNVAI 624 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 624 (806)
|..|.+.|.-.|+++.|+...+.-. +-|- ......+..+.+++.-.|+++.|.+.|+..... | -......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4445555555566665554443321 1111 112345677888888889999999888876532 2 1223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
..+|.+.|.-..++++|+.++.+-+..- +...+. .-....+.+|..+|...|..
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIA-----------------qeL~Dr---------iGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIA-----------------QELEDR---------IGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHh---------hhhHHHHHHHHHHHHhhhhH
Confidence 6778888888888999988887654320 000000 01345777889999999999
Q ss_pred hhHHHHHHHHHH
Q 037510 705 TDARRIFSALLL 716 (806)
Q Consensus 705 ~~A~~~~~~~~~ 716 (806)
++|+.+.+.-++
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999888777654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.25 Score=49.16 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 037510 335 ICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLC 414 (806)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 414 (806)
+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... +-++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555666677777777766554 46777777777777777777766654332 124466777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 037510 415 RVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKL 460 (806)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (806)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 777777777666551 113455666677777666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0066 Score=59.66 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hcHHHHHHHHHhcCCHHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI---ATYNSLVSGLCNSGELDRA 777 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 777 (806)
.++.+.|..+|+...+. +..+...|...++-+...|+.+.|..+|++.+.. +.++. ..|..++.-=.+.|+++.+
T Consensus 49 ~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence 34455566666666663 2223345555666666666666666666666653 22222 2555555555566666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 778 KRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 778 ~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.++.+++.+ ..|+......+++
T Consensus 127 ~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 127 RKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHHHHHHH--HhhhhhHHHHHHH
Confidence 666666665 4455444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.002 Score=48.34 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 732 GYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.|.+.+++++|++.+++++. +.| ++..+...+.++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555554 223 334444444555555555555555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0089 Score=53.65 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=26.5
Q ss_pred CHhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 037510 191 DVFTCSIVVNAYCK-----EKSMEKALDFVKEMENLGFELNVVTYNSLIDGYV 238 (806)
Q Consensus 191 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (806)
|..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 44444445544442 2445555555666666666666666666665553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00076 Score=49.78 Aligned_cols=62 Identities=29% Similarity=0.395 Sum_probs=50.7
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
.+.|++++|++.|+++.+ ..|+. ..+..++.+|.+.|++++|.++++++.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 568999999999999999 67865 5788999999999999999999999998 45764444443
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.36 Score=48.53 Aligned_cols=454 Identities=14% Similarity=0.133 Sum_probs=222.3
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HH
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPS------LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNA--YC 203 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~--~~ 203 (806)
+.+++++.+|.++|.++.+.. ..+ ....+.++++|...+ .+..........+. .|. ..|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FGK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cCC-chHHHHHHHHHHH
Confidence 457899999999999887642 112 224567778877553 45555555555442 232 234444443 34
Q ss_pred hcCChhHHHHHHHHHHHc--CCC------------cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCChhhH
Q 037510 204 KEKSMEKALDFVKEMENL--GFE------------LNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKG----ISRTAVTY 265 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 265 (806)
+.+.+.+|.+.+..-.+. +.. +|-..-+..++++...|++.+++.+++++...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999988776544 222 123334566778889999999999988887653 33678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 037510 266 TTLTKGYCKQHKMEEAENMLRRMKEED--DVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 343 (806)
+.++-.+.+. .|-++++.. .+-|| |--++..|.+.=+.-++ -.-..+.|.......++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHH
Confidence 8766555432 233332221 12232 33344444332111111 00011223333333333333
Q ss_pred Hhc--CCHhHHHHHHHHHhhCCCCCChhc-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CcchHHHHHHHHHhc
Q 037510 344 CKL--GQVCEAKRVLRCMGDWNLRPDSFS-FNTLVDGYCRECDMTEAFRLCAEMLRQGIEP----SVVTYNTLLKGLCRV 416 (806)
Q Consensus 344 ~~~--g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~ 416 (806)
.-. .+..--.++++.....-+.|+... ...++..+.+ +.+++..+.+.+....+.+ =..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 122222333333344334454322 2223333333 4455555544443321111 134567777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 417 GDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
++...|.+.+.-+.-- .|+...-..++ -..+.+..|... |...++. ...-+.++
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kll----------ls~~~lq~Iv~~----DD~~~Tk----------lr~yL~lw 365 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLL----------LSPKVLQDIVCE----DDESYTK----------LRDYLNLW 365 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhh----------cCHHHHHHHHhc----chHHHHH----------HHHHHHHH
Confidence 8888887777766553 23322111110 011122222211 1111111 11111222
Q ss_pred HHHHHcCCCCCHH-HHHHH---HHHHHhcCC-hHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHH----HHHH---h
Q 037510 497 DKMKELGCLPNII-TYRTL---SDGYCKVGN-LEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLI----SVAF---K 564 (806)
Q Consensus 497 ~~~~~~~~~~~~~-~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~ 564 (806)
+.....++ |.. ....+ ..-+.+.|. -++|+++++.+.+ . ..-|...-|.+. ..|. .
T Consensus 366 e~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---------f-t~yD~ec~n~v~~fvKq~Y~qaLs 433 (549)
T PF07079_consen 366 EEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---------F-TNYDIECENIVFLFVKQAYKQALS 433 (549)
T ss_pred HHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------h-ccccHHHHHHHHHHHHHHHHHHHh
Confidence 22222211 110 00001 112333333 4444444444311 0 011111111111 1111 1
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCH----hHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNI----VTYGALISG--WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKI 638 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 638 (806)
...+.+-.++-+-+.+.|+.|-. ..-|.|.+| +...|++.++.-.-..+.+ +.|++.+|..++-++....++
T Consensus 434 ~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y 511 (549)
T PF07079_consen 434 MHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRY 511 (549)
T ss_pred hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhH
Confidence 22344445555556667776643 334555554 4567899888766666655 578999999999999999999
Q ss_pred HHHHHHHHHHh
Q 037510 639 DEANIFLQKMV 649 (806)
Q Consensus 639 ~~A~~~~~~~~ 649 (806)
++|..++.++.
T Consensus 512 ~eA~~~l~~LP 522 (549)
T PF07079_consen 512 QEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC
Confidence 99999998863
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.13 Score=53.56 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
+...+..-+.+...+.-|-++|.+|-+. ..+++.....++|++|..+.++..+.-... ++-.+.+..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV---y~pyaqwLAE 816 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV---YMPYAQWLAE 816 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc---cchHHHHhhh
Confidence 3333333344555566666666665432 245556666777777777766654432110 0000001110
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
.+ -+.-.-.+|-+.|+..+|..+++++..
T Consensus 817 ~D-------------------rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 ND-------------------RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hh-------------------hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 00 122233567778888888888888765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.018 Score=49.48 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=76.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSG 772 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 772 (806)
...-+...|++++|..+|+-+.. ..|-.. -|..|+.+|-..+++++|+..|..+...+ .-|+..+.....+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 44556789999999999999988 556543 56788888888999999999999998854 347788888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 037510 773 ELDRAKRLFCKLRQ 786 (806)
Q Consensus 773 ~~~~A~~~~~~m~~ 786 (806)
+.+.|+.-|+..++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999987
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.15 Score=47.03 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
+.++..+...|.+.-...++.+.++...+.++.....+++.-...|+.+.|...|++..+..-.-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--------------- 245 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--------------- 245 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh---------------
Confidence 34445555566666677777777766545566666666666667777777777777655321110
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
+...-+..+.......|.-++++.+|...+.++.+ ..|.. +.-|.-+-+..-.|+...|++..+.|
T Consensus 246 -----------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~--~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 246 -----------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR--MDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred -----------hccchhHHHHhhhhhheecccchHHHHHHHhhccc--cCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222223333445566677777777777766 33433 34444444444556777777777777
Q ss_pred HHcCCCCChhcHHHHHHHH
Q 037510 750 LKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 750 ~~~~~~p~~~~~~~l~~~~ 768 (806)
+. ..|.+.+-+.++..+
T Consensus 313 ~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 313 VQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred hc--cCCccchhhhHHHHH
Confidence 76 455555544444333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.17 Score=46.63 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH---
Q 037510 158 RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLI--- 234 (806)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 234 (806)
...+.++..+.-.|++.-....+.+..+...+.++.....+.+.-.+.|+.+.|..+|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777777787788888888777666677777777777777888888888887766443233333333332
Q ss_pred --HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 235 --DGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 235 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
..|.-.+++-.|...+++++..+. .|+..-|.-.-+..-.|+...|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455666667777766666543 24444454444444556777777777777654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0015 Score=49.75 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKI--NLV---PN-IATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+|+.++..|...|++++|++.|+++++. ... |+ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666655542 011 11 3345556666666666666666666543
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.007 Score=61.10 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
+.+...++.++.+|.+.|++++|+..|++.++ +.|+.. +|..++.+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999 789864 5999999999999999999999999984
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0036 Score=47.64 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCC---C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLT--GFSP---D-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..+++.+...|...|++++|++.|++.++. ...+ + ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 347899999999999999999999998854 1222 2 23899999999999999999999999876
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.91 Score=49.44 Aligned_cols=119 Identities=15% Similarity=0.211 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCN----CLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIV 198 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 198 (806)
.....-+..+.+...++.|+.+-..--. +..+.. .-.+.+.+.|++++|...|-+-... +.| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 3445556666666666666666554321 222222 2234445666677766666655432 222 124
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037510 199 VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWT 253 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (806)
+.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.+|.++-.++.+..
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 45555555555566666666666643 3444455666666666666655555433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0044 Score=46.45 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=53.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
...|.+.+++++|.+.++.+++ ..|+.. .|...+.++.+.|++++|.+.|++.++ ..|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence 3578899999999999999999 778775 788899999999999999999999998 4565443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=51.05 Aligned_cols=97 Identities=27% Similarity=0.433 Sum_probs=67.6
Q ss_pred HHhcCChhhHHHHHHHHHHC--C-CCCCHH------------------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 698 ICKSGNVTDARRIFSALLLT--G-FSPDNF------------------TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~--g-~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
....|+.+.+...++++... | +-|+.. +...++..+...|++++|+.++++++. +.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP 93 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA--LDP 93 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HST
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCC
Confidence 34567777777777777764 1 222211 234566677889999999999999999 567
Q ss_pred -ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHhhH
Q 037510 757 -NIATYNSLVSGLCNSGELDRAKRLFCKLR-----QKGLTPTVVTY 796 (806)
Q Consensus 757 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 796 (806)
|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 77899999999999999999999999874 34999998774
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.016 Score=55.75 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPN----VAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
+.|++++|+..|+.+++. .|+ ...+..++.+|...|++++|...|+.+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred hcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555543 122 12344444445555555555555555444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.19 Score=46.73 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC--cChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCI--PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV 186 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (806)
..+-.....+...|++.+|++.|+.+....+. -...+.-.++.++.+.|+++.|...|+++++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555667889999999999988876322 12346667788888889999999998888774
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.25 Score=45.98 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 037510 68 IKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDN 147 (806)
Q Consensus 68 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 147 (806)
.......+..+...|++.+|...|..++.. ++..+..+.+.-.++.++.+.|++++|+..|+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666778888999999999999988654 344455677788899999999999999999999
Q ss_pred hhhcCCC
Q 037510 148 MGKYGCI 154 (806)
Q Consensus 148 ~~~~~~~ 154 (806)
..+.-+.
T Consensus 68 fi~~yP~ 74 (203)
T PF13525_consen 68 FIKLYPN 74 (203)
T ss_dssp HHHH-TT
T ss_pred HHHHCCC
Confidence 8886433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.62 Score=45.86 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=84.3
Q ss_pred hcCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHH--HHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCC
Q 037510 43 KLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVH--ILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAF 120 (806)
Q Consensus 43 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 120 (806)
.+-..|..+-+.|+-.++..||+ .|-. +-...|+-..|+.+-.+.-++ ...
T Consensus 64 ~iw~sP~t~~Ryfr~rKRdrgyq-------ALStGliAagAGda~lARkmt~~~~~l--------------------lss 116 (531)
T COG3898 64 SIWESPYTARRYFRERKRDRGYQ-------ALSTGLIAAGAGDASLARKMTARASKL--------------------LSS 116 (531)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHH-------HHhhhhhhhccCchHHHHHHHHHHHhh--------------------hhc
Confidence 34567888888887776555544 3333 234566666666655443222 111
Q ss_pred CHHHHHHHHHHH--HHcCChhhHHHHHHHhhhcCCCcChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 037510 121 SPTVFDMILKIY--AQKGMLKNALHVFDNMGKYGCIPSLR--SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCS 196 (806)
Q Consensus 121 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 196 (806)
+.+-+..|+.+- .-.|++++|.+-|+.|... |... -...|.-.--+.|..+.|.+.-++.-... +.-...+.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 222222333332 2368888888888888862 2222 12223333346677777777777665532 12345666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENL 221 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~ 221 (806)
..+...|..|+++.|+++++.-...
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7777778888888888877766543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=54.51 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-ChhcHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKI-NLVP-NIATYNS 763 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~ 763 (806)
.|+.-+. +.+.|++..|...|...++. -|+.. ++-.|+.++...|++++|..+|..+.+. +-.| -+..+-.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5665554 55778899999999999994 46543 6778999999999999999999999983 2223 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
|..+..+.|+.++|..+++++.+ -.|+...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k--~YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK--RYPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--HCCCCHH
Confidence 89999999999999999999988 4666443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0094 Score=60.20 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=59.0
Q ss_pred CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 719 FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA----TYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 719 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
..|+. ..|+.++.+|.+.|++++|+..|+++++ +.|+.. +|+++..+|...|+.++|+..+++.++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34655 4899999999999999999999999999 678643 5899999999999999999999998874
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.086 Score=46.07 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATY 761 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 761 (806)
+...++..+...|++++|...++.++. ..|.. ..|..++.+|...|+..+|++.|+++.+ .|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 566678888899999999999999999 67765 5999999999999999999999999864 5899987653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.056 Score=46.60 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=62.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
..-+...|++++|..+|+-+.-.++- |..-|..|+.++...+++++|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~--------------------------------n~~Y~~GLaa~~Q~~k~y~~Ai 91 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY--------------------------------NPDYTMGLAAVCQLKKQFQKAC 91 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--------------------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778888888888877765432 5556777777777888888888
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|..... +.++. ..+-..+.+|...|+.++|...|+.+++
T Consensus 92 ~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 92 DLYAVAFT--LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHH--cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88877776 33433 2445677778888888888888887776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.2 Score=47.32 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=121.2
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037510 224 ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK-GIS--------RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDV 294 (806)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 294 (806)
.|....|..|.......-+++.|+..|-+.... |++ .+...-.+=+.+ --|++++|+++|-+|.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 466777777776666666666666666544331 111 011111122223 248899999998888665
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhc
Q 037510 295 IVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM----NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFS 370 (806)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 370 (806)
...|..+.+.|++-...++++.- |-.. -...++.+.+.+.....+++|.+.|..-...
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 23466677788887777766421 1111 2346888888888888888888888654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 037510 371 FNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN 450 (806)
Q Consensus 371 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (806)
...+.++.+..++++...+...+ +-+....-.+..++.+.|.-++|.+.|-+-.. | ...++.+..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHH
Confidence 23455565555555555544443 33556667778888888888888776644211 1 123455666
Q ss_pred cCChhHHHHHHHHH
Q 037510 451 KGDFYGAVKLWNNI 464 (806)
Q Consensus 451 ~g~~~~A~~~~~~~ 464 (806)
.++|.+|.++-+..
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.17 Score=51.64 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 603 LNKAFKAYFDMIE-KGFSPN-VAICSKLVSTLCR---------LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 603 ~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
.+.|+.+|.+++. ....|+ ...|..+..++.. .....+|.++.++..+.+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~----------------- 336 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV----------------- 336 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-----------------
Confidence 4566667777762 122343 3334333333221 22355677777777776633
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
|+.+...++.++.-.|+++.|...|++... +.||.. +|...+..+.-.|+.++|.+.+++.+
T Consensus 337 ---------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 ---------------DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred ---------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888899988999999999999999999 889985 88889999999999999999999998
Q ss_pred HcCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 751 KINLVPNI---ATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 751 ~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
+ +.|.. ....-.++.|+.. .+++|.+++-+-
T Consensus 400 r--LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 400 Q--LEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred c--cCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 8 55632 2333334467765 457888876553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.061 Score=53.19 Aligned_cols=137 Identities=20% Similarity=0.186 Sum_probs=96.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
.+.|.+.|++..|...|+++...=..- .....+..+....+ -..+++.|..+|.+.+++.+|+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~-------~~~~~ee~~~~~~~----------k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYR-------RSFDEEEQKKAEAL----------KLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhcc-------ccCCHHHHHHHHHH----------HHHHhhHHHHHHHhhhhHHHHH
Confidence 345777888888888887766420000 00001111111111 2347788889999999999999
Q ss_pred HHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR-AKRLFCKLR 785 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~ 785 (806)
+.-.+.++ +.|+++ +.---+.+|...|+++.|+..|+++++ +.| |-.+-+.|+.+-.+..+.++ ..++|..|-
T Consensus 278 ~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 278 ESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 667765 777889999999999999999999999 778 55566666666666655544 477888886
Q ss_pred H
Q 037510 786 Q 786 (806)
Q Consensus 786 ~ 786 (806)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 5
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.84 Score=45.97 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 503 (806)
.+.+.+.+++.+..-.|+.++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 456666777888888888888888888888763
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.41 Score=46.46 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=93.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFS-----PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
.++..++...+.++++++.|+.+.+.... ....++-.|...|.+..++++|..+..++.+.--.. ...|+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-----~l~d~ 200 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-----GLKDW 200 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-----CcCch
Confidence 34666777788899999999988863211 134578889999999999999998888766421000 00000
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH----CCCCCCHH-hHHHHHHHHHhcCCHH
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL----TGFSPDNF-TYSTLIHGYAAVGDIN 740 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~-~~~~l~~~~~~~g~~~ 740 (806)
... -...+...|.-++...|++..|.+.-++..+ .|-.|... ....+++.|...|+.+
T Consensus 201 ~~k-----------------yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e 263 (518)
T KOG1941|consen 201 SLK-----------------YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLE 263 (518)
T ss_pred hHH-----------------HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHh
Confidence 000 0112334456678888999888888877654 34334332 5678899999999999
Q ss_pred HHHHHHHHHHH
Q 037510 741 EAFNLRDEMLK 751 (806)
Q Consensus 741 ~A~~~~~~~~~ 751 (806)
.|+.-|+.+..
T Consensus 264 ~af~rYe~Am~ 274 (518)
T KOG1941|consen 264 RAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHH
Confidence 99998888654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.91 Score=45.71 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=93.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 592 ALISGWCDAGMLNKAFKAYFDMIEKG---FSPNVAICSKLVSTLCR---LGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 592 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
.++-+|....+++.-+++.+.+.... +.....+-...+-++.+ .|+.++|+.++..+......
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~----------- 214 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN----------- 214 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-----------
Confidence 44445777777777777777776531 11122233344555666 77888888887775443222
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH----h-----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC----K-----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~-----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 736 (806)
+++.+|..++..|. . ....++|+..|.+.-+ +.||..+=-.++..+...
T Consensus 215 --------------------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 215 --------------------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLA 272 (374)
T ss_pred --------------------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHc
Confidence 24445555555442 1 1236778888887777 557665322333333333
Q ss_pred CCHH----HHHHHH---HH-HHHcCCCC---ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 737 GDIN----EAFNLR---DE-MLKINLVP---NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 737 g~~~----~A~~~~---~~-~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
|... +..++- .. ..+.|... |.-.+.++..+..-.|+.++|.+..++|.+ ..|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcch
Confidence 3222 222222 11 11233322 344456777778888899999999999887 345443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.28 Score=52.25 Aligned_cols=163 Identities=18% Similarity=0.093 Sum_probs=110.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhh
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV------AICSKLVSTLCR----LGKIDEANIFLQKMVDFDFVPDLKY 659 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 659 (806)
+..++....=.|+-+.+++.+.+..+.+---.+ ..|..++..++. ....+.|.++++.+.+.-
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y------- 263 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY------- 263 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------
Confidence 445566666778888888888887763211111 123333333332 456788889998888763
Q ss_pred hhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHH-HHHHHHhcCChhhHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHh
Q 037510 660 MASSAINVDAQKIAMSLDESARSLCVPNYVVYNI-VIAGICKSGNVTDARRIFSALLLTG-FSP--DNFTYSTLIHGYAA 735 (806)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~ 735 (806)
|+...|.. -+..+...|++++|++.|++..... .-| ....+--+++.+.-
T Consensus 264 --------------------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 264 --------------------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred --------------------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 45555543 4567788999999999999876521 111 22366788899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIATYNSLV-SGLCNSGEL-------DRAKRLFCKLRQ 786 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~ 786 (806)
.++|++|.+.|.++.+.+ .-+..+|..+. .++...|+. ++|.+++.+++.
T Consensus 318 ~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999999853 33455554444 456678888 899999988753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.9 Score=43.48 Aligned_cols=148 Identities=15% Similarity=0.210 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMG-LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC-SKLVST 631 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~ 631 (806)
+|-.+++...+...++.|..+|-++.+.| +.+++..+++++.-++ .|+...|.++|+--+.+ -||...| ...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 44456667777888999999999999988 5677888888888665 58889999999877765 3444433 455666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+.+.++-+.|..+|+..+.+--.. .-..+|..+|.--..-|++..+..+=
T Consensus 476 Li~inde~naraLFetsv~r~~~~------------------------------q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKT------------------------------QLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHh------------------------------hhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 778899999999999766431000 01237888998888999999999988
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhc
Q 037510 712 SALLLTGFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 712 ~~~~~~g~~p~~~~~~~l~~~~~~~ 736 (806)
+.|.+ .-|...+-......|.-.
T Consensus 526 ~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 526 ERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHH--HcCcHhHHHHHHHHHhhh
Confidence 88888 667665544444445443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.07 Score=43.25 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCh--hcHHHHHHHHHh
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI-NLVPNI--ATYNSLVSGLCN 770 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~~l~~~~~~ 770 (806)
.-++...|+++.|++.|.+.+. +.|.. .+||.-..++.-+|+.++|++-++++++. |-+... ..|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4467899999999999999999 77765 58999999999999999999999999983 322111 233344456788
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 037510 771 SGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~g~~ 790 (806)
.|+.+.|..-|+..-+.|.+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 89999999988887665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=3.1 Score=45.59 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=35.8
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALD 213 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 213 (806)
++|++++|...|-+.+..- .| ..++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.+
T Consensus 380 ~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred hcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 4555555555555444320 11 12233344444444455555555555543 33333445555555555555544
Q ss_pred HHHHH
Q 037510 214 FVKEM 218 (806)
Q Consensus 214 ~~~~~ 218 (806)
+.+..
T Consensus 453 fI~~~ 457 (933)
T KOG2114|consen 453 FISKC 457 (933)
T ss_pred HHhcC
Confidence 44443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=3.1 Score=44.98 Aligned_cols=334 Identities=16% Similarity=0.115 Sum_probs=167.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD---LNGAKRVLEWTCEKGISRTAVTYTTLTKGYC 273 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 273 (806)
.++.-+...+.+..|+++-.-+...-..- ..+|.....-+.+..+ .+-+..+-+++... . ....+|..+.+--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 35566667777777777766664321111 3455555555555432 12222222222221 1 34456777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 274 KQHKMEEAENMLRRMKEEDDVIV---DEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 274 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
..|+.+-|..+++.=.......| +..-+...+.-+...|+.+-...++-.+...- +...+.. ...+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhch
Confidence 78888888777654322210000 11122333333444444444444444443320 1111111 112333
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH--HHHHC-CCCCCcchHHHHHHHHHhcCCHHHH-----
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA--EMLRQ-GIEPSVVTYNTLLKGLCRVGDVDEA----- 422 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a----- 422 (806)
.|..+|.+..+.. |.. .+-+.| +.++-..+...|. ...+. -+.+-........+.+.+.....-.
T Consensus 590 ~a~~lY~~~~r~~---~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhh---chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 4445554433311 100 011112 2222222222111 10000 0112222233444555554432211
Q ss_pred -----HHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 423 -----LHLWLMMLK-RCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 423 -----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
+.+.+.+.. .|......+.+--+.-+...|+...|.++-.+.. -||-..|-.-+.+++..++|++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 122222221 1222333445555666677888999988877765 478888888899999999999877766
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLA 576 (806)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
+... .+.-|..++.+|.+.|+.++|.+++.+. .+ +...+.+|.+.|++.+|.++--
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv-----------~~-------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV-----------GG-------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhcc-----------CC-------hHHHHHHHHHhccHHHHHHHHH
Confidence 5443 2456788899999999999999988755 11 1145667777888777776543
Q ss_pred H
Q 037510 577 E 577 (806)
Q Consensus 577 ~ 577 (806)
+
T Consensus 795 ~ 795 (829)
T KOG2280|consen 795 E 795 (829)
T ss_pred H
Confidence 3
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.18 Score=42.18 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
|..++..++.++++.|+.+....+++....-+........ . -...+...|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~--------------~--~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG--------------D--YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC--------------c--cCCCCCCCCCHHHHHHHHHHHHh
Confidence 4566778888888888888888888776644322110000 0 01123345888899999999999
Q ss_pred cCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhc
Q 037510 701 SGNVTDARRIFSALLLT-GFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~ 736 (806)
.|++..|.++.+...+. +++-+..+|..|+.-+...
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999888876 6555667888777655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.091 Score=52.05 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=86.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHC-----CCCCC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 694 VIAGICKSGNVTDARRIFSALLLT-----GFSPD---------NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
-+..|.+.|++..|...|+++... +..+. ..++..|..+|.+.+++.+|++...+.+... .+|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 466889999999999999987642 12221 2267889999999999999999999999943 34777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
...-=+.+|...|+++.|+..|+++++ +.|+....+.=|..|
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 777888999999999999999999999 899887766555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.4 Score=40.58 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=104.5
Q ss_pred CCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHH
Q 037510 63 KFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNAL 142 (806)
Q Consensus 63 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 142 (806)
.+..-...|..-+..+-.+++|+.|...|.+.++-...+... | -...-++.|.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---f------------------------hAAKayEqaa 78 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---F------------------------HAAKAYEQAA 78 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---H------------------------HHHHHHHHHH
Confidence 444445678888889999999999998887776432222111 1 1122234444
Q ss_pred HHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHh--HHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 143 HVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV--GIVPDVF--TCSIVVNAYCKEKSMEKALDFVKEM 218 (806)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 218 (806)
-+.+++.+.. --+..++--...|..+|.++-|-..+++.-+. ++.|+.. .|..-+..+...++...|.++
T Consensus 79 mLake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---- 152 (308)
T KOG1585|consen 79 MLAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---- 152 (308)
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH----
Confidence 4444444421 01223444455667777776666666654331 2333221 122222222222222223222
Q ss_pred HHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037510 219 ENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKG----ISRT-AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDD 293 (806)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 293 (806)
+......+.+...+++|-..|.+-.... --++ -..|...|-.|.-..++..|...++.--+.++
T Consensus 153 -----------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 153 -----------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred -----------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 3333445555566666555444322110 0011 12344555556666777777777776444322
Q ss_pred C--CCChHhHHHHHHHHHhcCChHHHHHHH
Q 037510 294 V--IVDEYAYGVLIDGYCKVGKVDEAIRVL 321 (806)
Q Consensus 294 ~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (806)
+ +.+..+...|+.+| ..|+.+++..++
T Consensus 222 f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred ccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 2 22344566666655 445666555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.3 Score=42.48 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 037510 370 SFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILF 449 (806)
Q Consensus 370 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (806)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-++..|..++..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445555666666666666554442 35666667777777777777665554321 123456666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 450 NKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
+.|+..+|..+...+. +..-+..|.+.|.+.+|.+..
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 6676666666655411 134455566666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.4 Score=46.55 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHH----HHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH-cCCCC---CHH
Q 037510 553 DMYNYLISVAFKSRELTSLVDLL----AEMQTMG-LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIE-KGFSP---NVA 623 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~ 623 (806)
.++..+..+.++.|.+++++..- +-..+.. -.---..|..+..++.+..++.+++.+-..-.. .|..| ...
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 45566677777777777665432 1111110 000123455556666666666666665554443 22223 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
....+..+....+.++++++.|+.+.+.-...+ .......++-.|...|....+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--------------------------D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNND--------------------------DAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--------------------------CceeeeehhhhHHHHHHHHHh
Confidence 334566777778889999999998876421111 001123467788899999999
Q ss_pred hhhHHHHHHHHHHC--CCCCCH--H-----hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-ChhcHHHHHHHHH
Q 037510 704 VTDARRIFSALLLT--GFSPDN--F-----TYSTLIHGYAAVGDINEAFNLRDEMLK----INLVP-NIATYNSLVSGLC 769 (806)
Q Consensus 704 ~~~A~~~~~~~~~~--g~~p~~--~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~ 769 (806)
+++|..+..+..+. .+..+. . +...|.-++...|..-.|.+..+++.+ .|-.+ -......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 99998888777652 122111 1 334566688889999999999988876 34333 2334567889999
Q ss_pred hcCCHHHHHHHHHHH
Q 037510 770 NSGELDRAKRLFCKL 784 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m 784 (806)
..|+.|.|..-|+..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 999999998888774
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.4 Score=43.66 Aligned_cols=184 Identities=13% Similarity=0.045 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 037510 507 NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 586 (806)
+..+|..-++--...|+.+...-+++... .....-...|-..+.-....|+.+-|..++....+--++-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercl----------i~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCL----------IPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHH----------hHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 34677777777788888888888887661 11112223344444445555888777777766554322222
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHhhCCCCCChhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA-ICSKLVSTLCRLGKIDEAN---IFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~ 662 (806)
+.+-..-.......|++..|..+++...+. . |+.. .-..-+....+.|..+.+. .++........
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--------- 434 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--------- 434 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc---------
Confidence 222111112234678999999999998876 3 5433 2233355566788888877 33333332211
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH-----HHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA-----GICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAV 736 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 736 (806)
+..+...+.- .+.-.++.+.|..++.++.+ +.|+. ..|..++..+...
T Consensus 435 ------------------------~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 435 ------------------------NNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred ------------------------CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhC
Confidence 1112222221 23445788999999999998 55554 5788888877666
Q ss_pred C
Q 037510 737 G 737 (806)
Q Consensus 737 g 737 (806)
+
T Consensus 489 ~ 489 (577)
T KOG1258|consen 489 P 489 (577)
T ss_pred C
Confidence 5
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.39 Score=40.56 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
....+.|++++|.+.|+.+...-+.+. -...+.-.|+.+|.+.|++++|..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~-----------------------------ya~qAqL~l~yayy~~~~y~~A~a 68 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGE-----------------------------YAEQAQLDLAYAYYKQGDYEEAIA 68 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCc-----------------------------ccHHHHHHHHHHHHHccCHHHHHH
Confidence 334466777777777777766543321 122344456777777777777777
Q ss_pred HHHHHHHCCCCCCH
Q 037510 710 IFSALLLTGFSPDN 723 (806)
Q Consensus 710 ~~~~~~~~g~~p~~ 723 (806)
.+++.++ +.|++
T Consensus 69 ~~~rFir--LhP~h 80 (142)
T PF13512_consen 69 AYDRFIR--LHPTH 80 (142)
T ss_pred HHHHHHH--hCCCC
Confidence 7777777 56655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.16 Score=41.25 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
-++...|+.+.|++.|.+.+..-+ .++..||.-..++.-+|+.++|++
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P--------------------------------~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP--------------------------------ERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc--------------------------------cchHhhccHHHHHHHcCChHHHHH
Confidence 356788999999999999887532 367799999999999999999999
Q ss_pred HHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 710 IFSALLLTGFSPDN---FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 710 ~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
-+++.++..-.-.. .+|..-+..|...|+-+.|..-|+.+.+.|
T Consensus 99 DLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 99 DLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 99999985111122 267777778899999999999999998866
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.8 Score=42.38 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..|-..++...+..-++.|.++|-++.+.++.. ++..++++++.-++ .|
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~------------------------------h~vyi~~A~~E~~~-~~ 446 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG------------------------------HHVYIYCAFIEYYA-TG 446 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC------------------------------cceeeeHHHHHHHh-cC
Confidence 344555666667777888888888888776432 46667777776554 56
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPDNFTY-STLIHGYAAVGDINEAFNLRDEMLKINLVPN--IATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
+..-|..+|+--.. .-||...| +-.+.-+...++-+.|..+|+..+.. +..+ ..+|..+|.-=..-|++.-+..
T Consensus 447 d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 447 DRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred CcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 77788888877666 45666543 34455566778888888888866652 2222 3567777777777788888877
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHh
Q 037510 780 LFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 780 ~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
+=++|.+ +.|-..+.......
T Consensus 524 Le~rf~e--~~pQen~~evF~Sr 544 (660)
T COG5107 524 LEERFRE--LVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHH--HcCcHhHHHHHHHH
Confidence 7777766 55655444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.3 Score=40.71 Aligned_cols=198 Identities=19% Similarity=0.120 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTM-GLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS-TL 632 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~ 632 (806)
+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333444444444444444444444321 112233334444444445555556666665555432222 111111222 45
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
...|+++.|...+++........ ......+......+...++.++|...+.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 141 YELGDYEEALELYEKALELDPEL-----------------------------NELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCc-----------------------------cchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 56666666666666654321100 0011222223333555666666666666
Q ss_pred HHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 713 ALLLTGFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 713 ~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+ ..|+ ...+..+...+...+++++|...+..... ..|+ ...+..+...+...|..+++...+.+..+
T Consensus 192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666 3344 34566666666666666666666666666 2333 33344444444455566666666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.16 Score=42.35 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037510 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEK---------------GISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED 292 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 292 (806)
.++.++|.++++.|+++....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555555555555555554433211 122344444444444444444444444444444444
Q ss_pred CCCCChHhHHHHHH
Q 037510 293 DVIVDEYAYGVLID 306 (806)
Q Consensus 293 ~~~~~~~~~~~li~ 306 (806)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2 Score=41.09 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 167 LVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEM 218 (806)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 218 (806)
....|++.+|...|......... +...-..++.+|...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555555553221 2333444555555555555555555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.1 Score=41.00 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=97.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 037510 199 VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKM 278 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (806)
.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..++...-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567889999999999888764 3345667778889999999999999999887653222222222334555555555
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHhHH
Q 037510 279 EEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL-EMNLLICNSLINGYCKLGQVCEA 352 (806)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 352 (806)
.+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+++++. .-|...-..|+..+.--|..+.+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 5555555555433 22566666777788888888888877776665421 22555666677666666644433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.28 E-value=3.4 Score=47.27 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.|.-.++.--+.|.+.+|+.++..=.+ .-...|.+....+...+.+++|.-.|+..-+. .-.+.+|.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 344444555566667777666532111 12234555556666667777777666655321 23356677
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 599 (806)
..|+|.+|+.+...+. .+...-..+-..|+..+...+++-+|-++..+.... ..-.+..|++
T Consensus 977 ~~~dWr~~l~~a~ql~----------~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~k 1038 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLS----------EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCK 1038 (1265)
T ss_pred HhccHHHHHHHHHhhc----------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhh
Confidence 7788888777766541 110011112245666677777777777777665542 1223444566
Q ss_pred cCChHHHHHHHHH
Q 037510 600 AGMLNKAFKAYFD 612 (806)
Q Consensus 600 ~g~~~~A~~~~~~ 612 (806)
...+++|+++-..
T Consensus 1039 a~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1039 AKEWEEALRVASK 1051 (1265)
T ss_pred HhHHHHHHHHHHh
Confidence 6666666655443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.5 Score=39.06 Aligned_cols=201 Identities=18% Similarity=0.092 Sum_probs=105.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 037510 163 LLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242 (806)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (806)
-..+|...+++++|...+.+..+. ..-+...| .....++.|.-+.+++.+. +.-+..|+-...+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCC
Confidence 344555566677666666555431 11122111 1223345566666666543 2234456666777888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCChHhHHHHHHHHHhcCChHHHH
Q 037510 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE----DDVIVDEYAYGVLIDGYCKVGKVDEAI 318 (806)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~ 318 (806)
.+.|-..+++..+. ...-++++|+++|.+.... +....-...+..+-..+.+...+++|-
T Consensus 107 pdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 107 PDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred cchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 88777777765541 2334556666666654432 001111223444555666666776665
Q ss_pred HHHHHHHHC----CCCCCh-hHHHHHHHHHHhcCCHhHHHHHHHHHhhCC---CCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 319 RVLNEMLKT----GLEMNL-LICNSLINGYCKLGQVCEAKRVLRCMGDWN---LRPDSFSFNTLVDGYCRECDMTEAFRL 390 (806)
Q Consensus 319 ~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~ 390 (806)
..+.+-... .--++. ..|.+.|-.|.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 554432211 111121 235555556666778888888887743321 233556666677665 34565555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.49 Score=39.97 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hcHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI--ATYNS 763 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ 763 (806)
.+-.-+....+.|++++|++.|+.+... -|-. .+--.|+.+|.+.|++++|+..+++.++. .|+. ..|-.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~ 87 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHH
Confidence 3334455667899999999999999985 3322 36778999999999999999999999994 4532 33443
Q ss_pred HHHH--HHhcCC---------------HHHHHHHHHHHHHCCCCCCH
Q 037510 764 LVSG--LCNSGE---------------LDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 764 l~~~--~~~~g~---------------~~~A~~~~~~m~~~g~~p~~ 793 (806)
...+ +.+... ..+|..-|+++++ .-|+.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~--~yP~S 132 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR--RYPNS 132 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH--HCcCC
Confidence 4444 334333 6778888888876 45553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.47 Score=45.60 Aligned_cols=49 Identities=6% Similarity=-0.124 Sum_probs=20.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 614 (806)
.|+..+|...++++.+. .+.|...+.-.=++|.-.|+...-...+++.+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 34444444444444432 22233334434444444444444444444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.18 E-value=6.8 Score=43.77 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=108.0
Q ss_pred HHHHHHHhhhhCCCCCC--CHhHHHHHHHHHH-cCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHH
Q 037510 50 ASLGFFQLASKQQKFRP--NIKCYCKIVHILS-RARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFD 126 (806)
Q Consensus 50 ~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (806)
.|++-+.-+.++...+| ...++..++++|. ...++++|+..+...+..+..+.-.... -....
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k--------------~~~~~ 104 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK--------------FRCQF 104 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH--------------HHHHH
Confidence 34555555554444444 3567888999988 7899999999999887765432111000 11223
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCCC--cCh--hhHHHH-HHHHHHcCChHHHHHHHHHHHHCC---CCCCHhHHHHH
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGCI--PSL--RSCNCL-LSNLVKNGEGYVALLVYEQMMRVG---IVPDVFTCSIV 198 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~l 198 (806)
.+++.+.+.+... |...+++.++.--. .+. ..+..+ +..+...+++..|.+.++.+...- ..|-...+..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 4566676666655 88888887654111 111 122223 222333478888998888876642 22333444444
Q ss_pred HHHHH--hcCChhHHHHHHHHHHHcCC---------CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 037510 199 VNAYC--KEKSMEKALDFVKEMENLGF---------ELNVVTYNSLIDGYV--SLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 199 ~~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 255 (806)
+.+.. +.+..+++.+.++++..... .|...++..+++.++ ..|+++.+...++++.+
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44433 45556677777766633211 234555666665543 56776676666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.33 Score=45.72 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC
Q 037510 75 VHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCI 154 (806)
Q Consensus 75 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (806)
+--+..+|++.+|...|...++. |+.....+..+-.|..++...|++++|..+|..+.+.-++
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~-----------------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKK-----------------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----------------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 33334555566666665554432 3444555666666666666666666666666666554211
Q ss_pred --cChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037510 155 --PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV 186 (806)
Q Consensus 155 --~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (806)
--+.++--|..+..+.|+.++|..+|+++.+.
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12344555555555666666666666665553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.6 Score=47.77 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=71.4
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
....+|.++.++..+ +.|+. .+...++.+..-.|+++.|...|+++.. +.|| ..+|....+.+.-.|+.++|.+
T Consensus 318 ~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 318 LAAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 345678888888888 66755 5888888888888999999999999999 6675 4577778888889999999999
Q ss_pred HHHHHHHCCCCCCHh
Q 037510 780 LFCKLRQKGLTPTVV 794 (806)
Q Consensus 780 ~~~~m~~~g~~p~~~ 794 (806)
.+++..+ ..|-..
T Consensus 394 ~i~~alr--LsP~~~ 406 (458)
T PRK11906 394 CIDKSLQ--LEPRRR 406 (458)
T ss_pred HHHHHhc--cCchhh
Confidence 9999776 667643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.54 Score=49.23 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=100.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 560 SVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
....-.++++++.++...-.-.. ..+....+.++.-+.+.|..+.|+++-.. +. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 34445778888766664111110 11234467777778888999888876432 22 1233455788988
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
.|.++.++. ++...|..|+....++|+++-|.+.|++...
T Consensus 336 ~A~~~a~~~-------------------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--- 375 (443)
T PF04053_consen 336 IALEIAKEL-------------------------------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--- 375 (443)
T ss_dssp HHHHHCCCC-------------------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----
T ss_pred HHHHHHHhc-------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---
Confidence 888776543 3567999999999999999999999998766
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
|..|.-.|.-.|+.+.-.++.+.+...| -++....++.-.|+.++..+++.+
T Consensus 376 ------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 ------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6778888899999888777777777655 234444555566777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.073 Score=34.78 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTL 729 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 729 (806)
++..+...|...|++++|+++|+++++ ..|+.. .|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHh
Confidence 455666666777777777777777666 556553 44333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.6 Score=42.45 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
+-..+..++-+.|+.++|++.++++.+..+.. .+..+...|+.++...+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------------------~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------------------DNLNIRENLIEALLELQA 310 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------------------chhhHHHHHHHHHHhcCC
Confidence 33456777778999999999999998754221 134467789999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc
Q 037510 704 VTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGD---------------INEAFNLRDEMLKI 752 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~ 752 (806)
+.++..++.+.-+. ..|... .|+..+--+...|+ -..|.+.+.++++.
T Consensus 311 Yad~q~lL~kYdDi-~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 311 YADVQALLAKYDDI-SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 99999999987552 235554 56654433333333 13466778887773
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.087 Score=34.41 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCL 163 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 163 (806)
+++..+.+.|.+.|++++|+++|++..+..+. |...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45556677777777777777777777776542 55555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.19 Score=46.82 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----------------CHHHHHHH
Q 037510 687 NYVVYNIVIAGICKS-----GNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG----------------DINEAFNL 745 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~A~~~ 745 (806)
|-.+|-..+..+... +..+--...++.|.+.|..-|..+|+.|++.+=+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 344454444444322 334444455555556566666666666665543321 11235555
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037510 746 RDEMLKINLVPNIATYNSLVSGLCNSGE 773 (806)
Q Consensus 746 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 773 (806)
+++|...|+.||..+-..|+.++.+.|.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 5555555555555555555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.58 Score=42.09 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHH--H
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYN--S 763 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~ 763 (806)
..+..++..|++.|+.++|.+.|.++.+....|... .+-.++......|+|..+.....++...--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 468889999999999999999999999976666654 67889999999999999999999887631121 222111 1
Q ss_pred HH--HHHHhcCCHHHHHHHHHHHH
Q 037510 764 LV--SGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 764 l~--~~~~~~g~~~~A~~~~~~m~ 785 (806)
.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 23456789999999887765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.56 E-value=7.5 Score=41.22 Aligned_cols=181 Identities=15% Similarity=0.043 Sum_probs=98.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 037510 403 VVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKG 482 (806)
Q Consensus 403 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 482 (806)
..+|..-+.--...|+.+.+.-+|++..-- +..=...|-..+......|+.+-|..++....+--.+..+.+--.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456777777777788888888887776543 1122334455555555568777777776665554332222222112222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHH---HHHHHHhcccChhhhhcCCCCCHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNI-ITYRTLSDGYCKVGNLEEAFK---IKNLMERREILPSMEKEAIVPSIDMYNYL 558 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 558 (806)
.-..|+++.|..+++...+.- |+. ..-..-+..-.+.|+.+.+.. ++... ... ..+..+...+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~---------~~~--~~~~~i~~~l 442 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSI---------YEG--KENNGILEKL 442 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh---------ccc--ccCcchhHHH
Confidence 334578999999998887763 443 333333455667777777763 33322 111 1111111111
Q ss_pred HH-----HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 559 IS-----VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC 598 (806)
Q Consensus 559 ~~-----~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 598 (806)
.. .+.-.++.+.|..++.++.+. .+++...|..++....
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 11 223356677777777777765 3445555666655444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.53 E-value=2.7 Score=43.37 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 037510 163 LLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242 (806)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (806)
++.-.-+..+.+.-++.-.+.++ +.||..+..+++ +--......+|.+++++..+.|-. . +.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhh
Confidence 33334445555555555555555 345543322222 112234467777777776654310 0 000000
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 037510 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLN 322 (806)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (806)
....-..++.+..+...+-..+-..+..+.-+.|+.++|++.+++|.+.............|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000111222222221223333445666667788888888887777652222233456677777777777777777777
Q ss_pred HHHHC
Q 037510 323 EMLKT 327 (806)
Q Consensus 323 ~~~~~ 327 (806)
+..+.
T Consensus 320 kYdDi 324 (539)
T PF04184_consen 320 KYDDI 324 (539)
T ss_pred Hhccc
Confidence 76543
|
The molecular function of this protein is uncertain. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.039 Score=33.48 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=20.5
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAF 743 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 743 (806)
|++.++ +.|+.. +|+.|+..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555 566654 7777777777777777765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.5 Score=42.41 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 381 ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK 431 (806)
Q Consensus 381 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 431 (806)
+|+..+|...++++++. .+.|...+...=.+|...|+.+.-...+++++.
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 45555555555555554 233445555555555555555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.2 Score=35.09 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=69.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037510 203 CKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 203 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (806)
.-.|..++..+++.+.... .+..-||-+|--....-+-+-..++++.+-+. -|.. .+|+.....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence 3456677777777776653 24444555554444444444444444444331 1211 223333333
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037510 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (806)
..+-.+- .+.......+..+...|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-+.
T Consensus 77 ~C~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 77 ECYAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3332221 12334455566677777777777777777653 3556777777777777777777777777777666
Q ss_pred CC
Q 037510 363 NL 364 (806)
Q Consensus 363 ~~ 364 (806)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 63
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.6 Score=36.61 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH-HHHH-
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPS-LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT-CSIV- 198 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~l- 198 (806)
.+.|..-+. +++.++.++|+..|..+.+.|...- +-+.-.+.....+.|+...|...|+++-.....|-..- ...+
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344443333 3567788888888888877654321 12333445566677888888888888766544443221 1111
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037510 199 -VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 199 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (806)
.-.+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 112345566666666666555444333344445555555666666666666666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.3 Score=36.02 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=93.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...++.++|+.-|..+.+.|.... | .-...-........|+...|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~Y-----------------------------p-vLA~mr~at~~a~kgdta~AV~aF 117 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSY-----------------------------P-VLARMRAATLLAQKGDTAAAVAAF 117 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcc-----------------------------h-HHHHHHHHHHHhhcccHHHHHHHH
Confidence 4567889999999999988765421 1 111222345567889999999999
Q ss_pred HHHHHCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 712 SALLLTGFSPDNF---TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 712 ~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
+++-.-...|... .----...+...|-++......+-+...+-.-....-..|.-+-.+.|++..|.++|..+..-.
T Consensus 118 deia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 118 DEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 9998855455443 2223344567788888888777766544322244555788888899999999999999988765
Q ss_pred CCCCHhh
Q 037510 789 LTPTVVT 795 (806)
Q Consensus 789 ~~p~~~~ 795 (806)
..|....
T Consensus 198 ~aprnir 204 (221)
T COG4649 198 QAPRNIR 204 (221)
T ss_pred cCcHHHH
Confidence 6665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.1 Score=32.26 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777777777777543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=5 Score=37.74 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLL---ICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
..-|.+.|.+..|..-+++|++. .+-... .+-.+..+|...|-.++|...-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34556666666666666666665 222222 233344556666666666555444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.8 Score=34.60 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
......++.+...|.-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.++++++-+.|..
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445566777888888888888887763 3778888888889999999999999999988888753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.91 Score=42.59 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 037510 246 AKRVLEWTCEKGISRTAVTYTTLTKGYCKQH 276 (806)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (806)
+.+++++|..+|+.||-.+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4455555555555555555555555554444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.4 Score=46.15 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHH
Q 037510 475 TFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDM 554 (806)
Q Consensus 475 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (806)
..+.++..+.+.|..+.|+.+..+ +.+ -.+...+.|+.+.|.++.+. .++...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~a~~---------------~~~~~~ 349 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEIAKE---------------LDDPEK 349 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCC---------------CSTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHHHHh---------------cCcHHH
Confidence 355666666666666666655432 211 13344566666666654321 235556
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
|..|.....+.|+++-|++.|++... +..|+-.|.-.|+.+.-.++.+.....| . ++....++.-
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~ 414 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALL 414 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHH
Confidence 66666666667777666666665442 3444445556666666555555555443 1 2333344445
Q ss_pred cCCHHHHHHHHHH
Q 037510 635 LGKIDEANIFLQK 647 (806)
Q Consensus 635 ~g~~~~A~~~~~~ 647 (806)
.|+.++...++.+
T Consensus 415 lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 415 LGDVEECVDLLIE 427 (443)
T ss_dssp HT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 5666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.5 Score=39.90 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhh
Q 037510 603 LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR--L----GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSL 676 (806)
Q Consensus 603 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 676 (806)
+++.+.+++.+.+.|+.-+..+|.+..-.... . .....|..+++.|.+.++--+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 44567788888888888887666553333322 2 235678899999998764321
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHhcCC----hhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC--HHHHHHHHHH
Q 037510 677 DESARSLCVPNYVVYNIVIAGICKSGN----VTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGD--INEAFNLRDE 748 (806)
Q Consensus 677 ~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~ 748 (806)
.++-.++..++.. ..++ .+.+...|+.+.+.|+..+.. ....++..+..... ..++.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2334444444433 2222 466788888888888888764 33333333322222 4578889999
Q ss_pred HHHcCCCCChhcHHHHHH
Q 037510 749 MLKINLVPNIATYNSLVS 766 (806)
Q Consensus 749 ~~~~~~~p~~~~~~~l~~ 766 (806)
+.+.|+++....|..++-
T Consensus 208 l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHcCCccccccccHHHH
Confidence 999999988877877664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.6 Score=36.59 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=96.4
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHH
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKA 211 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 211 (806)
|-..|-+.-|+--|.+.....++ -+.++|.|.--+...|+++.|.+.|+...+..+.-+-...|.-| ++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhh
Confidence 33445555666666665554322 45678888888888899999999999887755333322233222 23356888888
Q ss_pred HHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 212 LDFVKEMENLGF-ELNVVTYNSLIDGYVSLGDLNGAKRVL-EWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMK 289 (806)
Q Consensus 212 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (806)
.+-+...-+.+. .|-...|.-++ -..-+..+|..-+ ++... .|..-|..-|-.|.- |++. ...+++++.
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 777766665532 12122222222 2333455555433 33333 344445444433321 1111 112333333
Q ss_pred hcCCCCCC-------hHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 290 EEDDVIVD-------EYAYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 290 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
.. ...+ ..||.-+...+...|++++|..+|+-.+..
T Consensus 224 a~--a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 AD--ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hh--ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22 1111 235666666667777777777777766554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=6.2 Score=37.54 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhc-CCCCCHHHHHHHHHHHHh
Q 037510 487 GKMTEAQKIFDKMKELGCL-PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKE-AIVPSIDMYNYLISVAFK 564 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 564 (806)
+....+...+......... .....+......+...+....+...+... ... ........+......+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKA---------LELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHH---------HhhhhccchHHHHHHHHHHHHH
Confidence 4445555555555544311 12455666666777777777777766654 111 233344555566666677
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH-HHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALIS-GWCDAGMLNKAFKAYFDMIEKGF--SPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
.+....+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 108 LGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 777778888877777643332 122222222 67788999999999988865321 12334444444556778889999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSP 721 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 721 (806)
...+.+........ ....+..+...+...++++.|...+..... ..|
T Consensus 187 ~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~ 233 (291)
T COG0457 187 LELLEKALKLNPDD-------------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALE--LDP 233 (291)
T ss_pred HHHHHHHHhhCccc-------------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCc
Confidence 99998887653210 245677788888888899999999999988 566
Q ss_pred C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 722 D-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 722 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+ ...+..+...+...|.++++...+.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 34555666666677789999999999887
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.1 Score=37.11 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHHHHHHH---HHhcCChhhHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 690 VYNIVIAG---ICKSGNVTDARRIFSALLLTGFSPDNFT-YSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 690 ~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+.+.|+.. -.+.++.+++..+++-+.- +.|.... -..-++.+...|+|.+|+.+|+++.+.+ |....-..|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 44445444 4577899999999999998 8888763 3345567889999999999999987742 4322233344
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 766 -SGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 766 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
.++...|+ .+-..+-+++.+.+-.|+.
T Consensus 85 A~CL~~~~D-~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 85 ALCLYALGD-PSWRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHcCC-hHHHHHHHHHHhcCCChHH
Confidence 34444444 4455556666665544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=6.2 Score=37.15 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
+..-|.+.|.+..|..-+++|++. -|+. .++-.+..+|.+.|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 456677778888888888888774 3332 145566677777777777766544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.06 Score=32.68 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=27.1
Q ss_pred HHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 746 RDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 746 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
|+++++ +.| ++..|+.|...|...|++++|++
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 567777 567 78899999999999999999963
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=8.1 Score=38.07 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 229 TYNSLIDGYVSLGDLN---GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 229 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
+...++.+|...+..+ +|.++++.+..... ..+..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4445555555555433 33444444433221 12334444455555556666666666666654
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.50 E-value=4.5 Score=34.84 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYC 344 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 344 (806)
++..+.+.+........++.+...+. .+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33444444444444444444444332 23334444444444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.2 Score=39.65 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN------FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVS 766 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 766 (806)
=+.-+.+.|++++|..-|..+++ +.|.. +.|..-+.++.+.+.|+.|++-..++++. .|. ......-..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHH
Confidence 35667899999999999999998 45543 35777778899999999999999999984 442 222223345
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 767 GLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+|.+..++++|+.=|+++.+ ..|...-.
T Consensus 177 ayek~ek~eealeDyKki~E--~dPs~~ea 204 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE--SDPSRREA 204 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH--hCcchHHH
Confidence 78889999999999999998 67765433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.9 Score=34.63 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 037510 338 SLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG 417 (806)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 417 (806)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555444 244445555555555432 2222233221 112333344555555555
Q ss_pred CHHHHHHHHHHH
Q 037510 418 DVDEALHLWLMM 429 (806)
Q Consensus 418 ~~~~a~~~~~~~ 429 (806)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.31 Score=46.82 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=77.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSG 772 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 772 (806)
-+.-|.++|.+++|++.|...+. ..| +.+++..-..+|.+...+..|..-...++..+ ..=...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999888 778 77899999999999999999988888887632 101223444444445568
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 773 ELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+.+||.+-++...+ +.|+..-.+....
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccHHHHHHHH
Confidence 88999998888887 7888655544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.19 E-value=16 Score=42.23 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH
Q 037510 240 LGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIR 319 (806)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (806)
.++++.|..-+.++. ...|.-.++.--+.|-+.+|+.++.-=.+. -...|.+....+...+.+++|.-
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~-----~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEK-----QKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHH-----HHHHHHHHHHHHHHhccccHHHH
Confidence 345666655554443 234455555556677777777765422211 12244444555566777888877
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhc--HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 320 VLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFS--FNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
+|+..-+. ..-+.+|..+|++.+|..+..++... .+... -..|+.-+...++.-+|-++..+....
T Consensus 961 ~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 961 MYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 77654321 23466777888888888888777532 22222 245667777788888888887776653
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 398 GIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 398 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
..-.+..+|+...+++|..+.....
T Consensus 1029 --------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 --------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred --------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1234455666777788777665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.35 Score=42.31 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD-----------INEAFNLRDEMLKINLVPNIATYNSLVSGLCNS 771 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 771 (806)
+++|+.-|++.+. +.|+.. ++..++.+|...+. +++|.+.|+++.+ ..|+...|..-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 4455555666666 778763 77777777766542 3445555555555 567777766544333
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 037510 772 GELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~ 789 (806)
.+|-++..++.++|.
T Consensus 124 ---~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HhhHHHHHHHHHHHh
Confidence 346666666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.99 E-value=15 Score=39.36 Aligned_cols=160 Identities=17% Similarity=0.101 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhH-
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLRQGIEPSV------VTYNTLLKGLCR----VGDVDEALHLWLMMLKRCVCPNEVGY- 441 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~- 441 (806)
.++....-.|+-+.+++.+.+..+.+-.-.+ -.|...+..++. ....+.|.+++..+... -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444456666666666655442111011 123333333333 34566777777777775 3444433
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC--C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARG--F-YKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSD-G 517 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 517 (806)
-.-.+.+...|+.++|++.|++..... . ......+--+...+....+|++|...+..+.+..-. +...|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 334456667788888888888655321 0 112233445566777889999999999999886422 2333333332 3
Q ss_pred HHhcCCh-------HHHHHHHHHHH
Q 037510 518 YCKVGNL-------EEAFKIKNLME 535 (806)
Q Consensus 518 ~~~~g~~-------~~A~~~~~~~~ 535 (806)
+...|+. ++|.+++.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4467777 78888887763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.22 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.91 Score=43.64 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATYN 762 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 762 (806)
.++..++..+...|+.+.+.+.++++.. ..| +...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3777888888888888888888888888 566 446888888888888888888888888765 47777666555
Q ss_pred HHHHH
Q 037510 763 SLVSG 767 (806)
Q Consensus 763 ~l~~~ 767 (806)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.59 E-value=9.1 Score=35.91 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=102.3
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChh---hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCC--CCHhHHHHHHHHHHhc
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLR---SCNCLLSNLVKNGEGYVALLVYEQMMRV---GIV--PDVFTCSIVVNAYCKE 205 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~--~~~~~~~~l~~~~~~~ 205 (806)
+...+++|+.-|+++.+........ +...++....+.|++++....|.+++.. .+. -+..+.|.++.-....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888999999888764443433 5556788888999999988888888652 111 1233455555555545
Q ss_pred CChhHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CC-------hhhHHHHH
Q 037510 206 KSMEKALDFVKEMENL----G-FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGIS----RT-------AVTYTTLT 269 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~-------~~~~~~li 269 (806)
.+.+.-..+++.-+.. . -..--.|-+-|...|...|++....+++.++...-.. .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5544444444332211 0 0000112344566666777777777777666543110 01 23455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHH----HHHhcCChHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID----GYCKVGKVDEAIRVL 321 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~ 321 (806)
..|..+.+-.+-..+|++........|.+.....+-. ...+.|++++|..-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 6666666666666666665554344444433332211 223456666665433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=11 Score=36.93 Aligned_cols=235 Identities=11% Similarity=0.005 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCH----hHHHHHHHHHHHC
Q 037510 506 PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSREL----TSLVDLLAEMQTM 581 (806)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~ 581 (806)
+|.......+.++...|..+....+.. + -..++...-...+.++.+.|+. +++...+..+...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~-l------------l~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIE-L------------CSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHH-H------------HhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 455555556666666654333222222 2 1133455555566666666653 4677777776444
Q ss_pred CCCCCHhHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 582 GLYPNIVTYGALISGWCDAGM-----LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
.|+...-...+.++...+. ...+...+..+.. .++..+-...+.++.+.|+ ++|...+-.+.+.
T Consensus 102 --D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----- 170 (280)
T PRK09687 102 --DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----- 170 (280)
T ss_pred --CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----
Confidence 4566666566666655442 1234444444433 3466677777888888776 5666776666653
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG-NVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 735 (806)
+|..+-...+.++...+ ...++...+..++. .++..+-...+.++.+
T Consensus 171 -----------------------------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 171 -----------------------------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLAL 218 (280)
T ss_pred -----------------------------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHc
Confidence 23334444555555543 24567777777774 5677777788888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
.|+ ..|+..+-+.++.+ + .....+.++...|. ++|...+..+.+ -.||..+-...+.+|.+
T Consensus 219 ~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~--~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 219 RKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY--KFDDNEIITKAIDKLKR 279 (280)
T ss_pred cCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh--hCCChhHHHHHHHHHhc
Confidence 888 67888888887743 2 24567788999999 479999999887 46788888888887764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.26 Score=29.84 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566777777777777777777777777
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.29 E-value=7.1 Score=33.92 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHcCChhhHHHHHHHhhhc
Q 037510 132 YAQKGMLKNALHVFDNMGKY 151 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~ 151 (806)
+..+|++.+|+.+|+.+...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 44555566666665555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.7 Score=38.22 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 740 NEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGE-----------LDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
++|+.-|++++. +.|+ ..++..++.+|...|. +++|...|++..+ ..|+...|+.-++...|
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 455555666665 4553 3455556655553332 3445555555554 56766666666655443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.16 E-value=21 Score=39.07 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.++...+++++-.++-+...
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------------------- 742 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------------------- 742 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------------------
Confidence 34444555667788888877665553 5677777777788888888888776665543
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.+.-|.-...+|.++|+.++|..++-+... . .-...+|.+.|++.+|.++--+
T Consensus 743 ------------------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~------l---~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ------------------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG------L---QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ------------------CCCCchhHHHHHHhcccHHHHhhhhhccCC------h---HHHHHHHHHhccHHHHHHHHHH
Confidence 122344467788888888888887765422 1 1466777888888888776544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.15 E-value=8.2 Score=34.57 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
...+...|++++|...++..+......+ ..+-..|.......|.+|+|+..++.....++.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~---------------- 159 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA---------------- 159 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH----------------
Confidence 4457788899999888888775311111 1222345566777888888888888776655432
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 718 (806)
.....-++.+...|+.++|..-|++.++.+
T Consensus 160 -----------------~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 160 -----------------IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -----------------HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 234455778888888888888888888854
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.3 Score=29.47 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|..++.+|...|++++|++.|+++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.7 Score=41.77 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHhHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMR-----VGIVPDVFTCS 196 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~~~ 196 (806)
.++..++..+...|+++.+.+.++.+....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34556666666677777777777776666543 566667777777777777777766666654 24555444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.34 Score=29.19 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
.|..++..+...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 678899999999999999999999999 6776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.50 E-value=28 Score=39.14 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
.|+......|+.++|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.46 E-value=4.7 Score=34.28 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHHHHH---HhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHH
Q 037510 690 VYNIVIAGI---CKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSL 764 (806)
Q Consensus 690 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 764 (806)
+.+.|+... ...++++++..+++.|.- +.|+.. .-..-++.+...|+|.+|+.+|++..+.+ +. +..--.+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~ 84 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCchHHHHHH
Confidence 444444433 357899999999999998 788775 33345567889999999999999998743 22 2222223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
..++.-.|+ ..=..+-.++.+.|-.|+.
T Consensus 85 A~CL~al~D-p~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 85 ALCLNAKGD-AEWHVHADEVLARDADADA 112 (153)
T ss_pred HHHHHhcCC-hHHHHHHHHHHHhCCCHhH
Confidence 344444454 2333344445554444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.38 Score=29.63 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+|+.|+..|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.33 E-value=16 Score=36.02 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=91.6
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChh-------hHHHHHHHHHHcC-ChHHHHHHHHHHHHC--------CCCCCH----
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLR-------SCNCLLSNLVKNG-EGYVALLVYEQMMRV--------GIVPDV---- 192 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~-~~~~A~~~~~~m~~~--------~~~~~~---- 192 (806)
.++|+++.|...+.+........++. .+..........+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 36788899999988877643112222 2233344445566 888888777765443 123333
Q ss_pred -hHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037510 193 -FTCSIVVNAYCKEKSME---KALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL 268 (806)
Q Consensus 193 -~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (806)
.++..++.++...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+++.+.+.+|...-. .....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 35667778887777654 5666666665442 22345555566777778999999999999987521 123444444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHh
Q 037510 269 TKGY---CKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 269 i~~~---~~~g~~~~a~~~~~~~~~ 290 (806)
+..+ .... ...+...+..+..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHH
Confidence 4444 3333 3344444444443
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=12 Score=34.09 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 037510 548 IVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG 617 (806)
Q Consensus 548 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 617 (806)
+.|+ +.+||.|.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+.+....+
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC
Confidence 4454 5778888888888899999999998888763222222222222 2345688888887777777653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.71 E-value=19 Score=35.70 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcC
Q 037510 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCK--Q----HKMEEAENMLRRMKEED 292 (806)
Q Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~ 292 (806)
+...+++.+.+.|+..+..+|-+..-.... . .....|..+|+.|++..
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 344556666666665555444332222111 1 12345566666666653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.59 E-value=33 Score=38.42 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=36.8
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCC-------hhhHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCcHHHH
Q 037510 415 RVGDVDEALHLWLMMLKRCV-CPN-------EVGYCTLLDILFNKGDFYGAVKLWN--------NILARGFYKNTITF 476 (806)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~ 476 (806)
-.+++..|......+..... .|+ ...+....-.+...|+.+.|...|. .....+...+..++
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 36788888888888876421 111 2222223333445789999999997 44455544444444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.29 E-value=2.9 Score=37.22 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=55.6
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 597 WCDAGMLNKAFKAYFDMIEKGFSPN-----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 597 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
+...|++++|..-|..+++. +++. .+.|..-..++.++++++.|+.-..+.++.++.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt----------------- 166 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT----------------- 166 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-----------------
Confidence 45667777777777777764 2322 334444455666777777777777777766532
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF 724 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 724 (806)
...++---..+|-+...+++|++-|.++++ ..|...
T Consensus 167 ---------------y~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 167 ---------------YEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred ---------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchH
Confidence 111222224456666677777777777777 556543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.97 E-value=3 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCc--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIP--SLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
..+..+...|.+.|+.++|++.|.++......+ -...+-.+++.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346677788888888888888888877653222 244667777777778888777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.90 E-value=13 Score=32.75 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=9.9
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCC
Q 037510 220 NLGFELNVVTYNSLIDGYVSLGD 242 (806)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~ 242 (806)
+.+++|+...+..++..+.+.|.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.6 Score=40.87 Aligned_cols=93 Identities=19% Similarity=0.089 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
++-|.++|++++|+..+.+.+...+ -|++++..-..+|.+..++..|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P--------------------------------~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP--------------------------------HNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC--------------------------------CCccchhhHHHHHHHHHHHHHHH
Confidence 3558899999999999998876642 27788888888999999999888
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
.-...++.. .-.- -+|.--+.+-...|+.++|.+-++..++ ++|+
T Consensus 152 ~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 152 EDCEAAIAL--DKLYVKAYSRRMQARESLGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HhHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHh--hCcc
Confidence 877777662 1111 2566666666667888888888888887 6775
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.66 E-value=40 Score=37.96 Aligned_cols=234 Identities=15% Similarity=0.055 Sum_probs=125.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCH---HHHHHHH-HHHHhcCCHhHHHHHHHHHHHC----CCCCCHh
Q 037510 517 GYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSI---DMYNYLI-SVAFKSRELTSLVDLLAEMQTM----GLYPNIV 588 (806)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~ 588 (806)
......++++|..+..++...- ...+..+.. ..++.+- ......|+++.|.++.+..... -..+...
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l-----~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFL-----KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHh-----CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3445678888888888773321 111112221 2233332 2344578889999888877653 1233455
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHhhCCCCCChhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV-----STLCRLGK--IDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
.+..+..+..-.|++++|..+..+..+..-..+...+..+. ..+..+|+ ..+....+.........-
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q------ 572 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ------ 572 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh------
Confidence 66677777778899999998888777643233444333322 23456673 223333333332221100
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCH--H--hHHHHHHHHHh
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--FSPDN--F--TYSTLIHGYAA 735 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~--~--~~~~l~~~~~~ 735 (806)
.....+-..+...+..++.+ ++.+..-.....+.| ..|.. . .+..|+.....
T Consensus 573 -------------------~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 573 -------------------KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred -------------------cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 00000112234444555544 444444444433332 22332 2 33478888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhc-H---HHHHHH--HHhcCCHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIAT-Y---NSLVSG--LCNSGELDRAKRLFCK 783 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~-~---~~l~~~--~~~~g~~~~A~~~~~~ 783 (806)
.|+.++|...+.++......+.... | ...+.. -...|+.++|..+..+
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 631 RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999999999987433332222 1 222222 2267888888887766
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.41 E-value=15 Score=32.51 Aligned_cols=101 Identities=6% Similarity=-0.023 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037510 178 LVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKG 257 (806)
Q Consensus 178 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 257 (806)
+....+.+.++.|+...+..++..+.+.|++....++ ...++-+|.......+-. -.+....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH-
Confidence 3444445556666666777777777776665443333 333333333322222211 112233444444444432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 258 ISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
=...+..++..+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1114555666677777777777776664
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.64 E-value=18 Score=32.55 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
+...+...|++++|...++..+.. .-|.. +--.|.......|.+++|+.+++.....+.. ......-+++|.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 456677889999999999888762 22221 2334667788889999999998887664322 222344567888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 037510 770 NSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m~~~g 788 (806)
..|+.++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999988865
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.77 Score=27.65 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|..++..|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555555555444
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.89 E-value=5.3 Score=42.13 Aligned_cols=150 Identities=20% Similarity=0.123 Sum_probs=99.1
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 037510 239 SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAI 318 (806)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 318 (806)
-.|+++.|..++..+.+ ...+.+++.+-++|-.++|+++- +|..- -.....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHH
Confidence 45777777776655442 24456677777888888877642 23221 123345678888888
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 319 RVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG 398 (806)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 398 (806)
++..+.. +..-|..|.+...+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 8776543 567788999999999999999998876554 4566666777777766666666666555
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 399 IEPSVVTYNTLLKGLCRVGDVDEALHLWLMM 429 (806)
Q Consensus 399 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 429 (806)
.. |...-++...|+++++.+++..-
T Consensus 723 ~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 32 33344566778888887776553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.61 E-value=24 Score=32.76 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHc--CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 601 GMLNKAFKAYFDMIEK--GFSPNVA---ICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
.++++|+..|++.-+. |-..+.. .+..+..--...+++.+|+.+|+++......
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666666542 2122222 2222233334678899999999988766443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.2 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 724 FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.+++.|+..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777777777777777777777665
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.24 E-value=55 Score=36.60 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
+|-.+.|+|++++|.++..+.... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 455677999999999988655543 345566777788888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.20 E-value=52 Score=36.28 Aligned_cols=249 Identities=16% Similarity=0.042 Sum_probs=130.7
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcccChhhhhcCCCCCH
Q 037510 485 KMGKMTEAQKIFDKMKE-------LGCLPNIITYRTLSDGYCKVG-----NLEEAFKIKNLMERREILPSMEKEAIVPSI 552 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (806)
...+.+.|..+++.+.+ .| +......+..+|.+.. +.+.|..++... ...+. |+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a---------A~~g~-~~a 327 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA---------AELGN-PDA 327 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHH---------HhcCC-chH
Confidence 34456666666666654 44 3334555666666543 566788888766 33332 222
Q ss_pred HHHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH--HccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037510 553 DMYNYLISVAFK---SRELTSLVDLLAEMQTMGLYPNIVTYGALISGW--CDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627 (806)
Q Consensus 553 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 627 (806)
... +...+.. ..+...|.++|....+.|.. ....+..+.... .-..+...|..++.+..+.| .|...--..
T Consensus 328 ~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~ 403 (552)
T KOG1550|consen 328 QYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLG 403 (552)
T ss_pred HHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHH
Confidence 222 2222222 24577899999998888732 222222222111 12346788999999998887 333222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH--HHHH--hcCC
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI--AGIC--KSGN 703 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~--~~g~ 703 (806)
.+..+.. +.++.+...+..+...+...... +...+.... .... ...+
T Consensus 404 ~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~----------------------------~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 404 AFYEYGV-GRYDTALALYLYLAELGYEVAQS----------------------------NAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred HHHHHcc-ccccHHHHHHHHHHHhhhhHHhh----------------------------HHHHHHHhccccccccccccc
Confidence 3333444 77777777776666655331100 000000000 0001 1224
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH----hcCCHH
Q 037510 704 VTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV----GDINEAFNLRDEMLKINLVPNIATYNSLVSGLC----NSGELD 775 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~ 775 (806)
...+...+.+....| +......|.+.|..- .+.+.|...|..+...+ ......|...+. -.. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 556666666665543 344555555555443 35777888888777654 333333333322 334 68
Q ss_pred HHHHHHHHHHHC
Q 037510 776 RAKRLFCKLRQK 787 (806)
Q Consensus 776 ~A~~~~~~m~~~ 787 (806)
.|.++++...+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 888888887763
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.81 E-value=40 Score=34.59 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
...++..++..+.+.|.++.|...+.++...+..+. ...+.+.-.-+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----------------------------~~~~~v~~e~akllw~ 196 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----------------------------SLLPRVFLEYAKLLWA 196 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----------------------------CCCcchHHHHHHHHHH
Confidence 455677777778888888888888888776542211 0022233334556667
Q ss_pred cCChhhHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLL 716 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~ 716 (806)
.|+..+|+..+++.++
T Consensus 197 ~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 197 QGEQEEAIQKLRELLK 212 (352)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.62 E-value=3.1 Score=39.91 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=63.7
Q ss_pred hccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh-----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 116 KEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR-----SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
++.+.+..+.+.++..-....++++++..+-++... |+.. +-...++.+ -.=++++++.++..-++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhcccc
Confidence 344555555566666666677788888877766643 2111 111222222 2335667777777777777778
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENL 221 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 221 (806)
|..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888877777777666543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.56 E-value=1.4 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
|..+|...|+.+.|.++++++...|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45556666666666666666555433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.95 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
+|..++..|...|++++|.+.|++..+ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 678899999999999999999999998 5564
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.19 E-value=62 Score=36.18 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKV 311 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 311 (806)
...| .+|-.+.++|++++|.++.....+. .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 3345 4566677889999998888666554 445556777777777764
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.06 E-value=10 Score=40.08 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
.-|..|.++....|++..|.+.|.....
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455555555555555555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.94 E-value=48 Score=34.68 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=104.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLID 235 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 235 (806)
|-...-+++..+..+.+++-...+..+|+..| -+-..|..++.+|... .-+.-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445556666666666677777777777643 4555666666666665 445566677766665432 4444444555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 037510 236 GYVSLGDLNGAKRVLEWTCEKGISR--T---AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310 (806)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 310 (806)
.|-+ ++...+...|.++..+=++. + -..|.-|...- ..+.+..+.+...+....|..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66666666666665542211 0 12344333321 245566666666666554444445556666667777
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 037510 311 VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 343 (806)
..++.+|++++....+..-+ |......++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 78888888888877776433 555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.6 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.2
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999999764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.29 E-value=9 Score=36.98 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCM 359 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (806)
+.++++.++..=+.-|+-||-.+++.+|+.+.+.+++.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555544444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.14 E-value=66 Score=35.50 Aligned_cols=113 Identities=15% Similarity=0.051 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhhhcCCCcChhhHHHHHHHH-----HHcCChHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhc
Q 037510 138 LKNALHVFDNMGKYGCIPSLRSCNCLLSNL-----VKNGEGYVALLVYEQMMR-------VGIVPDVFTCSIVVNAYCKE 205 (806)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~A~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~ 205 (806)
..+|.++++...+.| ++.....+...+ ....+.+.|+..|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666666654 333333333222 244566667777766655 33 222344445555443
Q ss_pred C-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcC
Q 037510 206 K-----SMEKALDFVKEMENLGFELNVVTYNSLIDGYVS-LGDLNGAKRVLEWTCEKG 257 (806)
Q Consensus 206 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~ 257 (806)
. +.+.|..++......|. |+....-..+..... ..+...|.++|......|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 2 44556666666666552 333322222221111 234556666666666655
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=71 Score=35.83 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCCh
Q 037510 119 AFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEG 173 (806)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 173 (806)
+.+...-.....+....|+.++|....+.+-..|. ..+..|+.++..+.+.|..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 44555555666666667776666666665544443 2456666666666655554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.85 E-value=12 Score=31.21 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
|.-++.+.|++++++++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.85 E-value=44 Score=33.23 Aligned_cols=190 Identities=12% Similarity=0.023 Sum_probs=119.7
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC----DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR----L 635 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 635 (806)
..+++..+...+......+ +......+...|. ...+..+|.+.|..+.+.| .......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 3455666666666666533 2233333333333 3346788999999887766 33334445555554 3
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc-------CChhhHH
Q 037510 636 GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS-------GNVTDAR 708 (806)
Q Consensus 636 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~ 708 (806)
.+..+|..+++++.+.|..+- ..+...+...|..- .+...|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-------------------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-------------------------------ALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-------------------------------HHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 488999999999999875431 11233344443332 1234799
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC------------
Q 037510 709 RIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSG------------ 772 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------ 772 (806)
..|.++...+ +......|+..|.. ..+.++|...|+++.+.|. ......+. .+...|
T Consensus 176 ~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 176 YLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 9999988865 44444555555533 3488999999999999774 33333344 555555
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHhhHH
Q 037510 773 ---ELDRAKRLFCKLRQKGLTPTVVTYN 797 (806)
Q Consensus 773 ---~~~~A~~~~~~m~~~g~~p~~~~~~ 797 (806)
+...|..++......|.........
T Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 249 KEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 8888999999998887777666555
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.22 E-value=21 Score=33.23 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=78.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
|....+++.|+..+-+.+...+. .+.-|..-+-++.+..+++.+..--
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~--------------------------------~~~Y~tnralchlk~~~~~~v~~dc 67 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPT--------------------------------VASYYTNRALCHLKLKHWEPVEEDC 67 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCC--------------------------------cchhhhhHHHHHHHhhhhhhhhhhH
Confidence 44456677777777777665432 2234566777888888899888888
Q ss_pred HHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 712 SALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK----INLVPNIATYNSLVSGLCNSGELDRAKRL 780 (806)
Q Consensus 712 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 780 (806)
.+.++ +.|+.+ ....++.+......+++|+..+.++.+ +.+.+-..+...|..+=.+.=...++.++
T Consensus 68 rralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 68 RRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 88888 889887 666788888888999999999999865 23444444555555554433334444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.92 E-value=29 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHcCChhhHHHHHHHhhhc
Q 037510 132 YAQKGMLKNALHVFDNMGKY 151 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~ 151 (806)
+..+|++++|+.+|+.+...
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 45566677777776666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.06 E-value=1.4 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.++.+.|++++|.++++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444555555555554443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.66 E-value=12 Score=34.72 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=80.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCC
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA-TYNSLVSGLCNSGE 773 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 773 (806)
..|....++..|+..|.+.+. +.|+.. -|..-+-.|.+..+|+.+..-..++++ +.||.+ .-..|..++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 355667789999999999998 889985 566778888899999999999999998 677654 44567778888888
Q ss_pred HHHHHHHHHHHH----HCCCCCCHhhHHHHHHh
Q 037510 774 LDRAKRLFCKLR----QKGLTPTVVTYNILIDG 802 (806)
Q Consensus 774 ~~~A~~~~~~m~----~~g~~p~~~~~~~li~~ 802 (806)
+++|+..+.+.. ++.+.|....++.|..+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 999999988863 44566666666666544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.61 E-value=14 Score=34.48 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHhcCChhhHHHHHHHHHHC----CCCCCHH--hHHHHHHHHHhcCCHH-------HHHHHHHHHHHcCCCC----C-hh
Q 037510 698 ICKSGNVTDARRIFSALLLT----GFSPDNF--TYSTLIHGYAAVGDIN-------EAFNLRDEMLKINLVP----N-IA 759 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~----g~~p~~~--~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p----~-~~ 759 (806)
+.....+++|++.|.-++-. +..|... .+--++|.|...|+.+ .|.+.|+++.+..-.| + ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34445567777766654421 3344432 6777889999998844 4666666666532222 2 23
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
....++....+.|+.++|.++|.++...+-.+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 444555677799999999999999997544433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.60 E-value=4 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
+.-++.+.|++++|.++.+.+.+ +.|+......|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 33445555555555555555555 45554444333
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.07 E-value=59 Score=31.94 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hc
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLT----GFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI----AT 760 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~ 760 (806)
.+.....-||+.|+.+.|.+.+.+-.++ |..-|.+ +.--|+-.|....-+.+-++-.+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 5566778899999999999998876654 7777876 3444555666666677777788888887755433 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
|..+- +....++.+|-.+|-+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 43331 334567888888877754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.74 E-value=1.9 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444445555555555555444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.71 E-value=1e+02 Score=34.41 Aligned_cols=105 Identities=8% Similarity=-0.028 Sum_probs=58.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC
Q 037510 75 VHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCI 154 (806)
Q Consensus 75 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (806)
++.+.+.+.+++|+.+.....+..+ . .....+-...+..+.-.|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~----~--------------~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---- 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE----R--------------FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---- 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc----c--------------cchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----
Confidence 6677788888888776655433210 0 01233455667777778888888888777775
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 037510 155 PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCK 204 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 204 (806)
.+...|..-+..+...+.......+ +.......+...|..++..+..
T Consensus 421 n~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 421 NNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 2555555555555544443322222 1111112344566666666654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.39 E-value=1.1e+02 Score=34.51 Aligned_cols=117 Identities=9% Similarity=-0.089 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHH
Q 037510 311 VGKVDEAIRVLNEMLKTG-LEMN--LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEA 387 (806)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 387 (806)
..+.+.|..++....... ..+. ..+...+.......+...+|...++...... .+.....--+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777664432 2211 1223333333333323556666666544322 2333344445555577777777
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 388 FRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 388 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
...+..|....- -...-.--+.+++...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777644321 122333445666666777777777777763
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.37 E-value=2.4 Score=23.69 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 037510 762 NSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~ 782 (806)
..+...+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.16 E-value=20 Score=32.59 Aligned_cols=80 Identities=19% Similarity=-0.009 Sum_probs=58.4
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhcHHHHHHHHHhcCCHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKI---NLVPNIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 775 (806)
...-.-++|...|-++...+.--+......|+ .|....|.++|+.++-++++. +-.+|+..+..|+..+.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33434567888888877765444444444454 445567899999999999973 33668899999999999999999
Q ss_pred HHHH
Q 037510 776 RAKR 779 (806)
Q Consensus 776 ~A~~ 779 (806)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8854
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 806 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 4e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.9 bits (208), Expect = 5e-17
Identities = 23/202 (11%), Positives = 55/202 (27%), Gaps = 4/202 (1%)
Query: 310 KVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVL---RCMGDWNLRP 366
+D + + L + Q+ A +L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 367 DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL-HL 425
+N ++ G+ R+ E + + G+ P +++Y L+ + R +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 426 WLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK 485
M + + + LL K+ + + +++ +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 486 MGKMTEAQKIFDKMKELGCLPN 507
K+ +K L CL
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.9 bits (203), Expect = 3e-16
Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 3/187 (1%)
Query: 255 EKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKE--EDDVIVDEYAYGVLIDGYCKVG 312
+ +S K ++ A ++L + ++ Y ++ G+ + G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEA-KRVLRCMGDWNLRPDSFSF 371
E + VL + GL +LL + + + Q +R L M L+ +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 372 NTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK 431
L+ R + ++ P V + LL+ + L L +
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
Query: 432 RCVCPNE 438
+
Sbjct: 300 LQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.1 bits (193), Expect = 4e-15
Identities = 21/173 (12%), Positives = 50/173 (28%), Gaps = 7/173 (4%)
Query: 488 KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA 547
+ Q + + L A + + ++
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG------QRQKR 160
Query: 548 IVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAF 607
+ ++DMYN ++ + LV +L ++ GL P++++Y A +
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 608 KAYF-DMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKY 659
+ M ++G + L+S R + + +P
Sbjct: 221 ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.8 bits (187), Expect = 2e-14
Identities = 27/270 (10%), Positives = 61/270 (22%), Gaps = 40/270 (14%)
Query: 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLK 411
A + C P L+ + + + + + K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 412 GLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYK 471
+ A HL L++ +
Sbjct: 136 CCLLTDQLPLAHHL-LVVHHG-------------------------------QRQKRKLL 163
Query: 472 NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIK 531
+N ++ G + G E + +K+ G P++++Y +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI--- 220
Query: 532 NLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYG 591
L M +E + L+S ++ L ++ + P V
Sbjct: 221 -----ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 592 ALISGWCDAGMLNKAFKAYFDMIEKGFSPN 621
L+ K + +
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 2e-14
Identities = 19/178 (10%), Positives = 52/178 (29%), Gaps = 7/178 (3%)
Query: 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCV-PNYVVY 691
R+ ++ + +F L + ++++A L++ R P
Sbjct: 39 MRMQRLKAKLQMPFQSGEFK---ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQL 95
Query: 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNL---RDE 748
++ ++ + S + A +L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 749 MLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
+ + + YN+++ G G + ++ GLTP +++Y + +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 2e-13
Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 155 PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKA--- 211
P LL V Q + + + A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 212 LDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKG 271
L L + YN+++ G+ G VL + G++ ++Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 272 YCKQHKMEEA-ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLE 330
+Q + E L +M +E + + VL+ + + +V
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALF-TAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 331 MNLLICNSLINGYCK 345
+ + L+
Sbjct: 269 PPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 2e-11
Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
Query: 691 YNIVIAGICKSGNVTDARRIFSAL---LLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRD 747
+ + A + Y+ ++ G+A G E +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 748 EMLKINLVPNIATYNSLVSGLCNSGELDRA-KRLFCKLRQKGLTPTVVTYNILIDGYCKA 806
+ L P++ +Y + + + + +R ++ Q+GL + +L+ +A
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 2e-10
Identities = 24/212 (11%), Positives = 61/212 (28%), Gaps = 6/212 (2%)
Query: 128 ILKIYAQKGMLKNALHVFD---NMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMM 184
K L A H+ + + +L N ++ + G + V +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 185 RVGIVPDVFTCSIVVNAYCK-EKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDL 243
G+ PD+ + + + + ++ +++M G +L + L+ L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 244 NGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGV 303
+V V + L + + + +K + + +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH--M 310
Query: 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLI 335
+ V V++ E+ + L
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 1e-08
Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 1/138 (0%)
Query: 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYST 728
A + + + + +YN V+ G + G + + + G +PD +Y+
Sbjct: 146 AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 729 LIHGYAAVGDINEAFN-LRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQK 787
+ ++M + L L+S + L ++
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 788 GLTPTVVTYNILIDGYCK 805
P V + L+
Sbjct: 266 PQLPPPVNTSKLLRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 1e-11
Identities = 114/734 (15%), Positives = 222/734 (30%), Gaps = 255/734 (34%)
Query: 30 FDFSD--DLLDSVLQKLRLN-----PDASLG----FFQLASKQQKFRPNIKCYCKIVHIL 78
FD D D+ S+L K ++ DA G F+ L SKQ++ +V
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE----------MV--- 79
Query: 79 SRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIY-AQKGM 137
+ F+ E++ + NY FL + ++ P+ M+ ++Y Q+
Sbjct: 80 ---------QKFVEEVL---RINY-KFL-MSPIKTEQRQ----PS---MMTRMYIEQRDR 118
Query: 138 LKNALHVFDNMGKYG-----CIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDV 192
L N VF KY LR L L V + + ++ G
Sbjct: 119 LYNDNQVFA---KYNVSRLQPYLKLRQA---LLEL--RPAKNVLI---DGVLGSGK---- 163
Query: 193 FTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEW 252
+ V C ++ +DF + + W
Sbjct: 164 ---TWVALDVCLSYKVQCKMDF-----------KI---------F--------------W 186
Query: 253 TCEKGISRTAVTYTTLTKGYCKQHK--MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310
L C + +E + +L ++ +
Sbjct: 187 ---------------LNLKNCNSPETVLEMLQKLLYQIDPN----------------WTS 215
Query: 311 VGKVDEAIRVLNEMLKTGLEMNLLI----CNSLINGYCKLGQVCEAKRVLRCMGD-WNLR 365
I++ ++ L LL N L+ VL + N +
Sbjct: 216 RSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLL--------------VLL---NVQNAK 257
Query: 366 P-DSFSFN--TLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEA 422
++F+ + L+ T F+ + L + ++ + L DE
Sbjct: 258 AWNAFNLSCKILL---------TTRFKQVTDFL-SAATTTHISLDHHSMTL----TPDEV 303
Query: 423 LHL---WLMMLKRCVCPNEVGYCT----LLDILFNKGDFYGA-----VKLWNNILARGFY 470
L +L + + P EV T L I+ + W+N +
Sbjct: 304 KSLLLKYLDCRPQDL-PREV--LTTNPRRLSII-------AESIRDGLATWDNWK----H 349
Query: 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLP-NI-ITYRTLSDGYCKVGNLEEAF 528
N T+I+ + + E +K+F L P + I LS + V +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDV-IKSDVM 405
Query: 529 KIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588
+ N + + ++ EK+ +I + + + + K +L + +IV
Sbjct: 406 VVVNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYAL------------HRSIV 450
Query: 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKM 648
+ + + ++ YF S + L + + +F
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYF-------------YSHIGHHLKNIEHPERMTLFRMVF 497
Query: 649 VDFDFVPD-LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707
+DF F+ +++ S+A N + + Y Y IC + +
Sbjct: 498 LDFRFLEQKIRH-DSTAWNASGSILNTLQQ-------LKFYKPY------ICDNDPKYE- 542
Query: 708 RRIFSALLLTGFSP 721
R+ +A+L F P
Sbjct: 543 -RLVNAIL--DFLP 553
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 65/473 (13%), Positives = 125/473 (26%), Gaps = 151/473 (31%)
Query: 27 NLSFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARM-FD 85
NL S + + +LQKL + PN + S ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLY----------------QIDPN---WTSRSDHSSNIKLRIH 228
Query: 86 ETRAFLYELVGLCKNNYAGFLI-----WD-ELVRAYKEFAFS---------PTVFDMILK 130
+A L L L Y L+ + + A F S V D +
Sbjct: 229 SIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSA 283
Query: 131 IYAQKGMLKNALHVFDN------MGKY-GCIPS-LRSCNCLLSNLVKNGEGYVALLVYEQ 182
L + + KY C P L + ++++ +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------LSIIA--E 335
Query: 183 MMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVK--EMENLGFELNVVTYNSLIDGYVSL 240
+R G + VN +E +L+ ++ E + L+V ++ I
Sbjct: 336 SIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------ 387
Query: 241 GDLNGAKRVLE--WTCEKGISRTAVTYTTLTKGYCKQHKMEEAENML-----RRMKEEDD 293
+L W + ++ + E+
Sbjct: 388 -----PTILLSLIWF---------------------DVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 294 VIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAK 353
E + Y ++ E L+ S+++ Y
Sbjct: 422 ---KESTIS-IPSIYLELKVKLENEYALH--------------RSIVDHY---------- 453
Query: 354 RVLRCMGDWNLRP---DSFSFNTLVDGY-CRECDMTEAFRLCAEM------LRQGIEPSV 403
+ + +L P D + ++ + G+ + + E L + L Q I
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 404 VTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGY----CTLLDILFNKG 452
+N L + L K +C N+ Y +LD L
Sbjct: 512 TAWNASGSILNTLQQ--------LKFYKPYICDNDPKYERLVNAILDFLPKIE 556
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 37/315 (11%), Positives = 81/315 (25%), Gaps = 35/315 (11%)
Query: 226 NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRT---AVTYTTLTKGYCKQHKMEEAE 282
VV S G +L + VL + T V + G ++
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVL----CQAHGLTPEQVVAIASHDGGKQALETVQALL 160
Query: 283 NMLRRMKE--EDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLI 340
+L + + V+ A G + V + VL + + ++ S
Sbjct: 161 PVLCQAHGLTPEQVV----AIASNGGGKQALETVQRLLPVLCQAHGLTPQ-QVVAIASNG 215
Query: 341 NGYCKLGQVCEA----KRVLRCMGDWNLRPDSF-SFNTLVDGYCRECDMTEAFRLCAEML 395
G L V + L P + + G + + +
Sbjct: 216 GGKQALETVQRLLPVLCQAHG------LTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 269
Query: 396 RQGIEP-SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVG-YCTLLDILFNKGD 453
G+ P VV + G + V L + + P +V +
Sbjct: 270 --GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALET 325
Query: 454 FYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN-IITYR 512
+ + + + + G + + + + L P ++
Sbjct: 326 VQRLLPVLCQAHGLTP-QQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVAIA 382
Query: 513 TLSDGYCKVGNLEEA 527
+ G + ++
Sbjct: 383 SNGGGKQALETVQRL 397
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 806 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.43 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.39 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.77 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.59 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.41 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.29 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.12 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.06 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.99 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.8 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.2 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.82 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.62 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.29 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.95 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.21 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.07 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.9 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.54 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.98 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.84 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.31 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.72 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.82 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.19 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.32 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.76 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.36 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.85 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.25 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.37 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.27 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=365.78 Aligned_cols=494 Identities=12% Similarity=0.054 Sum_probs=405.8
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHH
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 212 (806)
...|.+..+...+..+.. +++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 345556666666665543 5788899999999999999999999999986 5678888889999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCC
Q 037510 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK---------------GISRTAVTYTTLTKGYCKQHK 277 (806)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~ 277 (806)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999988653 678889999999999999999999999853221 223357899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 278 MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAI--RV-LNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
+++|+++|++|.+.. +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998862 334555666655554433322221 11 4555555555566678888999999999999999
Q ss_pred HHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037510 355 VLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCV 434 (806)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 434 (806)
+|+++.+. +++..+|+.++.++.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+. .
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-H 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C
Confidence 99999875 68999999999999999999999999999998753 37888999999999999999999999999865 3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 435 CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTL 514 (806)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (806)
+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++..+.+.|++++|.++|+++.+.+ +.+..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4578899999999999999999999999998763 4568899999999999999999999999999875 5678999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC--Hh
Q 037510 515 SDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM----GLYPN--IV 588 (806)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~--~~ 588 (806)
+.+|.+.|++++|.++|+.+. .. .+.+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSY---------AL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH---------HH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH---------Hh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 999999999999999999983 22 2346889999999999999999999999999876 66787 78
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|...++++.+.++
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999875 55889999999999999999999999999998753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=366.36 Aligned_cols=522 Identities=13% Similarity=0.025 Sum_probs=369.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
..+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++.... |+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHH
Confidence 344555555555554432 3567778888888888888888888888877533 5667777788888888888888
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
..+|+++.. .+++..+++.++.+|.+.|++++|.++|+++.. +.. ....+.+.+ -..
T Consensus 137 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~-----------~~~ 193 (597)
T 2xpi_A 137 KCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLL-----------MQD 193 (597)
T ss_dssp HHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC-------------------------CCC
T ss_pred HHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----ccccccccc-----------ccc
Confidence 888877753 245677777777778788888888777774211 110 000000000 012
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH--HH-HHHHHHcCCCCCh
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL--HL-WLMMLKRCVCPNE 438 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~ 438 (806)
.+.+++..+|+.++.+|.+.|++++|.+.|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 234556777888888888888888888888888775321 3334444444333322222111 11 3344443334445
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037510 439 VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGY 518 (806)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (806)
.+|..++..|.+.|++++|.++|+++.+. +++..+++.++..+.+.|++++|..+|+++.+.+ +.+..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 56666777888888888888888888765 5788888888888888888888888888888765 44677788888888
Q ss_pred HhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 519 CKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC 598 (806)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 598 (806)
.+.|++++|..+++.+ .. ..+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.
T Consensus 350 ~~~g~~~~A~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 350 HESGEKNKLYLISNDL---------VD-RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp HHHTCHHHHHHHHHHH---------HH-HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH---------Hh-hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888888888877 32 234567788888888888888888888888887752 335778899999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDE 678 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (806)
+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..+
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------- 472 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ------------------------- 472 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------
Confidence 9999999999999998764 45778888999999999999999999999887542
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 679 SARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++.++++.+.
T Consensus 473 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 473 -------YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999999875 56787 568999999999999999999999999885
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHhh
Q 037510 753 NLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV-VTYNILIDGY 803 (806)
Q Consensus 753 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 803 (806)
+ ..+..+|..++.+|.+.|++++|.++++++.+ +.|+. ..|..+-..|
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 4 33788899999999999999999999999988 66764 4555554444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-26 Score=242.72 Aligned_cols=318 Identities=19% Similarity=0.177 Sum_probs=165.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 037510 404 VTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGL 483 (806)
Q Consensus 404 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 483 (806)
.+|..+...+.+.|++++|...|+++++.. +.+..++..++.++.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 334444444444444444444444443321 1122334444444444444444444444444332 12233344444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
...|++++|...|+++.+.. +.+..+|..+...+...|++++|...++++. ... +.+...+..+...+.
T Consensus 146 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---------TLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------HHC-TTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------hcC-CCcHHHHHHHHHHHH
Confidence 44555555555555554442 2234455555555555555555555555441 111 122344444555555
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANI 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 643 (806)
..|++++|...+++..+.. +.+..++..+..++...|++++|.+.|+++++.+ +.+..++..++.++.+.|++++|..
T Consensus 215 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554431 2234555666666666666666666666666542 2245566666666666666666666
Q ss_pred HHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 644 FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
.++++++..+ .+..+++.++..+...|++++|...++++.+ ..|+.
T Consensus 293 ~~~~al~~~p--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 338 (388)
T 1w3b_A 293 CYNTALRLCP--------------------------------THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEF 338 (388)
T ss_dssp HHHHHHHHCT--------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTC
T ss_pred HHHHHHhhCc--------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCc
Confidence 6666665431 2455666666666666666666666666666 44543
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC
Q 037510 724 -FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG 772 (806)
Q Consensus 724 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 772 (806)
.++..++.+|.+.|++++|++.|+++++ +.| +...|..+...+...|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 3666666666666666666666666665 344 3445555555555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-26 Score=241.05 Aligned_cols=383 Identities=14% Similarity=0.039 Sum_probs=333.7
Q ss_pred HHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 037510 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 207 (806)
+...+.+.|++++|++.++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34567889999999999999988754 366778888889999999999999999988753 4578899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
+++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 34577899999999999999999999999998764 3566788889999999999999999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 288 MKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 288 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
+.+. .+.+..+|..+...+.+.|++++|...|+++.+.++. +...+..+...+...|++++|...|++..... +.+
T Consensus 161 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 161 AIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9886 3446788999999999999999999999999987543 67789999999999999999999999988764 446
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDI 447 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (806)
..++..+...+.+.|++++|.+.++++.+.+. .+..+|..+...+.+.|++++|...++++++. .+.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHH
Confidence 78899999999999999999999999998642 25678999999999999999999999999987 35578899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037510 448 LFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVG 522 (806)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 522 (806)
+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...|..+...+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 999999999999999999863 4567889999999999999999999999999864 446777887777776655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=261.48 Aligned_cols=205 Identities=13% Similarity=0.170 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHCCCCCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 037510 570 SLVDLLAEMQTMGLYPNIV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK---------ID 639 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 639 (806)
.+..+.+++.+++..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455667777777665543 5788899999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
+|.++|++|...|+.| |..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 88 ~A~~lf~~M~~~G~~P-------------------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVP-------------------------------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHHHHHHHHHTTCCC-------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCC-------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 8999999999998765 899999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.||..||+.|+.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.|++++|.+++++|.+.|..|+..||+.|
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 037510 800 IDGYCK 805 (806)
Q Consensus 800 i~~~~~ 805 (806)
++.|++
T Consensus 217 ~~~F~s 222 (501)
T 4g26_A 217 EEWFKS 222 (501)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 998875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=261.06 Aligned_cols=185 Identities=16% Similarity=0.185 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHcCCCCChhhH
Q 037510 195 CSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD---------LNGAKRVLEWTCEKGISRTAVTY 265 (806)
Q Consensus 195 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 265 (806)
++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 037510 266 TTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCK 345 (806)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 345 (806)
++||.+|++.|++++|.++|++|.+. |+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555554 45555555555555555555555555555555555555555555555555555
Q ss_pred cCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHh
Q 037510 346 LGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCR 380 (806)
Q Consensus 346 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 380 (806)
.|+.++|.++|++|.+.++.|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=230.96 Aligned_cols=453 Identities=13% Similarity=0.044 Sum_probs=309.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLIN 341 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 341 (806)
...+..+...+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++++.+.++ .+...+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 4556667777777777777777777777652 5677777777777777777777777777776543 25567777777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 342 GYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
+|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------- 152 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK-------- 152 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH--------
Confidence 7777777777777777776654 3444444444444444333333333333333332222222111110000
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK---MGKMTEAQKIFDK 498 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~ 498 (806)
......|+.......+..+...... . ....+.+...+......+.. .|++++|...+++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 153 --------DKQENLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred --------hhccCCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 0001112222111111111000000 0 00002234444444444444 7889999999998
Q ss_pred HHH-----cCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhc
Q 037510 499 MKE-----LGC--------LPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKS 565 (806)
Q Consensus 499 ~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 565 (806)
+.+ ... +.+..++..+...+...|++++|...++.+ .... |+...+..++..+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---------l~~~--~~~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA---------IELF--PRVNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH---------HHHC--CCHHHHHHHHHHHHTS
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HhhC--ccHHHHHHHHHHHHHC
Confidence 887 311 223567888889999999999999999987 3333 2378888899999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 566 RELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFL 645 (806)
Q Consensus 566 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 645 (806)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998763 3456788889999999999999999999999864 346778889999999999999999999
Q ss_pred HHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--
Q 037510 646 QKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-- 723 (806)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-- 723 (806)
+++.+..+ .+..++..++..|...|++++|...++++.+ ..|+.
T Consensus 362 ~~~~~~~~--------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~ 407 (514)
T 2gw1_A 362 SEAKRKFP--------------------------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDG 407 (514)
T ss_dssp HHHHHHST--------------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTSSS
T ss_pred HHHHHHcc--------------------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccch
Confidence 99987642 2566888999999999999999999999988 34443
Q ss_pred -----HhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 724 -----FTYSTLIHGYAA---VGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 724 -----~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
.+|..++..|.. .|++++|++.++++++. .| +..++..++.+|.+.|++++|..+++++.+ +.|+..
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 288999999999 99999999999999984 45 677888999999999999999999999988 667654
Q ss_pred hH
Q 037510 795 TY 796 (806)
Q Consensus 795 ~~ 796 (806)
..
T Consensus 484 ~~ 485 (514)
T 2gw1_A 484 EK 485 (514)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-23 Score=226.84 Aligned_cols=458 Identities=12% Similarity=0.024 Sum_probs=329.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 037510 226 NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLI 305 (806)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 305 (806)
....+......+.+.|++++|...|+++.+.+ |+..+|..+..++.+.|++++|+..++++.+. .+.+..++..+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 35677888899999999999999999999976 68999999999999999999999999999986 345678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHH
Q 037510 306 DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMT 385 (806)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (806)
.++.+.|++++|...|+++.+.+. ++......++..+.+......+.+.+..+...+..|+...++.-.....
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------ 153 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD------ 153 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh------
Confidence 999999999999999999999864 3555555666666555555555555544444333333322221110000
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHH
Q 037510 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN---KGDFYGAVKLWN 462 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 462 (806)
.....|+.......+..+....... ....+.+...+......+.. .|++++|+..|+
T Consensus 154 ----------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 154 ----------KQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred ----------hccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 0011222221111111111000000 00001223344444444444 788888888888
Q ss_pred HHHH-----CCC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037510 463 NILA-----RGF--------YKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFK 529 (806)
Q Consensus 463 ~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 529 (806)
++.+ ... +.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 8776 210 2245677788888999999999999999998875 338888889999999999999999
Q ss_pred HHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 037510 530 IKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKA 609 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 609 (806)
.++.+. .. .+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 292 ~~~~~~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 292 YFDKAL---------KL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HHHHHH---------TT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHh---------hc-CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998872 22 23356788889999999999999999999998864 33567888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH
Q 037510 610 YFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV 689 (806)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (806)
++++.+.. +.+...+..++..+.+.|++++|...++++.+...... ...-...
T Consensus 361 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~ 413 (514)
T 2gw1_A 361 FSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--------------------------GIYVGIA 413 (514)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--------------------------SCSSCSH
T ss_pred HHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--------------------------hHHHHHH
Confidence 99999863 44677888999999999999999999999886532210 0001144
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 690 VYNIVIAGICK---SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 690 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
++..++.++.. .|++++|...|+++.+ ..|+. .++..++.+|.+.|++++|.+.|+++++ +.|+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 88899999999 9999999999999999 56764 5889999999999999999999999999 45643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-21 Score=208.17 Aligned_cols=338 Identities=11% Similarity=0.034 Sum_probs=206.1
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 317 AIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
+...+.++.... +.+...+..++..|.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444332 2345566666666666666666666666665542 44556666666666666666666666666665
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 037510 397 QGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNE---VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT 473 (806)
Q Consensus 397 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (806)
.+. .+..++..+...+.+.|++++|...|+++.+.. +.+. ..+..++..+..
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------
Confidence 532 234555566666666666666666666665542 1122 333333322110
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHH
Q 037510 474 ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSID 553 (806)
Q Consensus 474 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (806)
..+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...++.+. .. .+.+..
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~~ 212 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS---------KL-KNDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH---------HH-HCSCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---------Hh-CCCCHH
Confidence 011223444666777777777777777654 4466677777777777777777777777662 11 123456
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCC
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGAL------------ISGWCDAGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~ 620 (806)
++..++..+...|++++|...++++.+. .|+ ...+..+ ...+.+.|++++|...|+++++. .|
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p 288 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EP 288 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 6777777777777777777777777654 232 3333333 66777788888888888888775 23
Q ss_pred C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 621 N-----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 621 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
+ ...+..++.++.+.|++++|...++++++..+ .+..+|..++
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--------------------------------~~~~~~~~l~ 336 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--------------------------------DNVNALKDRA 336 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------------------ccHHHHHHHH
Confidence 3 34667777788888888888888888776532 2566778888
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHH
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLI 730 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 730 (806)
.+|...|++++|...|+++++ +.|+.. ++..+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 888888888888888888887 667653 555555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=215.05 Aligned_cols=451 Identities=13% Similarity=0.063 Sum_probs=279.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID 306 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 306 (806)
...+..+...+.+.|++++|...|+++.+..+ .+..+|..+..+|.+.|++++|++.|+++.+. .+.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 45566666667777777777777777766543 35666666677777777777777777766654 2334556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCH
Q 037510 307 GYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDM 384 (806)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 384 (806)
.+...|++++|...|+ ....... .....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGD----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 6666666666666664 2222111 11122333344444455666665554421 011111122233333334444
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 385 TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNI 464 (806)
Q Consensus 385 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (806)
+.+...+..... .+. .+..+..++.... .. . ........|++++|..+++++
T Consensus 177 ~~~~~~~~~~~~----~~~-~~~~~~~~l~~~~-------------~~----~------~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 177 HLEVSSVNTSSN----YDT-AYALLSDALQRLY-------------SA----T------DEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HHHHHTSCCCCS----SCS-SHHHHHHHHHHHH-------------TC----S------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc----ccc-HHHHHHHHHHHHH-------------Hh----h------hhhhHHHHHHHHHHHHHHHHH
Confidence 333332222111 011 1111111111000 00 0 000011123566666666666
Q ss_pred HHCCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 037510 465 LARGFYKN-------TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERR 537 (806)
Q Consensus 465 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (806)
.+.. +.+ ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.
T Consensus 229 l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 303 (537)
T 3fp2_A 229 LSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV-- 303 (537)
T ss_dssp HC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH--
T ss_pred HHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh--
Confidence 6543 112 2245556667777888888888888888764 557777888888888888888888888762
Q ss_pred ccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 037510 538 EILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG 617 (806)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 617 (806)
.. .+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 304 -------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 304 -------DL-NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp -------HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------cc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 12356778888888888888888888888888753 2346778888999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 618 FSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 618 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
+.+...+..++..+...|++++|...++++++..+... ........+..+..+
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE--------------------------KIHVGIGPLIGKATI 427 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS--------------------------SCSSTTHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch--------------------------hhHHHHHHHHHHHHH
Confidence 44677888999999999999999999999886532110 001122335556677
Q ss_pred HHhc----------CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 698 ICKS----------GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 698 ~~~~----------g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+... |++++|...|+++.+ ..|+. .++..++.+|.+.|++++|++.|+++++. .|+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 495 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTM 495 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--C
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCc
Confidence 7887 999999999999999 56765 58999999999999999999999999994 4543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-21 Score=206.55 Aligned_cols=330 Identities=11% Similarity=0.035 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHH
Q 037510 279 EEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRC 358 (806)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (806)
..+...+...... .+.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..++.+|...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQ--SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccc--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444455555443 34567789999999999999999999999999864 34788999999999999999999999999
Q ss_pred HhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-c---chHHHHHHH------------HHhcCCHHHH
Q 037510 359 MGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPS-V---VTYNTLLKG------------LCRVGDVDEA 422 (806)
Q Consensus 359 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~ll~~------------~~~~~~~~~a 422 (806)
+.+.+ +.+..++..+...+.+.|++++|.+.|+++.+.. |+ . ..+..+... +...|++++|
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98875 5568889999999999999999999999999863 43 3 455555443 4455555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 423 LHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL 502 (806)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 502 (806)
...++.+.+.. +.+...+..++.+|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555431 2244445555555555555555555555554432 223444555555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 037510 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG 582 (806)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 582 (806)
. +.+...+..+... .. ......++..+.+.|++++|...++++.+.
T Consensus 241 ~-p~~~~~~~~~~~~--------------~~------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~- 286 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQV--------------KK------------------LNKLIESAEELIRDGRYTDATSKYESVMKT- 286 (450)
T ss_dssp C-TTCHHHHHHHHHH--------------HH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred C-CChHHHHHHHHHH--------------HH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 2 1112211111100 00 001223478889999999999999999885
Q ss_pred CCCC-----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037510 583 LYPN-----IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 583 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 652 (806)
.|+ ...+..+...+.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...++++++..
T Consensus 287 -~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 287 -EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred -CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 344 3478888999999999999999999999863 4478999999999999999999999999999865
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=214.93 Aligned_cols=436 Identities=13% Similarity=0.040 Sum_probs=296.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLIN 341 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 341 (806)
...|..+...+.+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|.+.++++.+.++. +...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 455666677777777777777777777665 2345666777777777777777777777777665432 5566666777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcchHHHHHHHHHhcCCH
Q 037510 342 GYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG--IEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~ 419 (806)
.+...|++++|...|+.+.. .|+. ....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 77777777777777753322 1221 1122333344444556666666654421 001111122223333333333
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH-HHHHHHHHH--------HHhcCCHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT-ITFNTMIKG--------LCKMGKMT 490 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~--------~~~~g~~~ 490 (806)
+.+...+.. .... .+.. .....+... ....|+++
T Consensus 177 ~~~~~~~~~-----------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 177 HLEVSSVNT-----------------------------------SSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHHTSCC-----------------------------------CCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhh-----------------------------------cccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 333222211 1110 0110 011111111 12235789
Q ss_pred HHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 491 EAQKIFDKMKELGCLPNI-------ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 491 ~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
+|...++++.+.. +.+. .++..+...+...|++++|...++.+ ... .|+...+..+...+.
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~---------~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES---------INL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHH--CCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH---------Hhc--CCCchHHHHHHHHHH
Confidence 9999999998865 2232 35677778889999999999999987 332 355788888999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANI 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 643 (806)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+...+..+..++...|++++|..
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998863 3467789999999999999999999999999864 3456788999999999999999999
Q ss_pred HHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 644 FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
.++++.+..+ .+..++..++..+...|++++|...|+++.+. .|+.
T Consensus 366 ~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~ 411 (537)
T 3fp2_A 366 FFNETKLKFP--------------------------------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQ 411 (537)
T ss_dssp HHHHHHHHCT--------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHC
T ss_pred HHHHHHHhCC--------------------------------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCcc
Confidence 9999987642 25678899999999999999999999999874 3322
Q ss_pred -------HhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 724 -------FTYSTLIHGYAAV----------GDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 724 -------~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
..+..++.++... |++++|+..|+++++. .| +...+..++.+|.+.|++++|.++++++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1355667788888 9999999999999984 45 67789999999999999999999999998
Q ss_pred HCCCCCCHh
Q 037510 786 QKGLTPTVV 794 (806)
Q Consensus 786 ~~g~~p~~~ 794 (806)
+ +.|+..
T Consensus 490 ~--~~~~~~ 496 (537)
T 3fp2_A 490 I--LARTMD 496 (537)
T ss_dssp H--HC--CH
T ss_pred H--hCCCcH
Confidence 8 555533
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-17 Score=184.37 Aligned_cols=643 Identities=14% Similarity=0.151 Sum_probs=329.5
Q ss_pred ChHHHHHHHHh-cCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCc-------
Q 037510 33 SDDLLDSVLQK-LRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAG------- 104 (806)
Q Consensus 33 ~~~~~~~vl~~-~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~------- 104 (806)
+|+.+ .+|.. ++.+|+.|..|-.-+.+..+ .......++.++...+...++.++|.+.++..+.....
T Consensus 511 ~pDy~-~ll~~~~~~~P~~~~~fa~~L~~~~~---p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle 586 (1630)
T 1xi4_A 511 TPDWI-FLLRNVMRISPDQGQQFAQMLVQDEE---PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLE 586 (1630)
T ss_pred CccHH-HHHHHHhhcChHHHHHHHHHHhcCCC---CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHH
Confidence 45544 23333 36789999998887764433 34567889999999999999999998887653221110
Q ss_pred ------hhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhc--CCCcC-hhhHHHHHHHHHHcCChHH
Q 037510 105 ------FLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKY--GCIPS-LRSCNCLLSNLVKNGEGYV 175 (806)
Q Consensus 105 ------~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~~~~~~ 175 (806)
+.+-+.++. ..-++..-...+...|-++|.++.|++.|..+... -+..+ ...-.. +..|...=..+.
T Consensus 587 ~Nl~~~pqvadail~---~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~-l~~~fg~l~~~~ 662 (1630)
T 1xi4_A 587 MNLMHAPQVADAILG---NQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEW-LVNYFGSLSVED 662 (1630)
T ss_pred HhhccchhHHHHHHh---cCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHH-HHHHHhcCCHHH
Confidence 111111111 11223344456778899999999999999855432 11101 111122 333444466799
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-----------CCCcCHHHHHHHHHHHHhCCCHH
Q 037510 176 ALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL-----------GFELNVVTYNSLIDGYVSLGDLN 244 (806)
Q Consensus 176 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~ 244 (806)
+++.+++|++.++..|....-.+..-|...=-.+...++|++-... ...-|..+....|.++++.|++.
T Consensus 663 s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~ 742 (1630)
T 1xi4_A 663 SLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIK 742 (1630)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCch
Confidence 9999999998665554433222222222222233333333332211 23457888889999999999988
Q ss_pred HHHHHHHH------------HHHcCCCCChhh----------HHHHHHHHHhcCCHHHHHHHH-------------HHHH
Q 037510 245 GAKRVLEW------------TCEKGISRTAVT----------YTTLTKGYCKQHKMEEAENML-------------RRMK 289 (806)
Q Consensus 245 ~A~~~~~~------------~~~~~~~~~~~~----------~~~li~~~~~~g~~~~a~~~~-------------~~~~ 289 (806)
+.+++.++ +++... +|... ..-|+.-+.+.+... -+++| -.+.
T Consensus 743 everi~res~~y~~e~vk~flk~~kl-~d~~pli~vCdr~~~v~~l~~yLy~n~~~~-~ie~yv~~vnp~~~p~Vvg~ll 820 (1630)
T 1xi4_A 743 EVERICRESNCYDPERVKNFLKEAKL-TDQLPLIIVCDRFDFVHDLVLYLYRNNLQK-YIEIYVQKVNPSRLPVVIGGLL 820 (1630)
T ss_pred hhhHHhccCCCCCHHHHHHHHhhCCC-CCCCCceeeccccccHHHHHHHHHhcCchh-HHHHHHhccCCcccchhhhhhh
Confidence 87766543 222222 12111 112222222222221 12222 1111
Q ss_pred hcCCCCCChHh-------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHH----
Q 037510 290 EEDDVIVDEYA-------------YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEA---- 352 (806)
Q Consensus 290 ~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---- 352 (806)
+. .-+... ...|+...-+.+++.--..+++.-+..|.. ++.++|+|+..|...++-.+.
T Consensus 821 d~---d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~ 896 (1630)
T 1xi4_A 821 DV---DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRE 896 (1630)
T ss_pred cC---CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhc
Confidence 11 011111 233334444455555555666766777754 788888888777754432111
Q ss_pred ---------------------HHHHHH------Hh----hCCC----------CCChhcH--------------------
Q 037510 353 ---------------------KRVLRC------MG----DWNL----------RPDSFSF-------------------- 371 (806)
Q Consensus 353 ---------------------~~~~~~------~~----~~~~----------~~~~~~~-------------------- 371 (806)
.-.|++ +. +.++ +.|...|
T Consensus 897 n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a 976 (1630)
T 1xi4_A 897 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQ 976 (1630)
T ss_pred cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 111100 00 0000 0011111
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 372 ------------NTLVDGYCRECDMTEAFRLCAEMLRQGI--EPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPN 437 (806)
Q Consensus 372 ------------~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 437 (806)
...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++..+.-.
T Consensus 977 ~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~------ 1049 (1630)
T 1xi4_A 977 TALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN------ 1049 (1630)
T ss_pred hhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh------
Confidence 2223334444444455555444442210 00111222233222222 22222222222211
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 438 EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDG 517 (806)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (806)
.....+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++. .+..+|..+..+
T Consensus 1050 -~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1050 -YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKA 1114 (1630)
T ss_pred -ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 0112244555566666666666666421 111112222 1445666666665533 235566666677
Q ss_pred HHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037510 518 YCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGW 597 (806)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 597 (806)
+...|++++|...|.+. .+...|..++..+.+.|++++|.+.+...++.. +++...+.++.+|
T Consensus 1115 ql~~G~~kEAIdsYiKA---------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHhCCCHHHHHHHHHhc---------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 77777777776666432 445556666666777777777777766655542 2322233466666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhH
Q 037510 598 CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
++.+++++ ++-| ++ .++...+..++..|...|++++|..+|..+.
T Consensus 1178 AKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------------- 1222 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------------- 1222 (1630)
T ss_pred HhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------
Confidence 66666653 2222 21 2344555566666666777777776666641
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
.|..++.+|++.|++++|++.+++. -+..+|..+..+|...|++..|...... +..+
T Consensus 1223 ------------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~ 1279 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 1279 (1630)
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcC
Confidence 5566666666666666666666655 2235666666666666666555554432 2334
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 758 IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 758 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+..++..|.+.|.+++|+.+++....
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45555666666777777777777766553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-16 Score=177.45 Aligned_cols=576 Identities=12% Similarity=0.124 Sum_probs=386.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCC--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 037510 119 AFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGC--IPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCS 196 (806)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 196 (806)
..+|+-....++.|...|.+.+|++++++..-.+. ..+....+.++....+. +..+..+...+.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 45677788999999999999999999999984321 13456778888777777 556666666665421 1 33
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQH 276 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (806)
.+...+...|.+++|..+|++.. -.....+.++ ...|++++|.++.++.. +..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 47778889999999999999963 1222233333 37889999999998662 5789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHH
Q 037510 277 KMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVL 356 (806)
Q Consensus 277 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (806)
++++|++.|.+. .|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 999999999664 267788999999999999999999999888764 34444556999999999988644443
Q ss_pred HHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 357 RCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCP 436 (806)
Q Consensus 357 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 436 (806)
+ .++...|..+...|...|++++|...|... ..|..+...+++.|+++.|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 456677888999999999999999999985 37999999999999999999999986 3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 437 NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSD 516 (806)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 516 (806)
+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +.....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 66899999999999999999999876543 356677799999999999999999999887765 445567777777
Q ss_pred HHHh--cCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----------CCC
Q 037510 517 GYCK--VGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQT-----------MGL 583 (806)
Q Consensus 517 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~g~ 583 (806)
.+++ .++..++.++|..- .-.|.+. ....+...|..++..|.+.|+++.|....-+-.. ...
T Consensus 1323 LyaKy~peklmEhlk~f~~r---ini~k~~--r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k 1397 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSR---VNIPKVL--RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 1397 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHh---cccchHh--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc
Confidence 7665 34555566655521 1111000 0113567789999999999999999843322110 011
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
..|+..|...+..|. +....++.-+...+...+.+ ...+..+.+.|.+..+..+++.....+...=. -...
T Consensus 1398 v~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD~-----~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vn--eal~ 1468 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN--ESLN 1468 (1630)
T ss_pred cccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCCh-----HHHHHHHHHcCChHHhHHHHHHHHHhcchhhh--HHHH
Confidence 345666666666665 23333333333333221111 33445555666666666666555433211100 0000
Q ss_pred hhhhh---HHHHHhhhHHhh--------hcCCCCChHHHHHHH-HHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 037510 664 AINVD---AQKIAMSLDESA--------RSLCVPNYVVYNIVI-AGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIH 731 (806)
Q Consensus 664 ~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 731 (806)
+..++ ....+..++... ...-+....-+.-+. ..|.+.|++++|.+++.+-.- |.--+.
T Consensus 1469 el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~ 1539 (1630)
T 1xi4_A 1469 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQ 1539 (1630)
T ss_pred HHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHH
Confidence 11111 111111111100 000011111122233 334455888888888776432 445667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 037510 732 GYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
...++|+.+.+.+++.-..+. -+...|.+.+..|...-+.+-+++
T Consensus 1540 ~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1540 YASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 778888888888888887774 345566666666665555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-18 Score=180.14 Aligned_cols=327 Identities=15% Similarity=0.114 Sum_probs=221.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 037510 405 TYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484 (806)
Q Consensus 405 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 484 (806)
.+..+...+...|++++|...|+.+++.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34445555555555555555555555532 2234455555555555555555555555555432 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHH
Q 037510 485 KMGKMTEAQKIFDKMKELGCLP----NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLIS 560 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
..|++++|...++++.+.. | +...+..+..... ...+..+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~--------------------------------~~~~~~~a~ 128 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE--------------------------------MQRLRSQAL 128 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH--------------------------------HHHHHHHHH
Confidence 5555555555555555432 2 1111111111100 001223467
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037510 561 VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDE 640 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 640 (806)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999998863 4467788899999999999999999999999863 5578899999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 037510 641 ANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFS 720 (806)
Q Consensus 641 A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 720 (806)
|...++++.+..+....... ....+ ........++..+.+.|++++|...++++.+ ..
T Consensus 207 A~~~~~~a~~~~~~~~~~~~-----------~~~~~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~ 264 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFA-----------HYKQV---------KKLNKLIESAEELIRDGRYTDATSKYESVMK--TE 264 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHH-----------HHHHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHhhCccchHHHH-----------HHHHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 99999999876533110000 00000 0011222447789999999999999999999 55
Q ss_pred CCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 721 PDNF-----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 721 p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
|+.. .+..++.+|...|++++|++.++++++. .| ++.++..++.+|.+.|++++|...++++.+ +.|+..
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 340 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ 340 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence 6643 3566889999999999999999999984 45 778999999999999999999999999998 678744
Q ss_pred h
Q 037510 795 T 795 (806)
Q Consensus 795 ~ 795 (806)
.
T Consensus 341 ~ 341 (359)
T 3ieg_A 341 Q 341 (359)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-17 Score=177.04 Aligned_cols=382 Identities=13% Similarity=0.037 Sum_probs=252.4
Q ss_pred ChhHHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCc
Q 037510 332 NLLICNSLINGYCK----LGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCR----ECDMTEAFRLCAEMLRQGIEPSV 403 (806)
Q Consensus 332 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~ 403 (806)
++..+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 566666666666655543 34455555555655 566666666666666543 34
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHH
Q 037510 404 VTYNTLLKGLCR----VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTIT 475 (806)
Q Consensus 404 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 475 (806)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555555 566667777776666653 45556666666665 667777777777776653 5556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcccChhhhhcC
Q 037510 476 FNTMIKGLCK----MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCK----VGNLEEAFKIKNLMERREILPSMEKEA 547 (806)
Q Consensus 476 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (806)
+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|...++.. ...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a---------~~~- 252 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS---------AEQ- 252 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------HTT-
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---------HHC-
Confidence 6666666666 677777777777777654 55666666666665 67777777777765 222
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCC
Q 037510 548 IVPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA-----GMLNKAFKAYFDMIEKGF 618 (806)
Q Consensus 548 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~ 618 (806)
.+...+..+...+.. .++.++|.+.|++..+.| +...+..+...|... +++++|+..|++..+.|
T Consensus 253 --~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~- 326 (490)
T 2xm6_A 253 --GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG- 326 (490)
T ss_dssp --TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-
T ss_pred --CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-
Confidence 234455566666666 677888888888877654 455666667777665 78888888888888764
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLG---KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
+...+..+...|...| ++++|..++++..+.+ ++..+..|.
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~Lg 370 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----------------------------------EKAAQFNLG 370 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----------------------------------CHHHHHHHH
Confidence 4566777777777756 7888888888888764 556788888
Q ss_pred HHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-C-ChhcHHHHH
Q 037510 696 AGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLV-P-NIATYNSLV 765 (806)
Q Consensus 696 ~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~ 765 (806)
..|.. .+++++|...|++..+.| +..++..|+..|.. .+++++|...|+++.+.+.. | ++.....|.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 88887 788999999999988854 45677888888887 78999999999998886533 2 334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~ 785 (806)
..+.. +.++|.+...+..
T Consensus 448 ~~~~~--~~~~a~~~a~~~~ 465 (490)
T 2xm6_A 448 KLTAK--QLQQAELLSQQYI 465 (490)
T ss_dssp TSCHH--HHHHHHHHHHHHH
T ss_pred hcCHh--HHHHHHHHHHHHH
Confidence 33332 2344444444433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=173.06 Aligned_cols=331 Identities=12% Similarity=0.030 Sum_probs=202.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLID 235 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 235 (806)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777777888888888888888777643 2346677777777777788888888877777653 335667777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 236 GYVSLGDLNGAKRVLEWTCEKGIS--RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
.+...|++++|...++++.+..+. .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 777777777777777777764320 12333333311000 0011122344455555
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAE 393 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 393 (806)
+++|...++++.+..+ .+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++
T Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554432 244455555555555555555555555555442 33445555555555555555555555555
Q ss_pred HHHCCCCCCc-chH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhH
Q 037510 394 MLRQGIEPSV-VTY------------NTLLKGLCRVGDVDEALHLWLMMLKRCVCPNE----VGYCTLLDILFNKGDFYG 456 (806)
Q Consensus 394 m~~~g~~~~~-~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 456 (806)
..+.. |+. ..+ ..+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++
T Consensus 214 a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 55432 221 111 12355677788888888888887775322 22 234456778888888888
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 457 AVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 457 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+..
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 888888887763 4467778888888888888888888888888764 334555655555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-16 Score=170.85 Aligned_cols=366 Identities=14% Similarity=0.012 Sum_probs=308.3
Q ss_pred HHHHHHHHhhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCCHHHHH
Q 037510 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCR----ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCR----VGDVDEAL 423 (806)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~ 423 (806)
+...++...+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455555555533 67778888888887 899999999999998874 56778888888988 89999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHH
Q 037510 424 HLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK----MGKMTEAQKI 495 (806)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~ 495 (806)
..|++..+.| +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|...
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998874 66778888889988 889999999999999875 56677788888877 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHh----cCC
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCK----VGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK----SRE 567 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 567 (806)
|++..+.| +...+..+...|.. .+++++|.+.|++. ... .+...+..+...|.. .++
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a---------~~~---~~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS---------ATS---GDELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------HHT---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH---------HHC---CCHHHHHHHHHHHHcCCCCCCC
Confidence 99999875 78888899999988 89999999999987 333 355677788888886 789
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCH
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL-----GKI 638 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~ 638 (806)
.++|...|++..+.| +...+..+...|.. .++.++|++.|++..+.| +...+..+...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998864 45667777777776 899999999999998764 566778888888887 899
Q ss_pred HHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC---ChhhHHHHHHHHH
Q 037510 639 DEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG---NVTDARRIFSALL 715 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 715 (806)
++|...+++..+.+ +...+..+...|...| ++++|++.|++..
T Consensus 313 ~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 313 EQAISWYTKSAEQG----------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 99999999998875 4457888888888766 7899999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 037510 716 LTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQK 787 (806)
Q Consensus 716 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 787 (806)
+. .+..++..|+..|.. .+++++|++.|+++.+.| ++..+..|...|.+ .++.++|..+|++..+.
T Consensus 359 ~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 359 AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 95 356788899999998 899999999999999865 57788889999998 89999999999999986
Q ss_pred CCC
Q 037510 788 GLT 790 (806)
Q Consensus 788 g~~ 790 (806)
|..
T Consensus 433 ~~~ 435 (490)
T 2xm6_A 433 DMN 435 (490)
T ss_dssp HCC
T ss_pred CCC
Confidence 543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-18 Score=172.83 Aligned_cols=299 Identities=12% Similarity=0.012 Sum_probs=218.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLS 515 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (806)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555666666666677777777777666553 3344555556666777777777777777777654 34566677777
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 516 DGYCKVG-NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALI 594 (806)
Q Consensus 516 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 594 (806)
..+...| ++++|...++... .. .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 166 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT---------TL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIG 166 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH---------TT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH---------Hh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence 7777777 7777777777662 11 12245667777777788888888888888777653 22455677788
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
..+...|++++|.+.++++++.. +.+...+..++..+...|++++|...++++.+......
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------ 227 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG------------------ 227 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc------------------
Confidence 88899999999999999998763 45678888999999999999999999999886421100
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
.....+.+..++..++.+|...|++++|...++++.+ ..|+. .+|..++.+|...|++++|.+.++++++
T Consensus 228 -----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 298 (330)
T 3hym_B 228 -----NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG-- 298 (330)
T ss_dssp -----CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--
T ss_pred -----ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--
Confidence 0000123467899999999999999999999999998 56765 5899999999999999999999999988
Q ss_pred CCC-ChhcHHHHHHHH-HhcCCHH
Q 037510 754 LVP-NIATYNSLVSGL-CNSGELD 775 (806)
Q Consensus 754 ~~p-~~~~~~~l~~~~-~~~g~~~ 775 (806)
+.| +...+..+..++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 556 677888888888 5666643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-17 Score=167.95 Aligned_cols=287 Identities=13% Similarity=0.020 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 037510 229 TYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGY 308 (806)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 308 (806)
.+..+...+...|++++|.++|+++.+..+ .+...+..++..+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYY 100 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHH
Confidence 344444444444555555555555444332 23334444444445555555555555554443 122334444444555
Q ss_pred HhcC-ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHH
Q 037510 309 CKVG-KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEA 387 (806)
Q Consensus 309 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 387 (806)
...| ++++|...|+++.+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 5555 555555555555444321 34445555555555555555555555544432 22334444455555555555555
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCChhHHHH
Q 037510 388 FRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRC--------VCPNEVGYCTLLDILFNKGDFYGAVK 459 (806)
Q Consensus 388 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (806)
.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555432 1233445555555555556666655555555421 12234566666667777777777777
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC
Q 037510 460 LWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGY-CKVGN 523 (806)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 523 (806)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 777666653 3355666777777777777777777777776654 34566666666665 33444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-16 Score=168.62 Aligned_cols=429 Identities=9% Similarity=0.051 Sum_probs=244.5
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037510 250 LEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL 329 (806)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (806)
|++..+..+ -+..+|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 455555543 47788988888 47889999999999999876 55577788999999999999999999999998864
Q ss_pred CCChhHHHHHHHHH-HhcCCHhHHHH----HHHHHhh-CCCCC-ChhcHHHHHHHHHh---------cCCHHHHHHHHHH
Q 037510 330 EMNLLICNSLINGY-CKLGQVCEAKR----VLRCMGD-WNLRP-DSFSFNTLVDGYCR---------ECDMTEAFRLCAE 393 (806)
Q Consensus 330 ~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~ 393 (806)
|+...|...+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|++++|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4666777766533 35677777665 6665543 24333 45667777665544 5778888888888
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH------HHHC
Q 037510 394 MLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNN------ILAR 467 (806)
Q Consensus 394 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~ 467 (806)
.++. |... ...+...+.. ++... +..+...++. .+.+++..|..++.+ ..+.
T Consensus 156 al~~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVN---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTS---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhc---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 8762 3221 1111111111 00000 0000001110 123445566655554 2222
Q ss_pred C---CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------c
Q 037510 468 G---FYKN--------TITFNTMIKGLCKM----GKM----TEAQKIFDKMKELGCLPNIITYRTLSDGYCK-------V 521 (806)
Q Consensus 468 ~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~ 521 (806)
. ++|+ ...|...+...... ++. +.+..+|+++.... +.+...|...+..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 2332 24555555433322 222 47778899888764 5578888888888775 6
Q ss_pred CChH-------HHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H-hHHHH
Q 037510 522 GNLE-------EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-I-VTYGA 592 (806)
Q Consensus 522 g~~~-------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~-~~~~~ 592 (806)
|+++ +|..+++.. ...-.+.+...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..
T Consensus 293 g~~~~a~~~~~~A~~~~~~A---------l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERA---------ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHH---------TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHH---------HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 8877 777777765 22112234566666666666666777777766666664 333 1 35555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 593 LISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST-LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 593 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
++..+.+.|++++|.++|+++++.. +.+...+...+.. +...|+.++|..+|++.++..+
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p------------------ 422 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------------------ 422 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC------------------
Confidence 5555555666666666666665531 1122222221111 2235555666666655554321
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG-FSPD--NFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.++..|..++..+.+.|+.++|..+|++.++.+ ..|+ ...|...+......|+.+.+..++++
T Consensus 423 --------------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 423 --------------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp --------------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 134455555555555555556666665555531 1222 12444445555555555555555555
Q ss_pred HHH
Q 037510 749 MLK 751 (806)
Q Consensus 749 ~~~ 751 (806)
+.+
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-16 Score=168.25 Aligned_cols=431 Identities=11% Similarity=-0.007 Sum_probs=287.8
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 037510 285 LRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364 (806)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 364 (806)
|++..+. .+-|...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++....
T Consensus 2 le~al~~--~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhh--CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 3444443 2446778888887 477889999999999988763 346778888888888899999999999988876
Q ss_pred CCChhcHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHHH
Q 037510 365 RPDSFSFNTLVDGY-CRECDMTEAFR----LCAEMLRQ-GIEPS-VVTYNTLLKGLCR---------VGDVDEALHLWLM 428 (806)
Q Consensus 365 ~~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~-g~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~ 428 (806)
.|+...|..++... ...|+.++|.+ +|++.+.. |..|+ ...|...+....+ .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 36777777666533 34566666554 66665543 44443 3455555554443 5677778888877
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHc
Q 037510 429 MLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKM------KEL 502 (806)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~ 502 (806)
.+.....+....|..........|. .+...++. ...+++..|..++... .+.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7762111001222221111000000 01111111 1234566676666552 222
Q ss_pred C---CCCC--------HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 503 G---CLPN--------IITYRTLSDGYCKV----GNL----EEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 503 ~---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
. ++|+ ...|...+...... ++. +.+..+|+.. ... .+.+...|..++..+.
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a---------l~~-~p~~~~~w~~~~~~~~ 283 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC---------LLV-LGHHPDIWYEAAQYLE 283 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH---------HHH-HTTCHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH---------HHh-CCCCHHHHHHHHHHHH
Confidence 1 2444 24555554433222 222 3666777776 222 2346778888888777
Q ss_pred h-------cCCHh-------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-H-HHHHH
Q 037510 564 K-------SRELT-------SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-V-AICSK 627 (806)
Q Consensus 564 ~-------~~~~~-------~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~ 627 (806)
+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..
T Consensus 284 ~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 284 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 5 78887 89999999886322345778899999999999999999999999985 453 3 58888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH-HHhcCChhh
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG-ICKSGNVTD 706 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 706 (806)
++..+.+.|++++|..+|+++++.... +...|...+.. +...|+.++
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~--------------------------------~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDART--------------------------------RHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTC--------------------------------CTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCC--------------------------------chHHHHHHHHHHHHHcCChhH
Confidence 899899999999999999999876321 22233322222 346899999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--hhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN-LVPN--IATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
|..+|++.++ ..|+. ..|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+.++.+
T Consensus 410 A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 410 AFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998 56764 589999999999999999999999999853 1222 2367777777888999999999999
Q ss_pred HHHHCCCCC
Q 037510 783 KLRQKGLTP 791 (806)
Q Consensus 783 ~m~~~g~~p 791 (806)
++.+ ..|
T Consensus 488 r~~~--~~p 494 (530)
T 2ooe_A 488 RRFT--AFR 494 (530)
T ss_dssp HHHH--HTH
T ss_pred HHHH--HCc
Confidence 9877 455
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-18 Score=175.00 Aligned_cols=305 Identities=12% Similarity=0.027 Sum_probs=188.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCC-C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 037510 412 GLCRVGDVDEALH-LWLMMLKRCVC-P--NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMG 487 (806)
Q Consensus 412 ~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 487 (806)
++...|++++|.. .+++....... | +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444555566555 55544332110 1 23345555555555555555555555555542 334445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC
Q 037510 488 KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567 (806)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
++++|...++++.+.. +.+..++..+...+...|++++|...++.+. ... +.+...+..+...
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~~~~~~~------ 175 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL---------RYT-PAYAHLVTPAEEG------ 175 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HTS-TTTGGGCC-----------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhC-cCcHHHHHHHHHH------
Confidence 5555555555555543 3344555555555555555555555555441 111 0011111000000
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP-NVAICSKLVSTLCRLGKIDEANIFLQ 646 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 646 (806)
... ..+ ...+.. +..+...|++++|...++++++..... +..++..++..+...|++++|...++
T Consensus 176 -----------~~~-~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 176 -----------AGG-AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp -----------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------hhh-hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000 000 001112 233338899999999999999864221 58889999999999999999999999
Q ss_pred HHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-Hh
Q 037510 647 KMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FT 725 (806)
Q Consensus 647 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~ 725 (806)
++++..+ .+..++..++.++...|++++|+..|+++++ ..|+. .+
T Consensus 242 ~al~~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~ 287 (368)
T 1fch_A 242 AALSVRP--------------------------------NDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRS 287 (368)
T ss_dssp HHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHhCc--------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 9987642 2567899999999999999999999999998 56764 58
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------hhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVPN------------IATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
+..++.+|.+.|++++|+..|+++++. .|+ ..+|..++.+|.+.|+.++|..++++.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999999999883 232 578999999999999999999987753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-17 Score=169.84 Aligned_cols=305 Identities=12% Similarity=-0.036 Sum_probs=163.5
Q ss_pred HHHcCChhhHHH-HHHHhhhcCCC---cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 037510 132 YAQKGMLKNALH-VFDNMGKYGCI---PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 132 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 207 (806)
+...|++++|++ .|+...+.... .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 88876654322 135578888888888899999999888888764 3366778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
+++|...++++.+.. +.+..++..+...|...|++++|...++++....+. +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 888888888888765 446778888888888888888888888888876532 22222211000 00
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCC
Q 037510 288 MKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM-NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRP 366 (806)
Q Consensus 288 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 366 (806)
...+. ..+..+ ..+...|++++|...++++.+..+.. +..++..+...|...|++++|+..|++..+.. +.
T Consensus 178 -----~~~~~-~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -----GAGLG-PSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -----hhccc-HHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 00000 000011 11114444445555554444432211 24444444555555555555555555444432 22
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C
Q 037510 367 DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC----------P 436 (806)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 436 (806)
+..+|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...+++++..... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 34444555555555555555555555554432 113344455555555555555555555555442111 0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHH
Q 037510 437 NEVGYCTLLDILFNKGDFYGAVKLWN 462 (806)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (806)
...+|..+..+|...|++++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-17 Score=170.17 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.+..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..++.++.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555442 2344455555555555555555555555555443 233445555555555
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC---------CCHhHH
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY---------PNIVTY 590 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~---------p~~~~~ 590 (806)
..|++++|...++. +.+.... .....+
T Consensus 145 ~~g~~~~A~~~~~~--------------------------------------------al~~~p~~~~~~~~~~~~~~~~ 180 (365)
T 4eqf_A 145 NTSHQQDACEALKN--------------------------------------------WIKQNPKYKYLVKNKKGSPGLT 180 (365)
T ss_dssp HTTCHHHHHHHHHH--------------------------------------------HHHHCHHHHCC-----------
T ss_pred ccccHHHHHHHHHH--------------------------------------------HHHhCccchHHHhhhccchHHH
Confidence 55555555555544 4432100 112234
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFS-PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
..+...+...|++++|.+.++++++.... ++..++..++..+...|++++|...++++++..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------- 244 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---------------- 244 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------
Confidence 45677888999999999999999986422 1688999999999999999999999999987642
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.+..+|..++.+|...|++++|+..|+++++ ..|+. .+|..++.+|...|++++|+..|++
T Consensus 245 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 245 ----------------EDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3677999999999999999999999999999 66774 5899999999999999999999999
Q ss_pred HHHcCCCC-------------ChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 749 MLKINLVP-------------NIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 749 ~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
+++. .| +...+..|..++...|+.+.|.+..++
T Consensus 307 al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 307 ALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9983 22 257789999999999999999887665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-17 Score=161.46 Aligned_cols=347 Identities=15% Similarity=0.140 Sum_probs=142.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 037510 239 SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAI 318 (806)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 318 (806)
+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 55667777777776632 236777777777777777777777432 35556777777777777777777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 319 RVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG 398 (806)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 398 (806)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3346667777777777777777776663 356667777777777777777777777755
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHH
Q 037510 399 IEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNT 478 (806)
Q Consensus 399 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 478 (806)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 35777777777777777777777776 256777777777777777777755544322 22333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcccChhhhhcCCCC------
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKV--GNLEEAFKIKNLMERREILPSMEKEAIVP------ 550 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------ 550 (806)
++..|.+.|++++|..+++...... +.....|+.+.-.|++- ++..+.++.|. ..-.++|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~-----------~~ini~k~~~~~~ 280 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW-----------SRVNIPKVLRAAE 280 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-----------TTSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------HHhcCcHHHHHHH
Confidence 7777888888888888888877655 45566777776666653 33334444332 1122222
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...|..++..|.+.++++.|.... .+. +|+..--....+...+..+.+--.+...--++. .| ...+.|+.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~tm---~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~ 351 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLM 351 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHH---HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence 4567888888999999999887753 333 233222233333344555544322222222222 22 23555666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 037510 631 TLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~ 648 (806)
++...=+...+..+|++.
T Consensus 352 ~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 352 VLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHGGGCCHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHHHc
Confidence 665556666666666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=164.69 Aligned_cols=274 Identities=10% Similarity=-0.013 Sum_probs=221.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (806)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668899999999999999999999999873 3478899999999999999999999999999874 456888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPNII-TYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLIS 560 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
.+...|++++|...++++.+.. |+.. .+..+. .....+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~----------------------------------~~~~~~~~l~~ 185 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK----------------------------------GSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc----------------------------------cchHHHHHHHH
Confidence 9999999999999999998853 2211 111000 11233455677
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 561 VAFKSRELTSLVDLLAEMQTMGLY-PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
.+...|++++|...++++.+.... ++..++..+...|...|++++|++.|+++++.. +.+..++..++.+|...|+++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 888999999999999999986322 157889999999999999999999999999873 457889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
+|...++++++..+ .+..++..++.+|...|++++|...|+++++ +
T Consensus 265 ~A~~~~~~al~~~p--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 310 (365)
T 4eqf_A 265 EAVEAYTRALEIQP--------------------------------GFIRSRYNLGISCINLGAYREAVSNFLTALS--L 310 (365)
T ss_dssp HHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhcCC--------------------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 99999999988642 2577899999999999999999999999998 3
Q ss_pred CCC-------------HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 720 SPD-------------NFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 720 ~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.|+ ..+|..+..++...|+.+.+....++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 443 45899999999999999988877665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-16 Score=157.78 Aligned_cols=240 Identities=11% Similarity=0.089 Sum_probs=100.4
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALD 213 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 213 (806)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999883 3359999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037510 214 FVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDD 293 (806)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 293 (806)
+++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777764 4567888999999999999999988885 267779999999999999999999999876
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHH
Q 037510 294 VIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNT 373 (806)
Q Consensus 294 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 373 (806)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..|+ -...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 26899999999999999999999988 278899999999999999999966655432 2333 3456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 037510 374 LVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRV 416 (806)
Q Consensus 374 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 416 (806)
++..|.+.|++++|..+++..+... +.....|+-+.-++++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 8888888999999999988887543 23345566666666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-15 Score=161.64 Aligned_cols=396 Identities=12% Similarity=-0.002 Sum_probs=237.3
Q ss_pred CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC--------CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 037510 330 EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW--------NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ---- 397 (806)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 397 (806)
......||.|...+...|++++|++.|++..+. .-+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567888888899999999999999876432 11233567888888888889999988888877542
Q ss_pred -C-CCC-CcchHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHCCC
Q 037510 398 -G-IEP-SVVTYNTLLKGLCR--VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDI---LFNKGDFYGAVKLWNNILARGF 469 (806)
Q Consensus 398 -g-~~~-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 469 (806)
+ ..+ ...++..+..++.. .+++++|+..|++.++.. +.+...+..+..+ +...++.++|++.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 111 12345555545544 346788888888887753 2244445444444 344567778888888777653
Q ss_pred CCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhh
Q 037510 470 YKNTITFNTMIKGLCK----MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEK 545 (806)
Q Consensus 470 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (806)
+.+..++..+...+.. .|+.++|...+++..+.. +.+..++..+...+...|++++|...+++.. .
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------~ 275 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL---------E 275 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------H
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH---------H
Confidence 3345555555444443 356777888888877765 4567777788888888888888888887662 2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 037510 546 EAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC 625 (806)
Q Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 625 (806)
. .+.+..++..+...|...+.. ..... ...........+..++|...+++..+.. +.+...+
T Consensus 276 ~-~p~~~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 276 Y-IPNNAYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp H-STTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred h-CCChHHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 1 123455566565555322111 00000 0000111112234678888888888763 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH-HHHhcCCh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA-GICKSGNV 704 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 704 (806)
..+...+...|++++|...|+++++..+.+.. ...++..++. .+...|+.
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVA-----------------------------KQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH-----------------------------HHHHHHHHHHHHHHTSSCH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChH-----------------------------HHHHHHHHHHHHHHHCCCH
Confidence 88899999999999999999999887544310 0112333332 34577899
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
++|+..|++.++ +.|+....... ...+.+++++.++.+ +.++.+|..|+.+|...|++++|++.|++.
T Consensus 389 ~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999 77876543222 234556666766632 337789999999999999999999999998
Q ss_pred HHCC-CCCCHhhH
Q 037510 785 RQKG-LTPTVVTY 796 (806)
Q Consensus 785 ~~~g-~~p~~~~~ 796 (806)
++.| ..|+..+|
T Consensus 457 Le~~~~~p~a~~~ 469 (472)
T 4g1t_A 457 LESGSLIPSASSW 469 (472)
T ss_dssp -------------
T ss_pred HhcCCCCCcHhhc
Confidence 8743 34555444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-16 Score=158.73 Aligned_cols=277 Identities=9% Similarity=0.002 Sum_probs=185.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44455555566666666666666655542 2344555555555555666666666666555543 334455555555555
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-HH-HH
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGAL-IS-GW 597 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-~~-~~ 597 (806)
..|++++|.+.++.+. ... +.+...+..+.. ..|+......+ .. .+
T Consensus 101 ~~~~~~~A~~~~~~~~---------~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 101 NEHNANAALASLRAWL---------LSQ-PQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp HTTCHHHHHHHHHHHH---------HTS-TTTTTC------------------------------------------CCT
T ss_pred HcCCHHHHHHHHHHHH---------HhC-CccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHH
Confidence 5555555555555441 110 000111110000 00111111112 22 36
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhH
Q 037510 598 CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
...|++++|.+.++++++.. +.+...+..++..+...|++++|...++++.+..+
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------------ 203 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP------------------------ 203 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------------------------
Confidence 78899999999999999864 44788899999999999999999999999987642
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
.+..++..++..+...|++++|...|+++.+ ..|+ ..++..++.+|...|++++|++.++++++.....
T Consensus 204 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 204 --------DDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 2567899999999999999999999999998 5565 4589999999999999999999999999843111
Q ss_pred -----------ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 757 -----------NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 757 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+...+..++.++.+.|+.++|..++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36788899999999999999999987643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-16 Score=153.17 Aligned_cols=275 Identities=13% Similarity=0.056 Sum_probs=205.7
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
++-....|+++.|+..++......+.+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344567899999999998877654333345666778899999999999987754 2456777888888889999999
Q ss_pred hHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+..++..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776434 566777778889999999999999987 36788888999999999999999999999
Q ss_pred HHhcCCCCCChHhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 037510 288 MKEEDDVIVDEYAY---GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364 (806)
Q Consensus 288 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 364 (806)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+..
T Consensus 156 ~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 156 MQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 98762 443211 122333445588999999999988873 4578888888889999999999999998887764
Q ss_pred CCChhcHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 037510 365 RPDSFSFNTLVDGYCRECDMTE-AFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL 423 (806)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 423 (806)
+.+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLV 285 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHH
Confidence 5567788888888888888865 56788888775 344432 223334444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-16 Score=153.14 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
+...+..+...+...++.++|.+.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 334444444444444455555555555444433232 23333334444455555555554443 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+.+.|++++|.+.++++.+.++.. . .......++..+...|++++|..
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~--~----------------------------~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDA--T----------------------------LTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--H----------------------------HHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCc--H----------------------------HHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555555555555554432110 0 00000111222223345555555
Q ss_pred HHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 037510 710 IFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR-AKRLFCKLRQ 786 (806)
Q Consensus 710 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 786 (806)
+|+++.+. .|+ ...|+.++.++.+.|++++|++.|+++++. .| ++.++..++..+...|+.++ +.++++++.+
T Consensus 188 ~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 188 IFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555542 232 234455555555555555555555555542 23 34445555555555555443 3345555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-15 Score=161.78 Aligned_cols=345 Identities=11% Similarity=-0.053 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhhC-----C-C-CCChhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-c
Q 037510 334 LICNSLINGYCKLGQVCEAKRVLRCMGDW-----N-L-RPDSFSFNTLVDGYCR--ECDMTEAFRLCAEMLRQGIEPS-V 403 (806)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~-~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~-~ 403 (806)
.+|+.+...|...|++++|...+++..+. + . .....++..+..++.. .+++++|++.|++.++.. |+ .
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCH
Confidence 34445555555555555555555443221 0 0 0112233333333333 334666666666666542 32 2
Q ss_pred chHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHHH
Q 037510 404 VTYNTLLKG---LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTITF 476 (806)
Q Consensus 404 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 476 (806)
..+..+... +...++.++|++.+++.++.. +.+..++..+...+.. .|++++|.+.+++..... +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 233333332 233455666666666666542 2234444444443333 456677788877777653 4466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHH
Q 037510 477 NTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN 556 (806)
Q Consensus 477 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (806)
..+...+...|++++|...+++..+.. +.+..++..+...|...+....+... .
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~-------------------------~ 304 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE-------------------------N 304 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH-------------------------H
Confidence 778888888888888888888887764 44566666666655432211111000 0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH-HHH
Q 037510 557 YLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV--AICSKLVS-TLC 633 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~ 633 (806)
.........+..+.|...++...+.. +.+...+..+...+...|++++|.+.|+++++....+.. ..+..+.. .+.
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 00001111223567777777776653 334566778888889999999999999998876433322 12333332 234
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 634 RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 634 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
..|+.++|+..+++.++.... .... .+....+..++++
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~---------------------------------~~~~---------~~~~~~l~~~~~~ 421 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQK---------------------------------SREK---------EKMKDKLQKIAKM 421 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCC---------------------------------CHHH---------HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCcc---------------------------------cHHH---------HHHHHHHHHHHHH
Confidence 678999999999998876432 1111 1112334455566
Q ss_pred HHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 714 LLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 714 ~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
.++ ..|+. .+|..|+.+|...|++++|++.|+++++.|
T Consensus 422 ~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 422 RLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHH--HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 665 45654 488888888888888888888888888743
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-16 Score=156.68 Aligned_cols=233 Identities=12% Similarity=-0.049 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3345555555666666666666666655532 2244555555566666666666666666665543 2345556666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCChHhH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL--------------TK-GYCKQHKMEEAENMLRRMKEEDDVIVDEYAY 301 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 301 (806)
|...|++++|.+.++++.+... .+...+..+ .. .+...|++++|.+.++++.+. .+.+...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHH
Confidence 6666666666666666665432 122222222 11 244444555555555554443 12234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...|++..+.. +.+..++..+...+.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 4444555555555555555555444321 133444444444445555555555554444332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 382 CDMTEAFRLCAEMLR 396 (806)
Q Consensus 382 g~~~~a~~~~~~m~~ 396 (806)
|++++|.+.++++.+
T Consensus 254 g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-18 Score=181.93 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=111.3
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLL---TGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
-..+||+||++||+.|++++|.++|++|.+ .|..||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 764 LVSGLCNSGEL-DRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 764 l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
||.+|++.|+. ++|.+++++|.++|+.||.++|++++.+..|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999985 7899999999999999999999987776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-18 Score=182.00 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=110.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMR---VGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNS 232 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (806)
...+||+||++|++.|+.++|..+|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||+.|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------hHhHHHHH
Q 037510 233 LIDGYVSLGDL-NGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD------EYAYGVLI 305 (806)
Q Consensus 233 li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li 305 (806)
||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. ..++..+++.. +..|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 88888888874 67788888888888888888888877665443 34444444422 23333 44555666
Q ss_pred HHHHhcC
Q 037510 306 DGYCKVG 312 (806)
Q Consensus 306 ~~~~~~g 312 (806)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=141.57 Aligned_cols=238 Identities=12% Similarity=0.112 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CC
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL--YP 585 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p 585 (806)
...+..+...+...|++++|...++.. .... .+...+..+...+...|++++|.+.+++..+... .+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a---------~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKA---------WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH---------HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 457788889999999999999999988 4444 6778899999999999999999999999887421 11
Q ss_pred C----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhh
Q 037510 586 N----IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 586 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
+ ...+..+...+...|++++|.+.|+++++. .|+. ..+...|++++|...++++....+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-------- 136 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-------- 136 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH--------
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc--------
Confidence 2 577888899999999999999999999986 3443 346677889999999999987642
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHH
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 740 (806)
.+..++..++..+...|++++|...|+++++ ..|+ ..+|..++.+|...|+++
T Consensus 137 ------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 137 ------------------------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ------------------------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHH
Confidence 2556888999999999999999999999999 5565 468999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHH
Q 037510 741 EAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK----GLTPTVVTYNILID 801 (806)
Q Consensus 741 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 801 (806)
+|+..++++++. .| +...+..++.++.+.|++++|...+++..+. +..|+.......+.
T Consensus 191 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 191 EAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 999999999984 45 5778999999999999999999999998762 12276555444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=137.62 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 549 VPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKL 628 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 628 (806)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..++++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566788889999999999999999999999863 3467788899999999999999999999999874 4467889999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 629 VSTLCRL-----------GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 629 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
..++... |++++|...++++++.++. +..++..++.+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------------------------------~~~~~~~lg~~ 127 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------------------------------YAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------------------------------cHHHHHHHHHH
Confidence 9999999 9999999999999987532 67789999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
|...|++++|+..|+++++.. .+...+..++.+|...|++++|+..|+++++ +.| ++..+..++.++.+.|++++
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC------
T ss_pred HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999965 6667899999999999999999999999999 456 67788999999999999999
Q ss_pred HHHHHHHHHH
Q 037510 777 AKRLFCKLRQ 786 (806)
Q Consensus 777 A~~~~~~m~~ 786 (806)
|...+++...
T Consensus 204 A~~~~~~~~~ 213 (217)
T 2pl2_A 204 AARAAALEHH 213 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999988654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-14 Score=149.67 Aligned_cols=313 Identities=11% Similarity=-0.045 Sum_probs=149.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH---hHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQV---CEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
...+.+.|++++|.++|++..+.| ++..+..|...|...|+. ++|...|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344455555666666665555543 222333444444445555 5666666555532 344444455433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 037510 382 C-----DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE---ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGD 453 (806)
Q Consensus 382 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 453 (806)
+ ++++|+..|++..+.|. ...+..|...|...+..+. +.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 55666666666666542 2245555555554443222 333333333332 34455556666666664
Q ss_pred hhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHH
Q 037510 454 FYGAVKLWNNILARGFYKNTITFNTMIKGLCKMG---KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKV----GNLEE 526 (806)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 526 (806)
++.+......+.+.-...+...+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444333222221111123336666666777777 7777777777777776 44555555566666443 56777
Q ss_pred HHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHH-H--HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC--
Q 037510 527 AFKIKNLMERREILPSMEKEAIVPSIDMYNYLISV-A--FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG-- 601 (806)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-- 601 (806)
|...|+.. . +-+...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 236 A~~~~~~a---------a----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 236 AQALLEKI---------A----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHHHHHHH---------G----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred HHHHHHHH---------c----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 77777655 2 2233444444444 2 34556666666666666554 4445555555554 33
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 037510 602 ---MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR----LGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 602 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 652 (806)
++++|++.|++.. . -+...+..+...|.. ..++++|..+|++..+.|
T Consensus 299 ~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp SCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 6666666666555 2 244555555555544 225666666666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=150.19 Aligned_cols=377 Identities=12% Similarity=-0.001 Sum_probs=253.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEG---YVALLVYEQMMRVGIVPDVFTCSIVVNAYC 203 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 203 (806)
.+...+.+.|++++|+++|+...+.| ++.++..|...+...|+. ++|+..|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998865 566777788888888888 8999999998753 5556666666555
Q ss_pred hcC-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 204 KEK-----SMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNG---AKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 204 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
..+ ++++|...|++..+.|.. + .+..|...|...+..+. +.+.+......| ++.++..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 788999999999987633 3 67778888887765444 455555555443 567888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc----CC
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG---KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKL----GQ 348 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 348 (806)
+.++++.+....+.+. -...++..+..+...|...| +.++|+..|++..+.|.. +...+..|...|... ++
T Consensus 155 ~~~~~~~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 8655544443333221 11223448888888999999 999999999999998744 566557777777655 79
Q ss_pred HhHHHHHHHHHhhCCCCCChhcHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-----CHH
Q 037510 349 VCEAKRVLRCMGDWNLRPDSFSFNTLVDG-Y--CRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG-----DVD 420 (806)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-----~~~ 420 (806)
+++|...|++.. . -+...+..+... + ...+++++|++.|++..+.| +...+..+...|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3 356677777776 4 56899999999999999876 6677777777776 55 999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHH
Q 037510 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFN----KGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK----MGKMTEA 492 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 492 (806)
+|...|++.. ..+...+..+...|.. ..++++|...|+...+.|. ......+...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999887 3467788888888876 4499999999999998763 4455566666653 4589999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 493 QKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
..+++...+.|. ++.......+......++..+|..+.+..
T Consensus 378 ~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 378 YVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999872 23222222222222334455666665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-14 Score=138.08 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-
Q 037510 473 TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS- 551 (806)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~- 551 (806)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...++..... .....++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-------GREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HHHTTCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-------Ccccccch
Confidence 3456677777888888888888888887776 66778888888888888888888888876321 1111122
Q ss_pred ---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 552 ---IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKL 628 (806)
Q Consensus 552 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 628 (806)
...+..+...+...|++++|...+++..+. .|+. ..+...|++++|...++++.... +.+...+..+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 145 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 577888999999999999999999999985 4553 34567788999999999999863 3356788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|++++|...++++++..+ .+..++..++.+|...|++++|.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRAP--------------------------------EDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCc--------------------------------ccHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999987652 26778999999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|+++++ ..|+. .+|..++.+|...|++++|++.++++++
T Consensus 194 ~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 194 ADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999 56764 5899999999999999999999999988
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-13 Score=132.64 Aligned_cols=213 Identities=13% Similarity=-0.003 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667778899999999999999999998863 3467788899999999999999999999999874 4478889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...|++++|..+++++.+.+..| .+..++..++.++...|++++|...|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP------------------------------ERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT------------------------------THHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998832222 25668888999999999999999999
Q ss_pred HHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037510 712 SALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 712 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 790 (806)
+++.+ ..|+ ..++..++..|...|++++|+..++++.+.. ..+...+..+...+.+.|+.++|.++++++.+ ..
T Consensus 165 ~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~ 239 (252)
T 2ho1_A 165 EKSLR--LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LY 239 (252)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HC
Confidence 99998 5565 4689999999999999999999999999842 23667788889999999999999999999988 67
Q ss_pred CCHhhHHHHHH
Q 037510 791 PTVVTYNILID 801 (806)
Q Consensus 791 p~~~~~~~li~ 801 (806)
|+...+..++.
T Consensus 240 p~~~~~~~~l~ 250 (252)
T 2ho1_A 240 PGSLEYQEFQA 250 (252)
T ss_dssp TTSHHHHHHHT
T ss_pred CCCHHHHHHHh
Confidence 77766665554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=136.27 Aligned_cols=245 Identities=12% Similarity=0.044 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-- 586 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-- 586 (806)
..+......+...|++++|...++... .. .+.+...+..+...+...|++++|.+.+++..+.+..|+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l---------~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLE---------AK-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHH---------HT-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------Hh-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 345567788899999999999999872 22 123455788899999999999999999999998432222
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...|..+...+...|++++|++.|+++++.. +.+...+..++.++...|++++|...++++++..+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------- 139 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT------------- 139 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-------------
Confidence 2348889999999999999999999999864 44678899999999999999999999999987642
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCC---HHHH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGD---INEA 742 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~---~~~A 742 (806)
.+..++..++..+...+++++|.+.|+++++ ..|+. ..+..++.++...|+ +++|
T Consensus 140 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 140 -------------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred -------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHH
Confidence 2667888888444455699999999999999 67775 588889999999998 8999
Q ss_pred HHHHHHHHHcC-CCCCh------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 743 FNLRDEMLKIN-LVPNI------ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 743 ~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+..++++++.. -.|+. ..|..++..|.+.|++++|.++++++.+ +.|+.......+
T Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHh
Confidence 99999998731 12432 5778899999999999999999999998 678765554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-12 Score=127.44 Aligned_cols=230 Identities=13% Similarity=0.013 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHC
Q 037510 506 PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTM 581 (806)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 581 (806)
.+..++..+...+...|++++|...|+.. .. ..+...+..+...+.. .+++++|...|++..+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---------~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKA---------CD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHH---------HH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 36678888899999999999999999987 33 3355778889999999 99999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 037510 582 GLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR----LGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 653 (806)
+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 72 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 72 N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 5 77888888899988 999999999999999875 78888999999999 999999999999999865
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTL 729 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 729 (806)
+...+..+...|.. .+++++|+..|++..+.+ +..++..+
T Consensus 145 ---------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 188 (273)
T 1ouv_A 145 ---------------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNA 188 (273)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34577788888888 899999999999999853 45678899
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 730 IHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 730 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
+..|.. .+++++|++.|+++.+.+ +...+..+...|.+ .|++++|.+++++..+. .|+...
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 257 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL--GAKGAC 257 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH--TCHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc--CCHHHH
Confidence 999999 999999999999999854 36778889999999 99999999999999884 454433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=129.85 Aligned_cols=196 Identities=17% Similarity=0.048 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
++..+..+...+.+.|++++|+..|+...+..+. +..++..+...+.+.|++++|+..|++.++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3455556666666777777777777766665432 56666666666677777777777776666643 123455555666
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 201 AYCKE-----------KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLT 269 (806)
Q Consensus 201 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 269 (806)
.+.+. |++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66555 55555555555554432 1234444455555555555555555555554444 3444445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNE 323 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (806)
.+|...|++++|+..|++..+. .+.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555554443 122334444444444444555544444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-13 Score=128.57 Aligned_cols=215 Identities=11% Similarity=0.033 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678889999999999999999999998863 3457788899999999999999999999999864 457888999999
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 631 TLCRL-GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 631 ~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
.+... |++++|...++++.+.+..| .+..++..++.++...|++++|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYP------------------------------TPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCS------------------------------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCc------------------------------chHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 99999999999998832222 246688899999999999999999
Q ss_pred HHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 710 IFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 710 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
.++++.+ ..|+ ..++..++..|...|++++|++.++++++.....+...+..+...+...|+.++|..+++.+.+
T Consensus 135 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 210 (225)
T 2vq2_A 135 YLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA-- 210 (225)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--
Confidence 9999998 5676 4689999999999999999999999999853214566777888888999999999999999986
Q ss_pred CCCCHhhHHHHHH
Q 037510 789 LTPTVVTYNILID 801 (806)
Q Consensus 789 ~~p~~~~~~~li~ 801 (806)
..|+......++.
T Consensus 211 ~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 211 NFPYSEELQTVLT 223 (225)
T ss_dssp HCTTCHHHHHHHC
T ss_pred hCCCCHHHHHHhc
Confidence 5787777666553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-12 Score=125.51 Aligned_cols=223 Identities=13% Similarity=0.011 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcccChhhhhcCC
Q 037510 473 TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCK----VGNLEEAFKIKNLMERREILPSMEKEAI 548 (806)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (806)
..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++. ...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a---------~~~~- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA---------CDLN- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------HHTT-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH---------HHCC-
Confidence 344444555555555555555555555552 234455555555555 56666666665554 2222
Q ss_pred CCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCC
Q 037510 549 VPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 620 (806)
+...+..+...+.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 44555555566666 666666666666666653 55666667777776 777788888887777754
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH
Q 037510 621 NVAICSKLVSTLCR----LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA 696 (806)
Q Consensus 621 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 696 (806)
+...+..+...|.. .+++++|...+++..+.+ ++..+..+..
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~ 190 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----------------------------------DSPGCFNAGN 190 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------CHHHHHHHHH
Confidence 55666677777776 778888888888777653 3446677777
Q ss_pred HHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 037510 697 GICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 697 ~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 753 (806)
.|.. .+++++|...|++..+. .| ..++..++..|.. .+++++|++.|+++.+.|
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL--EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 78888888888888774 23 5567777788877 788888888888887754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=138.95 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCC
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE-LTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~p~ 586 (806)
...|..+...+...|++++|+..++.+ ... .+.+...|+.+..++...|+ +++|+..+++..+.. +-+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~a---------l~l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~ 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDA---------IEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKN 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHH---------HHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHH---------HHh-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCC
Confidence 466788888899999999999999987 222 23357889999999999997 999999999999863 336
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...|..+..++...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..++++++.++.
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~------------ 232 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR------------ 232 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------
Confidence 7789999999999999999999999999874 447889999999999999999999999999987643
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh-cCChhhH-----HHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC--
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK-SGNVTDA-----RRIFSALLLTGFSPDNF-TYSTLIHGYAAVG-- 737 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-- 737 (806)
+..+|+.++.++.. .|..++| ++.|+++++ +.|+.. +|..+..++...|
T Consensus 233 --------------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 233 --------------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGG
T ss_pred --------------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCcc
Confidence 77899999999999 6666888 588999999 788764 8999999999988
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCCHhh-HHHHHHh
Q 037510 738 DINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG---------ELDRAKRLFCKL-RQKGLTPTVVT-YNILIDG 802 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~~~-~~~li~~ 802 (806)
++++|++.+.++ + ..| +...+..|+.+|.+.| .+++|.++++++ .+ +.|.... |..+...
T Consensus 291 ~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp GCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 689999999988 4 445 6678899999999875 359999999999 66 6777443 4444333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-13 Score=132.16 Aligned_cols=236 Identities=9% Similarity=-0.036 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPD--VFTCSIVV 199 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~ 199 (806)
++++......+...|++++|+..|+...+..+. +..++..+...+...|++++|+..|++..+....|+ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 344556667777888888888888888776542 556777888888888888888888888877331122 22366777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 037510 200 NAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKME 279 (806)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (806)
..+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+..+ .+..+|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 77777788888888777777654 23456677777777777777777777777766532 34556666662333445777
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------hhHHHHHHHHHHhcCCH
Q 037510 280 EAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK---VDEAIRVLNEMLKTG-LEMN------LLICNSLINGYCKLGQV 349 (806)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~ 349 (806)
+|++.|+++.+. .+.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777777777665 23345556666666666666 666666666665431 0112 13555566666666666
Q ss_pred hHHHHHHHHHhhC
Q 037510 350 CEAKRVLRCMGDW 362 (806)
Q Consensus 350 ~~A~~~~~~~~~~ 362 (806)
++|...|++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=134.56 Aligned_cols=248 Identities=8% Similarity=-0.003 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGE-GYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
+.++..+...+...|++++|++.|+.+++..+. +..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456778888889999999999999999987653 77899999999999997 99999999999886432 6778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHH
Q 037510 201 AYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK-QHKME 279 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 279 (806)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...++++.+..+ .+..+|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998875 44788899999999999999999999999998765 478889999999888 66657
Q ss_pred HH-----HHHHHHHHhcCCCCCChHhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-----
Q 037510 280 EA-----ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG--KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLG----- 347 (806)
Q Consensus 280 ~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 347 (806)
+| ++.|++.... .+-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 77 4778887775 3345677888888888877 588888888887 33 2346677888888888764
Q ss_pred ----CHhHHHHHHHHH-hhCCCCCChhcHHHHHHHH
Q 037510 348 ----QVCEAKRVLRCM-GDWNLRPDSFSFNTLVDGY 378 (806)
Q Consensus 348 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 378 (806)
..++|+.+|+++ .+.+ +.....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5543 23334455444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=131.86 Aligned_cols=212 Identities=9% Similarity=0.007 Sum_probs=164.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667778888999999999999999998853 3467788889999999999999999999999874 45788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+...|++++|...++++.+... .+..++..++..+...|++++|..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM--------------------------------ENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC--------------------------------CSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999987642 256788899999999999999999
Q ss_pred HHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 710 IFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 710 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
.++++.+ ..|+ ..++..++..|...|++++|++.++++.+.. ..+..++..++.+|.+.|++++|.++++++.+
T Consensus 147 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 221 (243)
T 2q7f_A 147 YLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID-- 221 (243)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--
T ss_pred HHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--
Confidence 9999998 5565 4689999999999999999999999999853 23677899999999999999999999999988
Q ss_pred CCCCHhhHHHHH
Q 037510 789 LTPTVVTYNILI 800 (806)
Q Consensus 789 ~~p~~~~~~~li 800 (806)
..|+.......+
T Consensus 222 ~~p~~~~~~~~~ 233 (243)
T 2q7f_A 222 IQPDHMLALHAK 233 (243)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCcchHHHHHHH
Confidence 567654443333
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-13 Score=122.76 Aligned_cols=172 Identities=20% Similarity=0.205 Sum_probs=133.1
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
++..|..+...|...|++++|++.|++.++.. +.+...+..++.+|.+.|++++|...++++......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----------
Confidence 55667778888888888888888888888763 346777788888888888888888888887765432
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHH
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFN 744 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 744 (806)
+...+..++..+...++++.|...+++..+ ..|+. .++..++.+|.+.|++++|++
T Consensus 72 ---------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 72 ---------------------SAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHH
Confidence 456677777888888888888888888887 55654 477888888888888888888
Q ss_pred HHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 745 LRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 745 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
.|+++++ +.| ++.++..++.+|.+.|++++|.+.|++..+ +.|+...|
T Consensus 129 ~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 129 AYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccCHHH
Confidence 8888887 345 567788888888888888888888888887 66765544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-10 Score=121.59 Aligned_cols=244 Identities=11% Similarity=0.011 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQ-KIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
.+..+|++.+.. ++.....|-..+..+...|+.++|. .++++..... +.+...|...+....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445667777765 3557778888888888888888886 9999888753 556667777888888899999999999887
Q ss_pred HhcccChhhh--hcCCCC------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 037510 535 ERREILPSME--KEAIVP------------SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA 600 (806)
Q Consensus 535 ~~~~~~~~~~--~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 600 (806)
...... ... .... | ...+|...+....+.|+.+.|..+|....+.-..+....|...+..-.+.
T Consensus 405 l~~l~~-~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHL-DLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHH-HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHH-Hhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 321000 000 0011 2 23467777888888899999999999998751112233443333333343
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 601 -GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 601 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
++.+.|.++|+..++. ++.+...+...++.....|+.+.|..+|++++.....++
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~----------------------- 538 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH----------------------- 538 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT-----------------------
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH-----------------------
Confidence 4589999999999987 455677777888888889999999999999987653211
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037510 680 ARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 735 (806)
.....|...+..-.+.|+.+.+..+.+++.+ ..|+......+++-|.-
T Consensus 539 ------~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 539 ------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp ------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHTCB
T ss_pred ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHhcC
Confidence 1345788888888899999999999999999 66776655555555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-13 Score=131.62 Aligned_cols=247 Identities=9% Similarity=-0.086 Sum_probs=143.2
Q ss_pred HcCChhhHHHHHHHhhhcCCC---cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhH
Q 037510 134 QKGMLKNALHVFDNMGKYGCI---PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEK 210 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 210 (806)
..|++++|+..|+.+.+.... .+..++..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877765321 235567777777777777777777777777643 2246667777777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 211 ALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 2345667777777777777777777777776643 3333333344444555677777777766555
Q ss_pred cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 291 EDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM---NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 291 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
. .+++...+. ++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+.. |+
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 4 222333332 4455555666666666666654432110 13455555666666666666666666655432 21
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLC 391 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~ 391 (806)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 1 222233444445555554443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=143.53 Aligned_cols=278 Identities=15% Similarity=0.105 Sum_probs=202.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC-CC
Q 037510 475 TFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI----ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA-IV 549 (806)
Q Consensus 475 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 549 (806)
.+..+...+...|++++|...++++.+.+ +.+. ..+..+...+...|++++|...+++..... ...+ ..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~ 123 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-----KSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTTCHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHccCch
Confidence 34445566777788888888888777764 2233 467777778888888888888877663210 0111 12
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHHccCC-----------------hHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTM----GL-YPNIVTYGALISGWCDAGM-----------------LNKAF 607 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~p~~~~~~~l~~~~~~~g~-----------------~~~A~ 607 (806)
.....+..+...+...|++++|...+++..+. +- .....++..+...|...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 23466778888999999999999999887653 11 1124467788888999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhc
Q 037510 608 KAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARS 682 (806)
Q Consensus 608 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (806)
+.+++.++. +..+ ...++..+...+...|++++|...+++..+......
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------- 257 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-------------------------- 257 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--------------------------
Confidence 999887652 1111 245778889999999999999999999876421100
Q ss_pred CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 037510 683 LCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-------NFTYSTLIHGYAAVGDINEAFNLRDEMLKI--- 752 (806)
Q Consensus 683 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 752 (806)
.......++..++..|...|++++|...++++.+. .|+ ..++..++..|...|++++|++.++++++.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL--AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00001347888999999999999999999998873 221 247889999999999999999999999873
Q ss_pred -CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 753 -NLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 753 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+ ...++..+..+|.+.|++++|..++++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 245788899999999999999999999876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-13 Score=131.23 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=44.3
Q ss_pred cCChhHHHHHHHHHHHCCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037510 451 KGDFYGAVKLWNNILARGF---YKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEA 527 (806)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 527 (806)
.|++++|+..++++.+... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3445555555555554321 1133445555555666666666666666665543 33455555555556666666666
Q ss_pred HHHHHHH
Q 037510 528 FKIKNLM 534 (806)
Q Consensus 528 ~~~~~~~ 534 (806)
...++.+
T Consensus 97 ~~~~~~a 103 (275)
T 1xnf_A 97 YEAFDSV 103 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-12 Score=122.09 Aligned_cols=200 Identities=10% Similarity=-0.089 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666666666666666666666666542 2244555555566666666666666666655543 2244555555555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGISR-TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD 315 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 315 (806)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 555566666655555555411112 3344455555555555555555555555443 1223444444555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 316 EAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
+|...++++.+... .+...+..+...+.+.|+.++|...++++.+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555444322 2334444444444444555555554444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-12 Score=120.12 Aligned_cols=199 Identities=11% Similarity=-0.070 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555555555555555555554432 1233444444444555555555555555544432 2233444444444
Q ss_pred HHhC-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 037510 237 YVSL-GDLNGAKRVLEWTCEKGISR-TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKV 314 (806)
Q Consensus 237 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 314 (806)
+... |++++|...++++.+.+..| +...+..+...+...|++++|+..++++.+. .+.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 4444 44444444444444411111 1233444444444444444444444444432 112233334444444444444
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 037510 315 DEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCM 359 (806)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (806)
++|...++++.+..+..+...+..+...+...|+.+.|..+++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444444444433321112333333333333344444444443333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-10 Score=122.05 Aligned_cols=232 Identities=11% Similarity=0.011 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL-HLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNI 464 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (806)
.+..+|++.+.. ++-+...|...+..+...|+.++|. .+|++.+.. ++.+...+...+....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2224556666666666677777775 777777654 3335555666677777777777777777776
Q ss_pred HHCC----------CCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-
Q 037510 465 LARG----------FYK-----------NTITFNTMIKGLCKMGKMTEAQKIFDKMKEL-GCLPNIITYRTLSDGYCKV- 521 (806)
Q Consensus 465 ~~~~----------~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~- 521 (806)
+... .+. ...+|...+....+.|..+.|..+|.++.+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 6531 111 2335777777777778888888888888765 2 12233443333333333
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHc
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP--NIVTYGALISGWCD 599 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~ 599 (806)
++.+.|.++|+.. .+. .+.+...+...+......|+.+.|..+|+........+ ....|...+..-.+
T Consensus 484 ~d~e~Ar~ife~~---------Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 484 KDTKTACKVLELG---------LKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp SCCHHHHHHHHHH---------HHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---------HHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3478888888876 222 33455666777777777888888888888887753221 23567777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTL 632 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 632 (806)
.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 554 ~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp TCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888888888888876 34433334444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-13 Score=138.86 Aligned_cols=283 Identities=14% Similarity=0.074 Sum_probs=196.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC
Q 037510 472 NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA 547 (806)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (806)
....+......+...|++++|...++++.+.+ +.+ ...+..+...+...|++++|...++...... ...+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-----RTIG 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----Hhcc
Confidence 34445555666667777777777777776653 223 2456667777777777777777777652210 1111
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCC-------------------
Q 037510 548 IVP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPN----IVTYGALISGWCDAGM------------------- 602 (806)
Q Consensus 548 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~------------------- 602 (806)
..| ....+..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 111 245667788888888999998888887765310 011 3467778888889999
Q ss_pred -hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhh
Q 037510 603 -LNKAFKAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSL 676 (806)
Q Consensus 603 -~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 676 (806)
+++|.+.+.+.++. +..+ ...++..+...+...|++++|...++++.+......
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------- 221 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------------------- 221 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--------------------
Confidence 99999999887652 1111 245778888999999999999999999875421100
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 677 DESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 677 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.......++..++..|...|++++|...+++..+. +..+. ..++..++..|...|++++|++.++++++
T Consensus 222 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 222 ------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 00012347888999999999999999999998863 11111 24788999999999999999999999887
Q ss_pred cCC----CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 752 INL----VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 752 ~~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..- .+ ...++..+..+|.+.|++++|..++++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 311 11 145778889999999999999999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=125.50 Aligned_cols=203 Identities=13% Similarity=0.037 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 120 FSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVV 199 (806)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 199 (806)
..+..+..+...+...|++++|+..|+.+.+..+ .+...+..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3455667777778888888888888888877543 357777778888888888888888888877653 23566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 037510 200 NAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKME 279 (806)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (806)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 77777788888888887777654 34566677777777777777777777777776543 35666677777777777777
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037510 280 EAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG 328 (806)
Q Consensus 280 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (806)
+|++.++++.+. .+.+..++..+...+...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777776665 23345566666666777777777777777666653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-13 Score=140.47 Aligned_cols=306 Identities=14% Similarity=0.055 Sum_probs=207.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 037510 438 EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN----TITFNTMIKGLCKMGKMTEAQKIFDKMKEL----GCLP-NI 508 (806)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 508 (806)
...+......+...|++++|+..|+++.+.+. .+ ..++..+...+...|++++|...+++..+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34445555666666666666666666665421 12 235566666777777777777777665432 1111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCHHHHHHHHHHHHhcCC--------------------
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSIDMYNYLISVAFKSRE-------------------- 567 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-------------------- 567 (806)
.++..+...+...|++++|...++...... ...+. .....++..+...+...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 466777778888888888888877663210 01110 1124567788888999999
Q ss_pred HhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC
Q 037510 568 LTSLVDLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGK 637 (806)
Q Consensus 568 ~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 637 (806)
+++|.+.+++..+. +..| ...++..+...|...|++++|.+.++++++... .++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999998876542 2111 134677888889999999999999999886310 122 3478888999999999
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 638 IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 638 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+++|...+++..+...... .......++..++..|...|++++|...+++..+.
T Consensus 243 ~~~A~~~~~~al~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLK--------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCc--------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9999999999875421100 00012457888999999999999999999998873
Q ss_pred ----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhcHHHHHHHHHhcCCHH
Q 037510 718 ----GFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVP-NIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 718 ----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 775 (806)
+-.+. ..++..++..|...|++++|++.++++++. +..+ ...++..+...+...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11111 247889999999999999999999998872 2122 3456778888888888763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-13 Score=134.46 Aligned_cols=279 Identities=15% Similarity=0.081 Sum_probs=195.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC-C
Q 037510 476 FNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV-P 550 (806)
Q Consensus 476 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~ 550 (806)
+......+...|++++|...++++.+.. +.+ ...+..+...+...|++++|...++...... ...+.. .
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~ 81 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-----RTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hcccccHH
Confidence 3344556667777777777777776653 223 3456677777777788888777777652210 111111 1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCC--------------------hHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPN----IVTYGALISGWCDAGM--------------------LNK 605 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~ 605 (806)
....+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 245677788888889999999988887765310 112 3367778888888898 899
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 606 AFKAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 606 A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
|.+.+++.++. +..+ ...++..+...+...|++++|...++++.+......
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------ 217 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------------------ 217 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC------------------------
Confidence 99998887642 1111 245777888899999999999999999875311000
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG-FSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKIN-- 753 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 753 (806)
.......++..++..+...|++++|...+++..+.. ..++ ..++..++..|...|++++|+..++++++..
T Consensus 218 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 218 --DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000123478889999999999999999999988631 0111 3478899999999999999999999998731
Q ss_pred --CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 754 --LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 754 --~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
-.+ ...++..+..+|.+.|++++|..++++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 111 244778899999999999999999999887
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=137.21 Aligned_cols=280 Identities=14% Similarity=0.070 Sum_probs=196.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT----ITFNTMIKGLCKMGKMTEAQKIFDKMKEL----GC-LPNIIT 510 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 510 (806)
.+..+...+...|++++|+..|+++.+... .+. ..+..+...+...|++++|...+++..+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 334455566667777777777777666531 122 35666677777777777777777776543 10 123456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC-CCCCHHHHHHHHHHHHhcCC-----------------HhHHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA-IVPSIDMYNYLISVAFKSRE-----------------LTSLV 572 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~ 572 (806)
+..+...+...|++++|...++...... ...+ .......+..+...+...|+ +++|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-----RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 7777888888888888888887763210 1111 11234577788889999999 99999
Q ss_pred HHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 037510 573 DLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 573 ~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 642 (806)
+.+++..+. +..+ ....+..+...|...|++++|.+.+++.++... .++ ...+..+..+|...|++++|.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 988876542 1111 234677888889999999999999999886311 112 337788899999999999999
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----C
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----G 718 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 718 (806)
..+++++....... .......++..++..|...|++++|...+++.++. +
T Consensus 284 ~~~~~al~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 284 EHYKRTLALAVELG--------------------------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 99999876421100 00012457888999999999999999999998873 1
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 719 FSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 719 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..+. ..++..++.+|...|++++|.+.++++++
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 23788999999999999999999999988
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-12 Score=114.95 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.+..+|..+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+.++.... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356789999999999999999999999999863 3357788999999999999999999999999864 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+...++++.|...++++....+ .+..++..++.+|.+.|++++|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~--------------------------------~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT--------------------------------VYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc--------------------------------cchHHHHHHHHHHHHhCCchhHHH
Confidence 999999999999999999987653 267789999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 710 IFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 710 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
.|++.++ +.|+. .+|..++.+|.+.|++++|++.|+++++ +.|+.
T Consensus 129 ~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 129 AYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHH
T ss_pred HHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccC
Confidence 9999999 67876 5899999999999999999999999998 55643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-12 Score=127.96 Aligned_cols=278 Identities=15% Similarity=0.075 Sum_probs=189.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHH
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARGFYKN----TITFNTMIKGLCKMGKMTEAQKIFDKMKEL----GCL-PNIITYR 512 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~ 512 (806)
......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334455566666666666666666542 112 245566666777777777777777665432 111 1245667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCHHHHHHHHHHHHhcCC--------------------HhHH
Q 037510 513 TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSIDMYNYLISVAFKSRE--------------------LTSL 571 (806)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a 571 (806)
.+...+...|++++|...++...... ...+. .....++..+...+...|+ +++|
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHH-----HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 77788888888888888887763210 01110 1113467778888888998 8999
Q ss_pred HHHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 037510 572 VDLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 572 ~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A 641 (806)
.+.+++..+. +..+ ....+..+...+...|++++|.+.++++++... .++ ..++..++..+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9888876542 1111 234677788889999999999999999885310 111 34778888999999999999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT---- 717 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 717 (806)
...+++..+...... .......++..++..|...|++++|...++++.+.
T Consensus 243 ~~~~~~al~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 243 SEYYKKTLLLARQLK--------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--------------------------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 999999875321100 00012457888999999999999999999998763
Q ss_pred CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 718 GFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 718 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+..+. ..++..++..|...|++++|...++++++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11111 23788999999999999999999999988
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-12 Score=135.90 Aligned_cols=196 Identities=10% Similarity=-0.049 Sum_probs=173.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037510 549 VPSIDMYNYLISVAFKSREL-TSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 627 (806)
+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+++++. .|+...+..
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 35788899999999999999 99999999998863 335788999999999999999999999999986 577889999
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 628 LVSTLCRL---------GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 628 l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
+..++... |++++|...++++++..+. +...|..++.+|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~lg~~~ 223 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--------------------------------DGRSWYILGNAY 223 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHH
Confidence 99999999 9999999999999987532 677899999999
Q ss_pred Hhc--------CChhhHHHHHHHHHHCCCCC---C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 699 CKS--------GNVTDARRIFSALLLTGFSP---D-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 699 ~~~--------g~~~~A~~~~~~~~~~g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
... |++++|+..|+++++ +.| + ..+|..++.+|...|++++|++.|+++++ +.| +...+..+.
T Consensus 224 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~ 299 (474)
T 4abn_A 224 LSLYFNTGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHhhccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 998 999999999999999 678 4 46899999999999999999999999998 456 566788999
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~ 783 (806)
.++...|++++|.+.+.+
T Consensus 300 ~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999976544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-11 Score=128.27 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=177.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-----C
Q 037510 514 LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YP-----N 586 (806)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p-----~ 586 (806)
....+...|++++|...++...... ...+-.+ ...++..+...+...|++++|...+++..+.-. .+ .
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKL-----IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG-----GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH-----hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 5667788999999999999873210 0011111 346788899999999999999999998875310 11 1
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPN----VAICSKLVSTLCRLGKIDEANIFLQKMVDF----DFVPDL 657 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~ 657 (806)
..+++.+...|...|++++|.+.++++++... .++ ..++..++.+|...|++++|...+++.++. +..|
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-- 261 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-- 261 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch--
Confidence 34678888999999999999999999886311 112 347888999999999999999999998863 1111
Q ss_pred hhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC---CCCCH-HhHHHHHHHH
Q 037510 658 KYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG---FSPDN-FTYSTLIHGY 733 (806)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~-~~~~~l~~~~ 733 (806)
....++..++.+|.+.|++++|...+++..+.. -.|.. ..+..+...|
T Consensus 262 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 262 ----------------------------SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp ----------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 135678899999999999999999999988731 02222 2467889999
Q ss_pred HhcCC---HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 734 AAVGD---INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 734 ~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
...|+ +++|+.++++. +..| ....+..++..|.+.|++++|..++++..+
T Consensus 314 ~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999 77888887776 2333 345778899999999999999999999764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-11 Score=124.63 Aligned_cols=238 Identities=9% Similarity=-0.018 Sum_probs=176.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC--CCCC
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGC-LPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA--IVPS 551 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~ 551 (806)
....+...|++++|...+++..+.-. .++ ..++..+...+...|++++|...+++..... ...+ ....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~ 183 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-----KEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCSTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhCccchHHH
Confidence 55667788999999999998876410 122 3678888899999999999999988773210 1111 1112
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCC
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPN----IVTYGALISGWCDAGMLNKAFKAYFDMIEK----GF-SPN 621 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~ 621 (806)
..+++.+...+...|++++|.+.+++..+... .++ ..++..+...|...|++++|.+.+++.++. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 46788899999999999999999998875311 111 247888899999999999999999999872 22 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
..++..++.++.+.|++++|...+++..+..... ..+.....+..+...|...
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---------------------------GDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHHHHHhCC
Confidence 6788899999999999999999999987641100 0001122356788889999
Q ss_pred CC---hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GN---VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+ .++|+.++++. +..|+. .++..++..|...|++++|.+.++++++
T Consensus 317 ~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99 77777777765 334444 3788999999999999999999999987
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-10 Score=114.84 Aligned_cols=218 Identities=8% Similarity=0.008 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhcccChhhhhcCCCCCHHHH
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCK-------VGNL-------EEAFKIKNLMERREILPSMEKEAIVPSIDMY 555 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (806)
++|...|+++.+.. +.+...|..++..+.. .|++ ++|..+|++. ...-.+.+...|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA---------l~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA---------ISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH---------HTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH---------HHHhCcccHHHH
Confidence 67888888888764 5577788887777653 5776 8888888876 221122356678
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 556 NYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+++++.. +++...|...+....
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 88888888888888888888888874 444 32 68888888888888888888888888753 234444443333322
Q ss_pred -hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 634 -RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 634 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
..|++++|..+|+++++..+ .+...|..++..+.+.|++++|..+|+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG--------------------------------DIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC--------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36888888888888876532 256678888888888888888888888
Q ss_pred HHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 713 ALLLTG-FSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 713 ~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
++++.. +.|+ ...|..++..+.+.|+.++|..+++++.+.
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888852 3554 347777888888888888888888888873
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-12 Score=126.29 Aligned_cols=213 Identities=15% Similarity=0.063 Sum_probs=167.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc------
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTM-------GLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK------ 616 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 616 (806)
....++..+...+...|++++|...++++.+. ........+..+...|...|++++|...++++++.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677888999999999999999999998873 22334567888889999999999999999999864
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 617 GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 617 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
+-.| ....+..+...+...|++++|...++++.+.... ......+....++..++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHH
Confidence 2222 3667888999999999999999999998864100 00000012345788899
Q ss_pred HHHHhcCChhhHHHHHHHHHHC------CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------
Q 037510 696 AGICKSGNVTDARRIFSALLLT------GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN--------------- 753 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~------g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 753 (806)
..|...|++++|++.|+++.+. +..|+. .++..++.+|...|++++|++.++++++..
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 9999999999999999999874 224544 388999999999999999999999998621
Q ss_pred --------------------------------CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 754 --------------------------------LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 754 --------------------------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..| +..++..++.+|.+.|++++|.+++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122 456788899999999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-11 Score=115.62 Aligned_cols=209 Identities=11% Similarity=-0.004 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.++..+......+...|++++|.+.|++..+....++...+..+..++...|++++|++.+++.++.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888889999999999999999999887543677777778888999999999999999999863 33567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCCh-------HHHHHHHHHHHhcC
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNY-------VVYNIVIAGICKSG 702 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g 702 (806)
.++...|++++|...++++++..+. +. .+|..++..+...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG--------------------------------NATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT--------------------------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC--------------------------------cHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999876532 44 55888888899999
Q ss_pred ChhhHHHHHHHHHHCCCCCC--H-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPD--N-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
++++|++.|+++++ ..|+ . .+|..++.+|...|+ ..++++...+ ..+...|..+ .....|.+++|..
T Consensus 132 ~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~ 201 (228)
T 4i17_A 132 NIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVD 201 (228)
T ss_dssp CHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999999998 6787 5 478888888866543 4455555532 2233344333 2445677899999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 780 LFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 780 ~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
++++..+ +.|+......++...
T Consensus 202 ~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 202 YLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHhh--cCCCCHHHHHHHHHH
Confidence 9999998 788876666655443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=136.59 Aligned_cols=163 Identities=20% Similarity=0.156 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...|+.+...|.+.|++++|++.|+++++.. +-+...+..+..+|.+.|++++|+..|+++++.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------------ 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------------ 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Confidence 4456666666666666666666666666642 224556666666666666666666666666654321
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 745 (806)
+..+|..++.+|...|++++|++.|++.++ +.|+. .+|+.++.+|.+.|++++|++.
T Consensus 76 --------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 76 --------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455666666666666666666666666666 55654 3666666666666666666666
Q ss_pred HHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 746 RDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 746 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
|+++++ +.| +...+..|+.+|...|++++|.+.++++.+
T Consensus 134 ~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 134 YRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666666 345 445666666666666666666666666543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=131.22 Aligned_cols=216 Identities=11% Similarity=-0.049 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC
Q 037510 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNL-EEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567 (806)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
++++...+++..... +.+...+..+...+...|++ ++|.+.+++.. .. .+.+...+..+...|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al---------~~-~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAV---------KL-EPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH---------HH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHH---------hh-CCCCHHHHHHHHHHHHHcCC
Confidence 556666666655443 34677777788888888888 88888887762 22 12346778888888888888
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 037510 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDA---------GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL--- 635 (806)
Q Consensus 568 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 635 (806)
+++|.+.|++..+. .|+...+..+...|... |++++|++.|+++++.. +.+...|..+..+|...
T Consensus 153 ~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 88888888888876 46778888888888888 99999999999999874 44688899999999998
Q ss_pred -----CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 636 -----GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 636 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
|++++|...|+++++.++.. ..+..+|..++.+|...|++++|.+.
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~-----------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKA-----------------------------SSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGG-----------------------------GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCc-----------------------------ccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999864310 02677999999999999999999999
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
|+++.+ +.|+.. ++..+..++...|++++|++.+.++
T Consensus 281 ~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 281 FSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999 678764 8999999999999999999866543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-10 Score=115.10 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=108.7
Q ss_pred hhHHHHHHHhhhcCCCcChhhHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHH
Q 037510 139 KNALHVFDNMGKYGCIPSLRSCNCLLSNLVK-------NGEG-------YVALLVYEQMMRVGIVP-DVFTCSIVVNAYC 203 (806)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~ 203 (806)
++|+.+|++..+..+ .++..|..++..+.. .|+. ++|..+|++.++. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 577788888877543 367778777777653 3554 5666666666552 122 3345555556666
Q ss_pred hcCChhHHHHHHHHHHHcCCCcC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELN-VV-TYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYC-KQHKMEE 280 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 280 (806)
+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+..+ .+...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666553 222 22 455555555555555555555555555332 22223322222211 1355555
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--ChhHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG-LEM--NLLICNSLINGYCKLGQVCEAKRVLR 357 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (806)
|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..+++
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555554443 12233444444444444555555555555544431 122 23344444444444444444444444
Q ss_pred HHhh
Q 037510 358 CMGD 361 (806)
Q Consensus 358 ~~~~ 361 (806)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=126.79 Aligned_cols=168 Identities=15% Similarity=0.048 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhc-------CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKY-------GCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV------GI 188 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~ 188 (806)
..++..+...|...|++++|+..|+.+.+. .......++..+...+...|++++|+..|++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456667777777777777777777777653 12223446666677777777777777777766553 11
Q ss_pred -CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Q 037510 189 -VPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL------GF-ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK---- 256 (806)
Q Consensus 189 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 256 (806)
.....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112344555555566666666666666655442 11 112334445555555555555555555554442
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 257 --GISR-TAVTYTTLTKGYCKQHKMEEAENMLRRMK 289 (806)
Q Consensus 257 --~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (806)
+..| ...++..+...|...|++++|.+.++++.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0001 12234444444444444444444444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-10 Score=116.50 Aligned_cols=240 Identities=13% Similarity=-0.002 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CC
Q 037510 512 RTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEA-IVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM----GL-YP 585 (806)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~p 585 (806)
......+...|++++|...++...... ...+ ......++..+...+...|+++.|...+++..+. +- .+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKEL-----PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTG-----GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHH-----hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 344556778999999999999873210 0001 1113467788999999999999999999887652 11 11
Q ss_pred -CHhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh
Q 037510 586 -NIVTYGALISGWCDAGMLNKAFKAYFDMIEK----GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKY 659 (806)
Q Consensus 586 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 659 (806)
...+++.+...|...|++++|.+.++++++. +..+ ...++..++.+|...|++++|...+++.++....
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~----- 254 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE----- 254 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----
Confidence 2456778888999999999999999998863 1111 2457788999999999999999999998862100
Q ss_pred hhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC---CCCH-HhHHHHHHHHHh
Q 037510 660 MASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF---SPDN-FTYSTLIHGYAA 735 (806)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~ 735 (806)
...+....++..++.+|.+.|++++|...+++..+... .|.. ..+..+...|..
T Consensus 255 ----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 255 ----------------------KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp ----------------------HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred ----------------------hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 00011355788899999999999999999999988421 2322 356777788888
Q ss_pred cCC---HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 736 VGD---INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 736 ~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.|+ +.+|+.++++. +..| ....+..++..|...|++++|..++++..+
T Consensus 313 ~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888 78888887762 2233 334667889999999999999999999865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-09 Score=113.80 Aligned_cols=236 Identities=13% Similarity=-0.012 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HhH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR----SCNCLLSNLVKNGEGYVALLVYEQMMRVGIV-PD----VFT 194 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-~~----~~~ 194 (806)
+.......+...|++++|...++.........+.. +++.+...+...|++++|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445556778899999999988877654322222 4566677778888888888888877653111 11 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----Chh
Q 037510 195 CSIVVNAYCKEKSMEKALDFVKEMENL----GFE--L-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR----TAV 263 (806)
Q Consensus 195 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 263 (806)
+..+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 445566677777777777777776542 111 2 23345556666777777777777777665532211 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhH
Q 037510 264 TYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYG-----VLIDGYCKVGKVDEAIRVLNEMLKTGLEMN---LLI 335 (806)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 335 (806)
++..+...+...|++++|...+++.........+...+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455556666666666666666666543211111101111 112224455556665555555443221110 112
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 037510 336 CNSLINGYCKLGQVCEAKRVLRCM 359 (806)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~~ 359 (806)
+..+...+...|++++|...+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-09 Score=113.78 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=184.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC-CCHH
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGCLPNI----ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV-PSID 553 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~ 553 (806)
....+...|++++|...+++..+.....+. ..+..+...+...|++++|...++...... ...+.. ....
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~ 94 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HhcCcHHHHHH
Confidence 344555677888888887777665422222 245566677778888888888887663210 011100 0123
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--C--CH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTM----GLY--P-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFS--P--NV 622 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~--~~ 622 (806)
.+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.++.... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566778888999999999998887652 222 2 2345666778889999999999999998874221 1 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HH--HHHHHHHH
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VY--NIVIAGIC 699 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~~~~~ 699 (806)
..+..+...+...|++++|...+++.......+. .+... .. ...+..+.
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK----------------------------YHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----------------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----------------------------cchhHHHHHHHHHHHHHH
Confidence 5677888889999999999999999875421110 01000 11 13344577
Q ss_pred hcCChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hcHHHHHHHHHhc
Q 037510 700 KSGNVTDARRIFSALLLTGFSPD---NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVPNI-ATYNSLVSGLCNS 771 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~ 771 (806)
..|++++|...+++..+....+. ...+..++..+...|++++|...++++... |..++. ..+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 89999999999998876321111 225677888999999999999999988762 211222 3566777888999
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 772 GELDRAKRLFCKLRQ 786 (806)
Q Consensus 772 g~~~~A~~~~~~m~~ 786 (806)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=108.86 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
++...+..+..++...|++++|.+.+++..+.. +.+...|..+...|...|++++|++.+++.++.. +.+...+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 117 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYA 117 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 666777778999999999999999999998863 2245678888889999999999999999999863 33566666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCC--ChHHHHHHHHHHHhcCChhhH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVP--NYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 707 (806)
.++...|.......-+++++. .+..... ..+. +..+|..++.+|...|
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~------------------------~~~~al~-~~p~~~~~~~~~~l~~~~~~~~----- 167 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEE------------------------NYKHATD-VTSKKWKTDALYSLGVLFYNNG----- 167 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH------------------------HHHHHTT-SSCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhHHHHHhccHHHHHH------------------------HHHHHHh-cCCCcccHHHHHHHHHHHHHHH-----
Confidence 777766654433222222221 1111111 1123 3567778888886544
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 708 RRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
...++++...+ ..+...|..+. ....+.+++|+..++++++ +.|+.
T Consensus 168 ~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 168 ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 44556666532 12233443332 3455678999999999998 45643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=110.24 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=105.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
.+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------
Confidence 34455555666667777776666665542 33556666666667777777777777777665431
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
.+..++..++..+...|++++|.+.++++.+ ..|+ ...+..++..+...|++++|++.++
T Consensus 74 -----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 74 -----------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp -----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 2455666677777777777777777777766 3343 3466677777777777777777777
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 748 EMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 748 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.+.. ..+...+..++.++...|++++|.++++++.+
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777642 22456667777777777777777777777665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=129.53 Aligned_cols=165 Identities=17% Similarity=0.138 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...++.|...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|+++++.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999999863 2347789999999999999999999999999863 346889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
+|.+.|++++|++.|+++++.++. +..+|+.++.+|...|++++|++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~--------------------------------~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA--------------------------------FADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999986532 677999999999999999999999
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+++++ +.|+.. +|..++.+|...|++++|.+.++++++
T Consensus 134 ~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 134 YRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999 789864 899999999999999999999999876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-10 Score=114.65 Aligned_cols=163 Identities=12% Similarity=-0.016 Sum_probs=89.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----ChHhHH
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGIS-R----TAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIV-----DEYAYG 302 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 302 (806)
....+...|++++|...|++..+.... + ...++..+...|...|++++|+..+++..+.....+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344455667777777777766543110 1 134556666666677777777766666554211111 133455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC-CChhHHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCCCCChhcHH
Q 037510 303 VLIDGYCKVGKVDEAIRVLNEMLKT----GLE-MNLLICNSLINGYCKLGQVCEAKRVLRCMGD-----WNLRPDSFSFN 372 (806)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 372 (806)
.+...+...|++++|.+.+++..+. +.. ....++..+...|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6666666667777776666665542 111 1123455566666666666666666665544 21 22244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
.+...+.+.|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555566666666666666665554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=114.76 Aligned_cols=177 Identities=18% Similarity=0.096 Sum_probs=137.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEK------GFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK 658 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 658 (806)
...++..+...|...|++++|...++++++. +-.| ...++..+..++...|++++|...++++++....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---- 117 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK---- 117 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH----
Confidence 3567788888899999999999999988864 2222 3567888999999999999999999998764100
Q ss_pred hhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC------CCCCCH-HhHHHHHH
Q 037510 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT------GFSPDN-FTYSTLIH 731 (806)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~-~~~~~l~~ 731 (806)
......+....++..++..|...|++++|...++++.+. +-.|+. .++..++.
T Consensus 118 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 118 --------------------VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp --------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred --------------------HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 000000124567888999999999999999999999884 114544 48899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-----------------------------------------------CCC-ChhcHHH
Q 037510 732 GYAAVGDINEAFNLRDEMLKIN-----------------------------------------------LVP-NIATYNS 763 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------------~~p-~~~~~~~ 763 (806)
+|...|++++|++.++++++.. ..| ...++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998630 112 3446788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.+|.+.|++++|..++++..+
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-09 Score=98.51 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAY 202 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 202 (806)
..+..+...+...|++++|+..|+.+.+..+ .+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4556677778888888888888888877643 366778888888888888888888888887753 23566677777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037510 203 CKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 203 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (806)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888888777653 34566777777777777777777777777776543 35666777777777777777777
Q ss_pred HHHHHHHhc
Q 037510 283 NMLRRMKEE 291 (806)
Q Consensus 283 ~~~~~~~~~ 291 (806)
+.+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777776553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-10 Score=105.11 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhh
Q 037510 627 KLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTD 706 (806)
Q Consensus 627 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 706 (806)
.+..++.+.|++++|...+++.++.++. +..++..++.+|...|++++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~lg~~~~~~g~~~~ 106 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN--------------------------------NVDCLEACAEMQVCRGQEKD 106 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 3888999999999999999999987533 67899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGD--INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
|+..|+++++ +.|+. .+|..++.+|...|+ .+++...+++... ..|....+..+..++...|++++|...|++
T Consensus 107 A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 107 ALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999 77876 489999999877654 4556666666543 233333455667788889999999999999
Q ss_pred HHHCCCCCCHhhHHHHH
Q 037510 784 LRQKGLTPTVVTYNILI 800 (806)
Q Consensus 784 m~~~g~~p~~~~~~~li 800 (806)
.++ +.|+......+-
T Consensus 183 al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 183 VIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HTT--TSCCHHHHHHHH
T ss_pred HHH--hCCCHHHHHHHH
Confidence 998 789877666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=108.93 Aligned_cols=241 Identities=15% Similarity=0.038 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--C-ChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCC
Q 037510 491 EAQKIFDKMKELGCLPNIITYRTLSDGYCKV--G-NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567 (806)
Q Consensus 491 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
+|.+++.+..+.- ++....| .+.+. + ++++|...++.. +..|...|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a------------------------~~~~~~~g~ 52 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA------------------------ATIYRLRKE 52 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH------------------------HHHHHHTTC
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH------------------------HHHHHHcCC
Confidence 4666677666642 2211112 12232 2 478888777654 456788999
Q ss_pred HhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-C
Q 037510 568 LTSLVDLLAEMQTM----GLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF---SP--NVAICSKLVSTLCRL-G 636 (806)
Q Consensus 568 ~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g 636 (806)
+++|.+.|.+..+. |-.++ ..+|+.+..+|...|++++|+..+++.++... .+ -..++..+...|... |
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999987653 32222 46788999999999999999999999886311 11 145788899999996 9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 637 KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 637 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
++++|+..+++.++........ .....+++.++..|...|++++|+..|+++.+
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSV--------------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCh--------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999988642110000 00134688899999999999999999999999
Q ss_pred CCCCCCHH--------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------cHHHHHHHHH--hcCCHHHHHHH
Q 037510 717 TGFSPDNF--------TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA------TYNSLVSGLC--NSGELDRAKRL 780 (806)
Q Consensus 717 ~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~ 780 (806)
..|+.. +|..++.++...|++++|+..|++.++ +.|+.. .+..++.++. ..+++++|+..
T Consensus 187 --~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 187 --SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp --TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred --HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445431 577888999999999999999999987 455422 2344556664 45778999998
Q ss_pred HHHHHHCCCCCCH
Q 037510 781 FCKLRQKGLTPTV 793 (806)
Q Consensus 781 ~~~m~~~g~~p~~ 793 (806)
|+++.. +.|+.
T Consensus 263 ~~~~~~--l~~~~ 273 (292)
T 1qqe_A 263 FDNFMR--LDKWK 273 (292)
T ss_dssp HTTSSC--CCHHH
T ss_pred hccCCc--cHHHH
Confidence 887765 55544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-09 Score=97.54 Aligned_cols=179 Identities=13% Similarity=-0.011 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 037510 569 TSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLG----KIDEANIF 644 (806)
Q Consensus 569 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 644 (806)
.+|.+.|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677788888764 67788888888989999999999999999875 67778888888887 6 89999999
Q ss_pred HHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCC
Q 037510 645 LQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFS 720 (806)
Q Consensus 645 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 720 (806)
|++..+.+ ++..+..|...|.. .+++++|++.|++..+. .
T Consensus 76 ~~~A~~~g----------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~ 119 (212)
T 3rjv_A 76 AEKAVEAG----------------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--S 119 (212)
T ss_dssp HHHHHHTT----------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--T
T ss_pred HHHHHHCC----------------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--C
Confidence 99998765 55688888888887 88999999999999984 4
Q ss_pred CC---HHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc-C-----CHHHHHHHHHHHHHC
Q 037510 721 PD---NFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNS-G-----ELDRAKRLFCKLRQK 787 (806)
Q Consensus 721 p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~ 787 (806)
|+ ..++..|+..|.. .+++++|+.+|+++.+. ..++..+..|...|... | +.++|..++++..+.
T Consensus 120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 53 5688899999988 88999999999999984 34666788888888754 3 899999999999987
Q ss_pred CCCCC
Q 037510 788 GLTPT 792 (806)
Q Consensus 788 g~~p~ 792 (806)
|...-
T Consensus 198 g~~~A 202 (212)
T 3rjv_A 198 GFDTG 202 (212)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 75443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-08 Score=96.51 Aligned_cols=189 Identities=11% Similarity=-0.001 Sum_probs=138.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 571 LVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPNVAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
|+..+++..+.+ .++..++..+..++...|++++|++.+.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 45666667788889999999999999999887653 2356777888999999999999999999998
Q ss_pred hCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH--HHhcC--ChhhHHHHHHHHHHCCCCCCHHh
Q 037510 650 DFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG--ICKSG--NVTDARRIFSALLLTGFSPDNFT 725 (806)
Q Consensus 650 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~ 725 (806)
+.... ... .+..+...|+.+ ....| ++++|..+|+++.+ ..|+..+
T Consensus 164 ~~~~d--~~~--------------------------~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~ 213 (310)
T 3mv2_B 164 NAIED--TVS--------------------------GDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKT 213 (310)
T ss_dssp HHSCH--HHH--------------------------HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHH
T ss_pred hcCcc--ccc--------------------------cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCccc
Confidence 75320 000 012333444444 33334 89999999999987 5677444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC---CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKI-----NL---VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
-..+..++.+.|++++|.+.++.+.+. +. .| |+.++..+|......|+ +|.++++++.+ ..|+..
T Consensus 214 ~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 214 QLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 344555899999999999999987652 11 24 67788778877777887 99999999998 677643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-09 Score=104.05 Aligned_cols=173 Identities=10% Similarity=0.018 Sum_probs=137.3
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN---VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..++.++.+.|++++|...|+++++..+..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------- 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------- 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-------
Confidence 45566677777888999999999999988763 223 6778888899999999999999999998865321
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh--------cCChhhHHHHHHHHHHCCCCCCHH-hH-------
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK--------SGNVTDARRIFSALLLTGFSPDNF-TY------- 726 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~~-~~------- 726 (806)
+....++..++.++.. .|++++|+..|+++++ ..|+.. ..
T Consensus 86 ----------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 86 ----------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIR 141 (261)
T ss_dssp ----------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHH
T ss_pred ----------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHH
Confidence 1124567778888888 9999999999999999 567653 33
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHHHhc----------CCHHHHHHHHH
Q 037510 727 ----------STLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATYNSLVSGLCNS----------GELDRAKRLFC 782 (806)
Q Consensus 727 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~ 782 (806)
..++..|.+.|++++|+..|+++++. .|+ ...+..++.+|... |++++|...++
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 56789999999999999999999984 343 34677888888866 89999999999
Q ss_pred HHHHCCCCCCHh
Q 037510 783 KLRQKGLTPTVV 794 (806)
Q Consensus 783 ~m~~~g~~p~~~ 794 (806)
++.+ ..|+..
T Consensus 220 ~~~~--~~p~~~ 229 (261)
T 3qky_A 220 RLLQ--IFPDSP 229 (261)
T ss_dssp HHHH--HCTTCT
T ss_pred HHHH--HCCCCh
Confidence 9988 567653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=100.16 Aligned_cols=142 Identities=10% Similarity=-0.019 Sum_probs=81.9
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
..+...|++++|+..+++..... +.+...+..+...|.+.|++++|...|+++++.++.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-------------------- 63 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-------------------- 63 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------
Confidence 34445566666666666655431 112334455666666666666666666666655422
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHH-HHHHHHc
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNL-RDEMLKI 752 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 752 (806)
++.+|..++.+|...|++++|+..|+++++ +.|+. .+|..++..|.+.|++++|.+. ++++++
T Consensus 64 ------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~- 128 (150)
T 4ga2_A 64 ------------DPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK- 128 (150)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-
T ss_pred ------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-
Confidence 555666666666666666666666666666 55654 3666666666666666555543 466666
Q ss_pred CCCC-ChhcHHHHHHHHHhcCC
Q 037510 753 NLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 753 ~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
+.| ++.+|......+...|+
T Consensus 129 -l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 129 -LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -HSTTCHHHHHHHHHHHHTCCC
T ss_pred -hCcCCHHHHHHHHHHHHHhCc
Confidence 345 44555555555555553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=107.35 Aligned_cols=158 Identities=15% Similarity=0.025 Sum_probs=104.9
Q ss_pred HHcCChhhHHHHHHHhhhc-------CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHhHHHHH
Q 037510 133 AQKGMLKNALHVFDNMGKY-------GCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV------GIVP-DVFTCSIV 198 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~-~~~~~~~l 198 (806)
...|++++|+..|++..+. ..+....++..+...+...|++++|+..|+++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777766542 22224567888888888888888888888887764 1122 34567777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCChhh
Q 037510 199 VNAYCKEKSMEKALDFVKEMENL------G-FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK------G-ISRTAVT 264 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 264 (806)
...+...|++++|...++++.+. . .+....++..+...|...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77888888888888888877654 1 1223556777777777778888887777777654 1 1112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
+..+...|...|++++|.+.+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-09 Score=99.03 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHH----------------HHHHHHccCChHHHHHHHHHHHHc
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGA----------------LISGWCDAGMLNKAFKAYFDMIEK 616 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 616 (806)
.+-.....+...|++++|...|++..+. .|+ ...|.. +..+|.+.|++++|+..|++.++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344556778999999999999999886 343 445666 888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH
Q 037510 617 GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA 696 (806)
Q Consensus 617 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 696 (806)
. +.+...+..+..++...|++++|...|+++++.++. +..+|..++.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------------------~~~a~~~lg~ 130 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--------------------------------NLAANIFLGN 130 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------------CHHHHHHHHH
Confidence 4 447889999999999999999999999999987533 6778999999
Q ss_pred HHHhcCC--hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 697 GICKSGN--VTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 697 ~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+|...|+ ...+...+++... ..|....+..++.++...|++++|+..|+++++ +.|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 8877664 4556667766654 334444666778888889999999999999998 678765444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-08 Score=92.72 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=140.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCHHHHHHHHHHHHhcCCHhH
Q 037510 492 AQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSIDMYNYLISVAFKSRELTS 570 (806)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
|+..+++..+.+ .++..++..+..++...|++++|++++... ...+. .-+...+..++..+.+.|+.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~---------i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEG---------IDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------HTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH---------hccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 667777776654 455666667778888888888888888755 22222 2356677778888888999999
Q ss_pred HHHHHHHHHHCCCCC-----CHhHHHHHHHHH--Hc--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037510 571 LVDLLAEMQTMGLYP-----NIVTYGALISGW--CD--AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 571 a~~~~~~~~~~g~~p-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
|.+.+++|.+. .| +..+...+..++ .. .+++.+|+.+|+++.+. .|+..+...++.++.+.|++++|
T Consensus 155 A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 155 ASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHH
Confidence 99999888775 55 244555555452 22 34899999999998765 45544444555588999999999
Q ss_pred HHHHHHHhhCCC--------CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 642 NIFLQKMVDFDF--------VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 642 ~~~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
.+.++.+.+..+ .| .|+.++-.+|......|+ +|.+++++
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p------------------------------~~~~~LaN~i~l~~~lgk--~a~~l~~q 278 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVL------------------------------YKPTFLANQITLALMQGL--DTEDLTNQ 278 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHS------------------------------SHHHHHHHHHHHHHHTTC--TTHHHHHH
T ss_pred HHHHHHHHHhcccccccccCCC------------------------------CCHHHHHHHHHHHHHhCh--HHHHHHHH
Confidence 999997765311 12 266677666666666776 89999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 714 LLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 714 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+.+ ..|+..... ++.+....|+++..
T Consensus 279 L~~--~~P~hp~i~----------d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 279 LVK--LDHEHAFIK----------HHQEIDAKFDELVR 304 (310)
T ss_dssp HHH--TTCCCHHHH----------HHHHHHHHHHHHHH
T ss_pred HHH--hCCCChHHH----------HHHHHHHHHHHHHH
Confidence 999 789876321 23455566666655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-09 Score=102.16 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CC-CHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN----IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SP-NVA 623 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~ 623 (806)
.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++++... .| ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777788899999999999999999998863 33 56788888999999999999999999998632 12 255
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 624 ICSKLVSTLCR--------LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 624 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
.+..+..++.. .|++++|...|+++++..+...........+ ...... ....+..++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~----~~~~~~-----------~~~~~~~la 155 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI----RELRAK-----------LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH----HHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH----HHHHHH-----------HHHHHHHHH
Confidence 67788888988 9999999999999998754321110000000 000000 011246678
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChh--
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAV----------GDINEAFNLRDEMLKINLVPNIA-- 759 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~-- 759 (806)
..|.+.|++++|+..|+++++ ..|+. .++..++.+|... |++++|+..|+++++. .|+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~ 231 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLL 231 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHH
T ss_pred HHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHH
Confidence 899999999999999999998 55652 3788888999876 8999999999999984 46432
Q ss_pred --cHHHHHHHHHhcCCHHH
Q 037510 760 --TYNSLVSGLCNSGELDR 776 (806)
Q Consensus 760 --~~~~l~~~~~~~g~~~~ 776 (806)
....+...+.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 33444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-09 Score=89.48 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.+..++..+...|++++|..+++++.+.+. .+..++..++..+...|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~~ 50 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------------RSAEAWYNLGNAYYKQGD 50 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--------------------------------cchhHHHHHHHHHHHhcC
Confidence 466778888899999999999999887542 256688889999999999
Q ss_pred hhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 704 VTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
+++|...++++.+ ..|+ ..++..++..+...|++++|++.++++.+.. ..+...+..++.++.+.|++++|..+++
T Consensus 51 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 51 YDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 9999999999998 4454 4588899999999999999999999999853 2367788889999999999999999999
Q ss_pred HHHH
Q 037510 783 KLRQ 786 (806)
Q Consensus 783 ~m~~ 786 (806)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9887
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-09 Score=119.92 Aligned_cols=172 Identities=13% Similarity=0.018 Sum_probs=146.0
Q ss_pred HhcCCHhHHHHHHHHHH--------HCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 563 FKSRELTSLVDLLAEMQ--------TMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~--------~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|++.|+++++.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 43 13356678888899999999999999999999863 4478899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 635 LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 635 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.|++++|...|+++++.++. +...|..++.+|.+.|++++ ++.|+++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~--------------------------------~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG--------------------------------ELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--------------------------------CSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC--------------------------------ChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 99999999999999987532 66789999999999999999 9999999
Q ss_pred HHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCC
Q 037510 715 LLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGE 773 (806)
Q Consensus 715 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 773 (806)
++ ..|+. .+|..++.+|.+.|++++|++.|+++++ +.|+ ...+..++.++...|+
T Consensus 527 l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 527 WS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99 67876 4899999999999999999999999988 5674 5677888888877665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=95.42 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNF-TY-----------------STLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
...+...|++++|+..|+++++ ..|+.. ++ ..++..|.+.|++++|+..|+++++. .|
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p 178 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YP 178 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--ST
T ss_pred chhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--Cc
Confidence 3344567899999999999999 667764 32 35677889999999999999999984 45
Q ss_pred Ch----hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 757 NI----ATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 757 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
+. ..+..++.+|.+.|+.++|.+.++.+...
T Consensus 179 ~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 32 46788999999999999999999999874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-08 Score=100.09 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhc----CCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKY----GCIPS-LRSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
|......|...|++++|++.|++.... |..++ ..+|+.+..+|.+.|++++|+..|++.++
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566666677766666665443 11111 34566666666666666666666665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=86.75 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=98.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
.|..+...+...|++++|...++++.+.+ +.+...+..++..+...|++++|...++++...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 45566777777888888888888887653 34567777778888888888888888888776542
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
.+..++..++..+...|++++|...++++.+ ..|+ ..++..++..+...|++++|.+.++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2456777788888888888888888888887 4454 4577888888888888888888888
Q ss_pred HHHH
Q 037510 748 EMLK 751 (806)
Q Consensus 748 ~~~~ 751 (806)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8877
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.8e-10 Score=96.96 Aligned_cols=130 Identities=11% Similarity=0.014 Sum_probs=106.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
|+..+...|++++|+..+++.....+ .++..+..++..|.+.|++++|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--------------------------------~~~~~~~~la~~y~~~~~~~~A 50 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--------------------------------QKSIKGFYFAKLYYEAKEYDLA 50 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--------------------------------HHHTTHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--------------------------------ccHHHHHHHHHHHHHcCCHHHH
Confidence 44556677889999999998876431 1445677899999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHH-HHHH
Q 037510 708 RRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRL-FCKL 784 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~m 784 (806)
++.|++.++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| ++..+..++..|.+.|++++|.+. +++.
T Consensus 51 ~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 51 KKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999 78876 4999999999999999999999999999 567 678899999999999999887665 6888
Q ss_pred HHCCCCCCHhh
Q 037510 785 RQKGLTPTVVT 795 (806)
Q Consensus 785 ~~~g~~p~~~~ 795 (806)
.+ +.|+...
T Consensus 127 l~--l~P~~~~ 135 (150)
T 4ga2_A 127 AK--LFPGSPA 135 (150)
T ss_dssp HH--HSTTCHH
T ss_pred HH--hCcCCHH
Confidence 87 6776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-08 Score=99.64 Aligned_cols=166 Identities=14% Similarity=0.028 Sum_probs=136.6
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
+.+...+..+...+...|++++|...|+++++.. +.+...+..+...+.+.|++++|...++++....+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--------- 183 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--------- 183 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---------
Confidence 3345567777888899999999999999999873 446788999999999999999999999998765421
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEA 742 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 742 (806)
+..........+...++.++|+..|++.++ ..|+. ..+..++..|...|++++|
T Consensus 184 -----------------------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 184 -----------------------TRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------hHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHH
Confidence 122233334457788889999999999999 67876 5899999999999999999
Q ss_pred HHHHHHHHHcCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 743 FNLRDEMLKINLVPN---IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 743 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..|.++++. .|+ ...+..|+..|...|+.++|...+++...
T Consensus 239 ~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 239 LELLFGHLRX--DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999994 453 56789999999999999999999988653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.1e-09 Score=93.52 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=114.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...++++....+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---------------- 71 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---------------- 71 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------------
Confidence 4455566778888888888888877652 34567788888888888888888888888765432
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHH-HHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAG-ICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
++..+..+... +...+...+|+..+++.++ ..|+. ..+..++.++...|++++|+..|+
T Consensus 72 -----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 72 -----------------DNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22222222211 2233344557888888888 66764 578888888999999999999999
Q ss_pred HHHHcCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 748 EMLKINLVPN---IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 748 ~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++++. .|+ ...+..++.++...|+.++|...|++...
T Consensus 133 ~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 NILKV--NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTT--CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHh--CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88884 443 45778888888899999999888887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=112.01 Aligned_cols=152 Identities=10% Similarity=0.008 Sum_probs=105.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIF 644 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 644 (806)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.++.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877652 2346677788888888888888888888888753 34577888888888888888888888
Q ss_pred HHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-
Q 037510 645 LQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN- 723 (806)
Q Consensus 645 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~- 723 (806)
++++++.+. .+...+..++.+|...|++++|.+.|++..+ ..|+.
T Consensus 80 ~~~al~~~p--------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 125 (568)
T 2vsy_A 80 LQQASDAAP--------------------------------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEP 125 (568)
T ss_dssp HHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHhcCC--------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 888877642 2566788888888888888888888888888 56654
Q ss_pred HhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 037510 724 FTYSTLIHGYAAV---GDINEAFNLRDEMLKI 752 (806)
Q Consensus 724 ~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 752 (806)
.++..++.++... |++++|.+.++++++.
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 4778888888888 8888888888888874
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.3e-09 Score=115.70 Aligned_cols=156 Identities=14% Similarity=0.080 Sum_probs=138.0
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 598 CDAGMLNKAFKAYFDMI--------EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
...|++++|++.+++++ +. .+.+...+..+..++...|++++|...++++++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---------------- 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---------------- 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc----------------
Confidence 67899999999999998 43 244567888899999999999999999999998653
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.+...|..++.+|...|++++|++.|+++++ +.|+. ..|..++.+|.+.|++++ ++.|++
T Consensus 465 ----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 465 ----------------WRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred ----------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 2678999999999999999999999999999 77876 589999999999999999 999999
Q ss_pred HHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 749 MLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 749 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
+++ +.| +...|..++.+|.+.|++++|...++++.+ +.|+.
T Consensus 526 al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~ 567 (681)
T 2pzi_A 526 VWS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHF 567 (681)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTH
T ss_pred HHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCccc
Confidence 999 456 677899999999999999999999999987 67774
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.6e-08 Score=90.76 Aligned_cols=185 Identities=12% Similarity=-0.055 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-C-HHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY-PN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP-N-VAICSK 627 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~ 627 (806)
...+..++..+.+.|++++|...|+++.+.... |. ...+..+..+|.+.|++++|+..|+++++..... . ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556677889999999999999999985221 11 3567788899999999999999999999863221 1 124555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH
Q 037510 628 LVSTLCR------------------LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV 689 (806)
Q Consensus 628 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (806)
+..++.. .|++++|...|+++++..+......... .........+ ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----~~l~~~~~~~-----------~~ 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----KRLVFLKDRL-----------AK 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----HHHHHHHHHH-----------HH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----HHHHHHHHHH-----------HH
Confidence 5555554 5789999999999998764322110000 0000000000 01
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
....++..|.+.|++++|+..|+++++ ..|+. .++..++.+|.+.|++++|++.++.+...+
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 223567889999999999999999999 56664 368899999999999999999999998843
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-09 Score=90.48 Aligned_cols=102 Identities=14% Similarity=-0.004 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+.+.|++++|+..|+++++ +.|+. ..|..++.+|...|++++|+..|+++++ +.| ++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHH
Confidence 445666777777777778888887777777 56654 4777777777777888888888877777 445 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
+.+|.+.|++++|...|++..+ +.||..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 7777777888888887777776 455543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-07 Score=87.42 Aligned_cols=165 Identities=10% Similarity=-0.064 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG----MLNKAFKAYFDMIEKGFSPNVAIC 625 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 625 (806)
-+...+..+...+...+++++|.+.|++..+.| ++..+..+...|.. + ++++|++.|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 467778889999999999999999999999875 66778888888887 6 8999999999998865 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh-
Q 037510 626 SKLVSTLCR----LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK- 700 (806)
Q Consensus 626 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 700 (806)
..+...|.. .+++++|..++++..+.+... .++..+..|...|..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------------~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------------AAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------------chHHHHHHHHHHHHcC
Confidence 888888887 889999999999999876320 025688889999988
Q ss_pred ---cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 037510 701 ---SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV-G-----DINEAFNLRDEMLKIN 753 (806)
Q Consensus 701 ---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 753 (806)
.+++++|...|++..+. .++..++..|+..|... | ++++|+..|+++.+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88999999999999994 34556788888888753 3 8999999999999876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-06 Score=92.19 Aligned_cols=388 Identities=7% Similarity=-0.051 Sum_probs=191.0
Q ss_pred HcC-ChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-hhHH
Q 037510 134 QKG-MLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS-MEKA 211 (806)
Q Consensus 134 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 211 (806)
+.| +++.|+.+|+.+...- |. |+++.+..+|++.+.. .|+...|...+.-..+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 3888888888877642 22 8889999999988773 4688888777776666553 3556
Q ss_pred HHHHHHHHHc-CCC-cCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHH
Q 037510 212 LDFVKEMENL-GFE-LNVVTYNSLIDGYV----SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK---QHKMEEAE 282 (806)
Q Consensus 212 ~~~~~~~~~~-~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~ 282 (806)
..+|+..... |.. .+...|...+..+. ..|+.+.+.++|++.... |.. .+..+-..|.. ......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHH
Confidence 6777776653 432 35566776666543 235677788888888763 211 11122111111 11111121
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC--C-----HhHHHHH
Q 037510 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLG--Q-----VCEAKRV 355 (806)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~ 355 (806)
.++.+ . .+.+..|..+++++...-...+...|...+..-...+ - .+.+..+
T Consensus 144 ~~~~~--------------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 144 KIVGD--------------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHH--------------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHH--------------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 11111 1 1123334444443332100012334444443322111 0 2334556
Q ss_pred HHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435 (806)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (806)
|++..... +.+...|...+..+.+.|+.++|.+++++.... |....... .|....+.++. ++.+.+.-..
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHh
Confidence 66665532 444566666666666777777777777777765 33332211 11111111111 2221111000
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLS 515 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (806)
...+.+ .. .. ......+|...+....+.+..+.|..+|+.+ +.. ..+...|...+
T Consensus 272 ----------------~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A 326 (493)
T 2uy1_A 272 ----------------GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCA 326 (493)
T ss_dssp -------------------------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHH
T ss_pred ----------------hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHH
Confidence 000000 00 00 0011234555555555666677777777777 221 12334443322
Q ss_pred HHHHhc-CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 516 DGYCKV-GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALI 594 (806)
Q Consensus 516 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 594 (806)
..-... ++.+.|..+|+... .. .+.+...+...+....+.|+.+.|..+|+.+. .....|...+
T Consensus 327 ~lE~~~~~d~~~ar~ife~al---------~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGL---------LK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHH---------HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHH---------HH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 222222 25777777777662 21 11223444555666667777777777777762 1455666666
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 037510 595 SGWCDAGMLNKAFKAYFDMIE 615 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~ 615 (806)
..-...|+.+.+..+++++.+
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 665667888777777777764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=84.65 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
...+..++..|.+.|++++|++.|++.++ +.|+. .+|..++.+|.+.|++++|++.|+++++ +.| +...|..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg 88 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHH
Confidence 45688899999999999999999999999 67865 5899999999999999999999999999 455 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.+|...|++++|.+.|++..+ +.|+......-+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~ 122 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHH
Confidence 999999999999999999998 7887655444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.6e-07 Score=87.99 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH---
Q 037510 524 LEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSR--ELTSLVDLLAEMQTMGLYPNIVTYGALISGW--- 597 (806)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--- 597 (806)
.++|+.+++.+. . +.| ....|+.-...+...+ +++++++.++.+.... +-+..+|+.-...+
T Consensus 49 s~~aL~~t~~~L---------~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 49 SERALHITELGI---------N--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp SHHHHHHHHHHH---------H--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------H--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 457888887662 1 233 4566777777888888 9999999999999863 22455666555554
Q ss_pred -Hcc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 598 -CDA---GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID--EANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 598 -~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
... +++++++++++++++.. +-+..+|..-..++.+.|.++ +++++++++++.++.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~----------------- 178 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK----------------- 178 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-----------------
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-----------------
Confidence 444 78999999999999874 557888888888888999988 999999999987754
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC------hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHH-HH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGN------VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINE-AF 743 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~-A~ 743 (806)
|..+|+.....+...|+ ++++++.++++++ ..|+. .+|+.+...+.+.|+..+ +.
T Consensus 179 ---------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 179 ---------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp ---------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred ---------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHH
Confidence 77788888888888777 8999999999999 67865 589999999999887544 55
Q ss_pred HHHHHHHHcC-C-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 744 NLRDEMLKIN-L-VPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 744 ~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
++++++.+.+ . ..++..+..++++|.+.|+.++|.++++.+.++ +.|..
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir 292 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIR 292 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGG
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHH
Confidence 6777766532 1 236678889999999999999999999999853 45543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-06 Score=88.44 Aligned_cols=358 Identities=10% Similarity=-0.030 Sum_probs=180.3
Q ss_pred CChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCCC-CHhHHHHHHHHHH----hcCCh
Q 037510 136 GMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGE-GYVALLVYEQMMRV-GIVP-DVFTCSIVVNAYC----KEKSM 208 (806)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~-~~~~-~~~~~~~l~~~~~----~~g~~ 208 (806)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..+.. |..| +...|...+..+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999884 3799999998888877764 35567788877763 4333 4566666665443 34678
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
+.+..+|++.+......-...|...... .+..+...+.+++.+.. +.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 8899999999874211111222222111 11111222222221111 0111122222221
Q ss_pred HhcCCCCCChHhHHHHHHHHHhc--C-----ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 289 KEEDDVIVDEYAYGVLIDGYCKV--G-----KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~~--g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
.... ...+...|...+.---.. | ..+.+..+|++++... +.+...|...+..+.+.|+.++|..+|++...
T Consensus 164 ~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 164 QPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1100 000112232222221111 0 0123444555555432 22344455455555555555555555555554
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ---------GIEP---SVVTYNTLLKGLCRVGDVDEALHLWLMM 429 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 429 (806)
. +.+...|.. |....+.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|.+.
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3 222222211 1111111111 1111110 0000 1234555556666667788888888877
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037510 430 LKRCVCPNEVGYCTLLDILFNKG-DFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI 508 (806)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 508 (806)
.. ...+...|...+..-...+ +.+.|..+|+...+.. +.+...+...+......|+.+.|..+|+.+. ...
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 32 1123334443333333333 5888888888877752 3334455666777777788888888888762 245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMER 536 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (806)
..|...+..-...|+.+.+.++++....
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777766777888888887776643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-08 Score=90.48 Aligned_cols=161 Identities=12% Similarity=-0.025 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNA-YC 203 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~ 203 (806)
+..+...+...|++++|+..|+...+..+ .+...+..+...+...|++++|+..|++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 44566677888999999999998887653 367788888899999999999999998876643 344333222211 12
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR-TAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 282 (806)
..+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233344677777777653 3356777777777888888888888888777765432 3456777777777777777777
Q ss_pred HHHHHHH
Q 037510 283 NMLRRMK 289 (806)
Q Consensus 283 ~~~~~~~ 289 (806)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-08 Score=98.77 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=120.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCC--CHHHHHHHHH
Q 037510 561 VAFKSRELTSLVDLLAEMQTM----GLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKG---FSP--NVAICSKLVS 630 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~~~~~l~~ 630 (806)
.|...|++++|...+.+..+. +-.+ -..+|+.+...|...|++++|+..|++.++.. -.+ ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555544331 1000 12356666777778888888888888776521 011 1356777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
+|.. |++++|+..+++.++........ .....+++.++..|...|++++|+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~ 177 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERL--------------------------RQAAELIGKASRLLVRQQKFDEAAAS 177 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCCh--------------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8878 99999999999887532100000 00134788899999999999999999
Q ss_pred HHHHHHC----CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hcHHHHHHHHHhcCCHHHHHH
Q 037510 711 FSALLLT----GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI------ATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 711 ~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 779 (806)
|++.++. +..+.. .++..++.++...|++++|+..|++.+ . .|+. .....++.++ ..|+.+.+.+
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999873 111112 267778888888899999999999998 3 3422 1234455555 6788776666
Q ss_pred H
Q 037510 780 L 780 (806)
Q Consensus 780 ~ 780 (806)
+
T Consensus 254 ~ 254 (307)
T 2ifu_A 254 V 254 (307)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-06 Score=84.85 Aligned_cols=222 Identities=8% Similarity=-0.040 Sum_probs=141.7
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH----Hhc--
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG--EGYVALLVYEQMMRVGIVPDVFTCSIVVNAY----CKE-- 205 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~-- 205 (806)
+...-++|++.++.++..++. +..+||.-...+...| ++++++..++.++...++ +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 344456899999999887653 6668888888888888 899999999988885432 444555444444 344
Q ss_pred -CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 037510 206 -KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN--GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK----- 277 (806)
Q Consensus 206 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 277 (806)
+++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++.+.++++.+.++ .|..+|+.....+...++
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 67788888888887764 446677777777777777777 77888888877665 467777766666665555
Q ss_pred -HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHhHHH
Q 037510 278 -MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDE-AIRVLNEMLKTG--LEMNLLICNSLINGYCKLGQVCEAK 353 (806)
Q Consensus 278 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 353 (806)
++++++.++++... .+-|...|+.+...+.+.|+... +..+..++...+ -..+...+..+.+.|.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 66666666666654 33455566666555555555332 333444333321 1124455555555565556666666
Q ss_pred HHHHHHhh
Q 037510 354 RVLRCMGD 361 (806)
Q Consensus 354 ~~~~~~~~ 361 (806)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-08 Score=82.55 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=93.2
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 619 SPN-VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 619 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
.|+ ...+...+..|.+.|++++|+..|+++++.++ .+..+|..++.+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~~~~ 56 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--------------------------------ENAILYSNRAAC 56 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHhhH
Confidence 443 45667788889999999999999999987653 277889999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHH
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVS 766 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 766 (806)
|.+.|++++|+..|++.++ +.|+. .+|..++.+|...|++++|++.|+++++ +.| +...+..|..
T Consensus 57 ~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 57 LTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHH
Confidence 9999999999999999999 67876 4899999999999999999999999999 567 4555555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-07 Score=82.82 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
+...+..+...+.+.|++++|...|++++..++. ++..|..++.+|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--------------------------------~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--------------------------------NVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHH
Confidence 3557778888899999999999999999887532 77889999999999
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 701 SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
.|++++|+..|+++++ +.|+. .+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 83 ~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp TTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 9999999999999999 77876 4888999999999999999999999998 456553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=88.47 Aligned_cols=125 Identities=10% Similarity=-0.072 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..+...+...|++++|...+++++ . |+..++..++.+|...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~-------------------------------~~~~~~~~lg~~~~~~g~~ 53 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----D-------------------------------PHSRICFNIGCMYTILKNM 53 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----S-------------------------------CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----C-------------------------------CChHHHHHHHHHHHHcCCH
Confidence 4455666677777777777777663 1 2455777777777778888
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CC-ChhcHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINL--------------VP-NIATYNSLVSGL 768 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~p-~~~~~~~l~~~~ 768 (806)
++|+..|++.++ ..|+. .+|..++.+|...|++++|++.|+++++..- .| ....+..++.+|
T Consensus 54 ~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 54 TEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 888888877777 44554 4777777777788888888888887777320 11 125667777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
.+.|++++|.+.+++..+
T Consensus 132 ~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 788888888888887776
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-07 Score=89.82 Aligned_cols=171 Identities=9% Similarity=0.049 Sum_probs=127.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
.+...+..+...|++++|.+.+.+.++...... ...+..+...+...|++++|...++++.+........
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 151 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV----- 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch-----
Confidence 445567778899999999999999887532211 1234456667788899999999999988653221000
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCC----H-HhHHHHHHHHHhcC
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-GFSPD----N-FTYSTLIHGYAAVG 737 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~----~-~~~~~l~~~~~~~g 737 (806)
.-...+++.++..|...|++++|+..|+++.+. ...|+ . .++..++..|...|
T Consensus 152 ---------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 152 ---------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp ---------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 001348899999999999999999999999832 12233 1 48899999999999
Q ss_pred CHHHHHHHHHHHHHcC----CCC-ChhcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037510 738 DINEAFNLRDEMLKIN----LVP-NIATYNSLVSGLCNSGELDRA-KRLFCKLR 785 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 785 (806)
++++|+++++++++.. ... -..+|..++.+|.+.|++++| ..++++..
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999998732 111 156788999999999999999 78788764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-08 Score=97.91 Aligned_cols=192 Identities=11% Similarity=0.042 Sum_probs=138.6
Q ss_pred cCCHhHHHHHHHHHHHC------CCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 037510 565 SRELTSLVDLLAEMQTM------GLYPNI----VTYGALISGWCDAGMLNKAFKAYFDMIEKGF---SP--NVAICSKLV 629 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~------g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~ 629 (806)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|.++.+... .+ -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666655441 112332 2455566778899999999999999886311 11 145788889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
.+|...|++++|...+++.++...... +. ..-..+++.+..+|.. |++++|+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g-------~~-------------------~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENG-------TP-------------------DTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTT-------CH-------------------HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcC-------CH-------------------HHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 999999999999999999875311100 00 0013478888999988 99999999
Q ss_pred HHHHHHHCCCCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhcHHHHHHHHHhcCCHHHH
Q 037510 710 IFSALLLTGFSPD-------NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVPN-IATYNSLVSGLCNSGELDRA 777 (806)
Q Consensus 710 ~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A 777 (806)
.|++.++. .|+ ..++..++..|.+.|++++|++.|+++++. +..+. ...+..++.++...|++++|
T Consensus 137 ~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 137 LYQQAAAV--FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999873 332 247889999999999999999999999873 11111 23667777888899999999
Q ss_pred HHHHHHHH
Q 037510 778 KRLFCKLR 785 (806)
Q Consensus 778 ~~~~~~m~ 785 (806)
...+++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999987
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.5e-08 Score=105.33 Aligned_cols=149 Identities=9% Similarity=-0.025 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
|++++|.+.++++++.. +.+...+..+...+...|++++|...++++++.+..
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------------- 55 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-------------------------- 55 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--------------------------
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------
Confidence 45555555555555431 223455555555555555555555555555554311
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Ch
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NI 758 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 758 (806)
+..++..++.+|...|++++|.+.|++.++ ..|+. .+|..++.+|...|++++|++.|+++++. .| +.
T Consensus 56 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 125 (568)
T 2vsy_A 56 ------HPEAVARLGRVRWTQQRHAEAAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEP 125 (568)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 344555555555555555555555555555 34443 35555555555555555555555555552 23 34
Q ss_pred hcHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 037510 759 ATYNSLVSGLCNS---GELDRAKRLFCKLRQ 786 (806)
Q Consensus 759 ~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 786 (806)
..+..+..++... |+.++|.+.+++..+
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 4555555555555 555555555555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-08 Score=82.83 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------h
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN--------I 758 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~ 758 (806)
..++..++..+.+.|++++|++.|+++++ +.|+. .+|..++.+|...|++++|++.++++++. .|+ .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHH
Confidence 44788899999999999999999999999 77876 48999999999999999999999999983 332 1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.+|..++.++...|++++|++.|++..+ ..||..+...|
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 3677888899999999999999999887 56777666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-07 Score=92.28 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHH-HHHHH
Q 037510 158 RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYN-SLIDG 236 (806)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~ 236 (806)
..+..+...+.+.|++++|+..|++.+...+ -+...+..+...+.+.|++++|...++++.... |+..... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 3444445555555555555555555554321 133444445555555555555555555544432 2222111 11122
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDE 316 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 316 (806)
+.+.++.+.|...+++..+..+ .+...+..+...+...|++++|++.|+++.+...-..+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 3344444445555555444432 244445555555555555555555555554432111123344444444545555554
Q ss_pred HHHHHHH
Q 037510 317 AIRVLNE 323 (806)
Q Consensus 317 a~~~~~~ 323 (806)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=87.61 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+...|++++|+..|+++++ ..|+. ..|..++.+|...|++++|+..|+++++ +.| ++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHH
Confidence 556778889999999999999999999999 67765 5899999999999999999999999999 456 67888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+.+|...|++++|.+.|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999887
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-06 Score=84.91 Aligned_cols=168 Identities=10% Similarity=0.052 Sum_probs=126.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 593 LISGWCDAGMLNKAFKAYFDMIEKGF-SPNV----AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 593 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
.+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...++++++........
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--------- 151 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--------- 151 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------
Confidence 45667889999999999999987421 2222 133356677778889999999999999853321100
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC-----CCCCCHH-hHHHHHHHHHhcCCHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-----GFSPDNF-TYSTLIHGYAAVGDINE 741 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~-~~~~l~~~~~~~g~~~~ 741 (806)
.-...+++.++.+|...|++++|+..|+++++. +..|... +|..++..|.+.|++++
T Consensus 152 -----------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 3u3w_A 152 -----------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp -----------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 001336899999999999999999999999842 2222232 88999999999999999
Q ss_pred HHHHHHHHHHc----CCCCC-hhcHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 037510 742 AFNLRDEMLKI----NLVPN-IATYNSLVSGLCNSGE-LDRAKRLFCKLRQ 786 (806)
Q Consensus 742 A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 786 (806)
|++.++++++. +..+. ..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 215 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999872 21222 5678899999999995 6999999998753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-07 Score=86.77 Aligned_cols=124 Identities=15% Similarity=0.019 Sum_probs=67.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 592 ALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 592 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
.+...+...|++++|++.|++.+ .|+...+..++.++...|++++|...++++++.+.
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------ 68 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------------ 68 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------------
Confidence 33444455555555555555442 33455555555555555555555555555554321
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--------------CCCCH-HhHHHHHHHHHhc
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--------------FSPDN-FTYSTLIHGYAAV 736 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------------~~p~~-~~~~~l~~~~~~~ 736 (806)
.+..++..++.+|...|++++|++.|+++.+.. ..|+. .++..++.+|...
T Consensus 69 --------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 69 --------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred --------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 134455555555555666666666665555521 11112 3566666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 737 GDINEAFNLRDEMLK 751 (806)
Q Consensus 737 g~~~~A~~~~~~~~~ 751 (806)
|++++|++.|+++++
T Consensus 135 g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 135 EEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666666
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.5e-08 Score=88.74 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=106.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
...|++++|...+++.++..+ .+..+|..++.+|...|++++|+..|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~ 68 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP--------------------------------QNSEQWALLGEYYLWQNDYSNSLLAYR 68 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC--------------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCC--------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356778888888888876542 367789999999999999999999999
Q ss_pred HHHHCCCCCCH-HhHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 713 ALLLTGFSPDN-FTYSTLIHG-YAAVGDI--NEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 713 ~~~~~g~~p~~-~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
++.+ ..|+. ..+..++.+ |...|++ ++|+..++++++. .| +...+..++.+|...|++++|...++++.+
T Consensus 69 ~al~--~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~- 143 (177)
T 2e2e_A 69 QALQ--LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD- 143 (177)
T ss_dssp HHHH--HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-
Confidence 9998 56754 588888888 7899998 9999999999984 45 577888999999999999999999999998
Q ss_pred CCCCCHhhHHHHHHhh
Q 037510 788 GLTPTVVTYNILIDGY 803 (806)
Q Consensus 788 g~~p~~~~~~~li~~~ 803 (806)
..|+......++...
T Consensus 144 -~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 144 -LNSPRINRTQLVESI 158 (177)
T ss_dssp -TCCTTSCHHHHHHHH
T ss_pred -hCCCCccHHHHHHHH
Confidence 566655555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=88.20 Aligned_cols=197 Identities=13% Similarity=-0.058 Sum_probs=145.9
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHccCChHHHHHHHHHHHHcCCCCC---------------
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGAL-------ISGWCDAGMLNKAFKAYFDMIEKGFSPN--------------- 621 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 621 (806)
..++...|.+.|.+..+.. +-....|..+ ...+...++..+++..+.+.+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999863 2246678777 4555555666666666665554 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHH
Q 037510 622 -------VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIV 694 (806)
Q Consensus 622 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 694 (806)
......+...+...|++++|.++|+.+...++ +......+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p---------------------------------~~~~~~~~ 141 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS---------------------------------EHLVAWMK 141 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC---------------------------------HHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------------------------chHHHHHH
Confidence 23444567788899999999999998876542 22266667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHh
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN--IATYNSLVSGLCN 770 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 770 (806)
...+.+.|++++|+..|+...+.. .|. ..++..++.++...|++++|+..|++.......|. ......+..++.+
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 778999999999999998766521 121 23788999999999999999999999986332253 3466778889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 771 SGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.|+.++|...|+++.. ..|+...+..|
T Consensus 221 lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 221 QGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 9999999999999998 67775554444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-06 Score=85.84 Aligned_cols=171 Identities=4% Similarity=-0.085 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H----hHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCC--HHH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-I----VTYGALISGWCDAGMLNKAFKAYFDMIEKGF---SPN--VAI 624 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 624 (806)
+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|+..++++++... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456667778888888888877776532211 1 1233455567788999999999999986321 122 458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFD-FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
++.++..|...|++++|...++++++.. ..|+.. .....+++.++.+|...|+
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~--------------------------~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE--------------------------EFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc--------------------------cchHHHHHhHHHHHHHHhh
Confidence 8899999999999999999999987420 011000 0012588899999999999
Q ss_pred hhhHHHHHHHHHHCC----CCCC-HHhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037510 704 VTDARRIFSALLLTG----FSPD-NFTYSTLIHGYAAVGDINEA-FNLRDEMLK 751 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 751 (806)
+++|+..+++.++.. ..+. ..+|..++.+|.+.|++++| ...+++++.
T Consensus 212 y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999988631 1111 45889999999999999999 788988875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-07 Score=81.69 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+...|++++|...++++++... .+..++..++.++...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------------------------------~~~~~~~~~a~~~~~~ 60 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--------------------------------SNAIYYGNRSLAYLRT 60 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------------------CChHHHHHHHHHHHHc
Confidence 34566677788888999999999998887542 2567888899999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHH--HHHHHHHhcCCHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYN--SLVSGLCNSGELDRA 777 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~A 777 (806)
|++++|...+++..+ ..|+. .+|..++.++...|++++|++.++++++. .| +...+. .++..+.+.|++++|
T Consensus 61 ~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A 136 (166)
T 1a17_A 61 ECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERA 136 (166)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 55654 58889999999999999999999999984 34 444443 334447788999999
Q ss_pred HHHHHHHHH
Q 037510 778 KRLFCKLRQ 786 (806)
Q Consensus 778 ~~~~~~m~~ 786 (806)
.+.+++...
T Consensus 137 ~~~~~~~~~ 145 (166)
T 1a17_A 137 IAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHcccchHH
Confidence 999887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=84.91 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=94.6
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhh
Q 037510 597 WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSL 676 (806)
Q Consensus 597 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 676 (806)
+...|++++|...+++.++.. +.+...+..++.+|...|++++|...++++++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------------------- 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----------------------- 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------------------
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------
Confidence 345678888888888887763 44677888888888888888888888888876542
Q ss_pred HHhhhcCCCCChHHHHHHHHH-HHhcCCh--hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 677 DESARSLCVPNYVVYNIVIAG-ICKSGNV--TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 677 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
.+...+..++.+ +...|++ ++|...|+++++ ..|+. .++..++..|...|++++|+..|+++++
T Consensus 76 ---------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~- 143 (177)
T 2e2e_A 76 ---------ENAELYAALATVLYYQASQHMTAQTRAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMD- 143 (177)
T ss_dssp ---------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ---------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-
Confidence 256677778888 7788888 899999998888 56764 4788888888999999999999999888
Q ss_pred CCCCChhc
Q 037510 753 NLVPNIAT 760 (806)
Q Consensus 753 ~~~p~~~~ 760 (806)
+.|+...
T Consensus 144 -~~p~~~~ 150 (177)
T 2e2e_A 144 -LNSPRIN 150 (177)
T ss_dssp -TCCTTSC
T ss_pred -hCCCCcc
Confidence 4454433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=78.27 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+.+.|++++|+..|+++++.++ .+..+|+.++.+|...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--------------------------------~~~~~~~nlg~~~~~~ 55 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--------------------------------SNITFYNNKAAVYFEE 55 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHhHHHHHHHh
Confidence 34567788889999999999999999987653 2677899999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN--------FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
|++++|++.+++.++ +.|+. .+|..++.++...|++++|++.|++.++ ..||+.....
T Consensus 56 ~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 56 KKFAECVQFCEKAVE--VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp TCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred hhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 999999999999987 44432 2678889999999999999999999988 4567654443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-07 Score=78.38 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
...|..++..+.+.|++++|+..|++.++ ..|+. ..|..++.+|.+.|++++|+..++++++. .| +...+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 45788899999999999999999999999 66765 58999999999999999999999999994 56 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC------CCHhhHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLT------PTVVTYNILID 801 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~------p~~~~~~~li~ 801 (806)
.++...|++++|...+++..+ +. |+.......+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHH
Confidence 999999999999999999887 45 76555444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=80.78 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+.+.|++++|+..|+++++ ..|+. ..|..++.+|...|++++|+..|+++++. .| ++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 455677788899999999999999999999 67765 58999999999999999999999999994 45 67788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
+.+|...|++++|.+.+++..+ +.|+...
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 121 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA--LAAAQPA 121 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHHTCGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCcc
Confidence 9999999999999999999887 4454333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.9e-07 Score=76.56 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.++..++.+|...|++++|+..++++.+ ..|+. .++..++.+|...|++++|++.|+++++
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444444444444 23322 2444444444444444444444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=81.87 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
+...+..+...+...|++++|...|++++..++ .+...|..++.+|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--------------------------------YDSRFFLGLGACRQA 67 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--------------------------------ccHHHHHHHHHHHHH
Confidence 455666777888888888888888888877642 267788888888888
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.|++++|+..|+++++ +.|+. .+|..++.+|...|++++|++.|+++++
T Consensus 68 ~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999988888 66765 4788888888899999999999988887
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-06 Score=78.53 Aligned_cols=129 Identities=13% Similarity=0.030 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
..+..+...+...|++++|...|++.++.. +.+...+..++.++...|++++|...+++.++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------------- 78 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 78 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------
Confidence 356667777888899999999999888763 44678888888889999999999999999887642
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhH--HHHHHHHHhcCCHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTY--STLIHGYAAVGDINEAFN 744 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~--~~l~~~~~~~g~~~~A~~ 744 (806)
.+..++..++.++...|++++|...|+++.+ ..|+. ..+ ..++..+...|++++|++
T Consensus 79 ------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 79 ------------------KYIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566888899999999999999999999988 55654 344 334444778899999999
Q ss_pred HHHHHHH
Q 037510 745 LRDEMLK 751 (806)
Q Consensus 745 ~~~~~~~ 751 (806)
.+.+...
T Consensus 139 ~~~~~~~ 145 (166)
T 1a17_A 139 GDEHKRS 145 (166)
T ss_dssp HHHHHHH
T ss_pred cccchHH
Confidence 9988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-07 Score=83.41 Aligned_cols=160 Identities=14% Similarity=0.018 Sum_probs=91.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDE 678 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (806)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++.+.......
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------- 60 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---------------------- 60 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC----------------------
Confidence 45666666664433322 1122455666666666667777777777666654200000
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 679 SARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSP-D-NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
..+....++..++..|...|++++|...+++..+. +-.| . ..++..++..+...|++++|+..+++.++.
T Consensus 61 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 61 ----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 00012345666777777777777777777776652 1012 1 125677777777777888887777777652
Q ss_pred CC-CCC----hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 753 NL-VPN----IATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 753 ~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.- .++ ..++..+..++...|++++|.+.+++..
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 10 011 2235667777777788888877777754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4e-07 Score=91.88 Aligned_cols=163 Identities=16% Similarity=0.049 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
+++++|+..++...+.. +.+...+..+...+.+.|++++|...|+++++........ ..+... .+.
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------~~~~~~---~~~--- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------SNEEAQ---KAQ--- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------CSHHHH---HHH---
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------ChHHHH---HHH---
Confidence 34445555544433321 1145667777888888888888888888888754321000 000000 000
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Ch
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NI 758 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 758 (806)
+-...+|..++.+|.+.|++++|+..++++++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| +.
T Consensus 193 ----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~ 264 (336)
T 1p5q_A 193 ----ALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK 264 (336)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 00146889999999999999999999999999 67865 5899999999999999999999999999 456 67
Q ss_pred hcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRA-KRLFCKLR 785 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 785 (806)
..+..+..++.+.|+.++| ...+++|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999 45666664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-05 Score=77.40 Aligned_cols=176 Identities=8% Similarity=-0.077 Sum_probs=130.3
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-C-Ch
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG-EGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKE-K-SM 208 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-~~ 208 (806)
..+.+.-++|+++++.++..++. +..+|+.-...+...| .+++++.+++.++...++ +..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 34455667899999999987654 6778888888888888 599999999999986533 566777776666666 6 88
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN--------GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK--- 277 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 277 (806)
++++++++++.+.. +.|..+|+.-.-++.+.|.++ ++.+.++++.+..+ .|..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 89999999998765 446777776666666666665 88888888888765 478888888877777775
Q ss_pred ----HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 278 ----MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 278 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
++++++.++++... .+-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 57778877777765 34466677666555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=6.5e-06 Score=81.41 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=89.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCChH----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhHHHHH
Q 037510 269 TKGYCKQHKMEEAENMLRRMKEEDDVIVDEY----AYGVLIDGYCKVGKVDEAIRVLNEMLKTGLE-MN----LLICNSL 339 (806)
Q Consensus 269 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 339 (806)
+..+...|++++|..++++..+.....|+.. .+..+...+...|++++|...++++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777665433333321 2233555555666777777777777663222 12 2256667
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhC-----CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-cchHHH
Q 037510 340 INGYCKLGQVCEAKRVLRCMGDW-----NLRP-DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ----GIEPS-VVTYNT 408 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ 408 (806)
...|...|++++|...|++..+. +..+ ...+|..+...|.+.|++++|++.+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777665521 1111 1225555666666666666666666655432 11111 234555
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 037510 409 LLKGLCRVGD-VDEALHLWLMML 430 (806)
Q Consensus 409 ll~~~~~~~~-~~~a~~~~~~~~ 430 (806)
+...+.+.|+ .++|...+++.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555663 456665555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.5e-07 Score=75.54 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
..++..++.++...|++++|...+++..+ ..|+. .++..++..|...|++++|+..++++.+. .| +...+..+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 121 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLK 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHH
Confidence 34455555555555555555555555555 33432 35555555555555666666655555552 23 344444555
Q ss_pred HHHHhcCC
Q 037510 766 SGLCNSGE 773 (806)
Q Consensus 766 ~~~~~~g~ 773 (806)
.++.+.|+
T Consensus 122 ~~~~~~~~ 129 (131)
T 2vyi_A 122 IAELKLRE 129 (131)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 55555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=73.32 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
++..++..+...|++++|.+.|+++.+ ..|+ ..++..++..+...|++++|+..++++.+.. ..+..++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 444444455555555555555555544 2232 2344445555555555555555555554421 11334444455555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
...|++++|..+++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-05 Score=76.58 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=164.1
Q ss_pred HhcCChH-HHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHHCCCCCC
Q 037510 519 CKVGNLE-EAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSRE----------LTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 519 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~p~ 586 (806)
.+.|.++ +|+.+.+.+ ....| +..+|+.--..+...+. +++++.+++.+.... +-+
T Consensus 40 ~~~~e~s~eaL~~t~~~-----------L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKn 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQI-----------LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKS 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHH-----------HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHcCCCCHHHHHHHHHH-----------HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCC
Confidence 3455554 788888866 22333 34455543333332222 678889999888763 346
Q ss_pred HhHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 587 IVTYGALISGWCDAG--MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK-IDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
..+|+.-...+...| .+++++..++++++.. +-|...|+.-..++...|. ++++++.++++++.++.
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~--------- 177 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------- 177 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC---------
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC---------
Confidence 778888777787777 4899999999999874 4578888888888888898 69999999999987644
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc--------------CChhhHHHHHHHHHHCCCCCCHH-hHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS--------------GNVTDARRIFSALLLTGFSPDNF-TYST 728 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~-~~~~ 728 (806)
|..+|+.....+.+. +.++++++.+++++. ..|+.. +|+-
T Consensus 178 -----------------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y 232 (331)
T 3dss_A 178 -----------------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFY 232 (331)
T ss_dssp -----------------------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 667787777666655 457899999999999 778764 7877
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChh-cHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 729 LIHGYAAV-----------GDINEAFNLRDEMLKINLVPNIA-TYNSLV---SGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 729 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~---~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
+-..+.+. +.++++++.++++++ +.||.. ++-.++ .+....|..+++..++.++++ +.|..
T Consensus 233 ~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 233 HRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp HHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 76666665 468899999999999 677652 222222 223356888999999999998 78875
Q ss_pred hhH
Q 037510 794 VTY 796 (806)
Q Consensus 794 ~~~ 796 (806)
.-|
T Consensus 309 ~~~ 311 (331)
T 3dss_A 309 AAY 311 (331)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=88.37 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--------------VAICSKLVSTLCRLGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 652 (806)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566667777777888888888877776532211 5788889999999999999999999998865
Q ss_pred CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 037510 653 FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIH 731 (806)
Q Consensus 653 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 731 (806)
+ .+..+|..++.+|...|++++|+..|+++++ +.|+. .++..+..
T Consensus 227 p--------------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 227 S--------------------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 272 (336)
T ss_dssp T--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred C--------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 3 2677889999999999999999999999999 67865 48889999
Q ss_pred HHHhcCCHHHH-HHHHHHHHH
Q 037510 732 GYAAVGDINEA-FNLRDEMLK 751 (806)
Q Consensus 732 ~~~~~g~~~~A-~~~~~~~~~ 751 (806)
++...|++++| ...|++|..
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 557777764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-07 Score=80.58 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+...|++++|+..|++.++ +.|+. ..|..++.+|...|++++|+..|+++++. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 566788899999999999999999999999 67755 58999999999999999999999999994 46 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
..+|...|++++|...+++..+ +.|+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 9999999999999999999987 455543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-07 Score=75.91 Aligned_cols=98 Identities=17% Similarity=0.045 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
.+..++..+.+.|++++|+..|+++++ ..|+. ..|..++.++...|++++|+..|+++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 456678889999999999999999999 67865 5899999999999999999999999999 456 67788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
|.+.|++++|...+++..+ ..|+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCcCC
Confidence 9999999999999999987 56653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=73.26 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...++++++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 81 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP------------- 81 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------------
Confidence 4455666666667777777777777766542 33566666677777777777777777777665432
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcC
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVG 737 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 737 (806)
.+..++..++.++...|++++|.+.|++..+ ..|+. ..+..+..++...|
T Consensus 82 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 -------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHT
T ss_pred -------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhc
Confidence 2455667777777777777777777777776 45554 35556666655544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=74.48 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Chhc
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIAT 760 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 760 (806)
.+...+..++..+...|++++|+..|++.++ ..|+ ..+|..++.+|...|++++|+..++++++. .| +...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 4677888999999999999999999999999 6787 458999999999999999999999999984 45 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+..++.+|...|++++|..++++..+ +.|+.......+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHH
Confidence 88999999999999999999999988 5676544444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=71.87 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
....+..++..+...|++++|...|++..+ ..|+ ...+..++..+...|++++|+..++++.+. .| +...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 345788889999999999999999999998 5664 468899999999999999999999999984 45 67788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
+.++...|++++|.+.+++..+ ..|+.......
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 111 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEG 111 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHH
Confidence 9999999999999999999988 56664443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-06 Score=71.02 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..++..++..+...|++++|...++++.+ ..|+ ..++..++..|...|++++|...++++.+
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555 2232 23455555555555555555555555555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=84.82 Aligned_cols=194 Identities=10% Similarity=-0.080 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
+...+..+...+.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667788899999999999999999998863 3367888899999999999999999999999863 446888999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
++...|++++|...++++.+.++................. .............+.+..+...+... ..|++++|++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA-KKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH-HHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999999988754221100000000000000 00111112222334455555555333 36888999999
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAV-GDINEAFNLRDEMLK 751 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 751 (806)
+++..+ ..|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 158 ~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888887 677765 344444445554 678888988888765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=72.90 Aligned_cols=95 Identities=13% Similarity=-0.017 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+..++..+.+.|++++|...|++.++.++ .+..+|..++.+|.+.|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~a~~~~~~~ 52 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--------------------------------EDARGYSNRAAALAKLM 52 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------------------------CChHHHHHHHHHHHHhc
Confidence 4455566667777777777777777766542 25567777777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++++|+..+++.++ +.|+. .+|..++.+|...|++++|++.|+++++
T Consensus 53 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 53 SFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777 55654 3677777777777777777777777776
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=72.09 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
...+..+...+...|++++|...++++++.. +.+...+..++.++...|++++|...++++.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------- 77 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------------- 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------------
Confidence 3455666666777777788887777777653 33566777777777788888888888887776532
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDI 739 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~ 739 (806)
.+..++..++.++...|++++|...|++..+ ..|+. ..+..++.++...|++
T Consensus 78 -------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 -------------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 2456777777888888888888888888877 45643 4677777777776654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.7e-05 Score=74.01 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=75.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-CHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLG-DLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ-H-KMEE 280 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 280 (806)
+.+..++|+++++++.... +-+..+|+.--..+...| ++++++++++.+....+ .+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 3444456777777776654 234555666666666666 47777777777766544 3556666655555554 5 6666
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD--------EAIRVLNEMLKTGLEMNLLICNSLINGYCKLG 347 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 347 (806)
++++++++.+. .+-+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 66666666654 2334455554444444444333 444445544444322 4444444444333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=74.84 Aligned_cols=96 Identities=16% Similarity=-0.009 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+.+.|++++|...|++++..++ .+...|..++.+|...
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~~ 65 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--------------------------------YDARYFLGLGACRQSL 65 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--------------------------------ccHHHHHHHHHHHHHH
Confidence 34455566667777777888777777776542 2566777777778888
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++++|+..|+++++ +.|+. ..|..++.+|...|++++|++.|+++++
T Consensus 66 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 66 GLYEQALQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888877 55655 3677777888888888888888888776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=74.96 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHH
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYN 762 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 762 (806)
+.+...+..++..+...|++++|+..|++.++ ..|+. ..|..++.+|...|++++|+..++++++. .| ++..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHH
Confidence 35678899999999999999999999999999 56765 58999999999999999999999999994 45 677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.++.+|...|++++|...+++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=79.88 Aligned_cols=168 Identities=15% Similarity=0.027 Sum_probs=105.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhhhhhhhhhhHHHHHhhhH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP-DLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
..|.++++.+.|+...+. .......+..+...+...|++++|...++++++..... +.... . . ......
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~--~--~~~~~~-- 85 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ---I--L--LDKKKN-- 85 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH---H--H--HHHHHH--
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh---h--H--HHHHHH--
Confidence 344555554444322221 01134456667778888899999999998888754221 00000 0 0 000000
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
....++..++.+|...|++++|+..++++++ ..|+. .++..++.+|...|++++|++.|+++++ +.|
T Consensus 86 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p 153 (198)
T 2fbn_A 86 --------IEISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNP 153 (198)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HST
T ss_pred --------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCC
Confidence 0135788899999999999999999999999 56765 5899999999999999999999999998 456
Q ss_pred -ChhcHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 037510 757 -NIATYNSLVSGLCNSGELDRAK-RLFCKLRQKG 788 (806)
Q Consensus 757 -~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 788 (806)
+...+..+..++...|+.+++. ..+..|...|
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6678888888888888888887 5666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-06 Score=78.33 Aligned_cols=188 Identities=9% Similarity=-0.048 Sum_probs=123.6
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH--------------
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCL-------LSNLVKNGEGYVALLVYEQMMRVGIVPDV-------------- 192 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~A~~~~~~m~~~~~~~~~-------------- 192 (806)
..++.+.|.+.|.......+. ....|+.+ ..++...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999987653 67788888 6777777777777777766554 22321
Q ss_pred --------hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--h
Q 037510 193 --------FTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRT--A 262 (806)
Q Consensus 193 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 262 (806)
.........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122334566777788888888887776543 333255555667777788888888877554421 010 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037510 263 VTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD--EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG 328 (806)
Q Consensus 263 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (806)
..+..+..++...|++++|++.|++.... ...|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 35666677777777777777777777643 22132 2345555666677777777777777777653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.5e-07 Score=72.44 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhcHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP---NIATYN 762 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 762 (806)
+...+..++..+...|++++|...|+++.+ ..|+ ..+|..++.++...|++++|++.++++++. .| +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHH
Confidence 556778889999999999999999999998 5565 458899999999999999999999999984 44 467888
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHC
Q 037510 763 SLVSGLCNS-GELDRAKRLFCKLRQK 787 (806)
Q Consensus 763 ~l~~~~~~~-g~~~~A~~~~~~m~~~ 787 (806)
.++.++.+. |++++|.+.+++..+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999999 9999999999999873
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-05 Score=76.75 Aligned_cols=193 Identities=10% Similarity=0.054 Sum_probs=149.9
Q ss_pred HhcCCH-hHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 563 FKSREL-TSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGM----------LNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 563 ~~~~~~-~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
.+.|.+ ++|+++.+.+... .|+ ...|+.--..+...|. +++++.+++.++... +-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 355655 4899999999986 444 4455554443333332 678999999999864 457888888888
Q ss_pred HHHhcCC--HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC-hhhH
Q 037510 631 TLCRLGK--IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN-VTDA 707 (806)
Q Consensus 631 ~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 707 (806)
++.+.|+ +++++.+++++++.++. |..+|+....++...|. .+++
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr--------------------------------Ny~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER--------------------------------NFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHhCcCHHHH
Confidence 8888884 89999999999987644 78899999999999998 5999
Q ss_pred HHHHHHHHHCCCCCCH-HhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc
Q 037510 708 RRIFSALLLTGFSPDN-FTYSTLIHGYAAV--------------GDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS 771 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 771 (806)
++.++++++ ..|+. .+|+.....+... +.++++++.+.+++. +.| |...|+.+-..+.+.
T Consensus 165 l~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 165 LAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 999999999 66765 5888888777765 458899999999998 456 677777666666655
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHhhHH
Q 037510 772 -----------GELDRAKRLFCKLRQKGLTPTVVTYN 797 (806)
Q Consensus 772 -----------g~~~~A~~~~~~m~~~g~~p~~~~~~ 797 (806)
+.++++++.++++.+ +.||. .|.
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~ 274 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWC 274 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHh--hCccc-chH
Confidence 568999999999998 78885 444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=85.43 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444555555555555555555544422 1133444444444444444444444444444432 1233444444444
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 037510 237 YVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~ 255 (806)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-06 Score=78.55 Aligned_cols=157 Identities=12% Similarity=-0.030 Sum_probs=94.1
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCC
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV----GIV-PDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~ 207 (806)
...|++++|.+.++.+.. .+.....+++.+...+...|++++|...|++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356888888885554433 22234567788888888888888888888877652 111 123456666777777788
Q ss_pred hhHHHHHHHHHHHc----CCC--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcC
Q 037510 208 MEKALDFVKEMENL----GFE--LNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGIS-RT----AVTYTTLTKGYCKQH 276 (806)
Q Consensus 208 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g 276 (806)
+++|...+++..+. +-. .....+..+...+...|++++|...+++....... .+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88777777776543 101 12345666677777777777777777766532100 11 123455666666667
Q ss_pred CHHHHHHHHHHHHh
Q 037510 277 KMEEAENMLRRMKE 290 (806)
Q Consensus 277 ~~~~a~~~~~~~~~ 290 (806)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.1e-07 Score=75.60 Aligned_cols=111 Identities=19% Similarity=0.111 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--------H-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD--------N-----FTYSTLIHGYAAVGDINEAFNLRDEMLKI--- 752 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 752 (806)
..+...+..+.+.|++++|+..|++.++ +.|+ . ..|..++.++.+.|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3667788899999999999999999999 6676 1 28999999999999999999999999983
Q ss_pred --CCCCC-hhcH----HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHHHHHH
Q 037510 753 --NLVPN-IATY----NSLVSGLCNSGELDRAKRLFCKLRQ-----KGLTPTVVTYNILID 801 (806)
Q Consensus 753 --~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~ 801 (806)
.+.|+ ...| ...+.+|...|++++|+..|++.++ .|+.+........+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 11674 5577 8999999999999999999999865 467676665555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=75.79 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+.+.|++++|+..|+++++..+ .+...|..++.+|...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~l~~~~~~~ 58 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------------------------------ANPIYLSNRAAAYSAS 58 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------cCHHHHHHHHHHHHHc
Confidence 34455555556666666666666666655432 1445566666666666
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++++|+..|++.++ +.|+. .+|..++.+|...|++++|++.|+++++
T Consensus 59 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 59 GQHEKAAEDAELATV--VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666666 44543 3566666666666666666666666665
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=76.02 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHC-------CC---------CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLT-------GF---------SPDN-FTYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~---------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
...+...+..+.+.|++++|+..|++.++. +- .|.. ..|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 447788899999999999999999999983 00 3444 488999999999999999999999999
Q ss_pred HcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHH
Q 037510 751 KINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV-TYNILI 800 (806)
Q Consensus 751 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li 800 (806)
+. .| ++..|..++.+|...|++++|...+++..+ +.|+.. .....+
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 94 56 677899999999999999999999999998 688765 444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=72.63 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----hhc
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINL--VPN----IAT 760 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~ 760 (806)
...+..++..+...|++++|...|+++.+ ..|+ ..++..++..|...|++++|+..++++++... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34788899999999999999999999998 4565 45889999999999999999999999998421 112 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+..++.++.+.|++++|.+.++++.+ ..|+...+..+-.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 88999999999999999999999988 5566655554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-06 Score=72.91 Aligned_cols=98 Identities=13% Similarity=-0.053 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH
Q 037510 620 PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC 699 (806)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 699 (806)
.+...+..+...+...|++++|...+++++...+ .+..+|..++.++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------------------------------~~~~~~~~l~~~~~ 54 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------------------------------LVAVYYTNRALCYL 54 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--------------------------------CcHHHHHHHHHHHH
Confidence 3566677777777777777777777777776542 25567777788888
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 700 KSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|++++|...+++.++ ..|+. .+|..++.+|...|++++|+..|+++++
T Consensus 55 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 55 KMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888877 55654 4777788888888888888888888776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=6.6e-06 Score=67.99 Aligned_cols=95 Identities=22% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+..++..+...|++++|...++++....+ .+...+..++.++...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~ 52 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP--------------------------------HNHVLYSNRSAAYAKKG 52 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------------------------CcHHHHHHHHHHHHhhc
Confidence 3445555556666666666666666655431 14445666666666666
Q ss_pred ChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++++|...+++..+ ..|+ ...+..++.++...|++++|.+.++++.+
T Consensus 53 ~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 53 DYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666 3444 33566666666666666666666666665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-06 Score=70.96 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATYN 762 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 762 (806)
+..++..+...|++++|...|+++.+ ..|+.. ++..++.++...|++++|+..|+++++. .|+ +..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 44567888999999999999999998 456654 7888999999999999999999999984 353 56688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
.++.++.+.|++++|...++++.+ ..|+....
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 112 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVAT--QYPGSDAA 112 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTSHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCChHH
Confidence 899999999999999999999987 45664433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=71.74 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..+...+.+.|++++|...++++++..+ .+...|..++.++...|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------------------~~~~a~~~lg~~~~~~g~~ 67 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP--------------------------------EREEAWRSLGLTQAENEKD 67 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHHcCCH
Confidence 45567778899999999999999988653 2778899999999999999
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
++|+..|++.++ +.|+. .++..++.+|...|++++|+..++++++ +.|+
T Consensus 68 ~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 68 GLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcC
Confidence 999999999999 77875 4899999999999999999999999987 4453
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=72.13 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+...|++++|...++++.+..+ .+..++..++..|...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~la~~~~~~ 51 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--------------------------------TNMTYITNQAAVYFEK 51 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------------------------------ccHHHHHHHHHHHHHh
Confidence 34566777888888999999999988887542 2566788888999999
Q ss_pred CChhhHHHHHHHHHHCCCCCC--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPD--------NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
|++++|...++++.+. .|+ ..++..++.+|...|++++|.+.|+++.+. .|+......+..+.
T Consensus 52 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 52 GDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp TCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 9999999999998873 332 457888999999999999999999999984 46665555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=72.60 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=77.6
Q ss_pred hcCChhhHHHHHHHHHHCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 700 KSGNVTDARRIFSALLLTGF-SPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
..|++++|+..|++.++.+. .|+. .+|..++.+|...|++++|+..|+++++. .| ++..+..++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999321 3554 48999999999999999999999999984 45 67788999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHhhHHHHHHhhh
Q 037510 777 AKRLFCKLRQK-GLTPTVVTYNILIDGYC 804 (806)
Q Consensus 777 A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 804 (806)
|...+++..+. .-.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999998763 22334444555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-06 Score=75.35 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=87.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFS-P--------------NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
.+..+...+...|++++|+..|++.++.... | ....+..+..++...|++++|...++++++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445555566666666666666666653211 1 026777888888899999999999998887642
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHG 732 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 732 (806)
.+..++..++.+|...|++++|...|++.++ +.|+. .++..+..+
T Consensus 120 --------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 120 --------------------------------NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 165 (198)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred --------------------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHH
Confidence 2667888888999999999999999999988 66765 477778888
Q ss_pred HHhcCCHHHHH-HHHHHHHH
Q 037510 733 YAAVGDINEAF-NLRDEMLK 751 (806)
Q Consensus 733 ~~~~g~~~~A~-~~~~~~~~ 751 (806)
+...++.+++. ..+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77777777666 55555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=68.01 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+..++..+...|++++|...++++++... .+..++..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~~a~~~~~~~ 54 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--------------------------------EESKYWLMKGKALYNLE 54 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--------------------------------CCHHHHHHHHHHHHHcc
Confidence 3444555566666666666666666655432 14455666666666777
Q ss_pred ChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPD---NFTYSTLIHGYAAV-GDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 751 (806)
++++|...|++..+ ..|+ ..++..++.+|... |++++|++.++++++
T Consensus 55 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 55 RYEEAVDCYNYVIN--VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CHHHHHHHHHHHHH--TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHH--hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 77777777777766 4454 34666677777777 777777777777666
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.7e-06 Score=73.73 Aligned_cols=138 Identities=17% Similarity=0.093 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
.++..+...+...|++++|...+++..+...... + ......++..++..+...|
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~-------------------~~~~~~~~~~l~~~~~~~g 63 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------D-------------------KAAERIAYSNLGNAYIFLG 63 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------C-------------------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-------C-------------------chHHHHHHHHHHHHHHHcC
Confidence 3455566666677777777777776654310000 0 0001236677788888888
Q ss_pred ChhhHHHHHHHHHHCC-CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhcHHHHHHHHHhcC
Q 037510 703 NVTDARRIFSALLLTG-FSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKI----NLVP-NIATYNSLVSGLCNSG 772 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 772 (806)
++++|...+++..+.. ..++ ..++..++..+...|++++|++.++++++. +..+ ....+..+...+...|
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 8888888888876531 0111 236778888888888888888888888762 1111 2346677888888889
Q ss_pred CHHHHHHHHHHHHH
Q 037510 773 ELDRAKRLFCKLRQ 786 (806)
Q Consensus 773 ~~~~A~~~~~~m~~ 786 (806)
++++|.+++++..+
T Consensus 144 ~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 144 NHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=68.92 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
+...+..+...+...|++++|...++++++....+. -...++..++.+|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------------~~~~~~~~~a~~~~~ 77 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----------------------------DQAVLHRNRAACHLK 77 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------------------------HHHHHHHHHHHHHHH
Confidence 445555566666666666666666666665431100 003456666667777
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.|++++|+..+++..+ ..|+. ..|..++.+|...|++++|++.|+++++
T Consensus 78 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 78 LEDYDKAETEASKAIE--KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp TTCHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHh--hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766 44543 4666677777777777777777777776
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=92.23 Aligned_cols=119 Identities=11% Similarity=0.074 Sum_probs=96.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
+...+.+.|++++|.+.++++++..+ .+..+|..++.+|.+.|++++|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p--------------------------------~~~~~~~~lg~~~~~~g~~~~A 59 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP--------------------------------SNAIYYGNRSLAYLRTECYGYA 59 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC--------------------------------ccHHHHHHHHHHHHHhcCHHHH
Confidence 34456678999999999999887642 2677999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH--HHhcCCHHHHHHHHH
Q 037510 708 RRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG--LCNSGELDRAKRLFC 782 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 782 (806)
++.++++++ +.|+. .+|..++.+|...|++++|++.|+++++. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 60 ~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 60 LGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999 67875 58999999999999999999999999984 45 45566666666 888999999999988
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-05 Score=78.93 Aligned_cols=202 Identities=8% Similarity=-0.042 Sum_probs=143.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCC
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMGLYPN----------------IVTYGALISGWCDAGMLNKAFKAYFDMIEKG-FSPN 621 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 621 (806)
...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+.++.+.- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999987532211 1246778899999999999999999887521 1122
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH
Q 037510 622 V----AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG 697 (806)
Q Consensus 622 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 697 (806)
. .+.+.+...+...|++++|..++++........ ........++..++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------------------------KRVFLKHSLSIKLATL 144 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------------------------SCCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------------------CccHHHHHHHHHHHHH
Confidence 2 223334444556789999999998876421000 0001124577889999
Q ss_pred HHhcCChhhHHHHHHHHHHC--C--CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--hhcHHHHHH
Q 037510 698 ICKSGNVTDARRIFSALLLT--G--FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLV-P-N--IATYNSLVS 766 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~--g--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-p-~--~~~~~~l~~ 766 (806)
|...|++++|..+++++... + -.|.. .++..++..|...|++++|..+++++... .+. | . ...+..++.
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 99999999999999998764 1 12333 37899999999999999999999998762 111 1 1 245667777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037510 767 GLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+...|++++|...+.+..+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 88899999999998887653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.2e-05 Score=82.57 Aligned_cols=175 Identities=7% Similarity=-0.013 Sum_probs=140.8
Q ss_pred hcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037510 564 KSR-ELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGM----------LNKAFKAYFDMIEKGFSPNVAICSKLVSTL 632 (806)
Q Consensus 564 ~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 632 (806)
+.| ..++|++.++++.+.. +-+...|+.-..++...|+ ++++++.++++++.. +-+..+|..-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344 4568899999998863 2245567766666666666 899999999999874 44788898888899
Q ss_pred HhcC--CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC-ChhhHHH
Q 037510 633 CRLG--KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG-NVTDARR 709 (806)
Q Consensus 633 ~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~ 709 (806)
.+.| ++++++++++++++.++. |..+|+....++.+.| .++++++
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~--------------------------------N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER--------------------------------NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccc--------------------------------cccHHHHHHHHHHHcCCChHHHHH
Confidence 9999 779999999999987644 7889999999999999 8999999
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCC
Q 037510 710 IFSALLLTGFSPDN-FTYSTLIHGYAAV--------------GDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 710 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
.++++++ ..|+. .+|+....++.+. +.++++++.+++++. +.| |...|+.+...+.+.|+
T Consensus 166 ~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 166 FTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHH--HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 9999998 67765 5888888887763 567999999999998 456 77888888888888887
Q ss_pred HHH
Q 037510 774 LDR 776 (806)
Q Consensus 774 ~~~ 776 (806)
.++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=6.6e-06 Score=87.24 Aligned_cols=119 Identities=14% Similarity=0.052 Sum_probs=81.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
...+.+.|++++|++.|+++++.. +.+...+..+..+|.+.|++++|...++++++.++.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------------- 72 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------------------- 72 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------
Confidence 334556778888888888777752 335777777788888888888888888887776422
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHH--HHhcCCHHHHHHHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHG--YAAVGDINEAFNLRD 747 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~--~~~~g~~~~A~~~~~ 747 (806)
+..+|..++.+|...|++++|++.|+++++ ..|+. .++..+..+ +.+.|++++|++.++
T Consensus 73 -------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 -------------YIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566777778888888888888888888877 45654 355555555 777788888888877
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.18 E-value=6.9e-06 Score=70.17 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..+...+..+.+.|++++|+..|++.++..+..... ..+.. .+.+..+|+.+..++.+.|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------~a~~~-----~~~~a~a~~n~g~al~~Lg 71 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------EAFDH-----AGFDAFCHAGLAEALAGLR 71 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------SCCCH-----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------hhhhh-----ccchHHHHHHHHHHHHHCC
Confidence 345566777889999999999999998765431000 00000 0013348999999999999
Q ss_pred ChhhHHHHHHHHHHCCC-------CCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGF-------SPDNF-TY----STLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~-------~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++++|+..+++.++ + .|+.. +| ...+.++...|++++|+..|+++++
T Consensus 72 r~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 72 SFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999 7 89875 88 9999999999999999999999998
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=85.22 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+.+.|++++|...|+++++....... ...+... ... .-...+|..+..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~---~~~-------~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-------LSEKESK---ASE-------SFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-------CCHHHHH---HHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-------CChHHHH---HHH-------HHHHHHHHHHHHHHHHh
Confidence 456667777788888888888888887764321100 0000000 000 00245888999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
|++++|+..++++++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| +...+..+..++.+.|+.++|.+
T Consensus 331 g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 331 REYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 67765 4899999999999999999999999998 566 66788889999999999988775
Q ss_pred -HHHHHH
Q 037510 780 -LFCKLR 785 (806)
Q Consensus 780 -~~~~m~ 785 (806)
.+.+|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 455554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.15 E-value=9.2e-06 Score=82.79 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+..+|..+..+|.+.|++++|+..++++++ +.|+. .+|..++.+|...|++++|++.|+++++ +.| +...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 456889999999999999999999999999 67865 4899999999999999999999999998 456 66677788
Q ss_pred HHHHHhcCCHHHHHH
Q 037510 765 VSGLCNSGELDRAKR 779 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~ 779 (806)
..++.+.|+.+++.+
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=70.63 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+..+|..++.+|.+.|++++|+..++++++ +.|+.. +|..++.+|...|++++|+..|+++++ +.|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 456889999999999999999999999999 678764 899999999999999999999999999 45643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-06 Score=73.34 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=75.7
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCC-ChhcHHHHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDI----------NEAFNLRDEMLKINLVP-NIATYNSLVS 766 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 766 (806)
.+.+.+++|++.+++.++ +.|+. ..|..++.++...|++ ++|+..|+++++ +.| +...|+.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 345667888888888888 66765 4777788888877654 488888888888 566 5567888888
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 767 GLCNSG-----------ELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 767 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
+|...| ++++|.+.|++.++ +.|+...|...+...-
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 888764 78888888888888 7888888877766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=71.06 Aligned_cols=137 Identities=14% Similarity=0.044 Sum_probs=96.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFS-PN----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
++..+...+...|++++|...+++.++.... ++ ..++..+...+...|++++|...+++..+.....+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 83 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------- 83 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------
Confidence 4556666677777777777777777653100 11 24667778888889999999999888775311000
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCC
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPD-NFTYSTLIHGYAAVGD 738 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~ 738 (806)
.......++..++..+...|++++|.+.+++..+. +..+. ..++..++..|...|+
T Consensus 84 -------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 84 -------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 00012346778889999999999999999988763 11112 1378889999999999
Q ss_pred HHHHHHHHHHHHH
Q 037510 739 INEAFNLRDEMLK 751 (806)
Q Consensus 739 ~~~A~~~~~~~~~ 751 (806)
+++|++.++++++
T Consensus 145 ~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 145 HDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.9e-05 Score=63.98 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
..+...+...|++++|...++++++..+.. .....++..++.++...|+++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------------~~~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----------------------------VYTPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----------------------------TTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------------------------cccHHHHHHHHHHHHHhccHH
Confidence 345677888999999999999988764321 001147778899999999999
Q ss_pred hHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 706 DARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+|+..|+++++ ..|+. .++..++.++...|++++|+..|+++++. .|+.
T Consensus 57 ~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 109 (129)
T 2xev_A 57 LAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGS 109 (129)
T ss_dssp HHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTS
T ss_pred HHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCC
Confidence 99999999998 55664 47889999999999999999999999984 4543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-05 Score=81.47 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--------------VAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
..|..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++.++
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455566666667777777777777666421111 57888899999999999999999999988653
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHG 732 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 732 (806)
.+..+|..++.+|...|++++|+..|+++++ +.|+.. ++..+..+
T Consensus 349 --------------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 349 --------------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred --------------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 2677888999999999999999999999999 778765 88889999
Q ss_pred HHhcCCHHHHHH-HHHHHHH
Q 037510 733 YAAVGDINEAFN-LRDEMLK 751 (806)
Q Consensus 733 ~~~~g~~~~A~~-~~~~~~~ 751 (806)
+.+.|++++|.. .+++|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 999998887764 5555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-06 Score=83.64 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
+|..+..+|.+.|++++|+..+++.++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| +...+..|...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 788899999999999999999999999 67865 5899999999999999999999999987 456 45566666655
Q ss_pred -HHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 768 -LCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 768 -~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
....+..+++..+|.+|.. ..|+
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~--~~p~ 331 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFK--GKDE 331 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhC--CCCC
Confidence 3455778889999999886 4454
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=77.26 Aligned_cols=126 Identities=7% Similarity=-0.099 Sum_probs=63.4
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcCh----------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSL----------------RSCNCLLSNLVKNGEGYVALLVYEQMMRVGI-VPD 191 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~ 191 (806)
.+.+.+.|++++|++.|..+.+.....+. .++..++..|.+.|++++|.+.+.++.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567788888888888888765332111 1355666667777777777776666544210 111
Q ss_pred Hh----HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037510 192 VF----TCSIVVNAYCKEKSMEKALDFVKEMENL----GFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTC 254 (806)
Q Consensus 192 ~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (806)
.. +.+.+...+...|+++.|..++...... +..+ -..++..|...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 11 1112222223345555555555554321 1111 12344445555555555555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=7e-06 Score=69.97 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=87.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh--------
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV-------- 704 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------- 704 (806)
.+.+.+++|.+.+++.++..+ .+...|+.++.++...+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P--------------------------------~~aea~~n~G~~l~~l~~~~~g~~al~ 60 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP--------------------------------LDADNLTRWGGVLLELSQFHSISDAKQ 60 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHHhcccchhhhhHh
Confidence 456778899999999887753 3788999999999988775
Q ss_pred --hhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 037510 705 --TDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG-----------DINEAFNLRDEMLKINLVPNIATYNSLVSGLCN 770 (806)
Q Consensus 705 --~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 770 (806)
++|+..|++.++ +.|+.. +|..++.+|...| ++++|++.|+++++ +.|+...|...+..
T Consensus 61 ~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~--- 133 (158)
T 1zu2_A 61 MIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM--- 133 (158)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH---
Confidence 599999999999 889874 9999999999875 89999999999999 67876655443322
Q ss_pred cCCHHHHHHHHHHHHHC
Q 037510 771 SGELDRAKRLFCKLRQK 787 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~ 787 (806)
.++|.++.-.+...
T Consensus 134 ---~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 134 ---TAKAPQLHAEAYKQ 147 (158)
T ss_dssp ---HHTHHHHHHHHHHS
T ss_pred ---HHhCHhccCccccc
Confidence 24444544444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=80.53 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.|..+..+|.+.|++++|+..++++++.+. .+..+|..++.+|...|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~a~~~lg~a~~~~g~ 279 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------------------------------KNPKALFRRGKAKAELGQ 279 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHHcCC
Confidence 778899999999999999999999988653 267789999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGY-AAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 751 (806)
+++|+..|+++++ +.|+.. ++..|.... ...+..+++...|++|..
T Consensus 280 ~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 280 MDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999998 778764 666666653 345678888999999987
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00012 Score=79.03 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK----------IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
...++|++.++++++.+ +-+...|+.-..++...|+ +++++++++++++.+++
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---------------- 105 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---------------- 105 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----------------
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----------------
Confidence 34568899999999874 3356778777777777777 89999999999987644
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC--ChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcC-CHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSG--NVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVG-DINEAFNLR 746 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~ 746 (806)
+..+|+....++.+.| +++++++.++++++ ..|.. .+|+.-..++.+.| .++++++.+
T Consensus 106 ----------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 106 ----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp ----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 7789999999999999 66999999999999 66765 59999999999999 899999999
Q ss_pred HHHHHcCCCC-ChhcHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCC
Q 037510 747 DEMLKINLVP-NIATYNSLVSGLCNS--------------GELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 747 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~ 792 (806)
+++++. .| |...|+.....+.+. +++++|.+++++.+. +.|+
T Consensus 168 ~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~ 224 (567)
T 1dce_A 168 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPN 224 (567)
T ss_dssp HTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSS
T ss_pred HHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCC
Confidence 999984 45 777888877777663 567999999999887 5665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.5e-05 Score=77.68 Aligned_cols=121 Identities=8% Similarity=-0.000 Sum_probs=92.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEK---------------GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
+..+...+.+.|++++|++.|+++++. .-+.+...|..+..+|.+.|++++|+..++++++.++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 445555566666666666666666641 0122467888899999999999999999999998653
Q ss_pred CChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHH
Q 037510 655 PDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGY 733 (806)
Q Consensus 655 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 733 (806)
.+..+|..++.+|...|++++|+..|+++++ +.|+. ..+..+..++
T Consensus 305 -------------------------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 305 -------------------------------SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVK 351 (370)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred -------------------------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 2677888999999999999999999999999 67765 4777788877
Q ss_pred HhcCCHHHHHH
Q 037510 734 AAVGDINEAFN 744 (806)
Q Consensus 734 ~~~g~~~~A~~ 744 (806)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-06 Score=68.71 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------h
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-------I 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~ 758 (806)
+...+..++..+...|++++|+..|++.++ ..|+. .+|..++.+|...|++++|++.++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 456788899999999999999999999999 66754 5899999999999999999999999998 5564 4
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
..+..+..++...|+.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 55667777777777777776655543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00015 Score=61.71 Aligned_cols=113 Identities=12% Similarity=-0.020 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037510 636 GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALL 715 (806)
Q Consensus 636 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 715 (806)
+++++|..+|++..+.+.. + .. |...|...+..++|.+.|++..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--------------------------------~--a~--lg~~y~~g~~~~~A~~~~~~Aa 52 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--------------------------------F--GC--LSLVSNSQINKQKLFQYLSKAC 52 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--------------------------------T--HH--HHHHTCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--------------------------------h--hh--HHHHHHcCCCHHHHHHHHHHHH
Confidence 4678899999998887622 2 33 7788888888999999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 037510 716 LTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQK 787 (806)
Q Consensus 716 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 787 (806)
+.| +..++..|...|.. .+++++|+++|+++.+.| ++..+..|...|.. .++.++|.+++++..+.
T Consensus 53 ~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 53 ELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 953 56788899999988 899999999999999865 67788889999998 89999999999999987
Q ss_pred CCC
Q 037510 788 GLT 790 (806)
Q Consensus 788 g~~ 790 (806)
|..
T Consensus 127 g~~ 129 (138)
T 1klx_A 127 GSE 129 (138)
T ss_dssp TCH
T ss_pred CCH
Confidence 643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=64.99 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=42.4
Q ss_pred cCChhHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037510 205 EKSMEKALDFVKEMENLG--FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 205 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (806)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++..+..+ .+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 122334455555555555555555555555555433 23445555555555555555555
Q ss_pred HHHHHHHhc
Q 037510 283 NMLRRMKEE 291 (806)
Q Consensus 283 ~~~~~~~~~ 291 (806)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0001 Score=77.48 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
.+..+|++++|..++++.++.. +-|++ +....+++.|+.+|..+|++++|
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H---------------------------p~~a~~~~nLa~~y~~~g~~~eA 370 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTN---------------------------LYVLRLLSIASEVLSYLQAYEEA 370 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTS---------------------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCC---------------------------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 3456788888888887776421 11111 01235789999999999999999
Q ss_pred HHHHHHHHHC-----C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----hhcHHHHHHHHHhcCC
Q 037510 708 RRIFSALLLT-----G-FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI---NLVPN----IATYNSLVSGLCNSGE 773 (806)
Q Consensus 708 ~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~ 773 (806)
+.++++.++. | -.|+. .+++.|+..|..+|++++|+.+++++++. -+-|| ..+...|..++...|+
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999998753 2 23443 38999999999999999999999999861 12233 2355677788889999
Q ss_pred HHHHHHHHHHHHH
Q 037510 774 LDRAKRLFCKLRQ 786 (806)
Q Consensus 774 ~~~A~~~~~~m~~ 786 (806)
+++|...+.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00032 Score=59.63 Aligned_cols=111 Identities=14% Similarity=-0.001 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
+++++|++.|++..+.| .++.. +...|...+.+++|..+|++..+.+
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---------------------------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----------------------------
Confidence 35677777777777765 33333 5566666667777777777777664
Q ss_pred hcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 037510 681 RSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKI 752 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 752 (806)
++..+..|...|.. .+++++|.+.|++..+.| +..++..|...|.. .+++++|+++|+++.+.
T Consensus 56 ------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 ------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 45567777777776 677888888888887743 45567777777777 77888888888888776
Q ss_pred C
Q 037510 753 N 753 (806)
Q Consensus 753 ~ 753 (806)
|
T Consensus 127 g 127 (138)
T 1klx_A 127 G 127 (138)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.9e-05 Score=60.56 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 706 DARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
+|+..|++.++ ..|+. ..+..++..|...|++++|+..|+++++. .| +...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666666 44543 36666666666667777777777666663 33 445566666666666777777766666
Q ss_pred HHH
Q 037510 784 LRQ 786 (806)
Q Consensus 784 m~~ 786 (806)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=57.20 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...+..++..+...|++++|+..|++.++ ..|+. .++..++.+|...|++++|+..++++++. .| +...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 345777788888889999999999998888 55654 57888888888999999999999988883 45 55666667
Q ss_pred HHHHHhcC
Q 037510 765 VSGLCNSG 772 (806)
Q Consensus 765 ~~~~~~~g 772 (806)
..++.+.|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66665543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.2e-05 Score=61.06 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+...+..++..|...|++++|+..|++.++ ..|+. .+|..++.+|...|++++|+..|+++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999999 66765 5899999999999999999999999987
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.9e-05 Score=63.27 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+...|++++|...++++++..+ .+..++..++.+|...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~lg~~~~~~ 51 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--------------------------------QNPVGYSNKAMALIKL 51 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------------CCHHHHHHHHHHHHHh
Confidence 44555666666777777777777777665432 2455667777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-------FTYSTLIHGYAAVGDINEAFNLR 746 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~ 746 (806)
|++++|+..+++.++ +.|+. .++..++.++...|++++|++.+
T Consensus 52 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 52 GEYTQAIQMCQQGLR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp TCHHHHHHHHHHHHT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred cCHHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 777777777777776 55653 24555555555555555554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=76.03 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=95.1
Q ss_pred HHHccCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhh
Q 037510 596 GWCDAGMLNKAFKAYFDMIEK---GFSP----NVAICSKLVSTLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAI 665 (806)
Q Consensus 596 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~ 665 (806)
.+...|++++|..++++.++. -+-| -..+++.|+.+|..+|++++|..+++++++.. +-|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~--------- 388 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN--------- 388 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT---------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC---------
Confidence 345678888888888877752 1112 24577888888999999999999998876420 1111
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC---CCCCCHH----hHHHHHHHHHhcCC
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT---GFSPDNF----TYSTLIHGYAAVGD 738 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~ 738 (806)
.+....+++.|+..|..+|++++|+.+++++++. -+.||.. +...+..++...|+
T Consensus 389 ------------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 ------------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 0112446899999999999999999999998753 2335542 66788888899999
Q ss_pred HHHHHHHHHHHHH
Q 037510 739 INEAFNLRDEMLK 751 (806)
Q Consensus 739 ~~~A~~~~~~~~~ 751 (806)
+++|..+|.++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=57.73 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.++.++..++.+|...|++++|+..|+++++ ..|+. .+|..++.+|...|++++|++.|+++++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3677888899999999999999999999998 66765 4888999999999999999999999887
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00059 Score=52.75 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..+...+...|++++|...+++.++..+ .+..++..++.++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~l~~~~~~~ 56 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------------NNAEAWYNLGNAYYKQ 56 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------------------------CCHHHHHHHHHHHHHH
Confidence 44556666667777777777777777765432 1455667777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAV 736 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 736 (806)
|++++|...|++..+ ..|+. .++..++.++.+.
T Consensus 57 ~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 57 GDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhc
Confidence 777777777777777 45544 3566666655543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00045 Score=54.77 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhH
Q 037510 720 SPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK-GLTPTVVTY 796 (806)
Q Consensus 720 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 796 (806)
.|+. .++..++.+|...|++++|+..|+++++. .| ++..|..++.+|...|++++|.+.+++..+. .-.++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 3554 58999999999999999999999999994 45 5778999999999999999999999998752 112444444
Q ss_pred HHHHHh
Q 037510 797 NILIDG 802 (806)
Q Consensus 797 ~~li~~ 802 (806)
..+-..
T Consensus 81 ~~l~~~ 86 (100)
T 3ma5_A 81 SELQDA 86 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0018 Score=63.70 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYN 762 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 762 (806)
+.++.+|..+...+...|++++|...++++++ +.|+..+|..++..+.-.|++++|++.|+++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 45777888887777778999999999999999 568877888889999999999999999999988 567666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0011 Score=65.16 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=63.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 722 DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 44588888888888899999999999999954 8887888889999999999999999999988 7888877653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=68.46 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred hcCChhhHHHHHHHHHHC---CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CCC-hhcHHHHH
Q 037510 700 KSGNVTDARRIFSALLLT---GFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLK-----INL-VPN-IATYNSLV 765 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~ 765 (806)
..|++++|+.++++.++. -+.|+. .+++.|+.+|...|+|++|+.+++++++ .|- .|+ ..+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 568999999999998763 233443 3899999999999999999999999986 231 222 35789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0016 Score=67.17 Aligned_cols=64 Identities=6% Similarity=-0.037 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHC-----C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLT-----G-FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..+++.|+.+|..+|++++|+.+++++++. | -.|+. .+++.|+..|..+|++++|+.+++++++
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 357899999999999999999999998753 2 23444 3899999999999999999999999986
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0023 Score=66.09 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=74.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHC---CCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCC-Chhc
Q 037510 695 IAGICKSGNVTDARRIFSALLLT---GFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLK-----IN-LVP-NIAT 760 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p-~~~~ 760 (806)
+..+..+|++++|+.++++.++. -+.|+.. +++.|+.+|...|+|++|+.+++++++ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55677889999999999999864 2345442 899999999999999999999999886 22 122 2357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
++.|+..|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999999999999999999865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0034 Score=48.48 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 686 PNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
.|+..+..+..++...++ .++|..+|++.++ ..|+.+ ++..++..+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467778888888765544 6889999999988 778775 7778888889999999999999998884
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.06 E-value=3.7e-07 Score=90.48 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
.|+++..|.+++.+.+++.+|++-|- +. .|+..|..++....+.|.+++-+..+....+.. .++..=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 46777788888888888888886653 22 367778888888888898888888887665543 34444467888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037510 201 AYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWT 253 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (806)
+|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 8888888766544433 356555667777788888888877777543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.003 Score=53.12 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDNFTYSTLIHGYAAVG---DINEAFNLRDEMLKINLVP--NIATYNSLVSGLCNSGELDRAKRLF 781 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 781 (806)
+.+.|.+..+.|. ++..+...+++++++.+ ++++++.++++..+.. .| +...+..|..++.+.|++++|++++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444332 34444445555555555 4445555555555532 13 2334444555555555555555555
Q ss_pred HHHHHCCCCCCH
Q 037510 782 CKLRQKGLTPTV 793 (806)
Q Consensus 782 ~~m~~~g~~p~~ 793 (806)
+.+.+ +.|+.
T Consensus 95 ~~lL~--ieP~n 104 (152)
T 1pc2_A 95 RGLLQ--TEPQN 104 (152)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHh--cCCCC
Confidence 55555 45544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0051 Score=63.51 Aligned_cols=96 Identities=9% Similarity=-0.042 Sum_probs=74.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
+..+..+|++++|..++++.++.. +.|++. ....+++.|+.+|...|+++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~---------------------------~~~~~~~~L~~~y~~~g~~~ 346 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINI---------------------------YQLKVLDCAMDACINLGLLE 346 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH---------------------------HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccch---------------------------HHHHHHHHHHHHHHhhccHH
Confidence 444667889999999999988642 222111 12347899999999999999
Q ss_pred hHHHHHHHHHHC-----C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 706 DARRIFSALLLT-----G-FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 706 ~A~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|+.+++++++. | ..|+. .+++.|+..|..+|++++|+.+++++++
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988753 2 23443 3899999999999999999999999986
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00063 Score=53.75 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=62.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH-H-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHh
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN-F-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVSGLCN 770 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 770 (806)
.+..+...|++++|+..|+++++ ..|+. . .|..++.+|...|++++|++.|+++++. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 56678899999999999999998 56765 5 8889999999999999999999999984 4533 33311
Q ss_pred cCCHHHHHHHHHHHHH
Q 037510 771 SGELDRAKRLFCKLRQ 786 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~ 786 (806)
+.+.+|...+++...
T Consensus 75 -~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMY 89 (99)
T ss_dssp -HHHHHHHHHHCCTTH
T ss_pred -HHHHHHHHHHHHHhc
Confidence 556677777666543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0042 Score=47.94 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=60.6
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 721 PDNFTYSTLIHGYAAVGD---INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 721 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+|...+..++.++...++ .++|..+++++++ +.| ++.....++..+.+.|++++|..+++++.+ ..|+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDPNLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCTTCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccH
Confidence 345577888888865554 7999999999999 567 677888899999999999999999999998 45653333
Q ss_pred HHHHHh
Q 037510 797 NILIDG 802 (806)
Q Consensus 797 ~~li~~ 802 (806)
..+...
T Consensus 80 ~~i~~~ 85 (93)
T 3bee_A 80 VTIIES 85 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0012 Score=52.08 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HHHHHHHHHHhcCChhh
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VYNIVIAGICKSGNVTD 706 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 706 (806)
.+..+.+.|++++|...++++++..+ .+.. .+..++.+|...|++++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--------------------------------~~~~~~~~~lg~~~~~~~~~~~ 53 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--------------------------------VGKDEAYYLMGNAYRKLGDWQK 53 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--------------------------------STHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------------CcHHHHHHHHHHHHHHcCCHHH
Confidence 45667889999999999999987653 2567 88999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++.|++.++ ..|+.. ++.. +.+.+++..|++...
T Consensus 54 A~~~~~~al~--~~p~~~~~~~~--------~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 54 ALNNYQSAIE--LNPDSPALQAR--------KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHH--HCTTSTHHHHH--------HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHh--cCCCcHHHHHH--------HHHHHHHHHHHHHhc
Confidence 9999999999 678764 3311 456677777766554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.75 E-value=2.4e-06 Score=84.85 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (806)
++.||.-+-.+|...+.+.-|...--.++-. ......++..|-..|.+++-+.+++..+... ....-+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5566777777777776666554433333222 1112234555666677777666666665321 234455565555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNL 533 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (806)
.|++- ++++..+.++..-.+ .+ .--++++|.+..-|.++.-++..
T Consensus 272 LYsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 55553 344444444332221 01 11245666666666666555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.017 Score=54.24 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhc-C
Q 037510 704 VTDARRIFSALLLTGFSPDN---FTYSTLIHGYAAV-----GDINEAFNLRDEMLKINLVP--NIATYNSLVSGLCNS-G 772 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 772 (806)
..+|...+++.++ +.|+. .+|..|+..|.+. |+.++|.+.|+++++ +.| +..++..+...|++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5678888999999 78983 4899999999995 999999999999999 566 477888888888884 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHhhHHH
Q 037510 773 ELDRAKRLFCKLRQKGLT--PTVVTYNI 798 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~--p~~~~~~~ 798 (806)
+.++|.+++++....... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999999986555 65554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.15 Score=58.39 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=26.0
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 614 (806)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4455555555553221 245566666666666666666666666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.022 Score=45.12 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTG-----FSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+..-+..|+..+...|++..|...|+++.+.- ..+ ....+..|+.+|.+.|++++|+.+++++++ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34455677888888888888888888877641 112 234778888888888888888888888887 55643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.12 Score=59.13 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 372 NTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNK 451 (806)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (806)
..++..+.+.|..++|+++.++-. .-.......|+++.|.++.+. ..+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 555556666666666665542111 112334456677777666432 13456667777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037510 452 GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
|+++.|.+.|..+.. |..+...+...|+.+...++.+.....| + ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~---~---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG---K---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---c---hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777665532 2334444444555555555544444433 1 222333445555665555554
Q ss_pred H
Q 037510 532 N 532 (806)
Q Consensus 532 ~ 532 (806)
.
T Consensus 760 ~ 760 (814)
T 3mkq_A 760 I 760 (814)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.074 Score=44.69 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHhcC---ChhhHHHHHHHHHHCCCCC-C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 686 PNYVVYNIVIAGICKSG---NVTDARRIFSALLLTGFSP-D-NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
++..+...+..++++.+ +.++++.+|++..+.+ .| + ...+..|+-+|.+.|++++|.++++.+++ +.|+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 57778888999999988 5679999999999953 36 2 34677889999999999999999999999 67854
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.046 Score=43.18 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKIN------LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+..|+..+.+.|++..|+..|+.+++.- -.+...++..|+.++.+.|++++|..+++++.+ +.|+....
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHH
Confidence 4578999999999999999999998731 123567889999999999999999999999988 77875443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.058 Score=50.74 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh-----cCChhhHHHHHH
Q 037510 638 IDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK-----SGNVTDARRIFS 712 (806)
Q Consensus 638 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~ 712 (806)
...|...++++++.++.- .+...|..++..|.+ -|+.++|.+.|+
T Consensus 179 l~~A~a~lerAleLDP~~------------------------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY------------------------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH------------------------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc------------------------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 567888888888765321 145688899999988 499999999999
Q ss_pred HHHHCCCCCC--HHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC--CChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 713 ALLLTGFSPD--NFTYSTLIHGYAAV-GDINEAFNLRDEMLKINLV--PNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 713 ~~~~~g~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+.++ +.|+ ..++...+..++.. |+.++|.+++++++..... |+.. +. ..++-++|..+++++.
T Consensus 229 rAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~----la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 229 HLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK----LL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH----HH----HHHHHHHHHHHHHTHH
T ss_pred HHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh----HH----HHHHHHHHHHHHHHhH
Confidence 9999 8895 46888899999885 9999999999999995444 3332 22 3344466776666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.046 Score=44.07 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINE---AFNLRDEMLKINLVP--NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
..+.+.|.+....|. |+..+--.+++++.+..+... ++.+++...+.+ .| .......|.-++.+.|++++|++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444332 455555556666666654443 666666665532 12 22344455566666666666666
Q ss_pred HHHHHHHCCCCCCH
Q 037510 780 LFCKLRQKGLTPTV 793 (806)
Q Consensus 780 ~~~~m~~~g~~p~~ 793 (806)
+++.+.+ +.|+.
T Consensus 96 ~~~~lL~--~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHH--hCCCC
Confidence 6666666 56653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.32 Score=42.02 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.....|+++.|.++.+++- +...|..|+.....+|+++-|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~-------------------------------------~~~~Wk~Lg~~AL~~gn~~lAe~c 56 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN-------------------------------------DSITWERLIQEALAQGNASLAEMI 56 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC-------------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC-------------------------------------CHHHHHHHHHHHHHcCChHHHHHH
Confidence 3457899999999988761 566899999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 711 FSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 711 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
|++... +..|.-.|...|+.+.-.++-+.....| -++.-..++.-.|+++++.+++.
T Consensus 57 y~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 57 YQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 998765 4456666666777766665555555433 22333334444555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.75 Score=39.68 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 560 SVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+. ..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHHHHHHhCCHH
Confidence 3445677777777776654 25667777777777777777777777665421 23444455566666
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.-.++.+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g-------------------------------------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE-------------------------------------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc-------------------------------------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555555444433 2344555666777777777777543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.35 Score=38.91 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037510 194 TCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGI 258 (806)
Q Consensus 194 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (806)
.+...+..+..+|+-+.-.+++..+... -+|++...-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444455555555555555554322 234445555555555555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=1.3 Score=35.75 Aligned_cols=140 Identities=16% Similarity=0.071 Sum_probs=80.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
+.-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. -|. ..+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 33456677777777776653 24455565555555555555555555554432 111 123444444
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
...+-.+-. +...+...+..+...|+-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 81 i~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444433311 334455566667777777777777777544 2355677777777777777777777777777766
Q ss_pred CCC
Q 037510 362 WNL 364 (806)
Q Consensus 362 ~~~ 364 (806)
.|+
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 663
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.73 Score=37.80 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+..+-..+.+++.+..+ ..+++.+++++.+. .|+. .....|.-+|.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 23445555554442 2321 1333444445555555555555555554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.41 Score=38.73 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=31.7
Q ss_pred CHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 722 DNFTYSTLIHGYAAVGD---INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 722 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
+..|--.+++++.+..+ ..+++.++++..+.+-.-....+..|.-++.+.|++++|+++.+.+.+ +.|+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 33333344444444432 234555555555432111223344444555555555555555555555 45543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.95 E-value=10 Score=42.60 Aligned_cols=224 Identities=11% Similarity=-0.005 Sum_probs=109.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCcHHHHHHHHHH
Q 037510 412 GLCRVGDVDEALHLWLMMLKRC--VCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGF-------YKNTITFNTMIKG 482 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 482 (806)
+....|+.++++.++...+..+ ..+....-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777777776655421 111222333444455566665667777766664321 0111122233333
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHH
Q 037510 483 LCKMGK-MTEAQKIFDKMKELGCLPNIIT----YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNY 557 (806)
Q Consensus 483 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (806)
+.-.|. -+++.+.+..+.... +..+ -..+...+...|+.+....++..+ ... ...++.-.-.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---------~e~-~~e~vrR~aa 529 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---------QET-QHGNITRGLA 529 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---------HHC-SCHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---------hcc-CcHHHHHHHH
Confidence 333343 245566666655432 2211 122333445667766666666655 211 1112222233
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY--GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRL 635 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 635 (806)
+.-++.-.|+.+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 444455677888777777777653 12222211 133445667777666666777777531 22232222333334445
Q ss_pred CCHHHHHHHHHHHhh
Q 037510 636 GKIDEANIFLQKMVD 650 (806)
Q Consensus 636 g~~~~A~~~~~~~~~ 650 (806)
|+.+.+..+++.+.+
T Consensus 608 g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 608 RDYTTVPRIVQLLSK 622 (963)
T ss_dssp SSCSSHHHHTTTGGG
T ss_pred CCHHHHHHHHHHHHh
Confidence 665555555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.53 E-value=2.6 Score=43.47 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=89.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhc-CCCcChhh--HHHHHHHHHHcCChHHHHHHHHHHHHC--CCC--
Q 037510 117 EFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKY-GCIPSLRS--CNCLLSNLVKNGEGYVALLVYEQMMRV--GIV-- 189 (806)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~-- 189 (806)
+...+..+...++..|...|+++...+.+..+.+. |..+...+ -+.++..+......+.... ...... .+.
T Consensus 51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~--~~~i~~l~~vte~ 128 (445)
T 4b4t_P 51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTR--ISVIETIRVVTEN 128 (445)
T ss_dssp STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHH--HHHHHCCSSSSSC
T ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHH--HHHHHHHHHHhcc
Confidence 34455677778888888888888887777665543 22111111 1122222222332222111 111110 011
Q ss_pred ---C---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Q 037510 190 ---P---DVFTCSIVVNAYCKEKSMEKALDFVKEMENL--GFELN---VVTYNSLIDGYVSLGDLNGAKRVLEWTCEK-- 256 (806)
Q Consensus 190 ---~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 256 (806)
. .......+...+...|++.+|..++.++... |.... ...+..-++.|...+|+..|..++.++...
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 1 1112244566677777777777777776421 21111 345566667777777777777777765421
Q ss_pred --CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 257 --GISRT--AVTYTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 257 --~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
...|+ ...+...+..+...+++.+|-+.|.+..+
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11111 12345556666667777777666666544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.98 Score=37.40 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=64.0
Q ss_pred cChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHh----HHHHHHH---HHHhcCChhHHHHHHHHHHHc
Q 037510 155 PSLRSCNCLLSNLVKNGEG------YVALLVYEQMMRVGIVPDVF----TCSIVVN---AYCKEKSMEKALDFVKEMENL 221 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~~~~~----~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 221 (806)
.|..+|-..+..+-+.|++ ++..++|++.... ++|+.. .|-.+.- .+...++.++|+++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3666777777777777777 7777777777663 455421 1111110 112336777888888777655
Q ss_pred CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037510 222 GFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR 260 (806)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (806)
+ +--..+|......-.+.|+++.|.+++......++.|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 2226666666666677788888888887777766543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.37 Score=38.82 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 604 NKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDE---ANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 604 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
..+.+.|.+....| .++..+-..+..++.+.....+ ++.+++++.+.+ .|+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~------------------------ 71 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKE------------------------ 71 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHH------------------------
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Ccc------------------------
Confidence 34444455444444 3556666666666666655444 666666665542 010
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
-.....-.|.-++.+.|++++|...++.+++ +.|+.
T Consensus 72 -----~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 72 -----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred -----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence 0122333455566677777777777777776 56654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.07 E-value=14 Score=41.51 Aligned_cols=271 Identities=11% Similarity=0.030 Sum_probs=146.4
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCcchHHHHHH
Q 037510 341 NGYCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGI-------EPSVVTYNTLLK 411 (806)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~ 411 (806)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++.+++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566788888888887655421 012222333344455666666678887777665321 011111122222
Q ss_pred HH--HhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHH--HHHHh
Q 037510 412 GL--CRVGDVDEALHLWLMMLKRCVCPNE--VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMI--KGLCK 485 (806)
Q Consensus 412 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~ 485 (806)
++ ...++ +++.+.+..++.... +.. ..-..+...+.-.|+.+....++..+.+.. +..+...+. -++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 33 33344 355566665555321 111 122234444556778777777777776642 223333333 34457
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HH---HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHH
Q 037510 486 MGKMTEAQKIFDKMKELGCLPNIIT-YR---TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISV 561 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 561 (806)
.|+.+.+..+++.+... .+... |. .+.-+|+..|+.....+++..+. . ....++.-...+.-+
T Consensus 537 ~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~---------~-d~~d~VRraAViaLG 603 (963)
T 4ady_A 537 YGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV---------S-DSNDDVRRAAVIALG 603 (963)
T ss_dssp TTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---------H-CSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---------c-CCcHHHHHHHHHHHH
Confidence 78989888888888764 23322 22 34456778889877777887762 1 222333333334445
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 562 AFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGML-NKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
+...|+.+.+..+++.+.+.+ .|....-..+.-+....|+. .+++..+..+.. .+|..+-..-+.++.
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 555677777777776665543 44444334444444445543 678888888874 345554444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.94 E-value=3.4 Score=42.59 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHhHHHHHHHHH---
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM-GLYPNIVTYGALISGW--- 597 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~--- 597 (806)
|+++.|.+.+-.+++... ..............++..+...|+++...+.+.-+.+. |..+.. ...++..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r----~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR----QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS----SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh----hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHH
Confidence 566777766655533211 23344556677888999999999999988877766653 322222 23333322
Q ss_pred -HccCChHHHHHHHHHHHH------cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh
Q 037510 598 -CDAGMLNKAFKAYFDMIE------KG-FSP---NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN 666 (806)
Q Consensus 598 -~~~g~~~~A~~~~~~~~~------~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 666 (806)
......+.... ...++ .| +.. .......|...+...|++.+|..++.++...-...+.
T Consensus 104 l~~~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--------- 172 (445)
T 4b4t_P 104 LKSSKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME--------- 172 (445)
T ss_dssp HHHHCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---------
T ss_pred HhcCCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---------
Confidence 22333222111 12221 11 111 2334467788899999999999999998742111100
Q ss_pred hhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCH--HhHHHHHHHHHhcCCHH
Q 037510 667 VDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPDN--FTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~ 740 (806)
... -...+...+..|...+++.+|..++.++... ...|+. ..+...+..+...++|.
T Consensus 173 -~~~----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 173 -MSE----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp -HHH----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred -HHH----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 000 1235666778889999999999999887532 222332 25677888888899999
Q ss_pred HHHHHHHHHHH
Q 037510 741 EAFNLRDEMLK 751 (806)
Q Consensus 741 ~A~~~~~~~~~ 751 (806)
+|.+.|.++.+
T Consensus 236 ~a~~~y~e~~~ 246 (445)
T 4b4t_P 236 EVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988875
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.90 E-value=1.1 Score=37.01 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHHhcCCh------hhHHHHHHHHHHCCCCCCHH-hHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 037510 685 VPNYVVYNIVIAGICKSGNV------TDARRIFSALLLTGFSPDNF-TYSTLIH------GYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 751 (806)
+.|..+|-..+...-+.|+. ++-.++|+++... ++|+.. .|...+. .+...+|.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34778898888888888998 8888999998884 667542 2221111 12344899999999999988
Q ss_pred cCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 752 INLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 752 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
.+-+- ...+.....-=.++|++..|.+++.+.+..|-.|.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 52222 44444444445589999999999999999777664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.54 E-value=1.1 Score=36.15 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=57.6
Q ss_pred CCCChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 684 CVPNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
..|++.+--.+.+++.+..+ ..+++.+++++.+.+ |+. ..+-.|+-++.+.|++++|.++.+.+++ +.|+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45677777778888888876 457999999999844 643 4667889999999999999999999998 67854
Q ss_pred h
Q 037510 759 A 759 (806)
Q Consensus 759 ~ 759 (806)
.
T Consensus 112 ~ 112 (134)
T 3o48_A 112 K 112 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.44 E-value=2.1 Score=35.10 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=60.6
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 720 SPDNFTYSTLIHGYAAVGD---INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
.|+..+--.+++++.++.+ ..+++.+++...+.+-.-.......|.-++.+.|++++|+++.+.+.+ +.|+..--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 5677777788888888774 567999999999854222445667788899999999999999999999 89986544
Q ss_pred HHH
Q 037510 797 NIL 799 (806)
Q Consensus 797 ~~l 799 (806)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=2.3 Score=42.91 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATYN 762 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 762 (806)
+...++..+...|++++|+..++.+.. ..| +...|..++.+|.+.|+..+|++.|++..+ .|+.|.+.+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566777788888888888888777 456 445788888888888888888888887654 47777766543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.84 E-value=2.4 Score=46.46 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
..-+...|+++-|+.+.++... ..|+.+ +|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456678999999999999999 889875 9999999999999999999998886
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.31 E-value=13 Score=35.63 Aligned_cols=81 Identities=10% Similarity=-0.041 Sum_probs=44.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKV---GKVDEAIRVLNEMLKTGLEMNLLIC 336 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 336 (806)
-++..+..+...|.+.|++.+|...|-.- ...|...+..++.-+... |...++ +...-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG-----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFS 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHH
Confidence 36677788888888888888888766421 111344555555444443 333221 11112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 337 NSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
.+++ .|.-.|+...|..+|+...
T Consensus 193 RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 2222 3445677777777776553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.72 E-value=9.9 Score=44.81 Aligned_cols=157 Identities=8% Similarity=-0.036 Sum_probs=103.3
Q ss_pred CChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhh-cCCCc--hhhHHHHHHHhhccCCCH
Q 037510 46 LNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCK-NNYAG--FLIWDELVRAYKEFAFSP 122 (806)
Q Consensus 46 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~ 122 (806)
..++.+..|..|.. .++.+...+++++...|++++|...|.+...... ..... ..-+..+.........-+
T Consensus 826 ~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 45677788878854 2455567889999999999999999986532211 11100 111222222222333345
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSL----RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIV 198 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 198 (806)
..|..++..|-+.|.++.+++.-...++.....+. ..|..+...+...|++++|...+-.+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 67888889999999999999888877654322121 2578888899999999999998888866433 34556667
Q ss_pred HHHHHhcCChhH
Q 037510 199 VNAYCKEKSMEK 210 (806)
Q Consensus 199 ~~~~~~~g~~~~ 210 (806)
+..+|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777666543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.96 Score=38.31 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--C-
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLT-GFSPDN-------FTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLV--P- 756 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--p- 756 (806)
++-.-+..+...|.++.|+-+.+.+... +-.|+. .++..+++++...|++.+|...|+++++. .+. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444567788899999999888876653 123432 26778999999999999999999998651 110 0
Q ss_pred -------------------ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 757 -------------------NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 757 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
+...-.-+..||.+.|++++|+.+++.++.+.-.|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 11334557789999999999999999876544444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.19 E-value=22 Score=34.32 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
-|+.....++..|.+.+++.+|...|- . |-.+....+..++.-+...+...++--++-+ .+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR---------------aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR---------------AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH---------------HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH---------------HH
Confidence 477788889999999999999988872 1 2333335665555555544432222222222 12
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~ 785 (806)
--|.-.|+...|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 23556678888888766654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.46 E-value=4.6 Score=44.32 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHH
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG---------DINEAFNLRDEMLK 751 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~ 751 (806)
+.+..=|..|+....+.+++++|.+.|+..+. ..-+..++..|+..|.+.+ +.+..+.+.-++..
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~ 683 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS 683 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence 34566689999988999999999999999988 5677788899999998877 77777777777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.32 E-value=17 Score=42.95 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHH
Q 037510 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTA----VTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGV 303 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 303 (806)
.-|.-++..+.+.|.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+... .. -..+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~--r~~cLr~ 976 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--CHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--HHHHHHH
Confidence 45677888888888888888887776664322222 25777888888889999998888887765 22 3456777
Q ss_pred HHHHHHhcCChHHHHH
Q 037510 304 LIDGYCKVGKVDEAIR 319 (806)
Q Consensus 304 li~~~~~~g~~~~a~~ 319 (806)
++..+|..|..+.-..
T Consensus 977 LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHCCHHHHHH
T ss_pred HHHHHHhCCChhhhhC
Confidence 8888888777665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=2 Score=43.47 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ-----KGLTPTVVTY 796 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 796 (806)
...++.++...|++++|+..+..++. ..| +...+..|+.+|.+.|+..+|++.|+++.+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44678888999999999999999988 456 777999999999999999999999998643 4999997763
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.36 E-value=35 Score=34.04 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=81.9
Q ss_pred hHHHHHHHHhcCCCh-------hHHHHHHHhhhhCCC-C-CCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCc
Q 037510 34 DDLLDSVLQKLRLNP-------DASLGFFQLASKQQK-F-RPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAG 104 (806)
Q Consensus 34 ~~~~~~vl~~~~~~~-------~~al~~f~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (806)
..+|..++..+..-| +..+..+.|+..... | ++ ..=..++..+...|++.+|..++..+.+.++.....
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~--~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~ 135 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ--SLEARLIALYFDTALYTEALALGAQLLRELKKLDDK 135 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 334555555443322 446788899984422 2 22 122368899999999999999999888765432111
Q ss_pred hhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcC----CCcChhhHHH--HHHHHH-HcCChHHHH
Q 037510 105 FLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYG----CIPSLRSCNC--LLSNLV-KNGEGYVAL 177 (806)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~--ll~~~~-~~~~~~~A~ 177 (806)
..--+++..-++.|...|++..+...+....... +.|...+.-- -...+. ..+++..|.
T Consensus 136 --------------~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~ 201 (394)
T 3txn_A 136 --------------NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAF 201 (394)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --------------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHH
Confidence 1113566777888899999999998888765431 2222222111 123345 678888888
Q ss_pred HHHHHH
Q 037510 178 LVYEQM 183 (806)
Q Consensus 178 ~~~~~m 183 (806)
..|-+.
T Consensus 202 ~~F~ea 207 (394)
T 3txn_A 202 SYFYEA 207 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.85 E-value=6.6 Score=40.23 Aligned_cols=98 Identities=8% Similarity=-0.066 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhcH----H
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKI-NLVPNIATY----N 762 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~----~ 762 (806)
++..++..|.+.|++++|.+.|.++......+.. ..+-..+..+...++|..+...++++... .-.+|.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677899999999999999999999986444443 37778899999999999999999998752 112232221 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 763 SLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 763 ~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
.-+..+...+++.+|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2233455789999999998887643
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.25 E-value=29 Score=32.21 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.+.+.|.+++|++..+.-++..+. |...=..++..+|-.|++++|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~--------------------------------da~~R~~LfqLLcv~G~w~RA~~Q 53 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK--------------------------------DASLRSSFIELLCIDGDFERADEQ 53 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT--------------------------------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc--------------------------------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 456788999999999888887643 666667789999999999999999
Q ss_pred HHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhcHHHHHHHHH--hcCCHHHHHH
Q 037510 711 FSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-----NIATYNSLVSGLC--NSGELDRAKR 779 (806)
Q Consensus 711 ~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~ 779 (806)
++.+.+ +.|+.. .|..+|. |...-.+...-+-.| .......|+.++. ..|+.++|..
T Consensus 54 L~~~a~--l~p~~~~~a~~yr~lI~----------aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~ 121 (273)
T 1zbp_A 54 LMQSIK--LFPEYLPGASQLRHLVK----------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 121 (273)
T ss_dssp HHHHHH--HCGGGHHHHHHHHHHHH----------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHH--hCchhhHHHHHHHHHHH----------HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 999999 778764 3444443 233333333322233 2234455555544 5699999999
Q ss_pred HHHHHHH
Q 037510 780 LFCKLRQ 786 (806)
Q Consensus 780 ~~~~m~~ 786 (806)
+-..+.+
T Consensus 122 lr~~A~e 128 (273)
T 1zbp_A 122 LALQIEE 128 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888865
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.37 E-value=44 Score=32.32 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 037510 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF----DKMKELGCLPNIITYRTLSD 516 (806)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 516 (806)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++. +-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555667777777777654322 2344556655544443 44445566777776666666
Q ss_pred HHHhcCChH-HHHHHHHHHHhcccChhhhhcC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 037510 517 GYCKVGNLE-EAFKIKNLMERREILPSMEKEA--IVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGAL 593 (806)
Q Consensus 517 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 593 (806)
.+.....-+ .=.++.+.+.... .+.+ ..-++..-..+...|.+.+++.+|..-|- .|-.+.+..+..+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS-----~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~m 173 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWS-----KKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARM 173 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHH-----HHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHH-----hhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHH
Confidence 665544321 1122333332211 1222 23466777788889999999888887762 2334444566655
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
+..+...+...+ ++......++ .|.-.++...|..+++...+
T Consensus 174 L~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 174 EYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 555444332211 1222333333 35567888888887766553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.27 E-value=14 Score=31.23 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcC-CCcCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYG-CIPSL-------RSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
+-.-++.+...|.++.|+-+.+.+.... ..|++ .++..+.+++..++++..|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4444555666777777777666654331 11221 1445556666667777777776666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 806 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 48/385 (12%), Positives = 105/385 (27%), Gaps = 28/385 (7%)
Query: 272 YCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM 331
+ E AE ++ ++ +L + + ++D + +K
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTG--VLLLLSSIHFQCRRLDRSAHFSTLAIK----- 61
Query: 332 NLLICNSLINGYCKLGQV---CEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAF 388
L Y LG V + LR + ++ +
Sbjct: 62 ---QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 389 RLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLL-DI 447
+ + G + PN + L +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 448 LFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507
+G+ + A+ + + + + L + A + + L +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236
Query: 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRE 567
+ + L+ Y + G ++ A I E+ P D Y L + +
Sbjct: 237 AVVHGNLACVYYEQGLIDLA--IDTYRRAIELQPH--------FPDAYCNLANALKEKGS 286
Query: 568 LTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627
+ D + L + + G + +A + Y +E F A S
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSN 344
Query: 628 LVSTLCRLGKIDEANIFLQKMVDFD 652
L S L + GK+ EA + ++ +
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRIS 369
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 56/393 (14%), Positives = 117/393 (29%), Gaps = 28/393 (7%)
Query: 378 YCRECDMTEAFRLCAEMLRQGIEP-SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCP 436
+ D A R C ++ R EP + L + +D + H + +K P
Sbjct: 9 EYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNP 64
Query: 437 NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496
+ N G+ Y + + + + + + + A +
Sbjct: 65 LLA------EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN 556
++ + + + + A+ S
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 557 YLISVAFKSRELTSLVDLLAEMQTMGLYPNIV-TYGALISGWCDAGMLNKAFKAYFDMIE 615
+ + + L PN + Y L + +A + ++A AY +
Sbjct: 179 FNAQGEIWLAIH-------HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 616 KGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV--DFDFVPDLKYMASSAINVDAQKIA 673
+ V L G ID A ++ + F +A++ + A
Sbjct: 232 LSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 674 MSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHG 732
+A LC + N + + GN+ +A R++ L P+ +S L
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASV 348
Query: 733 YAAVGDINEAFNLRDEMLKINLVPNIA-TYNSL 764
G + EA E ++I+ P A Y+++
Sbjct: 349 LQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 379
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 806 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.27 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.96 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.79 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.48 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.53 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.53 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.99 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.25 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.85 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.47 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.3e-21 Score=199.86 Aligned_cols=380 Identities=17% Similarity=0.135 Sum_probs=217.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHH
Q 037510 306 DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMT 385 (806)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (806)
..+.+.|++++|.+.++++.+..+ -++..+..+...|.+.|++++|+..|++..+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 334455555555555555554422 134444455555555555555555555544432 223344444444444455555
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 037510 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNIL 465 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (806)
+|++.+....+... .+..............+....+........
T Consensus 85 ~A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 85 EAIEHYRHALRLKP------------------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHCT------------------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred cccccccccccccc------------------------------------cccccccccccccccccccccccccccccc
Confidence 55544444444321 122222222222333333333333333322
Q ss_pred HCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhh
Q 037510 466 ARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEK 545 (806)
Q Consensus 466 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (806)
... .................+....+...+....... +.+...+..+...+...|++++|...++... .
T Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------~ 197 (388)
T d1w3ba_ 129 QYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---------T 197 (388)
T ss_dssp HHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------H
T ss_pred ccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHH---------H
Confidence 221 1222333333444445555555555555555443 3345555556666666666666666665541 1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 037510 546 EAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC 625 (806)
Q Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 625 (806)
. .+.+...+..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|+..|+++++.. +.+..++
T Consensus 198 ~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T d1w3ba_ 198 L-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp H-CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred h-CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 1 12234555666666666666666666666666543 3345566667777777777888888777777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
..++.++...|++++|...++......+ .+...+..++..+...|+++
T Consensus 275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 275 CNLANALKEKGSVAEAEDCYNTALRLCP--------------------------------THADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhccCC--------------------------------ccchhhhHHHHHHHHCCCHH
Confidence 7777777788888888888777765432 35566777777788888888
Q ss_pred hHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCC
Q 037510 706 DARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
+|+..|++.++ +.|+.. +|..++.+|.+.|++++|++.|+++++ +.| ++..|..|+.+|.+.||
T Consensus 323 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 88888888777 567653 677788888888888888888888777 556 45677777777777765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.1e-21 Score=196.84 Aligned_cols=383 Identities=15% Similarity=0.076 Sum_probs=265.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 037510 268 LTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLG 347 (806)
Q Consensus 268 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 347 (806)
+...+.+.|++++|++.++++.+. .+-+...+..+...+.+.|++++|...++++++..+. +..++..+...|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 567788999999999999999886 3446778899999999999999999999999987543 6788999999999999
Q ss_pred CHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 037510 348 QVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWL 427 (806)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 427 (806)
++++|+..+....+.. +.+...+..........+....+............ ................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHH
Confidence 9999999999988764 34444455555555555555555555555544322 233334444445555566666666555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 428 MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
...... +.+...+..+...+...| ++++|...+++..+.. +.+
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~-----------------------------------~~~~A~~~~~~al~~~-p~~ 202 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQG-----------------------------------EIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTT-----------------------------------CHHHHHHHHHHHHHHC-TTC
T ss_pred HhhccC-cchhHHHHhhcccccccC-----------------------------------cHHHHHHHHHHHHHhC-ccc
Confidence 555432 123334444444444444 4444444444444432 223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNI 587 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 587 (806)
...+..+...+...|++++|...++... .. ...+...+..+...+.+.|++++|...+++..+.. +-+.
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 271 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRAL---------SL-SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP 271 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHH---------HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhH---------HH-hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 4445555555555555555555555441 11 12233444555556666666666666666666542 2345
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
.++..+...+...|++++|.+.++...... +.+...+..+..++...|++++|...++++++..+
T Consensus 272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------------- 336 (388)
T d1w3ba_ 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------- 336 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------
Confidence 677788888888899999999988888763 56778888888899999999999999999887642
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD 738 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 738 (806)
.+..++..++.+|.+.|++++|+..|+++++ +.|+.. +|..|+.+|.+.||
T Consensus 337 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 337 ------------------EFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 2567888899999999999999999999998 788764 88999999888776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.8e-13 Score=132.83 Aligned_cols=271 Identities=13% Similarity=0.076 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKV 521 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (806)
-.....+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|...+.+..+.. +.+...+..++..+...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345667778888888888888888764 4456778888888888888888888888887765 44567777788888888
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG 601 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 601 (806)
|++++|.+.++... . ..|+......... ... ...+.......+..+...+
T Consensus 101 ~~~~~A~~~~~~~~---------~--~~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~~~ 150 (323)
T d1fcha_ 101 SLQRQACEILRDWL---------R--YTPAYAHLVTPAE----------------EGA---GGAGLGPSKRILGSLLSDS 150 (323)
T ss_dssp TCHHHHHHHHHHHH---------H--TSTTTGGGCC----------------------------------CTTHHHHHHH
T ss_pred ccccccccchhhHH---------H--hccchHHHHHhhh----------------hhh---hhcccccchhhHHHHHHhh
Confidence 88888888877652 1 1121110000000 000 0000001111122234456
Q ss_pred ChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 602 MLNKAFKAYFDMIEKGF-SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 602 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
.+.+|.+.+.++++... ..+..++..+...+...|++++|...+++++...+.
T Consensus 151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------------------------- 204 (323)
T d1fcha_ 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-------------------------- 204 (323)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc--------------------------
Confidence 67888888888886432 345778888899999999999999999998876432
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-- 757 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 757 (806)
+..+|..++.+|...|++++|++.|+++++ +.|+.. +|..++.+|.+.|++++|++.|+++++. .|+
T Consensus 205 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~ 274 (323)
T d1fcha_ 205 ------DYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSR 274 (323)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC-
T ss_pred ------cccchhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCh
Confidence 677899999999999999999999999999 678764 8999999999999999999999999872 221
Q ss_pred ----------hhcHHHHHHHHHhcCCHHHHHHH
Q 037510 758 ----------IATYNSLVSGLCNSGELDRAKRL 780 (806)
Q Consensus 758 ----------~~~~~~l~~~~~~~g~~~~A~~~ 780 (806)
...+..+..++...|+.+.+...
T Consensus 275 ~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 275 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12345666677777777655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-12 Score=129.36 Aligned_cols=244 Identities=13% Similarity=0.029 Sum_probs=138.3
Q ss_pred HHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 037510 128 ILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKS 207 (806)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 207 (806)
....+.+.|++++|+..|+.+++..+. +..+|..+..++...|++++|+..|++..+..+ -+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 444556666666666666666665432 455666666666666666666666666655321 134555555566666666
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
+++|.+.++++.... |+.............. .+.......+..+...+.+.+|.+.|.+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666666655432 2111000000000000 0000011112223344556667777766
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 288 MKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 288 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
..+..+...+...+..+...+...|++++|...+++.....+. +...|..+...|...|++++|+..|++..+.. +-+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 6654344445566666777777777777777777777665432 56667777777777777777777777766543 334
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
..+|..+..+|.+.|++++|++.|++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55677777777777777777777777665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.1e-09 Score=106.91 Aligned_cols=305 Identities=12% Similarity=0.028 Sum_probs=205.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 037510 443 TLLDILFNKGDFYGAVKLWNNILARGFYKN----TITFNTMIKGLCKMGKMTEAQKIFDKMKELGC-LPN----IITYRT 513 (806)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 513 (806)
.....+...|++++|+.++++.+......+ ...+..+...+...|++++|...+++..+... .++ ...+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345556677777777777777766531111 23556667778888888888888887754311 112 244566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC--CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC----CCC
Q 037510 514 LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI--VP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL----YPN 586 (806)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~----~p~ 586 (806)
+...+...|++..+...+....... ..... .+ ....+..+...+...|+++.+...+........ ...
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLI-----NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----HhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 6777888899999988887653210 11111 11 234556678889999999999999998876421 222
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEK--GFSPN----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM 660 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 660 (806)
...+......+...|+..++...+.+.... ..... ...+..+...+...|++++|...+++........+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 247 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN---- 247 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC----
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc----
Confidence 345555666778889999999988877652 11111 23455667778889999999999998876543221
Q ss_pred hhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHH-hHHHHHHHHHh
Q 037510 661 ASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----GFSPDNF-TYSTLIHGYAA 735 (806)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~-~~~~l~~~~~~ 735 (806)
......+..++.++...|++++|...+++++.. +..|+.. ++..++.+|..
T Consensus 248 ------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 303 (366)
T d1hz4a_ 248 ------------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303 (366)
T ss_dssp ------------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 123445677889999999999999999988742 4556553 88899999999
Q ss_pred cCCHHHHHHHHHHHHHc----CCCC----ChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKI----NLVP----NIATYNSLVSGLCNSGELDRAKRL 780 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~~ 780 (806)
.|++++|++.++++++. |... ....+..++..+...|+.+++.+-
T Consensus 304 ~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 304 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999999999998763 2111 112344555667777777776553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=5.8e-10 Score=109.10 Aligned_cols=211 Identities=18% Similarity=0.166 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG-MLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
...++.+...+.+.+..++|+++++++.+.. +-+...|+....++...| ++++|++.++++++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4667778888999999999999999999963 334567888888888776 5899999999999874 447889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.+.+.|++++|+..++++++.++. +..+|..++..+.+.|++++|++.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~--------------------------------n~~a~~~~~~~~~~~~~~~~Al~~ 168 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK--------------------------------NYHAWQHRQWVIQEFKLWDNELQY 168 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc--------------------------------chHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999987643 788999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 711 FSALLLTGFSPDN-FTYSTLIHGYAAVGD------INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 711 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
++++++ +.|+. .+|+.++..+.+.+. +++|++.+.++++ +.| +...|..+...+.. ...+++.+.++
T Consensus 169 ~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~ 243 (315)
T d2h6fa1 169 VDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQD-RGLSKYPNLLN 243 (315)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTT-TCGGGCHHHHH
T ss_pred HHHHHH--HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHh-cChHHHHHHHH
Confidence 999999 77865 489888888776665 6789999999998 456 66777777766555 44688889998
Q ss_pred HHHHCCCCCC---HhhHHHHHHhh
Q 037510 783 KLRQKGLTPT---VVTYNILIDGY 803 (806)
Q Consensus 783 ~m~~~g~~p~---~~~~~~li~~~ 803 (806)
...+ +.|+ ...+..+...|
T Consensus 244 ~~~~--l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 244 QLLD--LQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHH--HTTTCCCHHHHHHHHHHH
T ss_pred HHHH--hCCCcCCHHHHHHHHHHH
Confidence 8876 3443 33444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.5e-09 Score=103.40 Aligned_cols=216 Identities=9% Similarity=0.008 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGE-GYVALLVYEQMMRVGIVPDVFTCSIVVNA 201 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 201 (806)
+++..+...+.+.+..++|+++++.+++..+. +..+|+....++...|+ +++|+..+++.++..+ -+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 45667777888999999999999999998754 77899999999888764 8999999999988543 367889999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK---- 277 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 277 (806)
+.+.|++++|+..++++.+.. +.+..+|..+...+.+.|++++|.+.++++.+.++ .+..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchh
Confidence 999999999999999999875 45788999999999999999999999999999765 477788888777766655
Q ss_pred --HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHh
Q 037510 278 --MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM-NLLICNSLINGYCK 345 (806)
Q Consensus 278 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 345 (806)
+++|++.+.+..+. .+.+...|..+...+. ....+++.+.++...+....+ +...+..++..|..
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 57888888888776 3446667776665544 444677888888776643332 34455666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=6.6e-09 Score=104.44 Aligned_cols=279 Identities=11% Similarity=0.006 Sum_probs=199.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCC-CCCH
Q 037510 478 TMIKGLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAI-VPSI 552 (806)
Q Consensus 478 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~ 552 (806)
.....+...|++++|+.++++..+.....+ ...+..+..++...|++++|...++...... ...+. ....
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~ 91 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HhhcchHHHH
Confidence 345667889999999999999988642222 2467778889999999999999999873211 11111 1123
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCCC---HhHHHHHHHHHHccCChHHHHHHHHHHHHcCC----CCC
Q 037510 553 DMYNYLISVAFKSRELTSLVDLLAEMQT----MGLYPN---IVTYGALISGWCDAGMLNKAFKAYFDMIEKGF----SPN 621 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~ 621 (806)
..+..+...+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+........ ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 4556677888999999999998887654 221111 23455667788899999999999999886422 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+......+...|...++...+.+.......... ........+..++..+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-------------------------HSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-------------------------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-------------------------cCchHHHHHHHHHHHHHhc
Confidence 455666677788899999999888876643111000 0001233566777888999
Q ss_pred CChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-ChhcHHHHHHHHHhcCC
Q 037510 702 GNVTDARRIFSALLLTGFSPD---NFTYSTLIHGYAAVGDINEAFNLRDEMLK----INLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
|++++|...+++..+.....+ ...+..++.++...|++++|...+++++. .+..| ....+..+..+|.+.|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 999999999998877422222 23567789999999999999999999875 24444 34577888999999999
Q ss_pred HHHHHHHHHHHHH
Q 037510 774 LDRAKRLFCKLRQ 786 (806)
Q Consensus 774 ~~~A~~~~~~m~~ 786 (806)
+++|.+.+++..+
T Consensus 307 ~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 307 KSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=3.1e-08 Score=96.55 Aligned_cols=189 Identities=6% Similarity=-0.003 Sum_probs=110.8
Q ss_pred CChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 037510 136 GMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFV 215 (806)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 215 (806)
+..++|..+|++..+..++.+...|...+..+.+.|+++.|..+|+++++.........|...+..+.+.|+++.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34566777777776543444555667677777777777777777777766432222345666666666777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037510 216 KEMENLGFELNVVTYNSLIDG-YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDV 294 (806)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 294 (806)
+++.+.+. .+...|...... +...|+.+.|..+|+.+....+ .+...|...+..+.+.|+++.|..+|++..+..+.
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77766542 233333333322 3344666667777766666432 34556666666666666666666666666554333
Q ss_pred CCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037510 295 IVD--EYAYGVLIDGYCKVGKVDEAIRVLNEMLK 326 (806)
Q Consensus 295 ~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (806)
.|+ ...|...+..-...|+.+.+..+++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 22455555544555666666666655544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1e-09 Score=109.08 Aligned_cols=255 Identities=8% Similarity=-0.046 Sum_probs=173.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------HHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHH
Q 037510 487 GKMTEAQKIFDKMKELGCLPNIITYRTLSDG----------YCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN 556 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (806)
+..++|+.++....+.. |.+...|+..... +...|.+++|+..++.. ... .+.+...|.
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~---------l~~-~pk~~~~~~ 111 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC---------LRV-NPKSYGTWH 111 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH---------HHH-CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH---------HHh-CCCcHHHHH
Confidence 34477888888777764 2233444332222 23344567788888776 221 234566677
Q ss_pred HHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 557 YLISVAFKSR--ELTSLVDLLAEMQTMGLYPNIVTYGA-LISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 557 ~l~~~~~~~~--~~~~a~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
.+..++...+ ++++|...++.+.+.. +++...+.. ....+...|.+++|+..++++++.+ +-+...|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 7766666655 4789999999988763 334555443 4456777899999999999988864 447888888999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 634 RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 634 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
..|++++|...++...+.. | ........+...+..+++...+..
T Consensus 190 ~~~~~~~A~~~~~~~~~~~---------------------------------~---~~~~~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENVL---------------------------------L---KELELVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp HHSCCCCSSSCCSSCHHHH---------------------------------H---HHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHhH---------------------------------H---HHHHHHHHHHHhcchhHHHHHHHH
Confidence 9998887765554433321 0 111223345566777888888888
Q ss_pred HHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 714 LLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 714 ~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
... ..|+. .++..++..+...|++++|+..+.+..+ ..| +..++..++.+|...|++++|.+++++..+ +.|
T Consensus 234 ~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP 307 (334)
T d1dcea1 234 WLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDP 307 (334)
T ss_dssp HHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCG
T ss_pred HHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCc
Confidence 887 44544 4677778888888888999988888876 334 556778888889999999999999999888 788
Q ss_pred CHhhH
Q 037510 792 TVVTY 796 (806)
Q Consensus 792 ~~~~~ 796 (806)
+...|
T Consensus 308 ~~~~y 312 (334)
T d1dcea1 308 MRAAY 312 (334)
T ss_dssp GGHHH
T ss_pred ccHHH
Confidence 64433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.3e-09 Score=108.21 Aligned_cols=232 Identities=7% Similarity=-0.062 Sum_probs=151.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcccChhhhhcCCCCCHHHHH-HHHHHH
Q 037510 486 MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGN--LEEAFKIKNLMERREILPSMEKEAIVPSIDMYN-YLISVA 562 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 562 (806)
.|++++|+.+++...+.. +.+...|..+..++...++ +++|...++.+ .... +++...+. .....+
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a---------l~~~-~~~~~~~~~~~~~~~ 154 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARF---------LEAD-ERNFHCWDYRRFVAA 154 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH---------HHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHH---------HhhC-chhhhhhhhHHHHHH
Confidence 344667777777777664 4456666666666665543 67777777765 2221 22344433 344566
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
...+..++|+..++.+.+.. +-+...|..+...+.+.|++++|...+.+..+. .|+. ..+...+...+..+++.
T Consensus 155 ~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~ 228 (334)
T d1dcea1 155 QAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSA 228 (334)
T ss_dssp HTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHH
T ss_pred HhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHH
Confidence 66777888888877777653 235667777777788888877766555444432 1111 12233445567777777
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
..+.......+. +...+..++..+...|+..+|...+.+..+ ..|+
T Consensus 229 ~~~~~~l~~~~~--------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~ 274 (334)
T d1dcea1 229 WFYHRWLLGRAE--------------------------------PLFRCELSVEKSTVLQSELESCKELQELEP--ENKW 274 (334)
T ss_dssp HHHHHHHHSCCC--------------------------------CSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHhCcc--------------------------------hhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCch
Confidence 777777665432 333455567777788889999999998887 6676
Q ss_pred HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHh
Q 037510 723 NF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCN 770 (806)
Q Consensus 723 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 770 (806)
.. +|..++.+|...|++++|++.++++++ +.|+ ...|..|...+.-
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHhH
Confidence 64 888899999999999999999999988 5674 4455666655553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3.2e-08 Score=96.49 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRR 287 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (806)
.++|..++++..+...+.+...+...+..+.+.|+++.|..+|+.+.+.........|...+....+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35555566665544333344555555566666666666666666665543322233566666666666666666666666
Q ss_pred HHhcCCCCCChHhHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CC
Q 037510 288 MKEEDDVIVDEYAYGVLIDG-YCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN-LR 365 (806)
Q Consensus 288 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 365 (806)
+.+.. +.+...|...... +...|+.+.|..+|+.+.+.. +.+...+...++.+.+.|+.+.|+.+|++..... ..
T Consensus 160 al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 65542 2222333332222 233466666666666666652 2355666666666667777777777776655432 22
Q ss_pred CC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 366 PD--SFSFNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 366 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
|+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 235666666666667777777777766553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=6.1e-09 Score=99.11 Aligned_cols=129 Identities=9% Similarity=-0.140 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 037510 159 SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYV 238 (806)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (806)
++..+...|.+.|++++|+..|++.++.. +-+..+|+.+..++.+.|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 55556666666666666666666666643 1245566666666666666666666666666653 224455666666666
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037510 239 SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (806)
..|++++|.+.|+...+..+ .+......+..++.+.+..+.+..+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 66777777766666666442 2333333333344444444444444444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.6e-08 Score=96.17 Aligned_cols=201 Identities=11% Similarity=-0.069 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
..++..+..+|.+.|++++|.+.|++..+.. +-++.+|..+..+|.+.|++++|++.|+++++.. +.+..++..++.+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 3566678889999999999999999999863 3357789999999999999999999999999864 3357788899999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...|++++|...+++.++..+. +......+..++.+.+..+.+..+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPN--------------------------------DPFRSLWLYLAEQKLDEKQAKEVLK 162 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhccc--------------------------------cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999886532 3334344444555556555555555
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 712 SALLLTGFSPDNFTYSTLIHGYAAVGD----INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 712 ~~~~~~g~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..... ..++...++ ++..+..... .+.+...+..... ..| ...+|..++..|...|++++|.+.|++.+.
T Consensus 163 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 163 QHFEK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhc--cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555 233332222 2222222111 2222222222222 123 234667788888888999999999998887
Q ss_pred CCCCCCH
Q 037510 787 KGLTPTV 793 (806)
Q Consensus 787 ~g~~p~~ 793 (806)
..|+.
T Consensus 238 --~~p~~ 242 (259)
T d1xnfa_ 238 --NNVHN 242 (259)
T ss_dssp --TCCTT
T ss_pred --cCCCC
Confidence 56654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.1e-07 Score=84.61 Aligned_cols=137 Identities=11% Similarity=-0.038 Sum_probs=108.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|++++|++.|.++. +|++.+|..++.+|...|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----------------------------------~~~~~~~~nlG~~~~~~g~~~~A~ 56 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----------------------------------DPHSRICFNIGCMYTILKNMTEAE 56 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----------------------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----------------------------------CCCHHHHHHHHHHHHHcCCchhHH
Confidence 445678899999999987642 246778889999999999999999
Q ss_pred HHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhcHHHHHHHHHhc
Q 037510 709 RIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----------------IATYNSLVSGLCNS 771 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~ 771 (806)
+.|++.++ +.|+.. +|..++.+|.+.|++++|++.|++++... +++ ..++..+..++.+.
T Consensus 57 ~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~ 133 (192)
T d1hh8a_ 57 KAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133 (192)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHC
Confidence 99999999 778764 89999999999999999999999998631 111 13456788899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 772 GELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
|++++|.+.+++..+....|+.......+..+
T Consensus 134 ~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp TCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 99999999999998854555455555444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=6.4e-08 Score=78.04 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHH
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLC 769 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 769 (806)
..-+..+.+.|++++|+..|+++++ ..|+.. .|..++.+|...|++++|+..++++++. .| ++..|..++.++.
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHH
Confidence 3457889999999999999999999 778765 8999999999999999999999999994 45 7889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 770 NSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
..|++++|+..+++..+ ..|+...+...+
T Consensus 83 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l 111 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLK--HEANNPQLKEGL 111 (117)
T ss_dssp HTTCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999998 788766555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=1.6e-07 Score=90.40 Aligned_cols=169 Identities=17% Similarity=0.057 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCChhhhh
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEK----GF-SPNVAICSKLVSTLC-RLGKIDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
.+|..+..+|.+.|++++|++.+++.++. |. .....++..++..|. ..|++++|...++++.+....-+.
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---- 153 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---- 153 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc----
Confidence 45666677777888888888888876642 10 011345556666664 469999999999987643100000
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--------hHHHHHHHH
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--------TYSTLIHGY 733 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--------~~~~l~~~~ 733 (806)
..-...++..++..|...|++++|++.|+++.+. .|+.. .+...+..+
T Consensus 154 ----------------------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 209 (290)
T d1qqea_ 154 ----------------------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS--SMGNRLSQWSLKDYFLKKGLCQ 209 (290)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TSSCTTTGGGHHHHHHHHHHHH
T ss_pred ----------------------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh--CccchhhhhhHHHHHHHHHHHH
Confidence 0001336788999999999999999999999884 33321 245566677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC------hhcHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLKINLVPN------IATYNSLVSGLCN--SGELDRAKRLFCKLRQ 786 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 786 (806)
...|+++.|.+.++++.+. .|+ ......|+.++.. .+.+++|+..|+++.+
T Consensus 210 l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 8899999999999999873 332 2234566666654 3458889888876554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.8e-07 Score=79.74 Aligned_cols=122 Identities=15% Similarity=0.038 Sum_probs=87.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
..+...|++++|++.|.++ .+|+..+|..++.+|...|++++|...|++.++.++.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-------------------- 68 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-------------------- 68 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh--------------------
Confidence 3456677788887777653 2456677777777788888888888888887776532
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--------------CCCC-HHhHHHHHHHHHhcCCH
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--------------FSPD-NFTYSTLIHGYAAVGDI 739 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------------~~p~-~~~~~~l~~~~~~~g~~ 739 (806)
++..|..++.+|.+.|++++|+..|++.++.. ..++ ..++..++.++.+.|++
T Consensus 69 ------------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~ 136 (192)
T d1hh8a_ 69 ------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136 (192)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred ------------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence 56677778888888888888888887776521 0111 13566788889999999
Q ss_pred HHHHHHHHHHHHc
Q 037510 740 NEAFNLRDEMLKI 752 (806)
Q Consensus 740 ~~A~~~~~~~~~~ 752 (806)
++|.+.++++++.
T Consensus 137 ~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 137 KKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.7e-07 Score=74.28 Aligned_cols=101 Identities=22% Similarity=0.162 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhh
Q 037510 627 KLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTD 706 (806)
Q Consensus 627 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 706 (806)
.-+..+...|++++|+..|+++++..+ .++..|..++.+|.+.|++++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p--------------------------------~~~~~~~~~a~~~~~~~~~~~ 55 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDP--------------------------------HNHVLYSNRSAAYAKKGDYQK 55 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------------cchhhhhcccccccccccccc
Confidence 346678899999999999999998753 378899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHH
Q 037510 707 ARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNS 763 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 763 (806)
|+..++++++ +.|+. ..|..++.++...|++++|+..|+++++ +.|+ +..+..
T Consensus 56 A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~ 110 (117)
T d1elwa_ 56 AYEDGCKTVD--LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEG 110 (117)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHH
T ss_pred cchhhhhHHH--hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 9999999999 66765 5899999999999999999999999998 5674 333333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=7.1e-08 Score=87.32 Aligned_cols=99 Identities=7% Similarity=-0.055 Sum_probs=63.1
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhh
Q 037510 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664 (806)
Q Consensus 585 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 664 (806)
|+...+......|.+.|++++|+..|.++++.. +.+...|..++.+|.+.|++++|+..|+++++.++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~---------- 70 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---------- 70 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC----------
Confidence 455555556666666777777777776666653 335666666666666667777777666666654321
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+..+|..++.+|...|++++|+..|+++++
T Consensus 71 ----------------------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 71 ----------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666666666666666666666666665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.7e-07 Score=79.38 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhh
Q 037510 627 KLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTD 706 (806)
Q Consensus 627 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 706 (806)
..+..|.+.|++++|...|+++++.++. +...|..++.+|...|++++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~--------------------------------~~~~~~~lg~~~~~~~~~~~ 62 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS--------------------------------NAIYYGNRSLAYLRTECYGY 62 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh--------------------------------hhhhhhhhHHHHHhccccch
Confidence 3456788999999999999999987532 77889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH--HHhcCCHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG--LCNSGELDRAKRL 780 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~ 780 (806)
|+..|+++++ +.|+.. +|..++.+|...|++++|+..+++++. +.| +...+..+..+ +...+.+++|...
T Consensus 63 A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 63 ALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 778774 999999999999999999999999998 456 44445444433 3344455666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=8.3e-08 Score=86.86 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNS 763 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 763 (806)
|+...+...+..|.+.|++++|+..|+++++ +.|+.. +|..++.+|.+.|++++|+..|+++++ +.| ++.+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 5666777889999999999999999999999 678764 899999999999999999999999998 667 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.+|.+.|++++|...++++.+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999865
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.8e-07 Score=79.27 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
.+...+..|.+.|++++|+..|+++++ +.|+.. .|..++.+|...|++++|++.|+++++ +.| +...|..++.+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHH
Confidence 455678889999999999999999999 678764 899999999999999999999999999 456 56789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
|...|++++|...+++..+ +.|+...
T Consensus 88 ~~~~g~~~eA~~~~~~a~~--~~p~~~~ 113 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVK--VKPHDKD 113 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--cCCCCHH
Confidence 9999999999999999998 5676444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=2.8e-07 Score=73.40 Aligned_cols=90 Identities=18% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHH
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLC 769 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 769 (806)
..++..+.+.|++++|+..|++.++ ..|+. .+|..++.++.+.|++++|+..|+++++ +.| +...+..|+.+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHH
Confidence 3467789999999999999999999 67875 5999999999999999999999999999 556 6788999999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 037510 770 NSGELDRAKRLFCKLR 785 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m~ 785 (806)
..|++++|.+.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999999864
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.48 E-value=0.00011 Score=68.75 Aligned_cols=227 Identities=13% Similarity=0.021 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 037510 507 NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFK----SRELTSLVDLLAEMQTMG 582 (806)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g 582 (806)
|+..+..+...+...+++++|++.|++. .+.+ +...+..|...|.. ..+...|...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kA---------a~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKA---------CDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 3456666777777888888888888877 3333 44555556666665 557788888888877765
Q ss_pred CCCCHhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCC
Q 037510 583 LYPNIVTYGALISGWC----DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC----RLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 583 ~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~ 654 (806)
++.....+...+. ...+.+.|...++...+.|. ......+...+. .......+...+......+
T Consensus 69 ---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 140 (265)
T d1ouva_ 69 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 140 (265)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc--
Confidence 3333333433332 34577888888888877652 222223333332 2344566666666655432
Q ss_pred CChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 037510 655 PDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLI 730 (806)
Q Consensus 655 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 730 (806)
+...+..|+..|.. ..+...+...++...+.| +..++..|+
T Consensus 141 --------------------------------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg 185 (265)
T d1ouva_ 141 --------------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAG 185 (265)
T ss_dssp --------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred --------------------------------ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchh
Confidence 55677778887775 345677888888887743 566677777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 037510 731 HGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 731 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p 791 (806)
..|.. ..++++|+.+|++..+.| ++..+..|+..|.+ ..+.++|.++|++..+.|..+
T Consensus 186 ~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 186 NMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 77765 568999999999999866 56677778888875 347899999999999887665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=3.6e-06 Score=80.60 Aligned_cols=169 Identities=11% Similarity=-0.020 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhc----CCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKY----GCIP-SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIV-----PDV 192 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-----~~~ 192 (806)
+.|......|...|++++|.+.|.+..+. +-.+ -..+|+.+..+|.+.|++++|+..|++....... ...
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 34666777788888888888888877653 1111 1346777777888888888888777766542100 012
Q ss_pred hHHHHHHHHHH-hcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh---
Q 037510 193 FTCSIVVNAYC-KEKSMEKALDFVKEMENL----GFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAV--- 263 (806)
Q Consensus 193 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 263 (806)
.++..+...+. ..|++++|.+.+.+..+. +.++ -..++..+...|...|++++|...|+++..........
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 23444444443 346666666666665431 1111 12345555666666666666666666655532211111
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 264 ---TYTTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 264 ---~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
.+...+..+...|+++.|.+.+++..+.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1222333444555666666555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.8e-07 Score=74.21 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC-hhcHHHHHH
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVG---DINEAFNLRDEMLKINLVPN-IATYNSLVS 766 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 766 (806)
..++..+...+++++|.+.|++.++ ..|+. .++..++.++.+.+ ++++|+.++++++.....|+ ..++..|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3467788899999999999999999 67766 58999999998755 55679999999987432333 247888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 767 GLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+|.+.|++++|+++|+++.+ +.|+......+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 99999999999999999999 8898776655544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=0.00043 Score=64.60 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVK----NGEGYVALLVYEQMMRVGIVPDVFTCS 196 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~ 196 (806)
+|..+.-|...+...|++++|++.|++..+.| +..++..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35566667777778888888888888887765 66677777777765 557777888777776654 233333
Q ss_pred HHHHHHH----hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037510 197 IVVNAYC----KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVS----LGDLNGAKRVLEWTCEKGISRTAVTYTTL 268 (806)
Q Consensus 197 ~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (806)
.+...+. ...+.+.|...++...+.|.. .....+...+.. ......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 3333332 245667777777777666532 222223223322 33455555665555543 345556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 037510 269 TKGYCK----QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK----VGKVDEAIRVLNEMLKTGLEMNLLICNSLI 340 (806)
Q Consensus 269 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 340 (806)
...|.. ..+...+...++...+. + +......+...+.. ..++++|..+|....+.| ++..+..|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 665553 33445555555555443 1 33344444333333 345555666666555554 334444455
Q ss_pred HHHHh----cCCHhHHHHHHHHHhhCC
Q 037510 341 NGYCK----LGQVCEAKRVLRCMGDWN 363 (806)
Q Consensus 341 ~~~~~----~g~~~~A~~~~~~~~~~~ 363 (806)
.+|.+ ..+.++|.+.|++..+.|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 44443 224555555555554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.37 E-value=9e-07 Score=70.35 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhh
Q 037510 627 KLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTD 706 (806)
Q Consensus 627 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 706 (806)
.++..+.+.|++++|...+++++..++. ++.+|..++.++.+.|++++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~a~~~lg~~~~~~~~~~~ 68 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE--------------------------------REEAWRSLGLTQAENEKDGL 68 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc--------------------------------cchhhhhhhhhhhhhhhHHH
Confidence 4566788999999999999999987532 67899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 707 ARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 707 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
|+..|+++++ +.|+. .+|..++..|...|++++|++.+++.+
T Consensus 69 A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 69 AIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccc--cccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999 78876 599999999999999999999999864
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.5e-06 Score=71.02 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Ch-------hc
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NI-------AT 760 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~-------~~ 760 (806)
.+..++..+...|++++|++.|++.++ +.|+. .+|..++.+|.+.|++++|++.++++++ +.| +. .+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 456788999999999999999999999 67775 5899999999999999999999999998 333 22 36
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
|..++..+...|++++|.+++++... ..|+......
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 117 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKK 117 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHHH
Confidence 67788888899999999999999876 3455544433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.1e-06 Score=73.17 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD----------------NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
..+...+..+.+.|++++|+..|++.++. .|. ..+|+.++.+|.+.|++++|+..++++++
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~- 90 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 90 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh-
Confidence 35667788999999999999999999873 221 13577889999999999999999999999
Q ss_pred CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 753 NLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 753 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+.| ++..+..++.+|...|++++|...|++..+ +.|+.......+
T Consensus 91 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l 136 (170)
T d1p5qa1 91 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQL 136 (170)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred -ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 456 788999999999999999999999999998 778655444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.9e-06 Score=69.19 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC--
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN-- 703 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 703 (806)
..+++.+...+++++|.+.|++++..++ .++.++..++.++.+.++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p--------------------------------~~~~~~~n~a~~L~~s~~~~ 50 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS--------------------------------VSKSTQFEYAWCLVRTRYND 50 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------------CCHHHHHHHHHHHTTSSSHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC--------------------------------CCHHHHHHHHHHHHHhcchH
Confidence 4577788889999999999999998763 377889999999987655
Q ss_pred -hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 704 -VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 704 -~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
.++|+.+|+++++.+..|+. .+|..|+.+|.+.|++++|++.|+++++ +.|+..
T Consensus 51 d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 51 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 45799999999984333333 3788999999999999999999999999 678544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.27 E-value=4.6e-06 Score=70.56 Aligned_cols=108 Identities=18% Similarity=0.073 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCC----CCCC-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTG----FSPD-----------NFTYSTLIHGYAAVGDINEAFNLRDEMLKINL 754 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 754 (806)
.+...+..+.+.|++.+|+..|+++++.- ..++ ..+|..++.+|.+.|++++|++.++++++ +
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~--~ 96 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I 96 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc--c
Confidence 56667888999999999999999998731 1111 12577899999999999999999999999 4
Q ss_pred CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 755 VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 755 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.| +..+|..++.+|...|++++|...|++..+ +.|+.......+.
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~ 142 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE 142 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 56 778999999999999999999999999998 7887665554444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.4e-06 Score=68.14 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.+..++..+.+.|++++|+..|.++++.++ .+..++..++.+|.+.|+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--------------------------------~~~~~~~~~a~~~~~~~~ 53 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--------------------------------TNMTYITNQAAVYFEKGD 53 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------------------ccHHHHHhHHHHHHHcCc
Confidence 345677889999999999999999988753 377889999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 704 VTDARRIFSALLLTGFSPDN--------FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
+++|+..++++++ +.|+. .+|..++..+...+++++|++.|++.+.. .++...
T Consensus 54 ~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 54 YNKCRELCEKAIE--VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred hHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 9999999999987 34432 26778888889999999999999998873 455443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.2e-05 Score=69.33 Aligned_cols=83 Identities=18% Similarity=-0.011 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVS 766 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 766 (806)
.+|+.+..+|.+.|++++|+..+++.++ +.|+. .+|..++.+|...|++++|+..|+++++ +.| |......+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 3677899999999999999999999999 77865 4999999999999999999999999999 556 5556655555
Q ss_pred HHHhcCCHH
Q 037510 767 GLCNSGELD 775 (806)
Q Consensus 767 ~~~~~g~~~ 775 (806)
+..+.+...
T Consensus 139 ~~~~~~~~~ 147 (170)
T d1p5qa1 139 CQQRIRRQL 147 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=1.6e-05 Score=68.67 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
+...|..+..+|.+.|++++|+..++++++ +.|+.. +|..++.+|...|++++|++.|+++++ +.| +......+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l 151 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 445778889999999999999999999999 778765 899999999999999999999999999 456 55555555
Q ss_pred HHHHHh
Q 037510 765 VSGLCN 770 (806)
Q Consensus 765 ~~~~~~ 770 (806)
..+..+
T Consensus 152 ~~~~~~ 157 (169)
T d1ihga1 152 LKVKQK 157 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.08 E-value=5.5e-06 Score=69.16 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=88.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc----------
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS---------- 701 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 701 (806)
|-+.+.+++|+..++++++.++. ++.++..++.+|...
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~--------------------------------~~~~~~~~g~~l~~~~~~~~~~e~~ 54 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL--------------------------------DADNLTRWGGVLLELSQFHSISDAK 54 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--------------------------------CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc--------------------------------chHHHHHHHHHHHHhhhhhhhhHHH
Confidence 45677899999999999987633 777888888888744
Q ss_pred CChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD-----------INEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
+.+++|+..|+++++ +.|+.. +|..++.+|...|+ +++|.+.|+++++ +.|+...|..-+
T Consensus 55 ~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L---- 126 (145)
T d1zu2a1 55 QMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL---- 126 (145)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHHHH--hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHH----
Confidence 446789999999999 788764 89999999987653 6889999999988 678666554333
Q ss_pred hcCCHHHHHHHHHHHHHCCC
Q 037510 770 NSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m~~~g~ 789 (806)
+....|.+++.+..++|+
T Consensus 127 --~~~~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 127 --EMTAKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HHHHTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHHHHhc
Confidence 333567777777777764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=4.6e-05 Score=65.44 Aligned_cols=139 Identities=15% Similarity=0.070 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDF-VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
+...+..+.+.|++++|...|++++..-. .+. ...........+ ...+|+.+..+|.+.|+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~Nla~~~~~l~~ 79 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------LSEKESKASESF----------LLAAFLNLAMCYLKLRE 79 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------CCHHHHHHHHHH----------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------cchhhhhhcchh----------HHHHHHhHHHHHHHhhh
Confidence 44456667778888888888877664210 000 000000000000 13367778999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCH-HHHHHH
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGEL-DRAKRL 780 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~ 780 (806)
+++|+..+++.++ +.|+.. +|..++.+|...|++++|+..|+++++ +.| +..+...+..+..+.+.. +...+.
T Consensus 80 ~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~~~~~~~e~~kk~ 155 (168)
T d1kt1a1 80 YTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQKKAKEHNERDRRT 155 (168)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999 678764 999999999999999999999999998 567 555555555554444433 334455
Q ss_pred HHHHH
Q 037510 781 FCKLR 785 (806)
Q Consensus 781 ~~~m~ 785 (806)
+..|-
T Consensus 156 ~~~~f 160 (168)
T d1kt1a1 156 YANMF 160 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=2.7e-05 Score=67.26 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC--CCC-CCH------------------HhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLT--GFS-PDN------------------FTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.....+......|++++|.+.|.+.++. |-. ++. ..+..++.++.+.|++++|+..+++
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~ 92 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 92 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4455667889999999999999999984 111 111 2467889999999999999999999
Q ss_pred HHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHhh
Q 037510 749 MLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLR-----QKGLTPTVVT 795 (806)
Q Consensus 749 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 795 (806)
+++ +.| +...|..++.+|.+.|+.++|++.|+++. +.|+.|+..+
T Consensus 93 al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 93 LTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999 567 77899999999999999999999999974 3599999766
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0069 Score=57.24 Aligned_cols=129 Identities=21% Similarity=0.140 Sum_probs=66.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEK 206 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 206 (806)
.++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+...+.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 455566677777777777765443 455666666677777766666543 14456666666666554
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 037510 207 SMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQH 276 (806)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (806)
....+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 44332 11122222344444556666666666666666666554321 234555666666666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=3.3e-06 Score=70.53 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=84.1
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAV----------GDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
|-+.+.+++|+..|++.++ +.|+.. ++..++.+|... +++++|+..|+++++ +.| +..+|..++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHH
Confidence 4556779999999999999 788775 888899888754 456889999999998 567 677899999
Q ss_pred HHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 766 SGLCNSGE-----------LDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 766 ~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
.+|...|+ +++|.+.|++..+ +.|+...|..-+..+-+
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHHH
Confidence 99987654 6889999999998 89999998887765543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=3e-05 Score=66.79 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC--------------CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLT--------------GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLV 755 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 755 (806)
+...+..+...|++++|+..|+++++. .+.|.. ..|..++.+|.+.|++++|+..+.++++ +.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~ 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--ID 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh--hh
Confidence 455677888999999999999887641 123433 3678899999999999999999999998 55
Q ss_pred C-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 037510 756 P-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYN 797 (806)
Q Consensus 756 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 797 (806)
| ++..|..++.+|.+.|++++|+..|++..+ +.|+.....
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~ 148 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQ 148 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 6 678899999999999999999999999998 677654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.96 E-value=9.2e-05 Score=62.22 Aligned_cols=72 Identities=19% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLV 765 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 765 (806)
+|+.++.+|.+.|++++|++.++++++ +.|+.+ +|..++.+|...|++++|+..|+++++ +.|+ ..+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~ 142 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 666777888888888888888888887 567654 788888888888888888888888887 4563 44444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=3.4e-05 Score=66.30 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCC--C-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLT-GFSP--D-----------NFTYSTLIHGYAAVGDINEAFNLRDEMLKINL 754 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p--~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 754 (806)
..+.-.+..+.+.|++.+|+..|++.+.. ...+ + ..+|+.++.+|.+.|++++|+..++++++.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-- 93 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 93 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--
Confidence 36677889999999999999999998753 1111 1 124677888999999999999999999994
Q ss_pred CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 755 VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 755 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.| +...|..++.+|...|++++|...|+++.+ +.|+.......+.
T Consensus 94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIF 139 (168)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45 778899999999999999999999999998 7888665554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0097 Score=56.19 Aligned_cols=49 Identities=6% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKI 530 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 530 (806)
++..+.+.+++.-...+++...+.| +..+.+++...|...++++.-.+.
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHH
Confidence 3444445566666666666655544 446777777888887776554433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=0.00024 Score=61.10 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATY 761 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 761 (806)
..+..++.++.+.|++++|+..++++++ ..|.. ..|..++.+|.+.|++.+|++.|+++.+ .|+.|.+.+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 4678899999999999999999999999 77865 5999999999999999999999999854 6999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=4.3e-06 Score=86.79 Aligned_cols=225 Identities=9% Similarity=-0.039 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKN-TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI-ITYRTLSDGYCKVGNLEEAFKIKNL 533 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (806)
+|.+.|+++... .|+ ...+..+...+...|++++| +++++... |+. ..++.. ....+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHHH-HHHHHHHHHHHH
Confidence 677888888764 333 34555666677777777766 56665542 221 111111 11111 113344555554
Q ss_pred HHhcccChhhhhcCCCCCHHHHHH--HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 037510 534 MERREILPSMEKEAIVPSIDMYNY--LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYF 611 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 611 (806)
. .+....++..-... ........+.++.|+..+....... .++...+..+...+.+.|+.++|...+.
T Consensus 75 ~---------~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 75 Q---------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp H---------HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred h---------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 4 22222222221111 1122223344455554444333321 2344566677777888888888888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHH
Q 037510 612 DMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVY 691 (806)
Q Consensus 612 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (806)
+..... ....+..++..+...|++++|...++++++..+. +..+|
T Consensus 145 ~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~--------------------------------~~~~~ 189 (497)
T d1ya0a1 145 SSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS--------------------------------NGQPY 189 (497)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------------BSHHH
T ss_pred HHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------------------------chHHH
Confidence 776532 2356777888888888999999999888876532 66788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAV 736 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 736 (806)
+.|+..+...|+..+|+..|.+.+. ..|+ ..++..|...+.+.
T Consensus 190 ~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 190 NQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 8898888889999999999988888 4444 45788887766544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=2.2e-05 Score=81.37 Aligned_cols=225 Identities=8% Similarity=-0.121 Sum_probs=109.7
Q ss_pred hHHHHHHHhhhcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChhHHHHHHHH
Q 037510 140 NALHVFDNMGKYGCIPS-LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDV-FTCSIVVNAYCKEKSMEKALDFVKE 217 (806)
Q Consensus 140 ~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 217 (806)
+|.+.|++..+.. |+ ..++..+..++..+|++++| |++++.. .|+. ...+.. ..+.+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHHH-HHHHHHHHHHHH
Confidence 5777777776642 33 44666677777777777766 6666553 2221 111111 11111 123455666666
Q ss_pred HHHcCCCcCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037510 218 MENLGFELNVVTYNS--LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVI 295 (806)
Q Consensus 218 ~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 295 (806)
..+....++..-... +...+...+.++.|...+.......+ ++...+..+...+.+.|+.++|...+....+..
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 554432233221111 11122233445555544444333222 345566777777777788877777666654431
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHH
Q 037510 296 VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLV 375 (806)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 375 (806)
...++..+...+...|++++|...|.+..+..+. +...|+.|...+...|+..+|...|.+..... +|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 1245666777777788888888888887776433 56678888888888888888888887776654 56666666666
Q ss_pred HHHHh
Q 037510 376 DGYCR 380 (806)
Q Consensus 376 ~~~~~ 380 (806)
..+.+
T Consensus 228 ~~~~~ 232 (497)
T d1ya0a1 228 KALSK 232 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.72 E-value=6.6e-05 Score=63.49 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=75.9
Q ss_pred HHHHH--HHHHHhcCChhhHHHHHHHHHHC-CCCCC----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 037510 690 VYNIV--IAGICKSGNVTDARRIFSALLLT-GFSPD----------NFTYSTLIHGYAAVGDINEAFNLRDEMLKI---- 752 (806)
Q Consensus 690 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~-g~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 752 (806)
+|..+ +..+...|++++|++.|++.++. ...|+ ..+|+.++.+|...|++++|++.++++++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 55555 56677889999999999999973 11122 247889999999999999999999999862
Q ss_pred -CCCCC-----hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 753 -NLVPN-----IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 753 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
...++ ...++.++.+|...|++++|...|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22567889999999999999999999764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=2.2e-05 Score=72.73 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
..+.|++++|+..+++.++..+. |...+..++..|+..|++++|...|
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~--------------------------------d~~ar~~La~lL~~~G~~e~A~~~l 53 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK--------------------------------DASLRSSFIELLCIDGDFERADEQL 53 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--------------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC--------------------------------CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34679999999999999988643 7889999999999999999999999
Q ss_pred HHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 712 SALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 712 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++..+ +.|+.. .+..+...+...+..+++..........+ .| +...+......+.+.|+.++|...++++.+
T Consensus 54 ~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 54 MQSIK--LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999 788865 66666666554444443322211111111 22 223344455678899999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.52 E-value=6e-05 Score=69.65 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=75.9
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhH
Q 037510 598 CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLD 677 (806)
Q Consensus 598 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (806)
.+.|++++|+..+++.++.. +.|...+..++..|+..|++++|.+.++...+..+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~----------------------- 62 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE----------------------- 62 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-----------------------
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 45688888888888888763 446788888888888888888888888888776422
Q ss_pred HhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 678 ESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+...+..+...+...+..+++..-....... ..|+. ..+...+..+...|+.++|.+.++++.+
T Consensus 63 ---------~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 63 ---------YLPGASQLRHLVKAAQARKDFAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp ---------GHHHHHHHHHHHHHHHHHHHHTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHhccccHHHHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3334444444443333333322211111111 12322 3555566777788888888888888877
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.34 E-value=0.00053 Score=57.62 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=75.6
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 624 ICSKL--VSTLCRLGKIDEANIFLQKMVDFDFV-PDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 624 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
.|..+ +..+...|++++|+..|++.++.... |+..... .. .....+|+.++.+|.+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~------~~---------------~~~a~~~~nlg~~~~~ 67 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD------HA---------------GFDAFCHAGLAEALAG 67 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC------HH---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc------cc---------------hhHHHHHHHHHHHHHH
Confidence 34444 45566779999999999998864321 1100000 00 0024578999999999
Q ss_pred cCChhhHHHHHHHHHHC-----CCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLT-----GFSPDN-----FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~-----g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.|++++|...+++.++. ...++. .+|+.++.+|...|++++|++.|+++++
T Consensus 68 lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 68 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998862 122322 2678899999999999999999999987
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00067 Score=51.04 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC-----CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLT-----GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYN 762 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 762 (806)
-+..++..+.+.|++++|+..|++.++. ...++. .+++.|+.+|.+.|++++|+..++++++ +.|+ +.+++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCHHHHH
Confidence 3446788888888888888888888763 112232 3788888888888888888888888888 5563 44444
Q ss_pred HH
Q 037510 763 SL 764 (806)
Q Consensus 763 ~l 764 (806)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.001 Score=50.02 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKIN---L--VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
.+-.++..+.+.|++++|+..|+++++.. . .+ ...+++.|+.++.+.|++++|++.++++++ +.|+..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~ 80 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCH
Confidence 34478999999999999999999998731 1 11 145789999999999999999999999998 778744
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.79 E-value=0.016 Score=46.46 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 637 KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 637 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
++++|..+|++..+.+.. ..+..|. .....+.++|.+.+++..+
T Consensus 8 d~~~A~~~~~kaa~~g~~----------------------------------~a~~~l~--~~~~~~~~~a~~~~~~aa~ 51 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM----------------------------------FGCLSLV--SNSQINKQKLFQYLSKACE 51 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT----------------------------------THHHHHH--TCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh----------------------------------hhhhhhc--cccccCHHHHHHHHhhhhc
Confidence 578889999988877632 2333333 3345678999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037510 717 TGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----SGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 717 ~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 788 (806)
.| +..+...|...|.. ..+.++|+++|++..+.| ++.....|...|.. ..+.++|.+++++..+.|
T Consensus 52 ~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 52 LN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 65 44566667777764 457899999999999866 45566677777765 468999999999999876
Q ss_pred CC
Q 037510 789 LT 790 (806)
Q Consensus 789 ~~ 790 (806)
..
T Consensus 126 ~~ 127 (133)
T d1klxa_ 126 SE 127 (133)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.48 E-value=0.029 Score=44.83 Aligned_cols=110 Identities=15% Similarity=0.036 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhh
Q 037510 602 MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESAR 681 (806)
Q Consensus 602 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (806)
++++|++.|++..+.|. + ..+..+. .....+.++|.+++++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g----------------------------- 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN----------------------------- 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT-----------------------------
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc-----------------------------
Confidence 44556666666655541 1 1112221 122345667777777766654
Q ss_pred cCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 037510 682 SLCVPNYVVYNIVIAGICK----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 682 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 753 (806)
++..+..|...|.. ..+.++|.+.|++..+.| +..+...|...|.. ..+.++|.++|+++.+.|
T Consensus 54 -----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 54 -----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp -----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred -----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 33455555555543 345677888888777754 23344456655554 347778888888877765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=1.3 Score=43.57 Aligned_cols=52 Identities=6% Similarity=-0.081 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 480 IKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 480 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
+..+...|+...|...+..+.+. .+......+.....+.|.++.|+......
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 45567788888888888877654 25556667777888888888888776665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.043 Score=42.08 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-Ch-hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 725 TYSTLIHGYAAVG---DINEAFNLRDEMLKINLVP-NI-ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 725 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
|--..++++.++. ++++++.+++++.+. .| +. ..+..|..+|.+.|++++|+++++.+.+ +.|+..-.
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~qA 109 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHHH
Confidence 4444555555432 344566666665542 23 22 3445555566666666666666666655 55554433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.99 E-value=0.49 Score=35.60 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=89.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+...|.+++..+++.+.... .+..-|+-++--....-+-+...+.++.+- + .+ |.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG---------~-~F--Dl---------- 66 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIG---------S-YF--DL---------- 66 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHG---------G-GS--CG----------
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHh---------h-hc--Cc----------
Confidence 44567788888888877764 355556666655555556556666665551 1 01 10
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
..++++......+-.+ ..+.......++.+..+|.-++-.++++.+.+.+ ++++.....+..+|.+.|...++.
T Consensus 67 s~C~Nlk~vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~n 140 (161)
T d1wy6a1 67 DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDAT 140 (161)
T ss_dssp GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHH
Confidence 1222232222222211 1233445556677788888888888888877754 788888889999999999999999
Q ss_pred HHHHHHhhCCCC
Q 037510 643 IFLQKMVDFDFV 654 (806)
Q Consensus 643 ~~~~~~~~~~~~ 654 (806)
+++.++-+.|..
T Consensus 141 ell~~ACe~G~K 152 (161)
T d1wy6a1 141 TLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHHhHH
Confidence 999999888764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.25 E-value=0.088 Score=40.32 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 686 PNYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
+...+-....+++.+..+ .++|+.+|+++.+ ..|+. ..+..|+-+|.+.|++++|.++++++++ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 455566667788887654 6789999999998 45654 4777899999999999999999999999 678654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.85 E-value=0.92 Score=34.07 Aligned_cols=140 Identities=16% Similarity=0.071 Sum_probs=76.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
+.-.|..++..+++.+.... .+..-||-+|--....-+-+...++++.+-+. -|. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 44556667777777666653 24455565555555555555555555555432 111 122333333
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
...+-.+-. +...+...++.+.++|+-++-.+++.++.+. -++++...-.+..+|.+.|...++.+++.+.-+
T Consensus 76 v~C~~~~n~------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 76 VECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcc------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333222211 2334455566666677777777777665553 355666666777777777777777777766666
Q ss_pred CCC
Q 037510 362 WNL 364 (806)
Q Consensus 362 ~~~ 364 (806)
.|+
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=3.8 Score=39.97 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 037510 381 ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKL 460 (806)
Q Consensus 381 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (806)
.+..+.+...+......+. +.......+......+++..+...+..+... ........--+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 4445556555555544322 2222333344444556666666666655322 111233334555666666777777666
Q ss_pred HHHHHH
Q 037510 461 WNNILA 466 (806)
Q Consensus 461 ~~~~~~ 466 (806)
|..+..
T Consensus 342 ~~~~a~ 347 (450)
T d1qsaa1 342 LHQLMQ 347 (450)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 666653
|